Citrus Sinensis ID: 014990
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 415 | 2.2.26 [Sep-21-2011] | |||||||
| P82861 | 498 | NADPH:adrenodoxin oxidore | N/A | no | 0.927 | 0.773 | 0.485 | 1e-101 | |
| P22570 | 491 | NADPH:adrenodoxin oxidore | yes | no | 0.901 | 0.761 | 0.489 | 2e-91 | |
| P08165 | 492 | NADPH:adrenodoxin oxidore | yes | no | 0.906 | 0.764 | 0.466 | 4e-91 | |
| Q61578 | 494 | NADPH:adrenodoxin oxidore | yes | no | 0.906 | 0.761 | 0.468 | 5e-91 | |
| P56522 | 494 | NADPH:adrenodoxin oxidore | yes | no | 0.903 | 0.759 | 0.465 | 1e-90 | |
| Q9V3T9 | 466 | NADPH:adrenodoxin oxidore | yes | no | 0.877 | 0.781 | 0.454 | 2e-86 | |
| O05783 | 456 | NADPH-ferredoxin reductas | yes | no | 0.903 | 0.822 | 0.427 | 2e-78 | |
| O32886 | 456 | NADPH-ferredoxin reductas | yes | no | 0.896 | 0.815 | 0.412 | 7e-74 | |
| P65528 | 575 | Probable ferredoxin/ferre | no | no | 0.874 | 0.631 | 0.405 | 1e-69 | |
| P65529 | 575 | Probable ferredoxin/ferre | no | no | 0.874 | 0.631 | 0.405 | 1e-69 |
| >sp|P82861|ADRO_SALFO NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Salvelinus fontinalis GN=fdxr PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/408 (48%), Positives = 265/408 (64%), Gaps = 23/408 (5%)
Query: 11 SFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE 70
S + +S+P +VC+VG GPAGFYTA+ +K + QVDI +RLP PFGLVR GVAPDHPE
Sbjct: 36 STSTPASSP-KVCIVGGGPAGFYTAQHLVKTRTDVQVDIYERLPVPFGLVRFGVAPDHPE 94
Query: 71 TKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDL 130
K VIN F++ +H RCSF GNV +G V++ EL++ YH VVL+YGAE +R +G+PGEDL
Sbjct: 95 VKNVINTFTQTARHARCSFHGNVRVGKDVTVEELQEAYHAVVLSYGAEGNRTMGVPGEDL 154
Query: 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI 190
GV+SA++FV WYNG P + L PDL S +TAVILGQGNVALDVAR+LL P + L TDI
Sbjct: 155 AGVYSAKDFVGWYNGLPRNRELRPDL-SCETAVILGQGNVALDVARMLLSPVDILKKTDI 213
Query: 191 ASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250
+A AL SS+R+V +VGRRGP+Q ACT KELRE++ + + + E
Sbjct: 214 TQHALDALAESSVRRVLIVGRRGPLQVACTIKELREMVNLPGTRPEMEASEF---EGIAE 270
Query: 251 EMKN-SRIQRRVYELLSKAAASASSQPML-----GQRELHFVFFRKPDSFLESNERSGHV 304
+K+ +R ++R+ ELL KAA + L +R F F R+P L S +
Sbjct: 271 TLKSLARPRKRLTELLLKAAIETPGEEELEKRNKAERAWGFRFLRRPLEVLPSTDLI-RA 329
Query: 305 SGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPN 363
+G+ L+G G G + AV TGE ED++CG+V+ SIGYKS+P++ +PFD K I+PN
Sbjct: 330 AGIRLAVNRLEGDGEGVR-AVATGEVEDVECGLVISSIGYKSLPIDPAVPFDGRKAIIPN 388
Query: 364 IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
GRV Q GLY GW+KRGPTG+IAT + + +T +L
Sbjct: 389 TMGRV---------QQTAGLYCSGWVKRGPTGVIATTMNDSFDTARTL 427
|
Salvelinus fontinalis (taxid: 8038) EC: 1EC: .EC: 1EC: 8EC: .EC: 1EC: .EC: 2 |
| >sp|P22570|ADRO_HUMAN NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Homo sapiens GN=FDXR PE=1 SV=3 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/396 (48%), Positives = 246/396 (62%), Gaps = 22/396 (5%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
F+ P ++CVVGSGPAGFYTA+ LK H +A VDI ++ P PFGLVR GVAPDHPE
Sbjct: 32 FSTQEKTP-QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 89
Query: 72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
K VIN F++ RC+F+GNV +G V++ ELR+ YH VVL+YGAE RAL IPGE+L
Sbjct: 90 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 149
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L TDI
Sbjct: 150 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 208
Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
A L S ++ V+LVGRRGP+Q A T KELRE++ + + D + +E
Sbjct: 209 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKE 268
Query: 252 MKNSRIQRRVYELL-----SKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306
+ R +R+ ELL K + +++ R FFR P L S + +G
Sbjct: 269 VPRPR--KRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAG 325
Query: 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIR 365
V T L+G + AV TG+ EDL CG+VL SIGYKS PV+ +PFD+ G++PN+
Sbjct: 326 VRLAVTRLEGVDEATR-AVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSKLGVIPNVE 384
Query: 366 GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
GRV+ GLY GW+KRGPTG+IAT +
Sbjct: 385 GRVMDV---------PGLYCSGWVKRGPTGVIATTM 411
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P08165|ADRO_BOVIN NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Bos taurus GN=FDXR PE=1 SV=3 | Back alignment and function description |
|---|
Score = 335 bits (859), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 188/403 (46%), Positives = 250/403 (62%), Gaps = 27/403 (6%)
Query: 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD 67
+ F+ P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPD
Sbjct: 28 FGQHFSTQEQTP-QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPD 86
Query: 68 HPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
HPE K VIN F++ + +RC+F+GNV +G V++ EL+ YH VVL+YGAE +AL IPG
Sbjct: 87 HPEVKNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPG 146
Query: 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187
E+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L
Sbjct: 147 EELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEK 205
Query: 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247
TDI A AL S ++ V++VGRRGP+Q A T KELRE++ + + D +
Sbjct: 206 TDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--L 263
Query: 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH--------FVFFRKPDSFLESNE 299
+ + +R ++R+ ELL + +A+ +P + + FFR P L S +
Sbjct: 264 QDRIKEAARPRKRLMELLLR---TATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD 320
Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHK 358
+G+ T L+G G + AV TG+ EDL CG+VL SIGYKS P++ +PFD
Sbjct: 321 -GRRAAGIRLAVTRLEGIGEATR-AVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKL 378
Query: 359 GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
G+VPN+ GRV+ GLY GW+KRGPTG+I T +
Sbjct: 379 GVVPNMEGRVVDV---------PGLYCSGWVKRGPTGVITTTM 412
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q61578|ADRO_MOUSE NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Mus musculus GN=Fdxr PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 189/403 (46%), Positives = 249/403 (61%), Gaps = 27/403 (6%)
Query: 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD 67
+ F+ P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPD
Sbjct: 30 FCQKFSTQEKTP-QICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPD 88
Query: 68 HPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
HPE K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + LGIPG
Sbjct: 89 HPEVKNVINTFTQTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPG 148
Query: 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187
E+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L
Sbjct: 149 EELPGVVSARAFVGWYNGLPENQELAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEK 207
Query: 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247
TDI A AL S ++ V++VGRRGP+Q A T KELRE++ + + D +
Sbjct: 208 TDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGL-- 265
Query: 248 DEEEMKNSRIQRRVYELLSKAAASASSQP--------MLGQRELHFVFFRKPDSFLESNE 299
++ +K+ + R L +A+ +P L R FFR P L + +
Sbjct: 266 -QDRIKD--VPRPRRRLTELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPD 322
Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHK 358
V+G+ T+L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD
Sbjct: 323 -GQRVAGIRLAVTSLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKL 380
Query: 359 GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
G++PN GRV+ N+ GLY GW+KRGPTG+I T +
Sbjct: 381 GVIPNTEGRVV-NVP--------GLYCSGWVKRGPTGVITTTM 414
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P56522|ADRO_RAT NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Fdxr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 188/404 (46%), Positives = 251/404 (62%), Gaps = 29/404 (7%)
Query: 8 LSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD 67
+ F+ + P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPD
Sbjct: 30 FCKKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPD 88
Query: 68 HPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
HPE K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + L IPG
Sbjct: 89 HPEVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPG 148
Query: 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187
E+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L
Sbjct: 149 EELPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEK 207
Query: 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247
TDI A L S ++ V++VGRRGP+Q A T KELRE++ + + D +
Sbjct: 208 TDITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL-- 265
Query: 248 DEEEMKN-SRIQRRVYELLSKAAASASSQPMLGQRELH--------FVFFRKPDSFLESN 298
++ +K+ R ++R+ ELL + +A+ +P + + FFR P L +
Sbjct: 266 -QDRIKDVPRPRKRLTELLLR---TATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTP 321
Query: 299 ERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNH 357
+ V+G+ T L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD
Sbjct: 322 D-GRRVAGIRLAVTRLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPK 379
Query: 358 KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
GI+PN GRV+ GLY GW+KRGPTG+I T +
Sbjct: 380 LGIIPNTEGRVVN---------APGLYCSGWVKRGPTGVITTTM 414
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9V3T9|ADRO_DROME NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Drosophila melanogaster GN=dare PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 175/385 (45%), Positives = 238/385 (61%), Gaps = 21/385 (5%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
R+C+VG+GPAGFY A+ LK VD++++LP PFGLVR GVAPDHPE K VIN F++
Sbjct: 31 RICIVGAGPAGFYAAQLILKQLDNCVVDVVEKLPVPFGLVRFGVAPDHPEVKNVINTFTK 90
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+H R +FGN++LG+ VSL ELR YH V+L YGA+ DR L + E L V SAR+FV
Sbjct: 91 TAEHPRLRYFGNISLGTDVSLRELRDRYHAVLLTYGADQDRQLELENEQLDNVISARKFV 150
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
WYNG P +NL+PDL D ++ GQGNVA+DVAR+LL P + L TTD YA AL
Sbjct: 151 AWYNGLPGAENLAPDLSGRDVTIV-GQGNVAVDVARMLLSPLDALKTTDTTEYALEALSC 209
Query: 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
S + +V+LVGRRGP+QAA T KELRE+L + N+ R +D S D + K R ++R
Sbjct: 210 SQVERVHLVGRRGPLQAAFTIKELREMLKLPNVDTRWRTEDF--SGIDMQLDKLQRPRKR 267
Query: 261 VYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320
+ EL+ K+ + G ++ +F R P + + F T L+
Sbjct: 268 LTELMLKSLKEQGR--ISGSKQFLPIFLRAPKAIAPGE--------MEFSVTELQ----- 312
Query: 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQV 379
++ AV T E L ++L+SIGYKS V+ G+ FD +G V NI GR+LK+ + + +V
Sbjct: 313 QEAAVPTSSTERLPSHLILRSIGYKSSCVDTGINFDTRRGRVHNINGRILKDDA--TGEV 370
Query: 380 ENGLYVCGWLKRGPTGIIATNLYCA 404
+ GLYV GWL GPTG+I T + A
Sbjct: 371 DPGLYVAGWLGTGPTGVIVTTMNGA 395
|
Required for synthesis of steroid hormones, for olfactory sensory behavior and completion of the second larval molt (a steroid mediated developmental transition) and pupariation. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|O05783|FPRA_MYCTU NADPH-ferredoxin reductase FprA OS=Mycobacterium tuberculosis GN=fprA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 170/398 (42%), Positives = 235/398 (59%), Gaps = 23/398 (5%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA + VD+++ LPTP+GLVRSGVAPDHP+ K
Sbjct: 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+SDR L IPGEDL G
Sbjct: 63 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+A +FV WYN HP + +SPDL S AV++G GNVALDVARILL + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
A +L I++V +VGRRGP+QAA T ELRE+ + + V I +L TDE+
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAEL-DGITDEDAAA 240
Query: 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
++ ++ ++L A +P G R + F F P +E + V + +
Sbjct: 241 VGKVCKQNIKVLR---GYADREPRPGHRRMVFRFLTSP---IEIKGKR-KVERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373
L G G+ A TGE E+L +V++S+GY+ VP GLPFD+ G +PN+ GR I+
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGR----IN 349
Query: 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
G ++ YV GW+KRGPTG+I TN A++TV +L
Sbjct: 350 GSPNE-----YVVGWIKRGPTGVIGTNKKDAQDTVDTL 382
|
May serve as electron transfer protein and supply electrons to P450 systems. Mycobacterium tuberculosis (taxid: 1773) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|O32886|FPRA_MYCLE NADPH-ferredoxin reductase FprA OS=Mycobacterium leprae (strain TN) GN=fprA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 225/395 (56%), Gaps = 23/395 (5%)
Query: 22 VCVVGSGPAGFYTAEKTLKAHQEAQ-----VDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
+ +VGSGP+GF+ A LKA + VD+++ LPTP+GLVRSGVAPDHP+ K +
Sbjct: 9 IAIVGSGPSGFFAAASVLKAADASDEINVAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 68
Query: 77 QFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136
QF + + R FFGNV +G + +EL + Y V+ A GA+SDRAL IPGEDL G +A
Sbjct: 69 QFEKTAEDPRFRFFGNVIVGKHIEPAELAERYDAVIYAVGAQSDRALNIPGEDLPGSIAA 128
Query: 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT 196
+FV WYN HP+ SPDL S AV++G GNVALDV RIL+ + LA TDIA +A
Sbjct: 129 VDFVGWYNAHPNFHERSPDL-SGSRAVVIGNGNVALDVTRILITDPDVLAFTDIADHALE 187
Query: 197 ALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256
+L I +V +VGRRGP+Q A T ELRE+ I+ + V + L + +DE +
Sbjct: 188 SLRPRGIEEVVIVGRRGPLQTAFTTLELRELADIEGVDVLVDPAQL-EGISDENAAAAGK 246
Query: 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316
R+ ++L P G R + F F P + G V + + L
Sbjct: 247 TTRQNIKVLRDYTVRT---PKPGHRRIVFRFLTSPIEI----KGKGKVERIVLGQNELVT 299
Query: 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376
G+ A TG E+L ++++SIGY+ VP GLPFD+ +PN GRV +
Sbjct: 300 DDNGRVAAKDTGVREELPAQLIVRSIGYRGVPTPGLPFDDSSVTIPNTNGRV------NG 353
Query: 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
S+ E YV GW+KRGPTG+I TN +++TV +L
Sbjct: 354 SRNE---YVVGWIKRGPTGVIGTNKKDSQDTVDTL 385
|
May serve as electron transfer protein and supply electrons to P450 systems. Mycobacterium leprae (taxid: 1769) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P65528|FPRB_MYCTU Probable ferredoxin/ferredoxin--NADP reductase OS=Mycobacterium tuberculosis GN=fprB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/400 (40%), Positives = 216/400 (54%), Gaps = 37/400 (9%)
Query: 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQ 77
PL V VVGSGPA Y A++ L Q QV++ ++LPTP+GLVRSGVAPDH TK V
Sbjct: 111 QPLTVAVVGSGPAAMYAADELL-VQQGVQVNVFEKLPTPYGLVRSGVAPDHQNTKRVTRL 169
Query: 78 FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
F R+ H R F+ NV +G + +EL +H V+ A GA DR L I G L G +A
Sbjct: 170 FDRIAGHRRFRFYLNVEIGKHLGHAELLAHHHAVLYAVGAPDDRRLTIDGMGLPGTGTAT 229
Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197
E V W NGHPD +L DL S + VI+G GNVALDVAR+L ELA TDIA +A +A
Sbjct: 230 ELVAWLNGHPDFNDLPVDL-SHERVVIIGNGNVALDVARVLAADPHELAATDIADHALSA 288
Query: 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN--- 254
L S++R+V + RRGP +A T L E++G+ D++ P D + + +
Sbjct: 289 LRNSAVREVVVAARRGPAHSAFT---LPELIGLTA------GADVVLDPGDHQRVLDDLA 339
Query: 255 ---SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311
+ R E+LS ++ +G+ + + P L R+G GV F
Sbjct: 340 IVADPLTRNKLEILSTLGDGSAPARRVGRPRIRLAYRLTPRRVL-GQRRAG---GVQFSV 395
Query: 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371
T GT E LD G+VL SIGY+ P+ LPFD +VPN GRV+
Sbjct: 396 T-------------GTDELRQLDAGLVLTSIGYRGKPIPDLPFDEQAALVPNDGGRVIDP 442
Query: 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
+G+ G YV GW+KRGPTG I TN C+ +TV +L
Sbjct: 443 GTGEPVP---GAYVAGWIKRGPTGFIGTNKSCSMQTVQAL 479
|
Mycobacterium tuberculosis (taxid: 1773) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P65529|FPRB_MYCBO Probable ferredoxin/ferredoxin--NADP reductase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fprB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/400 (40%), Positives = 216/400 (54%), Gaps = 37/400 (9%)
Query: 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQ 77
PL V VVGSGPA Y A++ L Q QV++ ++LPTP+GLVRSGVAPDH TK V
Sbjct: 111 QPLTVAVVGSGPAAMYAADELL-VQQGVQVNVFEKLPTPYGLVRSGVAPDHQNTKRVTRL 169
Query: 78 FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
F R+ H R F+ NV +G + +EL +H V+ A GA DR L I G L G +A
Sbjct: 170 FDRIAGHRRFRFYLNVEIGKHLGHAELLAHHHAVLYAVGAPDDRRLTIDGMGLPGTGTAT 229
Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197
E V W NGHPD +L DL S + VI+G GNVALDVAR+L ELA TDIA +A +A
Sbjct: 230 ELVAWLNGHPDFNDLPVDL-SHERVVIIGNGNVALDVARVLAADPHELAATDIADHALSA 288
Query: 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN--- 254
L S++R+V + RRGP +A T L E++G+ D++ P D + + +
Sbjct: 289 LRNSAVREVVVAARRGPAHSAFT---LPELIGLTA------GADVVLDPGDHQRVLDDLA 339
Query: 255 ---SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311
+ R E+LS ++ +G+ + + P L R+G GV F
Sbjct: 340 IVADPLTRNKLEILSTLGDGSAPARRVGRPRIRLAYRLTPRRVL-GQRRAG---GVQFSV 395
Query: 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371
T GT E LD G+VL SIGY+ P+ LPFD +VPN GRV+
Sbjct: 396 T-------------GTDELRQLDAGLVLTSIGYRGKPIPDLPFDEQAALVPNDGGRVIDP 442
Query: 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
+G+ G YV GW+KRGPTG I TN C+ +TV +L
Sbjct: 443 GTGEPVP---GAYVAGWIKRGPTGFIGTNKSCSMQTVQAL 479
|
Mycobacterium bovis (taxid: 1765) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 415 | ||||||
| 255573812 | 492 | NADPH:adrenodoxin oxidoreductase, mitoch | 0.987 | 0.833 | 0.812 | 0.0 | |
| 225445178 | 486 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.985 | 0.841 | 0.819 | 0.0 | |
| 356513151 | 484 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.983 | 0.842 | 0.796 | 0.0 | |
| 356553385 | 484 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.983 | 0.842 | 0.793 | 0.0 | |
| 449432374 | 486 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.990 | 0.845 | 0.768 | 0.0 | |
| 449487548 | 486 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.990 | 0.845 | 0.768 | 0.0 | |
| 224065242 | 496 | predicted protein [Populus trichocarpa] | 0.951 | 0.796 | 0.830 | 0.0 | |
| 297802792 | 484 | hypothetical protein ARALYDRAFT_913213 [ | 0.990 | 0.849 | 0.753 | 0.0 | |
| 22329089 | 483 | ferredoxin--NADP+ reductase [Arabidopsis | 0.990 | 0.850 | 0.752 | 1e-177 | |
| 357520949 | 452 | NADPH:adrenodoxin oxidoreductase [Medica | 0.896 | 0.823 | 0.804 | 1e-174 |
| >gi|255573812|ref|XP_002527825.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative [Ricinus communis] gi|223532749|gb|EEF34528.1| NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/410 (81%), Positives = 368/410 (89%)
Query: 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
YKA WLSR F+ L+S+PLRVCVVGSGPAGFYTAEK LKAH+EA++DIIDRLPTPFGLVR
Sbjct: 10 YKAMKWLSRRFSNLTSHPLRVCVVGSGPAGFYTAEKMLKAHREAEIDIIDRLPTPFGLVR 69
Query: 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
SGVAPDHPETKIVINQFSR+VQ+ERCSFFGNVTLGSS+SL+ELR LYHVVVLAYGAESDR
Sbjct: 70 SGVAPDHPETKIVINQFSRLVQNERCSFFGNVTLGSSISLAELRDLYHVVVLAYGAESDR 129
Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
ALGIPGEDL+G+HSAREFVWWYNGHPD KNL+PDLK TDTAVILGQGNVALD RILLRP
Sbjct: 130 ALGIPGEDLLGIHSAREFVWWYNGHPDCKNLNPDLKGTDTAVILGQGNVALDATRILLRP 189
Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
T ELA TDIA +A ALE S IRKVYLVGRRGPVQAACTAKELRE+LGIK+L++HI+E D
Sbjct: 190 TAELARTDIACHALAALEQSCIRKVYLVGRRGPVQAACTAKELREVLGIKDLFIHIKEAD 249
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERS 301
L+KS DEEE+K SRIQRR+Y+LLSKAAAS S P GQRELHFVFFRKPD FL+S R
Sbjct: 250 LLKSSDDEEELKGSRIQRRIYDLLSKAAASGPSHPSSGQRELHFVFFRKPDRFLDSEVRI 309
Query: 302 GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361
GHV+GVHFEKT LKG PGKQ AVGTG+FEDLDCGMVLKS+GYKSVPV+GLPFD+ KG+V
Sbjct: 310 GHVAGVHFEKTVLKGISPGKQVAVGTGKFEDLDCGMVLKSVGYKSVPVDGLPFDHQKGVV 369
Query: 362 PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
P++ GRVL SGDS +E GLYVCGWLKRGPTGIIATNLYCAEETV+S+
Sbjct: 370 PSVGGRVLTEASGDSKLLEKGLYVCGWLKRGPTGIIATNLYCAEETVASI 419
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445178|ref|XP_002280736.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Vitis vinifera] gi|297738792|emb|CBI28037.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/411 (81%), Positives = 371/411 (90%), Gaps = 2/411 (0%)
Query: 3 KARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
+A+ W SRSF++LSSNPLRVCVVGSGPAGFYTAEK LKAHQ A++DI+DRLPTPFGLVRS
Sbjct: 5 RAKTWFSRSFSSLSSNPLRVCVVGSGPAGFYTAEKMLKAHQGAEIDIVDRLPTPFGLVRS 64
Query: 63 GVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRA 122
GVAPDHPETKIV+NQFSRV Q++RCSF GNVTLGSS+SLSELR+LYHVVVLAYGAESDR
Sbjct: 65 GVAPDHPETKIVVNQFSRVAQNDRCSFIGNVTLGSSISLSELRELYHVVVLAYGAESDRV 124
Query: 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPT 182
LGIPGED G+HSAREFVWWYNGHPD KNL PDLKSTDTAVILGQGNVALDVARILLRPT
Sbjct: 125 LGIPGEDFAGIHSAREFVWWYNGHPDCKNLDPDLKSTDTAVILGQGNVALDVARILLRPT 184
Query: 183 EELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242
ELA TDIAS+A ALE SSIRKVYLVGRRGPVQAACTAKELREILGIK+L VHI+E DL
Sbjct: 185 MELAKTDIASHALAALEESSIRKVYLVGRRGPVQAACTAKELREILGIKDLNVHIQESDL 244
Query: 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG 302
+KSP DEEE+KN+RIQRRVYELLSK AAS S GQRELHFVFFRKPD FL+S +R+G
Sbjct: 245 LKSPADEEELKNNRIQRRVYELLSK-AASGPSLTSSGQRELHFVFFRKPDRFLDSGDRNG 303
Query: 303 HVSGVHFEKTALKGG-GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361
HV+GVH EKT LK G GKQ AVGTG+FEDL+CG+VLKSIGYKSVP+NGLPFD+HKGIV
Sbjct: 304 HVAGVHCEKTILKESVGSGKQIAVGTGQFEDLECGIVLKSIGYKSVPINGLPFDHHKGIV 363
Query: 362 PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412
PNI+GRVL N +G+ + VE GLYVCGWLKRGPTGIIATNLYCAEETV+S+S
Sbjct: 364 PNIQGRVLSNTTGNPTLVEEGLYVCGWLKRGPTGIIATNLYCAEETVASIS 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513151|ref|XP_003525277.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/412 (79%), Positives = 361/412 (87%), Gaps = 4/412 (0%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
+ AR WL RS +SSNPLRVCVVGSGPAGFYTAEK LKAHQ+AQVDIIDRLPTPFGLV
Sbjct: 6 LLGARRWLCRS---ISSNPLRVCVVGSGPAGFYTAEKMLKAHQQAQVDIIDRLPTPFGLV 62
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
RSGVAPDHPETKIVINQFSRV HERCSF GNVTLGSS+SLSELR+LYHVVVLAYGAESD
Sbjct: 63 RSGVAPDHPETKIVINQFSRVAHHERCSFLGNVTLGSSISLSELRELYHVVVLAYGAESD 122
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R+LGIPGE+L G+HSAREFVWWYNGHPDG+NL PDLKSTDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLGIPGENLKGIHSAREFVWWYNGHPDGRNLEPDLKSTDTAVILGQGNVALDVARILLR 182
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
PT ELATTDIAS+A LE SSIR VYLVGRRGP QAACTAKELREILGI N+ + I+E
Sbjct: 183 PTTELATTDIASHALATLEESSIRVVYLVGRRGPAQAACTAKELREILGIHNVDIFIQES 242
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
DL+ +P DEEE+K++RIQRRV+ELLSKAA S L QRELHFVFFRKP+SF ES +R
Sbjct: 243 DLLLTPVDEEELKSNRIQRRVHELLSKAATSKPKHACLNQRELHFVFFRKPNSFQESKDR 302
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
+GHVSG+HFEKT L+G PGKQ AVG GEFED+ CGM LKSIGY+SVPV+GLPFD+ KG+
Sbjct: 303 AGHVSGMHFEKTVLQGVSPGKQIAVGAGEFEDIKCGMALKSIGYRSVPVDGLPFDHKKGV 362
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412
VPN RGRVL + S D S +E GLYVCGWL+RGPTGIIATNLYCAEETVSS+S
Sbjct: 363 VPNDRGRVLSDPS-DPSVLEKGLYVCGWLRRGPTGIIATNLYCAEETVSSIS 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553385|ref|XP_003545037.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/412 (79%), Positives = 358/412 (86%), Gaps = 4/412 (0%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
+ AR WL RS +SSNPLRVCVVGSGPAGFYTAEK LKAHQ+A VDIIDRL TPFGLV
Sbjct: 6 LLGARRWLCRS---ISSNPLRVCVVGSGPAGFYTAEKMLKAHQQAHVDIIDRLSTPFGLV 62
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
RSGVAPDHPETKIVINQFSRV HERCSF GNVTLGSS+SLSELR LYHVVVLAYGAESD
Sbjct: 63 RSGVAPDHPETKIVINQFSRVAHHERCSFLGNVTLGSSISLSELRDLYHVVVLAYGAESD 122
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R+LGIPGE+L G+HSAREFVWWYNGHPDG+NL PDLKSTDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLGIPGENLKGIHSAREFVWWYNGHPDGRNLEPDLKSTDTAVILGQGNVALDVARILLR 182
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
PT ELATTDIAS+A LE SSIR VYLVGRRGP QAACTAKELREILGI N+ + I+E
Sbjct: 183 PTTELATTDIASHALATLEESSIRVVYLVGRRGPAQAACTAKELREILGIHNVDIFIQES 242
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
DL+ +P DEEE+K++RIQRRV+ELLSKAA S L QRELHFVFFRKP+SF ES +R
Sbjct: 243 DLLLTPVDEEELKSNRIQRRVHELLSKAATSKPKHACLNQRELHFVFFRKPNSFQESKDR 302
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
+GHVSG+HFEKT L+G PGKQ AVG GEFED+ CGM LKSIGY+SVPV+GLPFD+ KG+
Sbjct: 303 AGHVSGMHFEKTVLQGVSPGKQIAVGAGEFEDIKCGMALKSIGYRSVPVDGLPFDHKKGV 362
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412
VPN RGRVL + S D S +E GLYVCGWLKRGPTGIIATNLYCAEETVSS+S
Sbjct: 363 VPNDRGRVLSDPS-DPSVLEKGLYVCGWLKRGPTGIIATNLYCAEETVSSIS 413
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432374|ref|XP_004133974.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/411 (76%), Positives = 359/411 (87%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
+ +ARA RSF+ +S+P +CVVGSGPAGFYTAEK LKA AQVDIIDRLPTPFGLV
Sbjct: 3 LSRARALFCRSFSTFASHPTHICVVGSGPAGFYTAEKLLKALPNAQVDIIDRLPTPFGLV 62
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
RSGVAPDHPETKIV+NQF+RV QH+RCSFFGN+ LGSS+SL +LR+LYH VVLAYGAESD
Sbjct: 63 RSGVAPDHPETKIVVNQFTRVAQHQRCSFFGNIKLGSSISLLDLRELYHTVVLAYGAESD 122
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R+L IPGEDL G+ SAREFVWWYNGHPD +NL+P LK+TDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLKIPGEDLCGIQSAREFVWWYNGHPDCRNLNPGLKATDTAVILGQGNVALDVARILLR 182
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
PT ELA+TDIAS+A AL+ SSIRKV LVGRRGPVQAACTAKELRE+LGIKNL++HI+E
Sbjct: 183 PTSELASTDIASHALEALQESSIRKVLLVGRRGPVQAACTAKELREVLGIKNLHIHIQEA 242
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
DL+KSPTDEEE+KNSRIQRRVYELL+KAAAS G RELHFVFFRKP+ FL S ++
Sbjct: 243 DLLKSPTDEEEVKNSRIQRRVYELLAKAAASGPPHSGTGLRELHFVFFRKPEEFLSSVDK 302
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
HV+GV FEKT L+G PGKQ A GTGEFEDLDC MVLKSIGYKSVP++GLPFD+ KGI
Sbjct: 303 KDHVAGVRFEKTVLEGSSPGKQIARGTGEFEDLDCQMVLKSIGYKSVPIDGLPFDHQKGI 362
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
VPNI GRV+ N+SGD+ Q+E GLYVCGWLKRGP+GIIATNLYCAEETV+S+
Sbjct: 363 VPNISGRVVSNVSGDAIQLEEGLYVCGWLKRGPSGIIATNLYCAEETVASI 413
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449487548|ref|XP_004157681.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/411 (76%), Positives = 358/411 (87%)
Query: 1 MYKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60
+ +ARA RSF+ +S+P +CVVGSGPAGFYTAEK LKA AQVDIIDRLPTPFGLV
Sbjct: 3 LSRARALFCRSFSTFASHPTHICVVGSGPAGFYTAEKLLKALPNAQVDIIDRLPTPFGLV 62
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
RSGVAPDHPETKIV+NQF+RV QH+RCSFFGN+ LGSS+SL +LR+LYH VVLAYGAESD
Sbjct: 63 RSGVAPDHPETKIVVNQFTRVAQHQRCSFFGNIKLGSSISLLDLRELYHTVVLAYGAESD 122
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R+L IPGEDL G+ SAREFVWWYNGHPD +NL+P LK+TDTAVILGQGNVALDVARILLR
Sbjct: 123 RSLKIPGEDLCGIQSAREFVWWYNGHPDCRNLNPGLKATDTAVILGQGNVALDVARILLR 182
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
PT ELA+TDIAS+A AL+ SSIRKV LVGRRGPVQAACTAKELRE+LGIKNL++HI+E
Sbjct: 183 PTSELASTDIASHALEALQESSIRKVLLVGRRGPVQAACTAKELREVLGIKNLHIHIQEA 242
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300
DL+KSPTDEEE+KNSRIQRRVYELL+KAAAS G RELHFVFFRKP+ FL S ++
Sbjct: 243 DLLKSPTDEEEVKNSRIQRRVYELLAKAAASGPPHSGTGLRELHFVFFRKPEEFLSSVDK 302
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
HV+GV FEKT L+G PGKQ A GTGEFEDLDC MVLKSIGYKSVP++ LPFD+ KGI
Sbjct: 303 KDHVAGVRFEKTVLEGSSPGKQIARGTGEFEDLDCQMVLKSIGYKSVPIDDLPFDHQKGI 362
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
VPNI GRV+ NISGD+ Q+E GLYVCGWLKRGP+GIIATNLYCAEETV+S+
Sbjct: 363 VPNISGRVVSNISGDAIQLEKGLYVCGWLKRGPSGIIATNLYCAEETVASI 413
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065242|ref|XP_002301734.1| predicted protein [Populus trichocarpa] gi|222843460|gb|EEE81007.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/395 (83%), Positives = 356/395 (90%)
Query: 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQ 77
NPLRVCVVG+GPAGFYTAEK LKAHQ A+VDIIDRLPTPFGLVRSGVAPDHP+TKIV+NQ
Sbjct: 30 NPLRVCVVGTGPAGFYTAEKMLKAHQGAEVDIIDRLPTPFGLVRSGVAPDHPDTKIVMNQ 89
Query: 78 FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
FS+V QHERCSFFGNVTLGSSVSLSELR+LYHVVVLAYGAESDRALGIPGE L G+HSAR
Sbjct: 90 FSKVAQHERCSFFGNVTLGSSVSLSELRELYHVVVLAYGAESDRALGIPGEYLSGIHSAR 149
Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197
EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILL+ T LATTDIAS+A A
Sbjct: 150 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLQSTSVLATTDIASHALEA 209
Query: 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257
LE SSIRKVYLVGRRGP QAACTAKELRE+LGIK+L +HI E DL KSP DEE +KN+RI
Sbjct: 210 LEQSSIRKVYLVGRRGPAQAACTAKELREVLGIKDLCIHINEVDLRKSPEDEEVLKNNRI 269
Query: 258 QRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317
RRVYELLSKAAASA S P QRELHFVFFRKPD FL+S E SG V+GVHFEKT LK
Sbjct: 270 HRRVYELLSKAAASAPSHPSSSQRELHFVFFRKPDRFLDSGEGSGRVAGVHFEKTMLKAV 329
Query: 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377
GPG+Q AVGTG +EDLDCG+VLKSIGYKSVPV+GLPFD+ KG+VPNI+GRVL + SGD +
Sbjct: 330 GPGRQIAVGTGSYEDLDCGLVLKSIGYKSVPVDGLPFDHEKGVVPNIKGRVLADTSGDPT 389
Query: 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412
+E GLYVCGWLKRGPTGIIATNLYCAEETV+S+S
Sbjct: 390 LLEKGLYVCGWLKRGPTGIIATNLYCAEETVASIS 424
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802792|ref|XP_002869280.1| hypothetical protein ARALYDRAFT_913213 [Arabidopsis lyrata subsp. lyrata] gi|297315116|gb|EFH45539.1| hypothetical protein ARALYDRAFT_913213 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/413 (75%), Positives = 352/413 (85%), Gaps = 2/413 (0%)
Query: 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
Y AR +SR +++SS PL VC+VGSGPAG YTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct: 4 YLARYMVSRYLSSVSSRPLHVCIVGSGPAGLYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63
Query: 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
SGVAPDHPETKI INQFSRV +HERCSF+GNV LGS + LSELR LYHVVVLAYGAESD+
Sbjct: 64 SGVAPDHPETKIAINQFSRVAKHERCSFYGNVKLGSDLLLSELRDLYHVVVLAYGAESDK 123
Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
LGIPGE L G++SAREFVWWYNGHPD +L PDLKS+DTAVILGQGNVALDVARILLRP
Sbjct: 124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKSSDTAVILGQGNVALDVARILLRP 183
Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
T ELA+TDIA +A + LE SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL + I+E D
Sbjct: 184 TTELASTDIARHALSVLEESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLRIRIKETD 243
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSK--AAASASSQPMLGQRELHFVFFRKPDSFLESNE 299
L +P DEEEMKNSR ++R+YELLSK AAA+ +S+ QRELHFVFFR+PD FLES+E
Sbjct: 244 LSLTPADEEEMKNSRARKRIYELLSKAAAAAAGTSEADPDQRELHFVFFRQPDRFLESDE 303
Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359
R GHVSGV+ EKT L+ G GKQ AVGTGEFEDL+C MVLK+IGYKSVP+NGLPFD+ KG
Sbjct: 304 RKGHVSGVNLEKTILESVGSGKQIAVGTGEFEDLNCSMVLKAIGYKSVPINGLPFDHKKG 363
Query: 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412
+VPN+RGRV+ SGD SQ E GLYVCGWLKRGP GIIATNLYCAEETV S+S
Sbjct: 364 VVPNVRGRVVSQTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEETVGSIS 416
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329089|ref|NP_194962.2| ferredoxin--NADP+ reductase [Arabidopsis thaliana] gi|17481351|dbj|BAB79228.1| MFDR [Arabidopsis thaliana] gi|28192433|gb|AAL82814.1| NADP adrenodoxin-like ferredoxin reductase [Arabidopsis thaliana] gi|332660646|gb|AEE86046.1| ferredoxin--NADP+ reductase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 310/412 (75%), Positives = 355/412 (86%), Gaps = 1/412 (0%)
Query: 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
Y AR +SR F++ SS PL VC+VGSGPAGFYTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct: 4 YLARYMVSRYFSSASSRPLHVCIVGSGPAGFYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63
Query: 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
SGVAPDHPETKI INQFSRV QHERCSF GNV LGS +SLSELR LYHVVVLAYGAESD+
Sbjct: 64 SGVAPDHPETKIAINQFSRVAQHERCSFIGNVKLGSDLSLSELRDLYHVVVLAYGAESDK 123
Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
LGIPGE L G++SAREFVWWYNGHPD +L PDLK++D+AVILGQGNVALDVARILLRP
Sbjct: 124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRP 183
Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
T ELA+TDIA++A +AL+ SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL++ I++ D
Sbjct: 184 TTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTD 243
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM-LGQRELHFVFFRKPDSFLESNER 300
L +P DEEEMK SR ++R+YELLSKAAA+A + QRELHFVFFR+PD FLES+ER
Sbjct: 244 LSVTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDER 303
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
GHVSGV+ +KT L+ G GKQ AVGTGEFEDL+C MVLK+IGYKSVPVNGLPFD+ KG+
Sbjct: 304 KGHVSGVNLQKTILESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGV 363
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412
VPN++GRV+ + SGD SQ E GLYVCGWLKRGP GIIATNLYCAEETV S+S
Sbjct: 364 VPNVKGRVVSHTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEETVGSIS 415
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520949|ref|XP_003630763.1| NADPH:adrenodoxin oxidoreductase [Medicago truncatula] gi|355524785|gb|AET05239.1| NADPH:adrenodoxin oxidoreductase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/373 (80%), Positives = 331/373 (88%), Gaps = 1/373 (0%)
Query: 39 LKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98
LKA Q+AQVDIIDRLPTPFGLVRSGVAPDHPETKIV+NQFSRV QHERCSFFGNVTLGS+
Sbjct: 2 LKASQQAQVDIIDRLPTPFGLVRSGVAPDHPETKIVVNQFSRVAQHERCSFFGNVTLGSN 61
Query: 99 VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS 158
VSL+ELR+LYHVVVLAYGAESDR+LGIPGE+L G+ SAREFVWWYNGHPDG+NL PDLKS
Sbjct: 62 VSLAELRKLYHVVVLAYGAESDRSLGIPGENLKGILSAREFVWWYNGHPDGRNLDPDLKS 121
Query: 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA 218
DTAVILGQGNVALDVARILLRPT ELATTDIAS+A + LE SSIR VYLVGRRGP QAA
Sbjct: 122 IDTAVILGQGNVALDVARILLRPTTELATTDIASHALSTLEESSIRVVYLVGRRGPAQAA 181
Query: 219 CTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPML 278
CTAKELRE+LGIKNL V I+E DL +PTDEEE+K++RI RR++ELLSKAA S L
Sbjct: 182 CTAKELREVLGIKNLDVSIQESDLHLTPTDEEELKSNRIHRRIFELLSKAATSRPIHAGL 241
Query: 279 GQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMV 338
QR+L FVFFRKPDSF ES + +GHVSGV FEKT LKG GPGKQ AVGTGEFEDL CGMV
Sbjct: 242 NQRQLRFVFFRKPDSFQESKDSTGHVSGVLFEKTVLKGVGPGKQIAVGTGEFEDLKCGMV 301
Query: 339 LKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398
LKSIGYKSVPV+GLPFD+ KGIVPN +GRVL + S D++ +E GLYVCGWLKRGPTGI+A
Sbjct: 302 LKSIGYKSVPVDGLPFDHKKGIVPNDKGRVLSDTS-DTAVLEEGLYVCGWLKRGPTGIVA 360
Query: 399 TNLYCAEETVSSL 411
TNLYCAEETVSS+
Sbjct: 361 TNLYCAEETVSSI 373
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 415 | ||||||
| TAIR|locus:2127811 | 483 | AT4G32360 [Arabidopsis thalian | 0.990 | 0.850 | 0.737 | 1.2e-163 | |
| UNIPROTKB|F1NRB1 | 466 | FDXR "NADPH:adrenodoxin oxidor | 0.932 | 0.830 | 0.466 | 9.9e-87 | |
| MGI|MGI:104724 | 494 | Fdxr "ferredoxin reductase" [M | 0.906 | 0.761 | 0.478 | 9.9e-87 | |
| UNIPROTKB|P22570 | 491 | FDXR "NADPH:adrenodoxin oxidor | 0.901 | 0.761 | 0.489 | 6.9e-86 | |
| UNIPROTKB|E7EQC1 | 522 | FDXR "NADPH:adrenodoxin oxidor | 0.881 | 0.701 | 0.496 | 1.4e-85 | |
| UNIPROTKB|P08165 | 492 | FDXR "NADPH:adrenodoxin oxidor | 0.901 | 0.760 | 0.476 | 4.9e-85 | |
| RGD|621648 | 494 | Fdxr "ferredoxin reductase" [R | 0.906 | 0.761 | 0.471 | 6.2e-85 | |
| UNIPROTKB|P56522 | 494 | Fdxr "NADPH:adrenodoxin oxidor | 0.906 | 0.761 | 0.471 | 6.2e-85 | |
| UNIPROTKB|J3QQX3 | 463 | FDXR "NADPH:adrenodoxin oxidor | 0.503 | 0.451 | 0.606 | 8.2e-85 | |
| UNIPROTKB|E2RDC3 | 492 | FDXR "NADPH:adrenodoxin oxidor | 0.889 | 0.75 | 0.480 | 1e-84 |
| TAIR|locus:2127811 AT4G32360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1593 (565.8 bits), Expect = 1.2e-163, P = 1.2e-163
Identities = 304/412 (73%), Positives = 348/412 (84%)
Query: 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61
Y AR +SR F++ SS PL VC+VGSGPAGFYTA+K LKAH+ A VDIIDRLPTPFGLVR
Sbjct: 4 YLARYMVSRYFSSASSRPLHVCIVGSGPAGFYTADKVLKAHEGAHVDIIDRLPTPFGLVR 63
Query: 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDR 121
SGVAPDHPETKI INQFSRV QHERCSF GNV LGS +SLSELR LYHVVVLAYGAESD+
Sbjct: 64 SGVAPDHPETKIAINQFSRVAQHERCSFIGNVKLGSDLSLSELRDLYHVVVLAYGAESDK 123
Query: 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
LGIPGE L G++SAREFVWWYNGHPD +L PDLK++D+AVILGQGNVALDVARILLRP
Sbjct: 124 DLGIPGESLSGIYSAREFVWWYNGHPDYSSLKPDLKTSDSAVILGQGNVALDVARILLRP 183
Query: 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
T ELA+TDIA++A +AL+ SSIRKVYL+GRRGPVQAA TAKELRE+LGIKNL++ I++ D
Sbjct: 184 TTELASTDIATHALSALKESSIRKVYLIGRRGPVQAALTAKELREVLGIKNLHIRIKQTD 243
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLXXXXXXX-XXQPMLGQRELHFVFFRKPDSFLESNER 300
L +P DEEEMK SR ++R+YELL + QRELHFVFFR+PD FLES+ER
Sbjct: 244 LSVTPADEEEMKTSRARKRIYELLSKAAAAAKTSEADPDQRELHFVFFRQPDQFLESDER 303
Query: 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360
GHVSGV+ +KT L+ G GKQ AVGTGEFEDL+C MVLK+IGYKSVPVNGLPFD+ KG+
Sbjct: 304 KGHVSGVNLQKTILESVGTGKQIAVGTGEFEDLNCSMVLKAIGYKSVPVNGLPFDHKKGV 363
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412
VPN++GRV+ + SGD SQ E GLYVCGWLKRGP GIIATNLYCAEETV S+S
Sbjct: 364 VPNVKGRVVSHTSGDISQTEPGLYVCGWLKRGPVGIIATNLYCAEETVGSIS 415
|
|
| UNIPROTKB|F1NRB1 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 193/414 (46%), Positives = 260/414 (62%)
Query: 5 RAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV 64
R WLS A P R+CVVGSGPAGFYTA+ LK H AQVDI ++LP PFGLVR GV
Sbjct: 2 RRWLSSRAPA----P-RICVVGSGPAGFYTAQHILKHHDLAQVDIYEKLPVPFGLVRFGV 56
Query: 65 APDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALG 124
APDHPE K VIN F+ + +RC+++GNVT+G V++ EL+Q YH VVL+YGAE +R LG
Sbjct: 57 APDHPEVKNVINTFTHTARSDRCAYYGNVTVGRDVTVGELQQAYHAVVLSYGAEDNRVLG 116
Query: 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEE 184
IPGE+L GV+SAR FV WYNG P+ ++L PDL S +TA+ILG GNVALD+ARILL P +
Sbjct: 117 IPGENLSGVYSARAFVGWYNGLPENRDLKPDL-SCETALILGHGNVALDIARILLSPLDF 175
Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
L TDI + AL S +++V+L GRRGP+Q A T KELRE++ + + D
Sbjct: 176 LRKTDITDCSLAALACSKVKRVWLAGRRGPLQVAFTIKELREMINLPGTQPVLNPADFTG 235
Query: 245 SPTDEEEMKNS-RIQRRVYELLXXXXXXXXXQP-MLGQ----RELHFVFFRKPDSFLESN 298
E +K++ R ++R+ EL+ + ++ Q R+ F R P L +
Sbjct: 236 L---ENAVKDAPRPRKRLTELMIKTALEKHREKAVMAQAAVPRQWGLKFQRSPQEVLPTA 292
Query: 299 ERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNH 357
+ V GV T L+G G + AV TG+ E+L+CG+VL SIGY+S+P++ +PFD
Sbjct: 293 DGM-RVRGVRMALTRLEGSGDSAK-AVPTGDMEELECGLVLSSIGYRSLPLDPAVPFDTQ 350
Query: 358 KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
I+PN GRV+ G GLY GW+KRGP G+I T + + +T S+
Sbjct: 351 HSIIPNNLGRVM----GVP-----GLYCSGWVKRGPVGVIITTMNDSFDTAQSV 395
|
|
| MGI|MGI:104724 Fdxr "ferredoxin reductase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 191/399 (47%), Positives = 250/399 (62%)
Query: 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
+ F+ P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHP
Sbjct: 32 QKFSTQEKTP-QICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPDHP 90
Query: 70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
E K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + LGIPGE+
Sbjct: 91 EVKNVINTFTQTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPGEE 150
Query: 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L TD
Sbjct: 151 LPGVVSARAFVGWYNGLPENQELAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209
Query: 190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
I A AL S ++ V++VGRRGP+Q A T KELRE++ + + D + +
Sbjct: 210 ITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGL---Q 266
Query: 250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
+ +K+ R +RR+ ELL + L R FFR P L + +
Sbjct: 267 DRIKDVPRPRRRLTELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPDGQ-R 325
Query: 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVP 362
V+G+ T+L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD G++P
Sbjct: 326 VAGIRLAVTSLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGVIP 384
Query: 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
N GRV+ N+ G LY GW+KRGPTG+I T +
Sbjct: 385 NTEGRVV-NVPG--------LYCSGWVKRGPTGVITTTM 414
|
|
| UNIPROTKB|P22570 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 194/396 (48%), Positives = 243/396 (61%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
F+ P ++CVVGSGPAGFYTA+ LK H +A VDI ++ P PFGLVR GVAPDHPE
Sbjct: 32 FSTQEKTP-QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 89
Query: 72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
K VIN F++ RC+F+GNV +G V++ ELR+ YH VVL+YGAE RAL IPGE+L
Sbjct: 90 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 149
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L TDI
Sbjct: 150 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 208
Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
A L S ++ V+LVGRRGP+Q A T KELRE++ + + D + +E
Sbjct: 209 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKE 268
Query: 252 MKNSRIQRRVYELLXXXXX-----XXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306
+ R +R+ ELL + R FFR P L S + +G
Sbjct: 269 VPRPR--KRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAG 325
Query: 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIR 365
V T L+G + AV TG+ EDL CG+VL SIGYKS PV+ +PFD+ G++PN+
Sbjct: 326 VRLAVTRLEGVDEATR-AVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSKLGVIPNVE 384
Query: 366 GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
GRV+ V GLY GW+KRGPTG+IAT +
Sbjct: 385 GRVM--------DVP-GLYCSGWVKRGPTGVIATTM 411
|
|
| UNIPROTKB|E7EQC1 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 192/387 (49%), Positives = 240/387 (62%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
++CVVGSGPAGFYTA+ LK H +A VDI ++ P PFGLVR GVAPDHPE K VIN F++
Sbjct: 71 QICVVGSGPAGFYTAQHLLK-HPQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFTQ 129
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
RC+F+GNV +G V++ ELR+ YH VVL+YGAE RAL IPGE+L GV SAR FV
Sbjct: 130 TAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAFV 189
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L TDI A L
Sbjct: 190 GWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDITKAALGVLRQ 248
Query: 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260
S ++ V+LVGRRGP+Q A T KELRE++ + + D + +E+ R +R
Sbjct: 249 SRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRPR--KR 306
Query: 261 VYELLXXXXX-----XXXXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315
+ ELL + R FFR P L S + +GV T L+
Sbjct: 307 LTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPD-GRRAAGVRLAVTRLE 365
Query: 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISG 374
G + AV TG+ EDL CG+VL SIGYKS PV+ +PFD+ G++PN+ GRV+
Sbjct: 366 GVDEATR-AVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSKLGVIPNVEGRVM----- 419
Query: 375 DSSQVENGLYVCGWLKRGPTGIIATNL 401
V GLY GW+KRGPTG+IAT +
Sbjct: 420 ---DVP-GLYCSGWVKRGPTGVIATTM 442
|
|
| UNIPROTKB|P08165 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 189/397 (47%), Positives = 246/397 (61%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
F+ P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE
Sbjct: 32 FSTQEQTP-QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEV 90
Query: 72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
K VIN F++ + +RC+F+GNV +G V++ EL+ YH VVL+YGAE +AL IPGE+L
Sbjct: 91 KNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELP 150
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L TDI
Sbjct: 151 GVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDIT 209
Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
A AL S ++ V++VGRRGP+Q A T KELRE++ + + D + ++
Sbjct: 210 EAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGL---QDR 266
Query: 252 MKNS-RIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHVS 305
+K + R ++R+ ELL + R FFR P L S + +
Sbjct: 267 IKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPD-GRRAA 325
Query: 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNI 364
G+ T L+G G + AV TG+ EDL CG+VL SIGYKS P++ +PFD G+VPN+
Sbjct: 326 GIRLAVTRLEGIGEATR-AVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNM 384
Query: 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
GRV+ V GLY GW+KRGPTG+I T +
Sbjct: 385 EGRVV--------DVP-GLYCSGWVKRGPTGVITTTM 412
|
|
| RGD|621648 Fdxr "ferredoxin reductase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 188/399 (47%), Positives = 246/399 (61%)
Query: 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
+ F+ + P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHP
Sbjct: 32 KKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHP 90
Query: 70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
E K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + L IPGE+
Sbjct: 91 EVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEE 150
Query: 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L TD
Sbjct: 151 LPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209
Query: 190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
I A L S ++ V++VGRRGP+Q A T KELRE++ + + D + +
Sbjct: 210 ITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL---Q 266
Query: 250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
+ +K+ R ++R+ ELL + L R FFR P L + +
Sbjct: 267 DRIKDVPRPRKRLTELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPD-GRR 325
Query: 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVP 362
V+G+ T L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD GI+P
Sbjct: 326 VAGIRLAVTRLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGIIP 384
Query: 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
N GRV+ GLY GW+KRGPTG+I T +
Sbjct: 385 NTEGRVVN---------APGLYCSGWVKRGPTGVITTTM 414
|
|
| UNIPROTKB|P56522 Fdxr "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 188/399 (47%), Positives = 246/399 (61%)
Query: 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
+ F+ + P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHP
Sbjct: 32 KKFSTQETTP-QICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHP 90
Query: 70 ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGED 129
E K VIN F++ + +RC+F GNV +G VS+ ELR+ YH VVL+YGAE + L IPGE+
Sbjct: 91 EVKNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEE 150
Query: 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTD 189
L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L TD
Sbjct: 151 LPGVVSARAFVGWYNGLPENQKLAPDL-SCDTAVILGQGNVALDVARILLTPPEHLEKTD 209
Query: 190 IASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249
I A L S ++ V++VGRRGP+Q A T KELRE++ + + D + +
Sbjct: 210 ITEVALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGL---Q 266
Query: 250 EEMKN-SRIQRRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGH 303
+ +K+ R ++R+ ELL + L R FFR P L + +
Sbjct: 267 DRIKDVPRPRKRLTELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPD-GRR 325
Query: 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVP 362
V+G+ T L+G G + AV TG+ EDL CG++L S+GYKS P++ +PFD GI+P
Sbjct: 326 VAGIRLAVTRLEGVGESTR-AVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGIIP 384
Query: 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401
N GRV+ GLY GW+KRGPTG+I T +
Sbjct: 385 NTEGRVVN---------APGLYCSGWVKRGPTGVITTTM 414
|
|
| UNIPROTKB|J3QQX3 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
Identities = 128/211 (60%), Positives = 151/211 (71%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET 71
F+ P ++CVVGSGPAGFYTA+ LK H +A VDI ++ P PFGLVR GVAPDHPE
Sbjct: 32 FSTQEKTP-QICVVGSGPAGFYTAQHLLKQHPQAHVDIYEKQPVPFGLVRFGVAPDHPEV 90
Query: 72 KIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
K VIN F++ RC+F+GNV +G V++ ELR+ YH VVL+YGAE RAL IPGE+L
Sbjct: 91 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 150
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIA 191
GV SAR FV WYNG P+ + L PDL S DTAVILGQGNVALDVARILL P E L TDI
Sbjct: 151 GVCSARAFVGWYNGLPENQELEPDL-SCDTAVILGQGNVALDVARILLTPPEHLERTDIT 209
Query: 192 SYAWTALEGSSIRKVYLVGRRGPVQAACTAK 222
A L S ++ V+LVGRRGP+Q A T K
Sbjct: 210 KAALGVLRQSRVKTVWLVGRRGPLQVAFTIK 240
|
|
| UNIPROTKB|E2RDC3 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 187/389 (48%), Positives = 241/389 (61%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQF 78
P ++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE K VIN F
Sbjct: 38 PPQICVVGSGPAGFYTAQHLLKHHPRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTF 97
Query: 79 SRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE 138
++ + RC+F GNV +G V++ EL+ YH VVL+YGAE +AL IPGE+L GV SAR
Sbjct: 98 TQTARSGRCAFHGNVVVGRDVAVPELQAAYHAVVLSYGAEDHQALEIPGEELPGVFSARA 157
Query: 139 FVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTAL 198
FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P E L TDI A L
Sbjct: 158 FVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPEYLEKTDITEAALGVL 216
Query: 199 EGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQ 258
S ++ V++VGRRGP+Q A T KELRE++ + + D + +E+ R
Sbjct: 217 RQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPTDFLGLQDRIKEVPRPR-- 274
Query: 259 RRVYELLXXXXXXX-----XXQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
+R+ ELL + R FFR P L S + +G+ T
Sbjct: 275 KRLTELLLRTATERPGAEEAARQASASRTWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTR 333
Query: 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNI 372
L+G G + AV TG+ EDL CG+VL S+GYKS P++ +PFD+ +G++PN+ GRV+
Sbjct: 334 LEGVGEAAR-AVPTGDSEDLPCGLVLSSVGYKSRPIDPSVPFDSKRGVIPNMEGRVI--- 389
Query: 373 SGDSSQVENGLYVCGWLKRGPTGIIATNL 401
V GLY GW+KRGPTG+IAT +
Sbjct: 390 -----DVP-GLYCSGWVKRGPTGVIATTM 412
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O32886 | FPRA_MYCLE | 1, ., 1, 8, ., 1, ., 2 | 0.4126 | 0.8963 | 0.8157 | yes | no |
| O05783 | FPRA_MYCTU | 1, ., 1, 8, ., 1, ., 2 | 0.4271 | 0.9036 | 0.8223 | yes | no |
| O59710 | ADRO_SCHPO | 1, ., 1, 8, ., 1, ., 2 | 0.3660 | 0.9228 | 0.8166 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00016707001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (477 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00023903001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (127 aa) | • | • | 0.611 | |||||||
| GSVIVG00016385001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (198 aa) | • | • | 0.557 | |||||||
| GSVIVG00027378001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (347 aa) | • | 0.484 | ||||||||
| GSVIVG00020216001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (251 aa) | • | • | 0.412 | |||||||
| GSVIVG00015145001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (475 aa) | • | • | 0.409 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 415 | |||
| PLN02852 | 491 | PLN02852, PLN02852, ferredoxin-NADP+ reductase | 0.0 | |
| PTZ00188 | 506 | PTZ00188, PTZ00188, adrenodoxin reductase; Provisi | 8e-48 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 4e-38 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 9e-26 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 1e-20 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 4e-16 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 9e-16 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 2e-15 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 2e-15 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 7e-15 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 2e-13 | |
| TIGR01318 | 467 | TIGR01318, gltD_gamma_fam, glutamate synthase smal | 3e-13 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 8e-13 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 7e-12 | |
| PRK12775 | 1006 | PRK12775, PRK12775, putative trifunctional 2-polyp | 3e-11 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 3e-11 | |
| PRK12809 | 639 | PRK12809, PRK12809, putative oxidoreductase Fe-S b | 5e-11 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 8e-11 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 7e-09 | |
| PRK12779 | 944 | PRK12779, PRK12779, putative bifunctional glutamat | 1e-08 | |
| PRK12769 | 654 | PRK12769, PRK12769, putative oxidoreductase Fe-S b | 3e-07 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 1e-05 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 0.001 |
| >gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Score = 756 bits (1953), Expect = 0.0
Identities = 303/418 (72%), Positives = 344/418 (82%), Gaps = 8/418 (1%)
Query: 1 MYKARAWLSRSF-----TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55
+AR WLSR+ ++ +S PL VCVVGSGPAGFYTA+K LKAH A+VDII+RLPT
Sbjct: 3 RLRARTWLSRALSFSNSSSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62
Query: 56 PFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAY 115
PFGLVRSGVAPDHPETK V NQFSRV +R SFFGNVTLG VSLSELR LYHVVVLAY
Sbjct: 63 PFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAY 122
Query: 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175
GAESDR LGIPGEDL GV SAREFVWWYNGHPD +L PDLKS+DTAV+LGQGNVALD A
Sbjct: 123 GAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCA 182
Query: 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235
RILLRPT+ELA+TDIA +A AL GSS+RKVYLVGRRGPVQAACTAKELRE+LG+KN+ V
Sbjct: 183 RILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRV 242
Query: 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295
I+E DL SP DEEE+K SR +RRVYELLSKAAA+ P GQRELHFVFFR P FL
Sbjct: 243 RIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFL 302
Query: 296 ESNERSGHVSGVHFEKTALKG-GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF 354
+S + +GHV+GV E+T L+G G GKQ AVGTGEFEDL CG+VLKSIGYKS+PV+GLPF
Sbjct: 303 DSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPF 362
Query: 355 DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412
D+ +G+VPN+ GRVL + SG + E GLYV GWLKRGPTGII TNL CAEETV+S++
Sbjct: 363 DHKRGVVPNVHGRVLSSASG--ADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIA 418
|
Length = 491 |
| >gnl|CDD|240308 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 8e-48
Identities = 117/421 (27%), Positives = 200/421 (47%), Gaps = 48/421 (11%)
Query: 7 WLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP 66
+ + F + P +V ++G+GP+ Y + LK H+ +VDI ++LP P+GL+R GVAP
Sbjct: 27 FTGKCFFTNEAKPFKVGIIGAGPSALYCCKHLLK-HERVKVDIFEKLPNPYGLIRYGVAP 85
Query: 67 DHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGA-ESDRALGI 125
DH K F V FFGNV +G + + ELR Y+ V+ GA E +G
Sbjct: 86 DHIHVKNTYKTFDPVFLSPNYRFFGNVHVGVDLKMEELRNHYNCVIFCCGASEVSIPIGQ 145
Query: 126 PGEDLI------------GVHSAREFVWWYNGHPDG---KNLSPDLKSTD---TAVILGQ 167
ED G+ AR+ +++YN + K + L S + T++I+G
Sbjct: 146 QDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGN 205
Query: 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227
GNV+LD+ARIL++ ++L+ TDI+S ++ +I+ +Y+VGRRG Q++ T ELRE+
Sbjct: 206 GNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELREL 265
Query: 228 LGIKNLYVHIRED--DL---IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282
+ ++N V + + DL +KS DEE + Q +++ + K +
Sbjct: 266 ISLENTKVILSKKNYDLCCHLKS--DEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTY 323
Query: 283 --LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLK 340
+ F+F+ + + G + V E L P + E + L +V+
Sbjct: 324 KIIEFIFYFEIRQIRPID---GAMKNVELE---LNKNVPMSFSSF--KENKVLVTPLVIF 375
Query: 341 SIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400
+ G+K N N+ + ++ D Q + ++ GW +GP G IA+
Sbjct: 376 ATGFKK--------SN---FAENLYNQSVQMFKEDIGQHKFAIFKAGWFDKGPKGNIASQ 424
Query: 401 L 401
+
Sbjct: 425 I 425
|
Length = 506 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 100/402 (24%), Positives = 142/402 (35%), Gaps = 37/402 (9%)
Query: 17 SNPLRVCVVGSGP-AGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
R VVGSGP A Y A + L + + +P P GLVR GV DH K+
Sbjct: 3 PKDFREAVVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV--DHEAIKL 60
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSL-SELRQLYHVVVLAYGAESDRALGIPGEDLIG 132
+ + R GN+ G+ V EL + A G ++DR IPGE +
Sbjct: 61 IHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGE--LP 118
Query: 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIAS 192
+ V P G + DL S + VALD +L + DI
Sbjct: 119 GSRTGKKVAVIGAGPAGLAAADDL-SRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILD 177
Query: 193 YAWTALEGSSIRKVYLVGRRG-PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251
LE S + + L R G + KE + D E+
Sbjct: 178 RRLELLERSGV-EFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLD------IPGED 230
Query: 252 MKN-----SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306
K + R E+L A + P G+ V D+ ++ + G
Sbjct: 231 AKGVAFALDFLTRLNKEVL-GDFAEDRTPPAKGK---RVVVIGGGDTAMDCA-GTALRLG 285
Query: 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366
+ T E+ + ++S G + V LPF K + N G
Sbjct: 286 AKSVTCFYREDR-----DDETNEWPTWAAQLEVRSAGEEGVE--RLPFVQPKAFIGNEGG 338
Query: 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408
RV G +VE G YV GW +RGP G+I T A +TV
Sbjct: 339 RVTGVKFG---RVEPGEYVDGWGRRGPVGVIGTEKTDAADTV 377
|
Length = 457 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 9e-26
Identities = 89/384 (23%), Positives = 127/384 (33%), Gaps = 137/384 (35%)
Query: 12 FTALSSNPLRVCVVGSGPAGFYTAEK-TLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPE 70
F +V V+G+GPAG A + K + V I + GL+R G+ PE
Sbjct: 133 FKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAGGLLRYGI----PE 185
Query: 71 TKIVINQFSRVVQHE-----------RCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAES 119
++ + +V E R N +G ++L ELR Y V + GA
Sbjct: 186 FRLPKD----IVDREVERLLKLGVEIRT----NTEVGRDITLDELRAGYDAVFIGTGAGL 237
Query: 120 DRALGIPGEDLIGVHSAREF------VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALD 173
R LGIPGE+L GV+SA +F P GK + V++G GN A+D
Sbjct: 238 PRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRV----------VVIGGGNTAMD 287
Query: 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNL 233
AR R G+ V +V RRG
Sbjct: 288 AARTAKR------------------LGA--ESVTIVYRRG-------------------- 307
Query: 234 YVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH--------F 285
EEM AS + E+ F
Sbjct: 308 ---------------REEM------------------PAS------EEEVEHAKEEGVEF 328
Query: 286 VFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344
+ P L G V+GV F + L + G++ G L +V+K+IG
Sbjct: 329 EWLAAPVEILGDE---GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385
Query: 345 KSVPVNGLPFDNHKGIVPNIRGRV 368
N L G+ N G +
Sbjct: 386 TP---NPLILSTTPGLELNRWGTI 406
|
Length = 457 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 1e-20
Identities = 85/378 (22%), Positives = 140/378 (37%), Gaps = 78/378 (20%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V V+G+GPAG A+ + V + +R+ GL+ G+ PD K ++++
Sbjct: 125 KVAVIGAGPAGLAAADDL--SRAGHDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLE 181
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+++ F NV +G ++L EL + Y V LA GA R L IPGED GV A +F+
Sbjct: 182 LLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFL 241
Query: 141 WWYNGHPDGKNLSPDLKST--DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTAL 198
N G V++G G+ A+D A LR
Sbjct: 242 TRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALR------------------ 283
Query: 199 EGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQ 258
LG K+ V ++E
Sbjct: 284 -----------------------------LGAKS--VTCFYR-----EDRDDETNEWPTW 307
Query: 259 RRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG- 317
E+ S G+ + + F +P +F NE G V+GV F +
Sbjct: 308 AAQLEVRS-----------AGEEGVERLPFVQPKAF-IGNEG-GRVTGVKFGRVEPGEYV 354
Query: 318 -GPGKQYAVG-TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375
G G++ VG G + V+ +IG++ +GL + + RGR+ + +
Sbjct: 355 DGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDK--RGRIKVDENLQ 412
Query: 376 SSQVENGLYVCGWLKRGP 393
+ + G++ G RG
Sbjct: 413 QTSIP-GVFAGGDAVRGA 429
|
Length = 457 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-16
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 7/163 (4%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V V+G+GPAG A + KA V + + L P G+V G+ P+ K ++ +
Sbjct: 135 KVAVIGAGPAGLACASELAKAGHS--VTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIK 191
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF- 139
++ +F N +G + +L EL Y V + GA + + IPGE+L GV+SA +F
Sbjct: 192 TLKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFL 251
Query: 140 --VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
+ +P + + + V++G GN A+D AR LR
Sbjct: 252 TRANLMKAYEFPHADTP-VYAGKSVVVIGGGNTAVDSARTALR 293
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 9e-16
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 6/163 (3%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V VVGSGPAG A++ +A V + +R GL+ G+ P+ K ++++
Sbjct: 145 KVAVVGSGPAGLAAADQLNRAGHT--VTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRID 201
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
++ E F N +G +S EL++ + VVLA GA R L IPG +L G+H A EF+
Sbjct: 202 LLSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFL 261
Query: 141 WWYNGHPDGKNLS-PDLKSTD--TAVILGQGNVALDVARILLR 180
GK+ V++G G+ D LR
Sbjct: 262 PSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLR 304
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 68/245 (27%), Positives = 96/245 (39%), Gaps = 62/245 (25%)
Query: 16 SSNPLRVCVVGSGPAGFYTAEKTL--KAHQEAQVDIIDRLPTPFGL-------------- 59
+V ++G+GPAG A L ++ V + D+LP P GL
Sbjct: 15 PPTGKKVAIIGAGPAGL-AAAGYLACLGYE---VHVYDKLPEPGGLMLFGIPEFRIPIER 70
Query: 60 VRSGV-------APDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVV 112
VR GV H TK+ + + E F + VSL EL + Y V+
Sbjct: 71 VREGVKELEEAGVVFHTRTKVCCG--EPLHEEEGDEFVERI-----VSLEELVKKYDAVL 123
Query: 113 LAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTA----VILGQG 168
+A G R LGIPGEDL GV+SA E+++ G P K V++G G
Sbjct: 124 IATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLG--YLPWEKVPPVEGKKVVVVGAG 181
Query: 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI- 227
A+D A E L G+ KVYL RR +A E+ +
Sbjct: 182 LTAVDAA-------LE-----------AVLLGA--EKVYLAYRRTINEAPAGKYEIERLI 221
Query: 228 -LGIK 231
G++
Sbjct: 222 ARGVE 226
|
Length = 352 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 2e-15
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
+V VVGSGPAG A++ +A H+ V + +R GL+R G+ PD K VI++
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIGGLLRYGI-PDFKLEKEVIDRRI 200
Query: 80 RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF 139
+++ E F NV +G ++ EL Y V L GA R LGIPG DL GVH A +F
Sbjct: 201 ELMEAEGIEFRTNVEVGKDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDF 260
Query: 140 VWWYNGHPDGKNLSPDLKSTDTA-----VILGQGNVALDVARILLR 180
+ G P + +A V++G G+ +D +R
Sbjct: 261 LIQNTRRVLGDETEPFI----SAKGKHVVVIGGGDTGMDCVGTAIR 302
|
Length = 471 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 7e-15
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 21 RVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPDH--PETKIVINQ 77
+V ++G+GPAG A L K H V I D G++R G+ P PE+ VI+
Sbjct: 195 KVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAGGMMRYGI-PRFRLPES--VIDA 248
Query: 78 FSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
++ F N G ++L EL++ + V+LA GA+ +GIPGE+L GV S
Sbjct: 249 DIAPLRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGI 308
Query: 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
+F+ G L P K V++G GN A+D AR LR
Sbjct: 309 DFLRNVA---LGTALHPGKK----VVVIGGGNTAIDAARTALR 344
|
Length = 652 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 38/174 (21%)
Query: 21 RVCVVGSGPAGFYTAEK-TLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
RV V+G GPAG A H V I + P G++R G+ P + +
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGGMMRYGI-PAY--------RLP 186
Query: 80 R-VVQHE-----------RCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPG 127
R V+ E R V +G ++L +L + V +A GA+ + L IPG
Sbjct: 187 REVLDAEIQRILDLGVEVRL----GVRVGEDITLEQLEGEFDAVFVAIGAQLGKRLPIPG 242
Query: 128 EDLIGVHSAREFVWWYN-GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
ED GV A +F+ G P V++G GN A+D AR R
Sbjct: 243 EDAAGVLDAVDFLRAVGEGEPP--------FLGKRVVVIGGGNTAMDAARTARR 288
|
Length = 564 |
| >gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 3e-13
Identities = 89/365 (24%), Positives = 134/365 (36%), Gaps = 93/365 (25%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
RV V+G+GPAG A+ +A QV + DR P GL+ G+ P K V+++
Sbjct: 143 RVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRRE 199
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ F N +G +SL +L + Y V L G G+PGED GV A F+
Sbjct: 200 IFTAMGIEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFL 259
Query: 141 WWYNGHPDGKNLSPDLKSTDTA----VILGQGNVALDVARILLRPTEELATTDIASYAWT 196
G SP+ D V+LG G+ A+D R +R
Sbjct: 260 IANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIR---------------- 303
Query: 197 ALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256
V RR DE M SR
Sbjct: 304 ----LGAASVTCAYRR-----------------------------------DEANMPGSR 324
Query: 257 IQRRVYELLSKAAASASSQPMLGQRE--LHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314
+ A+A RE + F+F +P +E +E G V+GV +TAL
Sbjct: 325 ----------REVANA--------REEGVEFLFNVQPVY-IECDE-DGRVTGVGLVRTAL 364
Query: 315 KGGGP-GKQYAV---GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370
G++ V G+ EF L +V+ + G++ + +P+ GI + GR++
Sbjct: 365 GEPDADGRRRPVPVAGS-EFV-LPADVVIMAFGFQP---HAMPWLAGHGITLDSWGRIIT 419
Query: 371 NISGD 375
Sbjct: 420 GDVSY 424
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 8e-13
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH--PETKIV 74
+V V+GSGPAG T L A V I + L P G++ G+ P+ P+ +V
Sbjct: 138 KKGKKVAVIGSGPAGL-TCAGDL-AKMGYDVTIFEALHEPGGVLVYGI-PEFRLPKETVV 194
Query: 75 INQFSRVVQHERCSFFGNVTLGSSVSLSELRQ--LYHVVVLAYGAESDRALGIPGEDLIG 132
+ + + NV +G +V++ EL + + V + GA + +GIPGE+L G
Sbjct: 195 KKEIENIKKLG-VKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNG 253
Query: 133 VHSAREFVWWYNGHPDGKNLSPD----LKSTDTAVILGQGNVALDVARILLR 180
V SA EF+ N K P+ +K ++G GNVA+D AR LR
Sbjct: 254 VFSANEFLTRVN---LMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALR 302
|
Length = 464 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V +VGSGPAG A A +V + + L P G++R G+ P ++ +
Sbjct: 285 KVAIVGSGPAGLSAA--YFLATMGYEVTVYESLSKPGGVMRYGI----PSYRLPDEALDK 338
Query: 81 ---VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA- 136
++ N +G + L ELR+ + V L+ G R+ IPG D V A
Sbjct: 339 DIAFIEALGVKIHLNTRVGKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL 398
Query: 137 ---REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
RE + G +G P K + V++G GNVA+D+AR + R
Sbjct: 399 PLLREIRDYLRG--EG----PKPKIPRSLVVIGGGNVAMDIARSMAR 439
|
Length = 604 |
| >gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 87/370 (23%), Positives = 142/370 (38%), Gaps = 96/370 (25%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V + GSGPAG A +K V + + L G+++ G+ I+ + R
Sbjct: 432 KVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQR 489
Query: 81 VVQHERCSFFGNVTLGSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE 138
+V N +G + ++ +L + + V L GA + LGIPGE V+SA E
Sbjct: 490 LVD-IGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANE 548
Query: 139 FVWWYNGHPDGKNLSPDLKST----DTAVILGQGNVALDVARILLRPTEELATTDIASYA 194
F+ N G + P L + + V++G GN A+D R+ R
Sbjct: 549 FLTRVNLM--GGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKR-------------- 592
Query: 195 WTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254
L ++R VY RR +A +E+R H +E+
Sbjct: 593 ---LGAPTVRCVY---RRSEAEAPARIEEIR----------HAKEEG------------- 623
Query: 255 SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314
+ F F P E G V G+ E+ L
Sbjct: 624 ----------------------------IDFFFLHSPVEIYVDAE--GSVRGMKVEEMEL 653
Query: 315 KGGGP---GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371
G P G++ + TGEF+DL+C V+ ++G K+ P+ + G+ N G N
Sbjct: 654 --GEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT---QSTPGLALNKWG----N 704
Query: 372 ISGDSSQVEN 381
I+ D ++E+
Sbjct: 705 IAADDGKLES 714
|
Length = 1006 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 77/349 (22%), Positives = 132/349 (37%), Gaps = 104/349 (29%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
N +V V+GSGPAG A K + V + + L G+++ G+ PE ++
Sbjct: 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYD--VTVFEALHEIGGVLKYGI----PEFRLP-- 480
Query: 77 QFSRVVQHE-------RCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGE 128
++V E F +V +G ++++ EL + + + +A GA + IPGE
Sbjct: 481 --KKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEEGFKGIFIASGAGLPNFMNIPGE 538
Query: 129 DLIGVHSAREFVWWYNGHPDGKNLSPD----LKSTDTAVILGQGNVALDVARILLRPTEE 184
+ GV S+ E++ N SPD +K ++G GN A+D AR R E
Sbjct: 539 NSNGVMSSNEYLTRVNLM---DAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAE 595
Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
+V +V RR E+++
Sbjct: 596 --------------------RVTIVYRRS-------------------------EEEM-- 608
Query: 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHV 304
P EE+K+++ + + F+ P +L ++E G V
Sbjct: 609 -PARLEEVKHAK-----------------------EEGIEFLTLHNPIEYL-ADE-KGWV 642
Query: 305 SGVHFEKTALKGGGP---GKQYAVG-TGEFEDLDCGMVLKSIGYKSVPV 349
V +K L G P G++ V G +D +V+ S+G P+
Sbjct: 643 KQVVLQKMEL--GEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL 689
|
Length = 752 |
| >gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
+V V+G+GPAG A+ + A QVD+ DR P G++ G+ P + K V++Q
Sbjct: 312 KVAVIGAGPAGLGCAD--ILARAGVQVDVFDRHPEIGGMLTFGIPPFKLD-KTVLSQRRE 368
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ F N +G ++ S+L Y V + G +P ED GV A F+
Sbjct: 369 IFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFL 428
Query: 141 WWYNGHPDGKNLSPDLKSTDT----AVILGQGNVALDVARILLR 180
+ G S + TD V+LG G+ +D R +R
Sbjct: 429 TAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIR 472
|
Length = 639 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 8e-11
Identities = 92/404 (22%), Positives = 147/404 (36%), Gaps = 131/404 (32%)
Query: 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
A + +V V+G+GPAG A +A V + +R G+V++
Sbjct: 534 AGIGSRKKVAVIGAGPAGLAAAYFLARAGHP--VTVFEREENAGGVVKN----------- 580
Query: 74 VINQF---SRVVQH--ERCSFFG-NVTLGSSVSLS---ELRQLYHVVVLAYGAESDRALG 124
+I QF + ++QH E G G S L+ + Y VV+A GA+ + L
Sbjct: 581 IIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQLKNEGYDYVVVAIGADKNGGLK 640
Query: 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEE 184
+ G + V A F+ Y L + V++G GN A+D AR
Sbjct: 641 LEGGNQ-NVIKALPFLEEYKNKGTALKLGKHV------VVVGGGNTAMDAAR-------- 685
Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
AL + KV +V RR T +E+
Sbjct: 686 -----------AALRVPGVEKVTVVYRR-------TKQEM-------------------- 707
Query: 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHV 304
P EE E L + F P+SF + G +
Sbjct: 708 -PAWREE---------YEEALEDG--------------VEFKELLNPESF----DADGTL 739
Query: 305 SGVHFEKTALKGGGP---GKQYAVGTGEFEDLDCGMVLKSIG-------YKSVPVNGLPF 354
+ L G P G++ V TGE L+ V+ +IG K+ NG+P
Sbjct: 740 T---CRVMKL--GEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKA---NGIPL 791
Query: 355 DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398
D +G + + +G++S + N +Y+ G ++RGP+ I+A
Sbjct: 792 DK--------KGWPVVDANGETS-LTN-VYMIGDVQRGPSTIVA 825
|
Length = 1019 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 7e-09
Identities = 85/398 (21%), Positives = 136/398 (34%), Gaps = 119/398 (29%)
Query: 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI 73
S+ +V V+G+GPAG A V + ++ P G+V K
Sbjct: 532 QGKSSAHKVAVIGAGPAGLSAG--YFLARAGHPVTVFEKKEKPGGVV-----------KN 578
Query: 74 VINQF---SRVVQH--ERCSFFG-NVTLGSS--VSLSEL-RQLYHVVVLAYGAESDRALG 124
+I +F + +Q E F G G S ++++EL Q Y V+LA GA L
Sbjct: 579 IIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKHGPLR 638
Query: 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEE 184
+ G V + EF+ + P V++G GN A+D AR
Sbjct: 639 LEG-GGERVLKSLEFLRAFKEGP------TINPLGKHVVVVGGGNTAMDAAR-------- 683
Query: 185 LATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244
AL + KV +V RR + +EL E L + K
Sbjct: 684 -----------AALRVPGVEKVTVVYRRTKRYMPASREELEEAL---------EDGVDFK 723
Query: 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHV 304
E ++ + V +L +PD+
Sbjct: 724 ELLSPESFEDGTLTCEVMKL------------------------GEPDA----------- 748
Query: 305 SGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS----VPVNGLPFDNHKGI 360
G++ VGTGE DL V+ ++G + + NG+P D +
Sbjct: 749 --------------SGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEY--- 791
Query: 361 VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398
G + N + + + N ++V G RGP I+
Sbjct: 792 -----GWPVVNQATGETNITN-VFVIGDANRGPATIVE 823
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRV 81
+ VVGSGP+G A L A + V + + G++R G+ PE ++ V
Sbjct: 309 IAVVGSGPSGLINA--YLLAVEGFPVTVFEAFHDLGGVLRYGI----PEFRLPNQLIDDV 362
Query: 82 VQHERC---SFFGNVTLGSSVSLSELRQL-YHVVVLAYGAESDRALGIPGEDLIGVHSAR 137
V+ + F N +G + +L +L+ + + + GA + +PGE L+GV SA
Sbjct: 363 VEKIKLLGGRFVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSAN 422
Query: 138 EFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
EF+ N D + P++K + VI G GN A+D AR R
Sbjct: 423 EFLTRVNLMRGLDDDYETPLPEVKGKEVFVI-GGGNTAMDAARTAKR 468
|
Length = 944 |
| >gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
RV ++G+GPAG A+ + A V + DR P GL+ G+ P K ++ +
Sbjct: 329 RVAIIGAGPAGLACAD--VLARNGVAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRRE 385
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ F N +G +SL L + Y V + G G+P ED GV+ A F+
Sbjct: 386 IFSAMGIEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFL 445
Query: 141 WWYNGHPDGKNLSPDLKSTDTA----VILGQGNVALDVARILLR 180
G P+ +TA V+LG G+ A+D R LR
Sbjct: 446 IANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALR 489
|
Length = 654 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 43/183 (23%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR----------LPTPFGL----------V 60
V ++G GPAG A L A +V +I+R LP L
Sbjct: 1 DVVIIGGGPAG-LAAAIRL-ARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIG 58
Query: 61 RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESD 120
+ + E + + + VV G T+ + Y +++A GA
Sbjct: 59 LALPEEVYKEFGVEVLLGTEVVD----IDRGEKTVVLKDVETGREITYDKLIIATGA-RP 113
Query: 121 RALGIPGEDLI---GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
R GIPG ++ GV + E + K + V++G G + L++A
Sbjct: 114 RIPGIPGVEVATLRGVIDSDEIL---ELLELPKRV----------VVVGGGYIGLELAAA 160
Query: 178 LLR 180
L +
Sbjct: 161 LAK 163
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344
F + F N G V+GV +T L G G L +VL ++G+
Sbjct: 346 REFNVQTKEFEGEN---GKVTGVKVVRTELGEGDFEPV----EGSEFVLPADLVLLAMGF 398
Query: 345 KSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP 393
P GL G+ + RGRV + + ++ G ++RG
Sbjct: 399 TG-PEAGL-LAQF-GVELDERGRVAAPDNAYQTSNP-KVFAAGDMRRGQ 443
|
Length = 471 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 415 | |||
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 100.0 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 100.0 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 100.0 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 100.0 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 100.0 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 100.0 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 100.0 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 100.0 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 100.0 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 99.98 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.98 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.98 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.97 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.97 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.97 | |
| PLN02507 | 499 | glutathione reductase | 99.97 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.97 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.97 | |
| PLN02546 | 558 | glutathione reductase | 99.97 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 99.97 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.97 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.97 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.97 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.97 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.97 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.97 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.97 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.97 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.97 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.97 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.97 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.97 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.97 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.97 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.96 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.96 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.96 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.96 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.96 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.95 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.94 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 99.94 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.93 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 99.93 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.93 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.93 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.93 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.92 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.91 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.91 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.91 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.81 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.8 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.77 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.77 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.74 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.66 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.58 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.58 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.58 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.55 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.43 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.29 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.27 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.07 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.88 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.83 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.77 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.69 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.57 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.55 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.5 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.43 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.42 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.42 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.37 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.34 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.34 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.34 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.34 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.33 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.29 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.28 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.27 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.22 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.21 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.19 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.18 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.18 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.18 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.16 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.15 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.1 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.08 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.08 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.07 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.05 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.05 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.02 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.02 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.02 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.01 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 97.98 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 97.98 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 97.97 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 97.97 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 97.95 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 97.94 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 97.91 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 97.9 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 97.9 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.89 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.88 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 97.87 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.86 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.86 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 97.85 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 97.85 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.85 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.85 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.84 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 97.83 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.83 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.82 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 97.82 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.82 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.82 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.81 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 97.81 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 97.8 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 97.8 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.8 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.8 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 97.8 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 97.77 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.77 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 97.77 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.76 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.75 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.75 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.74 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.74 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.73 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.72 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.72 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.72 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.72 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.72 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.7 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.69 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.68 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.68 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.67 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.67 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.67 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.67 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.66 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.65 | |
| PLN02507 | 499 | glutathione reductase | 97.65 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.64 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 97.64 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.63 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.63 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.63 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.63 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.62 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 97.62 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.61 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.6 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.59 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.59 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.58 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.58 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 97.58 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.57 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.57 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.57 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.56 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.54 | |
| PLN02568 | 539 | polyamine oxidase | 97.54 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.53 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.53 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.53 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.53 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.51 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.51 | |
| PLN02676 | 487 | polyamine oxidase | 97.51 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.5 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.5 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.49 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.49 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.49 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 97.49 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.48 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.47 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.46 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.45 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.44 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.44 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.43 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.43 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.43 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 97.43 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 97.42 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.42 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.42 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 97.41 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.41 | |
| PLN02546 | 558 | glutathione reductase | 97.41 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.4 | |
| PLN02612 | 567 | phytoene desaturase | 97.4 | |
| PLN02985 | 514 | squalene monooxygenase | 97.39 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.39 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.39 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.37 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 97.36 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.36 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 97.36 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.36 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.36 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.35 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 97.35 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.33 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.33 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.33 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 97.33 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.32 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.32 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 97.32 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.3 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.29 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.29 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 97.28 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 97.28 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.26 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 97.26 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 97.25 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.24 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.23 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.22 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.18 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.16 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.16 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.13 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.13 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 97.12 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 97.12 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.11 | |
| PLN03000 | 881 | amine oxidase | 97.11 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 97.1 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.1 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.09 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 97.09 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.09 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 97.07 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.07 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 97.06 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 97.06 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.06 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.05 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 97.05 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.05 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.0 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 97.0 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.0 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 96.99 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 96.99 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 96.98 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 96.98 | |
| PLN02976 | 1713 | amine oxidase | 96.98 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 96.98 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 96.96 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.96 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.95 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 96.93 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 96.92 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.92 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 96.91 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.91 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 96.9 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 96.9 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.9 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 96.9 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 96.9 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 96.89 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.88 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.87 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.87 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 96.84 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 96.84 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 96.83 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 96.82 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 96.81 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.81 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 96.8 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 96.8 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 96.75 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 96.75 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 96.74 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 96.72 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.72 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 96.71 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 96.7 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 96.7 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 96.68 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 96.65 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.62 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.62 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 96.6 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 96.58 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 96.57 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 96.55 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 96.54 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.52 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 96.49 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 96.48 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 96.43 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 96.41 | |
| PLN02815 | 594 | L-aspartate oxidase | 96.37 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 96.36 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.35 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 96.32 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 96.32 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 96.31 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 96.31 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.27 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 96.26 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 96.25 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 96.24 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.2 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.19 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 96.18 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.17 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 96.15 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 96.13 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 96.13 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.12 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.12 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 96.12 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 96.1 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 96.08 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 96.08 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 96.07 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 96.04 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 96.02 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 95.97 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 95.97 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 95.96 | |
| PLN02463 | 447 | lycopene beta cyclase | 95.95 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 95.94 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 95.89 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 95.84 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 95.84 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 95.82 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 95.8 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 95.78 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 95.78 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 95.78 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 95.76 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 95.74 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 95.72 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 95.63 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.51 | |
| PRK05868 | 372 | hypothetical protein; Validated | 95.51 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 95.43 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 95.42 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.41 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 95.39 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 95.37 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 95.37 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 95.37 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 95.37 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 95.36 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 95.34 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 95.33 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 95.3 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 95.29 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 95.27 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 95.27 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 95.25 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 95.25 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 95.24 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.24 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 95.22 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 95.22 | |
| PLN02785 | 587 | Protein HOTHEAD | 95.21 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.19 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 95.16 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.13 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 95.06 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 95.05 | |
| PLN02985 | 514 | squalene monooxygenase | 95.04 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 94.99 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 94.98 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 94.94 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 94.94 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 94.93 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 94.91 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.9 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 94.87 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 94.85 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 94.84 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 94.83 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.81 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 94.69 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.69 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 94.68 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 94.62 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 94.61 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.57 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.56 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 94.54 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.54 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 94.46 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 94.44 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 94.34 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 94.32 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 94.24 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 94.23 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.2 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 94.2 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 94.19 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 94.18 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.16 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 94.15 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.08 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.03 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 93.95 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 93.94 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 93.93 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.91 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 93.9 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 93.84 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 93.78 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 93.66 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.58 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 93.54 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 93.52 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 93.47 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.38 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 93.35 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 93.24 | |
| PRK07121 | 492 | hypothetical protein; Validated | 93.23 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.16 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 93.13 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 93.11 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 93.1 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 93.04 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 92.84 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 92.83 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 92.75 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.73 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 92.65 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 92.6 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 92.6 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 92.55 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 92.53 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 92.48 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.47 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.44 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 92.33 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 92.32 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 92.19 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 92.15 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 92.06 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 92.04 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 92.01 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 91.81 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 91.8 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 91.79 |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=405.32 Aligned_cols=408 Identities=74% Similarity=1.183 Sum_probs=339.1
Q ss_pred hhhhhhcccc-----cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHH
Q 014990 4 ARAWLSRSFT-----ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQF 78 (415)
Q Consensus 4 ~~~~~~~~~~-----~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~ 78 (415)
++.|+++... .+....++|+|||+||||++||..|++..++++|+|||+.+.+||+++|++.|.+...+.+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~ 85 (491)
T PLN02852 6 ARTWLSRALSFSNSSSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQF 85 (491)
T ss_pred hhhccccccccccCCCCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHH
Confidence 4566666532 23456789999999999999999999732239999999999999999999989998889888888
Q ss_pred HHHhhccCeEEEeceEeceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 79 SRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
.+.+...++.|..++.++.+++.++....||+||||||+..++.+++||.+.++++++.+|..|++++++.......+..
T Consensus 86 ~~~~~~~~v~~~~nv~vg~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~ 165 (491)
T PLN02852 86 SRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKS 165 (491)
T ss_pred HHHHHHCCeEEEcCEEECccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccC
Confidence 88888889999999999999998888778999999999966788899999999999999999988876554333323346
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|++|+|+|..|.+..++|..+||.+.+++.++..++++|+++.|+.+...+|+.+|++++.+.+++.+.+.
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~ 245 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIK 245 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeec
Confidence 89999999999999999999998899999999999999999999999999999999999999999999999999888888
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC-
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG- 317 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~- 317 (415)
..++...+.........+.++|..+++.+++...........++|.++|..+|++|+.+.+.++++.++++..+.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~ 325 (491)
T PLN02852 246 EADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAA 325 (491)
T ss_pred hhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCc
Confidence 7777655666666667888999999998875321100011347999999999999972110136899999988776543
Q ss_pred CCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccch
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGII 397 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~ 397 (415)
.+|....+++|+.++++||.||.++|+++.++..++|....++..+++|++.+++. ++|+.|||||+|||.+||.+++
T Consensus 326 ~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~--~~T~ipGvyAaGDi~~Gp~gvI 403 (491)
T PLN02852 326 GSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSAS--GADTEPGLYVVGWLKRGPTGII 403 (491)
T ss_pred ccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCC--CccCCCCEEEeeeEecCCCCee
Confidence 34555455678888999999999999996555566777667788888999999875 6799999999999999999999
Q ss_pred hhhhhhHHHHHhhccc
Q 014990 398 ATNLYCAEETVSSLSL 413 (415)
Q Consensus 398 ~~a~~~g~~~a~~i~~ 413 (415)
..++.+|+.+|.+|..
T Consensus 404 ~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 404 GTNLTCAEETVASIAE 419 (491)
T ss_pred eecHhhHHHHHHHHHH
Confidence 9999999999999875
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=354.47 Aligned_cols=381 Identities=54% Similarity=0.874 Sum_probs=333.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+||||+++|..|.++.++.+|+|+|+.+.++|+.+||++|++++.+.....+.+.+++.++.|..|+.++.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~ 98 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGR 98 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecc
Confidence 45599999999999999999999877799999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHH
Q 014990 98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~ 177 (415)
++++.+.+..||+||||.|+..++.++|||.+..+|.++.+|..|+++.|+.+++.+++. +.+|+|||.|++++++|..
T Consensus 99 dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls-~~~vvIvG~GNVAlDvARi 177 (468)
T KOG1800|consen 99 DVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLS-GRKVVIVGNGNVALDVARI 177 (468)
T ss_pred cccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccc-cceEEEEccCchhhhhhhh
Confidence 999999999999999999998899999999999999999999999999999988888885 9999999999999999999
Q ss_pred HhcCccccc-ccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchH
Q 014990 178 LLRPTEELA-TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (415)
Q Consensus 178 L~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 256 (415)
|..+...|. .+||..+++..+++...++|+++.|+.+...+|+.+||||++..++....+...++..-...+......+
T Consensus 178 Lls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~R 257 (468)
T KOG1800|consen 178 LLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHR 257 (468)
T ss_pred hhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccC
Confidence 998554454 8999999999999999999999999999999999999999999999998888877776666666666688
Q ss_pred HHHHHHHHHHHHHhccCC--CCC-CCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEE
Q 014990 257 IQRRVYELLSKAAASASS--QPM-LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333 (415)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i 333 (415)
+|+++.+++.+....+.. .++ ...+...+.|...|..|. . ..+.+.++.+..+.+. +.. .+++|+.+++
T Consensus 258 pRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~--~-~~~~v~~~~~~~t~l~----~~~-~~~tg~~e~~ 329 (468)
T KOG1800|consen 258 PRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAIL--P-GADGVSGVRFQVTILE----GTQ-AVPTGAFETL 329 (468)
T ss_pred chhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhc--c-CcccccceEEEeeeeh----hhc-ccccCceEee
Confidence 999999999988775321 222 234456677888888998 4 3344777877665443 122 3457888999
Q ss_pred ecCeeEEeeccCCccCC-CCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 334 DCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 334 ~~D~vi~atG~~p~~~~-~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
+|+++|-++||+..+++ ++||+...|+..+..|++.+.. ..|+||+.||+.+||.++++.+|.++-.+|..|.
T Consensus 330 p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~------~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~ 403 (468)
T KOG1800|consen 330 PCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSG------CSPGLYASGWVKHGPTGVIATTMQDAFEVADTIV 403 (468)
T ss_pred ccceeEeeeeecccccCCCCCcccccCcccCCCceEEeec------cCCceEEEeeeccCCcceeeehhhhHHHHHHHHH
Confidence 99999999999987766 7899999999999999998432 6799999999999999999999999999999886
Q ss_pred c
Q 014990 413 L 413 (415)
Q Consensus 413 ~ 413 (415)
.
T Consensus 404 q 404 (468)
T KOG1800|consen 404 Q 404 (468)
T ss_pred H
Confidence 4
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=341.94 Aligned_cols=379 Identities=26% Similarity=0.503 Sum_probs=301.2
Q ss_pred cccccCCCCCCeEEEECCCHHHHHHHHHHH-HcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeE
Q 014990 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (415)
Q Consensus 10 ~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~-~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (415)
+++..+.++.++|+|||+||||++||.+|+ +.+ ++|+|||+.+.+||+++|++.|++...+.+...+...+...+++
T Consensus 30 ~~~~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~ 107 (506)
T PTZ00188 30 KCFFTNEAKPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYR 107 (506)
T ss_pred cccCCCCCCCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeE
Confidence 455555567889999999999999999876 456 99999999999999999999999988888888888878778899
Q ss_pred EEeceEeceEEEecccccccCEEEEccCCCCCCCCCCC------------CCC----CCCeeechhhHHHhcCCCCCC--
Q 014990 89 FFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIP------------GED----LIGVHSAREFVWWYNGHPDGK-- 150 (415)
Q Consensus 89 ~~~~~~v~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~------------g~~----~~~v~~~~~~~~~~~~~~~~~-- 150 (415)
+..+..++.+++.++....||+||+|+|+... .+| |.+ ..+++++.+|..|++.+++..
T Consensus 108 f~gnv~VG~Dvt~eeL~~~YDAVIlAtGA~~l---~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~ 184 (506)
T PTZ00188 108 FFGNVHVGVDLKMEELRNHYNCVIFCCGASEV---SIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRC 184 (506)
T ss_pred EEeeeEecCccCHHHHHhcCCEEEEEcCCCCC---CCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccc
Confidence 99999999999888888899999999999532 334 444 569999999999999987542
Q ss_pred -CCC---CCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHH
Q 014990 151 -NLS---PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELRE 226 (415)
Q Consensus 151 -~~~---~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~ 226 (415)
... ......++++|||+|++++++|..|.+..++|+.|||.+.+++++++...++|+++.|+.+...+|+.+||+|
T Consensus 185 ~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrE 264 (506)
T PTZ00188 185 KAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRE 264 (506)
T ss_pred ccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHH
Confidence 111 0112567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEEcccccCCCCCcHHhhhchHHHHH----HHHHHHHHHhccCCCCC--CCceeEEEEeccccccccccCCC
Q 014990 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR----VYELLSKAAASASSQPM--LGQRELHFVFFRKPDSFLESNER 300 (415)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~--~~~~~v~~~~~~~~~~v~~~~~~ 300 (415)
+.+.+++.+.+...++.............+.++| ..+++.+++... ..+. ...+.+.++|..+|++++ . .
T Consensus 265 L~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~-~~~~~~~~~r~i~l~F~~sP~ei~--~-~ 340 (506)
T PTZ00188 265 LISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVE-KNKEFYKTYKIIEFIFYFEIRQIR--P-I 340 (506)
T ss_pred HhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhc-cCccCCCCceEEEEEccCCceEEE--C-C
Confidence 9999998888876665321011111122444444 666777765310 0111 145789999999999998 5 3
Q ss_pred CCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCccc
Q 014990 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVE 380 (415)
Q Consensus 301 ~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~ 380 (415)
+++++++++..+.+.. +.. ..+|+.++++||+|+-++||+..+++++||+ .. ..+.+|++.. ..
T Consensus 341 ~~~v~~v~~~~n~l~~---~~~--~~tg~~~~~~~~lV~rsiGY~g~p~~g~pFd-~~--~~n~~grv~~--------~~ 404 (506)
T PTZ00188 341 DGAMKNVELELNKNVP---MSF--SSFKENKVLVTPLVIFATGFKKSNFAENLYN-QS--VQMFKEDIGQ--------HK 404 (506)
T ss_pred CCcEeEEEEEEeeccc---Ccc--CCCCeeEEEEcCEEEEcccccCCCCCCCCcc-cc--CCCCCCcccC--------CC
Confidence 5789999998766543 221 3467888999999999999999888888886 32 3344455531 26
Q ss_pred CCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 381 NGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 381 p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
||+|++||+.+||.+++++.|.++..++..|..
T Consensus 405 ~g~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~~ 437 (506)
T PTZ00188 405 FAIFKAGWFDKGPKGNIASQILNSKNSTHLVLN 437 (506)
T ss_pred CCcEEeeecCcCCCceeccCcccHHHHHHHHHH
Confidence 999999999999999999999999999988764
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=350.41 Aligned_cols=317 Identities=22% Similarity=0.346 Sum_probs=249.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
.++.++|+|||||||||+||.+|++.| ++|+|||+.+.+||++.|++ |.+..++++.+...+.++..|++|+.++.+
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GG~l~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFHDLGGVLRYGI-PEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCCCCceEEccC-CCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 356899999999999999999999999 99999999999999999998 888889999998889999999999999999
Q ss_pred ceEEEeccccc-ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCC-CCC--CCCCCCCCeEEEEcCChhH
Q 014990 96 GSSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNL--SPDLKSTDTAVILGQGNVA 171 (415)
Q Consensus 96 ~~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~-~~~--~~~~~~~k~V~VVG~G~sg 171 (415)
+++++.+++.. .||+||||||++.|+.+++||.+.++++++.+|+...+..... ... ......+|+|+|||||++|
T Consensus 380 G~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA 459 (944)
T PRK12779 380 GKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTA 459 (944)
T ss_pred ccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHH
Confidence 99999888765 7999999999977999999999999999999998754321100 000 0011268999999999999
Q ss_pred HHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHh
Q 014990 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (415)
Q Consensus 172 ~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~ 251 (415)
+|+|..+.+ .|+ +|+++.|+.... +|....+
T Consensus 460 ~D~A~ta~R--------------------~Ga-~Vtlv~rr~~~~----------------------------mpa~~~e 490 (944)
T PRK12779 460 MDAARTAKR--------------------LGG-NVTIVYRRTKSE----------------------------MPARVEE 490 (944)
T ss_pred HHHHHHHHH--------------------cCC-EEEEEEecCccc----------------------------ccccHHH
Confidence 999999986 566 699999875321 2322211
Q ss_pred hhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCC-CCCeeeEEEeeeee-cCCCCCcceeccCCc
Q 014990 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER-SGHVSGVHFEKTAL-KGGGPGKQYAVGTGE 329 (415)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~-~~~v~~v~~~~~~~-~~~~~g~~~~~~~g~ 329 (415)
+. ... ++|+++++...++++. .++ .+.+.++++....+ ..+.+|....+.+|+
T Consensus 491 ~~---------~a~--------------eeGV~~~~~~~p~~i~--~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~ 545 (944)
T PRK12779 491 LH---------HAL--------------EEGINLAVLRAPREFI--GDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGE 545 (944)
T ss_pred HH---------HHH--------------HCCCEEEeCcceEEEE--ecCCCCEEEEEEEEEEEeccccCcCceeeecCCc
Confidence 11 111 5689999999999997 411 23577777665444 234456554455677
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHh
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVS 409 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~ 409 (415)
+.+++||.||+|+|+.|+.. + .....++..+++|.+.+|+.. ++|+.|||||+|||+++++.++ .|+.+|+.||.
T Consensus 546 e~~i~aD~VI~AiG~~p~~~--l-~~~~~gle~~~~G~I~vd~~~-~~Ts~pgVFAaGD~~~G~~~vv-~Ai~eGr~AA~ 620 (944)
T PRK12779 546 IERVPVDLVIMALGNTANPI--M-KDAEPGLKTNKWGTIEVEKGS-QRTSIKGVYSGGDAARGGSTAI-RAAGDGQAAAK 620 (944)
T ss_pred eEEEECCEEEEcCCcCCChh--h-hhcccCceECCCCCEEECCCC-CccCCCCEEEEEcCCCChHHHH-HHHHHHHHHHH
Confidence 77999999999999999752 1 223356778888999999755 8899999999999998877666 79999999999
Q ss_pred hcccc
Q 014990 410 SLSLI 414 (415)
Q Consensus 410 ~i~~~ 414 (415)
+|++.
T Consensus 621 ~I~~~ 625 (944)
T PRK12779 621 EIVGE 625 (944)
T ss_pred HHHHH
Confidence 99764
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=326.93 Aligned_cols=317 Identities=27% Similarity=0.393 Sum_probs=240.0
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHH-HHHHHHHHhhccCeEEEece
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI-VINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (415)
..++.++|+||||||||+++|.+|++.| ++|+|||+.+.+||.+.|++ |.+..+.+ +.....+.++..+++++.++
T Consensus 136 ~~~~~~~V~IIG~GpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~~gv~i~~~~ 212 (464)
T PRK12831 136 EEKKGKKVAVIGSGPAGLTCAGDLAKMG--YDVTIFEALHEPGGVLVYGI-PEFRLPKETVVKKEIENIKKLGVKIETNV 212 (464)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCCCeeeecC-CCccCCccHHHHHHHHHHHHcCCEEEcCC
Confidence 3457899999999999999999999999 99999999999999999887 65544444 66677777888899999999
Q ss_pred EeceEEEecccc--cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCC-CCCCCCCCCCeEEEEcCChh
Q 014990 94 TLGSSVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK-NLSPDLKSTDTAVILGQGNV 170 (415)
Q Consensus 94 ~v~~~v~~~~~~--~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~k~V~VVG~G~s 170 (415)
.++.+++.++.. ..||+||||||++.|+.+++||.+.++++++.+|+...+....+. ........+++|+|||+|++
T Consensus 213 ~v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~v 292 (464)
T PRK12831 213 VVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNV 292 (464)
T ss_pred EECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHH
Confidence 887766665542 259999999999668889999999999999998886543221111 00112346899999999999
Q ss_pred HHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHH
Q 014990 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250 (415)
Q Consensus 171 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 250 (415)
|+|+|..+.+ .|.+ |+++.|+.... +|....
T Consensus 293 a~d~A~~l~r--------------------~Ga~-Vtlv~r~~~~~----------------------------m~a~~~ 323 (464)
T PRK12831 293 AMDAARTALR--------------------LGAE-VHIVYRRSEEE----------------------------LPARVE 323 (464)
T ss_pred HHHHHHHHHH--------------------cCCE-EEEEeecCccc----------------------------CCCCHH
Confidence 9999999986 5664 99999875321 222111
Q ss_pred hhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceecc-CC
Q 014990 251 EMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TG 328 (415)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~-~g 328 (415)
++. .+. ++||++++...+.++. .++++.+.++++..+.+. .+.+|....+. +|
T Consensus 324 e~~----------~a~-------------~eGV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g 378 (464)
T PRK12831 324 EVH----------HAK-------------EEGVIFDLLTNPVEIL--GDENGWVKGMKCIKMELGEPDASGRRRPVEIEG 378 (464)
T ss_pred HHH----------HHH-------------HcCCEEEecccceEEE--ecCCCeEEEEEEEEEEecCcCCCCCccceecCC
Confidence 110 111 6689999999999987 423567888887655432 22344432322 45
Q ss_pred ceEEEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 329 ~~~~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
+..++++|+||+|+|+.|+. .+... .|+.++++|.+.+|+.+ ++|+.|||||+|||..++..++ .|+.+|+.|
T Consensus 379 ~~~~i~~D~Vi~AiG~~p~~----~~~~~~~gl~~~~~G~i~vd~~~-~~Ts~pgVfAaGD~~~g~~~v~-~Ai~~G~~A 452 (464)
T PRK12831 379 SEFVLEVDTVIMSLGTSPNP----LISSTTKGLKINKRGCIVADEET-GLTSKEGVFAGGDAVTGAATVI-LAMGAGKKA 452 (464)
T ss_pred ceEEEECCEEEECCCCCCCh----hhhcccCCceECCCCcEEECCCC-CccCCCCEEEeCCCCCCchHHH-HHHHHHHHH
Confidence 66689999999999999975 23233 57778888999999876 7899999999999998777655 799999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.+|++.
T Consensus 453 A~~I~~~ 459 (464)
T PRK12831 453 AKAIDEY 459 (464)
T ss_pred HHHHHHH
Confidence 9999864
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=322.26 Aligned_cols=316 Identities=24% Similarity=0.356 Sum_probs=238.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|+||||||||+++|..|++.| ++|+|||+.+.+||.+.+++ |.+..++++.....+.++..+++++.+..+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAG--HSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcEeeecC-CCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 346789999999999999999999999 99999999999999998887 655566677777777778889999999888
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCC--CCCCCCCCCCCeEEEEcCChhHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~k~V~VVG~G~sg~e 173 (415)
+.+++.++....||+||||||+..|+.|++||.+.++++++.+++......... .........+++|+|||+|++|+|
T Consensus 207 ~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 286 (449)
T TIGR01316 207 GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVD 286 (449)
T ss_pred CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHH
Confidence 777776655567999999999866888899999988999988877543321110 000111236899999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhh
Q 014990 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (415)
+|..+.+ .|. +|+++.|+...+ ++.....+
T Consensus 287 ~A~~l~~--------------------~G~-~Vtlv~~~~~~~----------------------------~~~~~~~~- 316 (449)
T TIGR01316 287 SARTALR--------------------LGA-EVHCLYRRTRED----------------------------MTARVEEI- 316 (449)
T ss_pred HHHHHHH--------------------cCC-EEEEEeecCccc----------------------------CCCCHHHH-
Confidence 9999986 565 599999885321 12111111
Q ss_pred chHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceecc-CCceE
Q 014990 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEFE 331 (415)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~-~g~~~ 331 (415)
+.+. ++||+++++..++++. .++++++.++++..+.+. .+.+|....++ +++..
T Consensus 317 ---------~~l~-------------~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~ 372 (449)
T TIGR01316 317 ---------AHAE-------------EEGVKFHFLCQPVEII--GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAEC 372 (449)
T ss_pred ---------HHHH-------------hCCCEEEeccCcEEEE--EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceE
Confidence 1111 6799999999999987 423567878877654332 12234322221 45566
Q ss_pred EEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhc
Q 014990 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i 411 (415)
++++|+||+|+|+.|+. .+....++.++++|.+.+|+. ++|+.|||||+|||..++..+. .|+.||+.||.+|
T Consensus 373 ~i~~D~Vi~AiG~~p~~----~~l~~~gl~~~~~G~i~vd~~--~~Ts~~~VfA~GD~~~g~~~v~-~Ai~~G~~AA~~I 445 (449)
T TIGR01316 373 KLEADAVIVAIGNGSNP----IMAETTRLKTSERGTIVVDED--QRTSIPGVFAGGDIILGAATVI-RAMGQGKRAAKSI 445 (449)
T ss_pred EEECCEEEECCCCCCCc----hhhhccCcccCCCCeEEeCCC--CccCCCCEEEecCCCCCcHHHH-HHHHHHHHHHHHH
Confidence 89999999999999975 244556778888899999986 8899999999999987776555 7999999999999
Q ss_pred cccC
Q 014990 412 SLIS 415 (415)
Q Consensus 412 ~~~~ 415 (415)
++.+
T Consensus 446 ~~~L 449 (449)
T TIGR01316 446 NEYL 449 (449)
T ss_pred HhhC
Confidence 8753
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=341.06 Aligned_cols=317 Identities=26% Similarity=0.387 Sum_probs=245.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++.++|+|||||||||+||.+|+++| ++|+|||+.+.+||.+.+++ |.+..++++.....+.+...|+++..++.++
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G--~~VtV~E~~~~~GG~l~~gi-p~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg 504 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGI-PSFRLPRDIIDREVQRLVDIGVKIETNKVIG 504 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCcceeeccC-CccCCCHHHHHHHHHHHHHCCCEEEeCCccC
Confidence 35789999999999999999999999 99999999999999999998 7777788888888888889999999998888
Q ss_pred eEEEecccc--cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCC-C-CCCCCCCCCCCCeEEEEcCChhHH
Q 014990 97 SSVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP-D-GKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 97 ~~v~~~~~~--~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~-~-~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
.+++.++.. ..||+||||||++.++.+++||.+.++++++.+|+...+... . ..........+|+|+|||+|++|+
T Consensus 505 ~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~ 584 (1006)
T PRK12775 505 KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAM 584 (1006)
T ss_pred CccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHH
Confidence 777766553 469999999999668999999999999999999987764211 0 000011233689999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
|+|..+.+ .|++.|+++.|+.... +|....++
T Consensus 585 D~A~~a~r--------------------lGa~~Vtiv~rr~~~e----------------------------m~a~~~e~ 616 (1006)
T PRK12775 585 DCLRVAKR--------------------LGAPTVRCVYRRSEAE----------------------------APARIEEI 616 (1006)
T ss_pred HHHHHHHH--------------------cCCCEEEEEeecCccc----------------------------CCCCHHHH
Confidence 99988875 6888899998875432 22211111
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceeccCCceE
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFE 331 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~~g~~~ 331 (415)
+.+ .+.||++++...+.++. .++++.+.++++..+.+. .+.+|....+++|+..
T Consensus 617 ----------~~a-------------~eeGI~~~~~~~p~~i~--~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~ 671 (1006)
T PRK12775 617 ----------RHA-------------KEEGIDFFFLHSPVEIY--VDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFK 671 (1006)
T ss_pred ----------HHH-------------HhCCCEEEecCCcEEEE--eCCCCeEEEEEEEEEEecccCCCCCccccCCCceE
Confidence 011 16789999999999986 424678888888765432 2334554444456667
Q ss_pred EEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc----CCCCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI----SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~----~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
+++||.||+|+|+.|+.. + +....++.++++|.+.+|+ .+ ++|++|||||+||+++++..++ .|+.+|+.|
T Consensus 672 ~i~~D~Vi~AiG~~p~~~--~-~~~~~gl~l~~~G~I~vd~~~v~~~-~~Ts~pgVFAaGDv~~G~~~vv-~Ai~~Gr~A 746 (1006)
T PRK12775 672 DLECDTVIYALGTKANPI--I-TQSTPGLALNKWGNIAADDGKLEST-QSTNLPGVFAGGDIVTGGATVI-LAMGAGRRA 746 (1006)
T ss_pred EEEcCEEEECCCcCCChh--h-hhccCCcccCCCCcEEeCCCccccC-cCCCCCCEEEecCcCCCccHHH-HHHHHHHHH
Confidence 899999999999999752 1 1122356777789998886 23 7899999999999998887666 799999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.+|++.
T Consensus 747 A~~I~~~ 753 (1006)
T PRK12775 747 ARSIATY 753 (1006)
T ss_pred HHHHHHH
Confidence 9998764
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=334.17 Aligned_cols=316 Identities=24% Similarity=0.368 Sum_probs=243.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|+||||||||++||.+|++.| ++|+|||+.+.+||.+.|++ |.+..++++.....+.+.+.+++++.++.+
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRG--YDVTVFEALHEIGGVLKYGI-PEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 346889999999999999999999999 99999999999999999998 777777777777777788889999999998
Q ss_pred ceEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCC-CCCCCCCCCeEEEEcCChhHHH
Q 014990 96 GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 96 ~~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~k~V~VVG~G~sg~e 173 (415)
+++++.++.. ..||+||||||++.++.+++||.+.++++++.+|+...+....+.. .......+++|+|||+|++|+|
T Consensus 505 ~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 584 (752)
T PRK12778 505 GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMD 584 (752)
T ss_pred CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHH
Confidence 8887777654 4699999999996688899999999999999988875532211110 0111336899999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhh
Q 014990 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (415)
+|..+.+ .+.++|+++.|+.... +|....++
T Consensus 585 ~A~~~~r--------------------~Ga~~Vtlv~r~~~~~----------------------------~~~~~~e~- 615 (752)
T PRK12778 585 SARTAKR--------------------LGAERVTIVYRRSEEE----------------------------MPARLEEV- 615 (752)
T ss_pred HHHHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHHH-
Confidence 9999986 6777799999875321 22211111
Q ss_pred chHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceec-cCCceE
Q 014990 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAV-GTGEFE 331 (415)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~-~~g~~~ 331 (415)
+.+. ++||++++...+.++. .++++.+.++++..+.+. .+.+|....+ .+|++.
T Consensus 616 ---------~~~~-------------~~GV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~ 671 (752)
T PRK12778 616 ---------KHAK-------------EEGIEFLTLHNPIEYL--ADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTF 671 (752)
T ss_pred ---------HHHH-------------HcCCEEEecCcceEEE--ECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeE
Confidence 1111 6689999999999986 423567888887655442 2233442222 246667
Q ss_pred EEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhh
Q 014990 332 DLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSS 410 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~ 410 (415)
+++||+||+|+|++|+. .+... .++.++++|++.+|++ ++|+.|||||+|||++++..++ .|+.+|+.||.+
T Consensus 672 ~i~~D~Vi~A~G~~p~~----~l~~~~~gl~~~~~G~i~vd~~--~~Ts~~gVfA~GD~~~g~~~vv-~Av~~G~~AA~~ 744 (752)
T PRK12778 672 TVDVDLVIVSVGVSPNP----LVPSSIPGLELNRKGTIVVDEE--MQSSIPGIYAGGDIVRGGATVI-LAMGDGKRAAAA 744 (752)
T ss_pred EEECCEEEECcCCCCCc----cccccccCceECCCCCEEeCCC--CCCCCCCEEEeCCccCCcHHHH-HHHHHHHHHHHH
Confidence 89999999999999975 22222 3677888899999987 6899999999999998776655 799999999999
Q ss_pred cccc
Q 014990 411 LSLI 414 (415)
Q Consensus 411 i~~~ 414 (415)
|++.
T Consensus 745 I~~~ 748 (752)
T PRK12778 745 IDEY 748 (752)
T ss_pred HHHH
Confidence 9864
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=308.29 Aligned_cols=313 Identities=27% Similarity=0.411 Sum_probs=235.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
....++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.+++ |.+..+.++.....+.++..+++++.++.+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g--~~V~lie~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGGLLRYGI-PEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCcEeeccC-CCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 456789999999999999999999999 99999999999999998887 666666777777788888889999999888
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+..++.++....||+||+|||+..++.+++||.+.++++++.+++........ ...+..+++|+|||+|.+|+|+|
T Consensus 214 ~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~----~~~~~~g~~VvViGgG~~g~e~A 289 (457)
T PRK11749 214 GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVA----DYDLPVGKRVVVIGGGNTAMDAA 289 (457)
T ss_pred CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccc----cccCCCCCeEEEECCCHHHHHHH
Confidence 66665555456899999999996678889999988899998888766542210 01123689999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ .+.++|+++.|+.... +|.....
T Consensus 290 ~~l~~--------------------~G~~~Vtlv~~~~~~~----------------------------~~~~~~~---- 317 (457)
T PRK11749 290 RTAKR--------------------LGAESVTIVYRRGREE----------------------------MPASEEE---- 317 (457)
T ss_pred HHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHH----
Confidence 99985 5777999999875321 2221111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceeccCCceEEEe
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLD 334 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~~g~~~~i~ 334 (415)
.+.+. +.||+++++..+.++. . +++.+.++++....+. .+..|......++++++++
T Consensus 318 ------~~~~~-------------~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~ 375 (457)
T PRK11749 318 ------VEHAK-------------EEGVEFEWLAAPVEIL--G-DEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLP 375 (457)
T ss_pred ------HHHHH-------------HCCCEEEecCCcEEEE--e-cCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEE
Confidence 01111 6789999999999987 4 3444556766544321 1222332211245667899
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
||.|||++|++|+.. + +....++.++++|++.+|+.+ ++|+.|||||+||++.++..+. .|+.||+.||.+|++.
T Consensus 376 ~D~vi~a~G~~p~~~--l-~~~~~gl~~~~~g~i~vd~~~-~~Ts~~~VfA~GD~~~~~~~~~-~A~~~G~~aA~~I~~~ 450 (457)
T PRK11749 376 ADLVIKAIGQTPNPL--I-LSTTPGLELNRWGTIIADDET-GRTSLPGVFAGGDIVTGAATVV-WAVGDGKDAAEAIHEY 450 (457)
T ss_pred CCEEEECccCCCCch--h-hccccCccCCCCCCEEeCCCC-CccCCCCEEEeCCcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999751 1 123456777888999999844 8899999999999986655444 7999999999999764
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=320.25 Aligned_cols=318 Identities=23% Similarity=0.343 Sum_probs=240.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
.+.++|+||||||||+++|..|++.| ++|+|||+.+.+||++.+++ |.+..++++.....+.++..++++..++.++
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeeecC-CCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 46789999999999999999999999 99999999999999999998 7777777887777778888899999999887
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCC-CCCCCC---CCCCCCCCeEEEEcCChhHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGH-PDGKNL---SPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~-~~~~~~---~~~~~~~k~V~VVG~G~sg~ 172 (415)
.+++.......||+|++|||+..++.+++||.+.++++++.+|+...... ...... ......+++|+|||+|++|+
T Consensus 402 ~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 481 (654)
T PRK12769 402 KDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAM 481 (654)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 76666555568999999999976778899999999999887775322110 000000 00113689999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
|+|..+.+ .++++|+++.|+.... +|....++
T Consensus 482 d~A~~a~r--------------------~ga~~Vt~i~~~~~~~----------------------------~~~~~~e~ 513 (654)
T PRK12769 482 DCVRTALR--------------------HGASNVTCAYRRDEAN----------------------------MPGSKKEV 513 (654)
T ss_pred HHHHHHHH--------------------cCCCeEEEeEecCCCC----------------------------CCCCHHHH
Confidence 99988775 5778899999875432 22221111
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceecc-CCce
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~-~g~~ 330 (415)
+.+. ++||+++++..++++. .++++.+.++++....+. .+.+|...... +|+.
T Consensus 514 ----------~~~~-------------~~Gv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 568 (654)
T PRK12769 514 ----------KNAR-------------EEGANFEFNVQPVALE--LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE 568 (654)
T ss_pred ----------HHHH-------------HcCCeEEeccCcEEEE--ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCce
Confidence 1111 6789999999999986 323577888887654431 23345432222 5666
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC--CCCcccCCeeeeeccccCCccchhhhhhhHHHHH
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG--DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~--~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a 408 (415)
.++++|+||+|+|+.|+.. .+....++.++++|.+.+|... .++|+.|||||+||+.++++.++ .|+.+|+.||
T Consensus 569 ~~i~~D~Vi~AiG~~p~~~---~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv-~Ai~~Gr~AA 644 (654)
T PRK12769 569 FVMPADAVIMAFGFNPHGM---PWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVV-TAMAEGRHAA 644 (654)
T ss_pred EEEECCEEEECccCCCCcc---ccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHH-HHHHHHHHHH
Confidence 7899999999999999752 2445567888889999988521 17899999999999998777655 7999999999
Q ss_pred hhcccc
Q 014990 409 SSLSLI 414 (415)
Q Consensus 409 ~~i~~~ 414 (415)
.+|++.
T Consensus 645 ~~I~~~ 650 (654)
T PRK12769 645 QGIIDW 650 (654)
T ss_pred HHHHHH
Confidence 999865
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=316.43 Aligned_cols=307 Identities=25% Similarity=0.366 Sum_probs=232.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
+..++|+||||||||+++|..|++.| ++|+|||+.+.+||.+.+++ |.+..++++.+...+.+...+++++.++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~ 267 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAPLRAMGAEFRFNTVFG 267 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeecC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 45789999999999999999999999 99999999999999999987 6666777777777777888899999998876
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~ 176 (415)
.+++.+.....||+||+|||+..++.+++||.+.+++++..+++....... ....+++|+|||+|++|+|+|.
T Consensus 268 ~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~-------~~~~gk~VvVIGgG~~a~e~A~ 340 (652)
T PRK12814 268 RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT-------ALHPGKKVVVIGGGNTAIDAAR 340 (652)
T ss_pred CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCC-------cccCCCeEEEECCCHHHHHHHH
Confidence 666555555579999999999656778999998888988877776543211 1336899999999999999999
Q ss_pred HHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchH
Q 014990 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (415)
Q Consensus 177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 256 (415)
.+.+ .+.++|+++.|+.... +|....++.
T Consensus 341 ~l~~--------------------~Ga~~Vtlv~r~~~~~----------------------------mpa~~~ei~--- 369 (652)
T PRK12814 341 TALR--------------------LGAESVTILYRRTREE----------------------------MPANRAEIE--- 369 (652)
T ss_pred HHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHHHH---
Confidence 9885 6778999999876322 222211111
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceecc-CCceEEEe
Q 014990 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVG-TGEFEDLD 334 (415)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~~-~g~~~~i~ 334 (415)
+.+ ++||+++++..+.++. . +++.+ .++...... ..+.+|....+. +|+..+++
T Consensus 370 ------~a~--------------~eGV~i~~~~~~~~i~--~-~~~~~-~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~ 425 (652)
T PRK12814 370 ------EAL--------------AEGVSLRELAAPVSIE--R-SEGGL-ELTAIKMQQGEPDESGRRRPVPVEGSEFTLQ 425 (652)
T ss_pred ------HHH--------------HcCCcEEeccCcEEEE--e-cCCeE-EEEEEEEEecccCCCCCCcceecCCceEEEE
Confidence 111 5689999999999987 4 34433 232211111 112234322222 45666899
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
+|.||+++|+.|+. .+....++.++.+|++.+|+.+ ++|+.|||||+||+..++..+. .|+.||+.||.+|+++
T Consensus 426 ~D~VI~AiG~~p~~----~ll~~~gl~~~~~G~I~vd~~~-~~Ts~pgVfA~GDv~~g~~~v~-~Ai~~G~~AA~~I~~~ 499 (652)
T PRK12814 426 ADTVISAIGQQVDP----PIAEAAGIGTSRNGTVKVDPET-LQTSVAGVFAGGDCVTGADIAI-NAVEQGKRAAHAIDLF 499 (652)
T ss_pred CCEEEECCCCcCCc----ccccccCccccCCCcEeeCCCC-CcCCCCCEEEcCCcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999975 3445567788888999999866 8999999999999987766544 7999999999999764
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=313.62 Aligned_cols=317 Identities=22% Similarity=0.345 Sum_probs=241.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++.++|+|||+||||+++|..|++.| ++|+|||+.+.+||++.|++ |.+..++++.+...+.++..+++++.++.++
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFGI-PPFKLDKTVLSQRREIFTAMGIDFHLNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeeccC-CcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence 46899999999999999999999999 99999999999999999998 6566677777777788888999999999887
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcC----CCCCCCCCCCCCCCCeEEEEcCChhHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG----HPDGKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
.+++.++....||+|++|||+..++.+++||.+.++++++.+|+..... .............+|+|+|||+|.+++
T Consensus 385 ~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~ 464 (639)
T PRK12809 385 RDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTM 464 (639)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 7766666566899999999997677789999999999998877654311 111001111123689999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
++|..+.+ .|+++|+++.|+.... +|....++
T Consensus 465 d~a~~~~~--------------------~Ga~~Vt~v~rr~~~~----------------------------~~~~~~e~ 496 (639)
T PRK12809 465 DCLRTSIR--------------------LNAASVTCAYRRDEVS----------------------------MPGSRKEV 496 (639)
T ss_pred HHHHHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHHH
Confidence 99988764 5888999999875432 22222211
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceecc-CCce
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVG-TGEF 330 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~~-~g~~ 330 (415)
. .. .++||++++...++++. .++++.+.++++....+ ..+.+|...+.. .|++
T Consensus 497 ~---------~a--------------~~eGv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 551 (639)
T PRK12809 497 V---------NA--------------REEGVEFQFNVQPQYIA--CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSE 551 (639)
T ss_pred H---------HH--------------HHcCCeEEeccCCEEEE--ECCCCeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence 1 11 16789999999999996 42356788777654433 223345433322 5667
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccC---CCCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS---GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~---~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
.++++|+||+|+|+.|+.. .+....++.++++|.+.+|+. + ++|+.|+|||+||+.+++..++ .|+.+|+.|
T Consensus 552 ~~i~aD~Vi~AiG~~p~~~---~~~~~~gl~~~~~G~i~vd~~~~~~-~~Ts~~gVfA~GD~~~g~~~vv-~Ai~~Gr~A 626 (639)
T PRK12809 552 FELPADVLIMAFGFQAHAM---PWLQGSGIKLDKWGLIQTGDVGYLP-TQTHLKKVFAGGDAVHGADLVV-TAMAAGRQA 626 (639)
T ss_pred EEEECCEEEECcCCCCCcc---ccccccCcccCCCCCEEeCCCcccC-cccCCCCEEEcCCCCCCchHHH-HHHHHHHHH
Confidence 7999999999999999652 244556788888899988752 3 7899999999999998776555 799999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.+|++.
T Consensus 627 A~~i~~~ 633 (639)
T PRK12809 627 ARDMLTL 633 (639)
T ss_pred HHHHHHH
Confidence 9999864
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=318.15 Aligned_cols=302 Identities=25% Similarity=0.366 Sum_probs=228.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
.+.++|+||||||||++||..|++.| ++|+|||+.+.+||.+.+++ |.+..+.+.+....+.+...+++++.++.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~~~GG~lr~~I-P~~Rlp~evL~~die~l~~~GVe~~~gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREENAGGVVKNII-PQFRIPAELIQHDIEFVKAHGVKFEFGCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecccccCcceeeec-ccccccHHHHHHHHHHHHHcCCEEEeCcee-
Confidence 46889999999999999999999999 99999999999999998876 777777777777777778889999999877
Q ss_pred eEEEeccccc-ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 97 ~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+++.+.... .||+||||||++.++.++++|.+ .+++++.+++..++... .....+++|+|||+|++|+|+|
T Consensus 613 -di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~------~~~~~GKrVVVIGGGnVAmD~A 684 (1019)
T PRK09853 613 -DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKG------TALKLGKHVVVVGGGNTAMDAA 684 (1019)
T ss_pred -EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhc------ccccCCCEEEEECCChHHHHHH
Confidence 345555444 69999999999767778888875 57888888776553211 1133689999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ ..+.++|+++.|+.... +|....++.
T Consensus 685 r~a~R-------------------lgGakeVTLVyRr~~~~----------------------------MPA~~eEle-- 715 (1019)
T PRK09853 685 RAALR-------------------VPGVEKVTVVYRRTKQE----------------------------MPAWREEYE-- 715 (1019)
T ss_pred HHHHh-------------------cCCCceEEEEEccCccc----------------------------ccccHHHHH--
Confidence 88775 12557999999985321 222211111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEec
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC 335 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~ 335 (415)
+.+ ++||++++...+.++. . ++.+...... .. ..+..|....+.++++.+++|
T Consensus 716 -------~Al--------------eeGVe~~~~~~p~~I~--~--dG~l~~~~~~-lg-~~d~~Gr~~~v~tg~~~~I~a 768 (1019)
T PRK09853 716 -------EAL--------------EDGVEFKELLNPESFD--A--DGTLTCRVMK-LG-EPDESGRRRPVETGETVTLEA 768 (1019)
T ss_pred -------HHH--------------HcCCEEEeCCceEEEE--c--CCcEEEEEEE-ee-cccCCCceEEeeCCCeEEEEe
Confidence 111 4589999999998886 3 4544322111 00 112345444445677789999
Q ss_pred CeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 336 GMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 336 D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+||+|+|..|+. .+....|+.++++|++.+|+. ++|+.|||||+|||++++..+. .|+.||+.||.+|..
T Consensus 769 D~VIvAIG~~Pnt----elle~~GL~ld~~G~I~VDet--lqTs~pgVFAaGD~a~Gp~tvv-~Ai~qGr~AA~nI~~ 839 (1019)
T PRK09853 769 DTVITAIGEQVDT----ELLKANGIPLDKKGWPVVDAN--GETSLTNVYMIGDVQRGPSTIV-AAIADARRAADAILS 839 (1019)
T ss_pred CEEEECCCCcCCh----hHHHhcCccccCCCCEEeCCC--cccCCCCEEEEeccccCchHHH-HHHHHHHHHHHHHhh
Confidence 9999999999975 344556777888899999875 7899999999999998887666 799999999999975
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=300.68 Aligned_cols=317 Identities=25% Similarity=0.364 Sum_probs=235.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++.++|+|||+||||+++|..|++.| ++|+|+|+.+.+||++.+++ |.+..++++.....+.+...+++++.++.++
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRREIFTAMGIEFHLNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeecC-ccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence 36789999999999999999999999 99999999999999999987 6666677787777788888899999999887
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhc----CCCCCCCCCCCCCCCCeEEEEcCChhHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
.+++.++....||+||+|||+...+.+++||.+.++++++.+|+.... ..............+++|+|||+|++|+
T Consensus 216 ~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 295 (467)
T TIGR01318 216 RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAM 295 (467)
T ss_pred CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHH
Confidence 665555544579999999999656778999999999999877754321 1111001111112589999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
++|..+.+ .+.++|+++.|++... +|....++
T Consensus 296 d~A~~a~~--------------------~Ga~~Vtvv~r~~~~~----------------------------~~~~~~e~ 327 (467)
T TIGR01318 296 DCVRTAIR--------------------LGAASVTCAYRRDEAN----------------------------MPGSRREV 327 (467)
T ss_pred HHHHHHHH--------------------cCCCeEEEEEecCccc----------------------------CCCCHHHH
Confidence 99988775 5777899999876432 22211111
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceec-cCCce
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAV-GTGEF 330 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~-~~g~~ 330 (415)
+.+. ++||+++++..+.++. .++++.+.++++..... ..+.+|..... .+|+.
T Consensus 328 ----------~~~~-------------~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 382 (467)
T TIGR01318 328 ----------ANAR-------------EEGVEFLFNVQPVYIE--CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSE 382 (467)
T ss_pred ----------HHHH-------------hcCCEEEecCCcEEEE--ECCCCeEEEEEEEEEEecccCCCCCccceecCCce
Confidence 1111 6689999999999986 32356677777654322 12233432222 14666
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc---CCCCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI---SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~---~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
.+++||.||+++|++|+.. .+....++.++++|++.+|+ .. ++|+.|+|||+||+..++..+. .|+.+|+.|
T Consensus 383 ~~i~~D~Vi~a~G~~p~~~---~~~~~~gl~~~~~g~i~vd~~~~~~-~~T~~~gVfa~GD~~~~~~~~~-~Ai~~G~~a 457 (467)
T TIGR01318 383 FVLPADVVIMAFGFQPHAM---PWLAGHGITLDSWGRIITGDVSYLP-YQTTNPKIFAGGDAVRGADLVV-TAVAEGRQA 457 (467)
T ss_pred EEEECCEEEECCcCCCCcc---ccccccCccCCCCCCEEeCCccccC-ccCCCCCEEEECCcCCCccHHH-HHHHHHHHH
Confidence 7899999999999999642 24455677788889999983 22 7899999999999987665444 799999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.+|++.
T Consensus 458 A~~i~~~ 464 (467)
T TIGR01318 458 AQGILDW 464 (467)
T ss_pred HHHHHHH
Confidence 9999865
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=298.93 Aligned_cols=322 Identities=24% Similarity=0.313 Sum_probs=230.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
+..++|+||||||||+++|..|++.| ++|+|||+.+.+||.+.+++ |.+..+.++.....+.+...+++++.++.++
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERADRIGGLLRYGI-PDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCceeeecC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 45789999999999999999999999 99999999999999999887 6666666777777777888899999998886
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCC-CCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP-DGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
.+++.+.....||+||+|||+..++.+++||.+.++++++.+|+....... ...........+++|+|||+|++|+|+|
T Consensus 218 ~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 218 KDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred CcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 554444444589999999999668888999999899999887765432110 0000011123689999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ .+.++|+++.+..... ... .....+|.....
T Consensus 298 ~~~~~--------------------~ga~~Vt~~~~~~~~~---~~~-----------------~~~~~~~~~~~~---- 333 (471)
T PRK12810 298 GTAIR--------------------QGAKSVTQRDIMPMPP---SRR-----------------NKNNPWPYWPMK---- 333 (471)
T ss_pred HHHHH--------------------cCCCeEEEccccCCCc---ccc-----------------ccccCCcccchH----
Confidence 87765 5777888544332100 000 000000000000
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEec
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC 335 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~ 335 (415)
...+.+. +.||+++++..+.++. . +++++.++++..+.+. +|.+.. ..++.+++++
T Consensus 334 ----~~~~~~~-------------~~GV~i~~~~~~~~i~--~-~~g~v~~V~~~~~~~~---~g~~~~-~~g~~~~i~~ 389 (471)
T PRK12810 334 ----LEVSNAH-------------EEGVEREFNVQTKEFE--G-ENGKVTGVKVVRTELG---EGDFEP-VEGSEFVLPA 389 (471)
T ss_pred ----HHHHHHH-------------HcCCeEEeccCceEEE--c-cCCEEEEEEEEEEEec---CCCccc-cCCceEEEEC
Confidence 0011111 5689999999999997 5 4778888887655431 222111 1455678999
Q ss_pred CeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 336 GMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 336 D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|.||+|+|++|+.. .|....++.++++|.+.+|+.. ++|+.|||||+|||+.++..+. .|+.||+.||.+|++.
T Consensus 390 D~VI~A~G~~p~~~---~l~~~~gl~~~~~g~i~vd~~~-~~Ts~~gVfa~GD~~~g~~~~~-~Av~~G~~AA~~i~~~ 463 (471)
T PRK12810 390 DLVLLAMGFTGPEA---GLLAQFGVELDERGRVAAPDNA-YQTSNPKVFAAGDMRRGQSLVV-WAIAEGRQAARAIDAY 463 (471)
T ss_pred CEEEECcCcCCCch---hhccccCcccCCCCCEEeCCCc-ccCCCCCEEEccccCCCchhHH-HHHHHHHHHHHHHHHH
Confidence 99999999999642 2445667778888999998433 8899999999999997665544 7999999999998764
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=310.11 Aligned_cols=301 Identities=26% Similarity=0.378 Sum_probs=223.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+||||||||++||.+|++.| ++|+|||+.+.+||.+.+.+ |.+..+.+.+....+.+...+++++.++..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--~~VTV~Ek~~~lGG~l~~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~g~~~- 610 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGGVVKNII-PEFRISAESIQKDIELVKFHGVEFKYGCSP- 610 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CeEEEEecccccCceeeecc-cccCCCHHHHHHHHHHHHhcCcEEEEeccc-
Confidence 35689999999999999999999999 99999999999999998876 776666777776667777789999887542
Q ss_pred eEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 97 SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 97 ~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+++.+... ..||+||||||++.+++++++|.. .+++.+.+++..+..... ....+++|+|||+|++|+|+|
T Consensus 611 -d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~~~------~~~~GK~VVVIGGGnvAmD~A 682 (1012)
T TIGR03315 611 -DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEGPT------INPLGKHVVVVGGGNTAMDAA 682 (1012)
T ss_pred -ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhcccc------ccccCCeEEEECCCHHHHHHH
Confidence 23334433 369999999999767777888864 577778777765543211 123689999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ ..|.++|+++.|+.... +|....++.
T Consensus 683 r~a~R-------------------l~Ga~kVtLVyRr~~~~----------------------------Mpa~~eEl~-- 713 (1012)
T TIGR03315 683 RAALR-------------------VPGVEKVTVVYRRTKRY----------------------------MPASREELE-- 713 (1012)
T ss_pred HHHHH-------------------hCCCceEEEEEccCccc----------------------------cccCHHHHH--
Confidence 88875 23667999999875321 222211111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceeccCCceEEEe
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVGTGEFEDLD 334 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~~~g~~~~i~ 334 (415)
+.+ ++||.+++...+.++. ++.+ ++....+ ..+..|....+.+|+..+++
T Consensus 714 -------~al--------------eeGVe~~~~~~p~~I~-----~g~l---~v~~~~l~~~d~sGr~~~v~~Gee~~I~ 764 (1012)
T TIGR03315 714 -------EAL--------------EDGVDFKELLSPESFE-----DGTL---TCEVMKLGEPDASGRRRPVGTGETVDLP 764 (1012)
T ss_pred -------HHH--------------HcCCEEEeCCceEEEE-----CCeE---EEEEEEeecccCCCceeeecCCCeEEEE
Confidence 111 4589999988888885 3333 2221111 12233544444467777899
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
||+||+|+|+.|+. .+....++.++++|++.+|+.+ ++|+.|||||+|||+.++..+. .|+.||+.||.+|..
T Consensus 765 aD~VIvAiG~~Pnt----~lle~~GL~ld~~G~I~VD~~~-~~Ts~pgVFAaGD~a~GP~tVv-~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 765 ADTVIAAVGEQVDT----DLLQKNGIPLDEYGWPVVNQAT-GETNITNVFVIGDANRGPATIV-EAIADGRKAANAILS 837 (1012)
T ss_pred eCEEEEecCCcCCh----HHHHhcCcccCCCCCEEeCCCC-CccCCCCEEEEeCcCCCccHHH-HHHHHHHHHHHHHhc
Confidence 99999999999965 3445567788888999999866 7899999999999987777665 799999999999974
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=294.88 Aligned_cols=330 Identities=23% Similarity=0.296 Sum_probs=232.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+||+++|..|++.+ ++|+|||+.+.+||.+.|++ |.+...+++.....+.++..+++++.++.++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g--~~V~v~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAG--HTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeccC-CCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 5589999999999999999999999 99999999999999999987 66655666776666777888999999988865
Q ss_pred EEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCC---CCCCCCCCCCCCCeEEEEcCChhHHHH
Q 014990 98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP---DGKNLSPDLKSTDTAVILGQGNVALDV 174 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~k~V~VVG~G~sg~e~ 174 (415)
+++.+.....||+||+|||+..++.+++||.+.++++++.+++....... ....+......+|+|+|||+|++|+|+
T Consensus 219 ~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~ 298 (485)
T TIGR01317 219 DISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADC 298 (485)
T ss_pred ccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHH
Confidence 55444444579999999999658889999999999999887765432210 000111112368999999999999999
Q ss_pred HHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhc
Q 014990 175 ARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254 (415)
Q Consensus 175 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 254 (415)
|..+.+ .+.+.|+++.+.+......... ..+|.......
T Consensus 299 a~~a~~--------------------~ga~~V~vv~~~~~~~~~~~~~--------------------~~~~~~~~~~e- 337 (485)
T TIGR01317 299 VGTSLR--------------------HGAASVHQFEIMPKPPEARAKD--------------------NPWPEWPRVYR- 337 (485)
T ss_pred HHHHHH--------------------cCCCEEEEEEecCCChhhcccc--------------------cCCCccchhhh-
Confidence 877664 5778999998765321000000 00111100000
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCCceeE-EEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceecc-CCceEE
Q 014990 255 SRIQRRVYELLSKAAASASSQPMLGQREL-HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG-TGEFED 332 (415)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v-~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~-~g~~~~ 332 (415)
....+.... ...|+ .+++...+.++. .++++.+.++++..+.+..+.+|...++. .|+..+
T Consensus 338 ------~~~a~~e~~---------~~~gv~~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~ 400 (485)
T TIGR01317 338 ------VDYAHEEAA---------AHYGRDPREYSILTKEFI--GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEV 400 (485)
T ss_pred ------hHHHHHhhh---------hhcCccceEEecCcEEEE--EcCCCeEEEEEEEEEEeccCCCCCccceecCCceEE
Confidence 001111100 02344 345677888886 42246888888766655445566533332 566678
Q ss_pred EecCeeEEeeccC-CccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhc
Q 014990 333 LDCGMVLKSIGYK-SVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411 (415)
Q Consensus 333 i~~D~vi~atG~~-p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i 411 (415)
++||+||+|+|+. |+. .+....++.++++|.+.+++.. ++|+.|||||+|||+.++..+. .|+.+|+.||.+|
T Consensus 401 i~~D~Vi~AiG~~~p~~----~~~~~~gl~~~~~G~i~~~~~~-~~Ts~~gVfAaGD~~~g~~~~~-~Av~~G~~AA~~i 474 (485)
T TIGR01317 401 FEADLVLLAMGFVGPEQ----ILLDDFGVKKTRRGNISAGYDD-YSTSIPGVFAAGDCRRGQSLIV-WAINEGRKAAAAV 474 (485)
T ss_pred EECCEEEEccCcCCCcc----ccccccCcccCCCCCEEecCCC-ceECCCCEEEeeccCCCcHHHH-HHHHHHHHHHHHH
Confidence 9999999999997 543 3445567777878988665544 8999999999999987776655 6999999999999
Q ss_pred ccc
Q 014990 412 SLI 414 (415)
Q Consensus 412 ~~~ 414 (415)
++.
T Consensus 475 ~~~ 477 (485)
T TIGR01317 475 DRY 477 (485)
T ss_pred HHH
Confidence 764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=281.62 Aligned_cols=324 Identities=26% Similarity=0.359 Sum_probs=219.9
Q ss_pred hhhhhhcccccCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhh
Q 014990 4 ARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (415)
-+.|+++. .+....++|+|||+|++|+++|..|++.+ .+|++||+.+.+++.+.++. +.+..+.+......+.+.
T Consensus 5 ~~~~~~~~--~~~~~~~~VvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~l~ 79 (352)
T PRK12770 5 KFAFMCKE--KPPPTGKKVAIIGAGPAGLAAAGYLACLG--YEVHVYDKLPEPGGLMLFGI-PEFRIPIERVREGVKELE 79 (352)
T ss_pred hhhhhccc--CCCCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeeecC-cccccCHHHHHHHHHHHH
Confidence 35677773 33456789999999999999999999998 99999999999998876654 222222222333333444
Q ss_pred ccCeEEEeceEeceE---------------EEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCC
Q 014990 84 HERCSFFGNVTLGSS---------------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPD 148 (415)
Q Consensus 84 ~~~~~~~~~~~v~~~---------------v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~ 148 (415)
..+++++.++.+... +..+.....||+||||||++.++.|++||.+.++++++.++...+.....
T Consensus 80 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~ 159 (352)
T PRK12770 80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKL 159 (352)
T ss_pred hCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccc
Confidence 458888888766211 01111224799999999995577889999888888887666544332110
Q ss_pred -CCCC-CCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHH
Q 014990 149 -GKNL-SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELRE 226 (415)
Q Consensus 149 -~~~~-~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~ 226 (415)
.... ......+++|+|||+|.+|+|+|..|.+ .+.++|+++.|+.........
T Consensus 160 ~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~--------------------~g~~~Vtvi~~~~~~~~~~~~----- 214 (352)
T PRK12770 160 GYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVL--------------------LGAEKVYLAYRRTINEAPAGK----- 214 (352)
T ss_pred cccccccccccCCCEEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEEeecchhhCCCCH-----
Confidence 0000 0001147899999999999999999875 466679999887532111100
Q ss_pred HHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeee
Q 014990 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306 (415)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~ 306 (415)
+..+.+. .++|+++++.++.++. . ++.+..
T Consensus 215 ---------------------------------~~~~~l~-------------~~gi~i~~~~~v~~i~--~--~~~~~~ 244 (352)
T PRK12770 215 ---------------------------------YEIERLI-------------ARGVEFLELVTPVRII--G--EGRVEG 244 (352)
T ss_pred ---------------------------------HHHHHHH-------------HcCCEEeeccCceeee--c--CCcEeE
Confidence 0111121 5689999999999986 4 456666
Q ss_pred EEEeeeeecC-CCCCccee-ccCCceEEEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCe
Q 014990 307 VHFEKTALKG-GGPGKQYA-VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGL 383 (415)
Q Consensus 307 v~~~~~~~~~-~~~g~~~~-~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~v 383 (415)
+++...+..+ ++.+...+ ..++++++++||.||+++|++|+. .+... .++.++++|++.+|++ ++|+.|+|
T Consensus 245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~----~l~~~~~g~~~~~~g~i~vd~~--~~t~~~~v 318 (352)
T PRK12770 245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP----PFAKECLGIELNRKGEIVVDEK--HMTSREGV 318 (352)
T ss_pred EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc----hhhhcccCceecCCCcEeeCCC--cccCCCCE
Confidence 7665433211 00111111 124566689999999999999965 23333 5777788899999987 78999999
Q ss_pred eeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 384 YVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 384 faiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|++|||+.++.. +..|+.||+.+|.+|...
T Consensus 319 yaiGD~~~~~~~-~~~A~~~g~~aa~~i~~~ 348 (352)
T PRK12770 319 FAAGDVVTGPSK-IGKAIKSGLRAAQSIHEW 348 (352)
T ss_pred EEEcccccCcch-HHHHHHHHHHHHHHHHHH
Confidence 999999876654 448999999999998754
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=300.45 Aligned_cols=330 Identities=21% Similarity=0.299 Sum_probs=257.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|.|||.|||||+||..|-+.| +.|+++||.+++||++.||+ |.+...+.+.++..+++...++.|..|+++
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygi-pnmkldk~vv~rrv~ll~~egi~f~tn~ei 1858 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGI-PNMKLDKFVVQRRVDLLEQEGIRFVTNTEI 1858 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecC-CccchhHHHHHHHHHHHHhhCceEEeeccc
Confidence 457899999999999999999999999 99999999999999999999 888788888888889999999999999999
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcC-CCC-CCCCCCCCCCCCeEEEEcCChhHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG-HPD-GKNLSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~-~~~-~~~~~~~~~~~k~V~VVG~G~sg~e 173 (415)
++.+..+.....+|++|+|+|++.|+.+|+||.+.++++.+.+|++.-.. ..+ ....+.....+|+|+|||||.+|-+
T Consensus 1859 gk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~d 1938 (2142)
T KOG0399|consen 1859 GKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTD 1938 (2142)
T ss_pred cccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcccc
Confidence 99999988888999999999998899999999999999999999874321 111 1111222347999999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhh
Q 014990 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (415)
|...-.+ .|.+.|. ...+.|.|+..+-..
T Consensus 1939 cigtsvr--------------------hg~~sv~-------------------------------n~ellp~pp~~ra~~ 1967 (2142)
T KOG0399|consen 1939 CIGTSVR--------------------HGCKSVG-------------------------------NFELLPQPPPERAPD 1967 (2142)
T ss_pred ccccchh--------------------hccceec-------------------------------ceeecCCCCcccCCC
Confidence 9977775 5766652 234566777777778
Q ss_pred chHHHHHHHHHHHHHHhccCCC--CCC-CceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceecc-CCc
Q 014990 254 NSRIQRRVYELLSKAAASASSQ--PML-GQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG-TGE 329 (415)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~-~g~ 329 (415)
++|++|-.. ....+++.+. +.. ..+--.+ .-++++ .++++.+.++..-++.|+.+..|.|..+. .++
T Consensus 1968 npwpqwprv---frvdygh~e~~~~~g~dpr~y~v----ltk~f~--~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~s 2038 (2142)
T KOG0399|consen 1968 NPWPQWPRV---FRVDYGHAEAKEHYGSDPRTYSV----LTKRFI--GDDNGNVTGLETVRVEWEKDDKGRWQMKEINNS 2038 (2142)
T ss_pred CCCccCceE---EEeecchHHHHHHhCCCcceeee----eeeeee--ccCCCceeeEEEEEEEEEecCCCceEEEEcCCc
Confidence 888876432 0000000000 000 0111111 123555 43678999999999999999999977764 778
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHh
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVS 409 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~ 409 (415)
++.++||+||+|.||..+... ..++.++..+.++.+..-... ..++++++||+|||.+|.+.++ .|+.+|+++|.
T Consensus 2039 ee~~eadlv~lamgf~gpe~~---~~~~~~~~~d~rsni~t~~~~-y~t~v~~vfaagdcrrgqslvv-wai~egrq~a~ 2113 (2142)
T KOG0399|consen 2039 EEIIEADLVILAMGFVGPEKS---VIEQLNLKTDPRSNILTPKDS-YSTDVAKVFAAGDCRRGQSLVV-WAIQEGRQAAR 2113 (2142)
T ss_pred ceeeecceeeeeccccCcchh---hhhhcCcccCccccccCCCcc-ccccccceeecccccCCceEEE-EEehhhhHHHH
Confidence 889999999999999985522 345666777878877765544 7899999999999999999888 68999999999
Q ss_pred hccc
Q 014990 410 SLSL 413 (415)
Q Consensus 410 ~i~~ 413 (415)
++..
T Consensus 2114 ~vd~ 2117 (2142)
T KOG0399|consen 2114 QVDE 2117 (2142)
T ss_pred HHHH
Confidence 8863
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=293.25 Aligned_cols=320 Identities=24% Similarity=0.291 Sum_probs=228.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|+|||+|+||+++|..|++.| ++|+|||+.+.+||.+.+++ |.+..++++.....+.++..+++++.++.+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~~~gG~~~~~i-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLSKPGGVMRYGI-PSYRLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceEeecC-CcccCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 346889999999999999999999999 99999999999999998887 666566666666667788889999999888
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+.+++.+.....||+||+|||+..++.+++||.+..+++++.+++..++..... .......+++|+|||||.+|+|+|
T Consensus 357 ~~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~--~~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 357 GKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRG--EGPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred CCcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhcc--CCCcCCCCCcEEEECCchHHHHHH
Confidence 765555555568999999999966889999999888999988877655422100 000012479999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+... +..+..+|+++...... ..+|....++.
T Consensus 435 ~~l~r~~~---------------~~~g~~~V~v~~~~r~~---------------------------~~~~~~~~e~~-- 470 (604)
T PRK13984 435 RSMARLQK---------------MEYGEVNVKVTSLERTF---------------------------EEMPADMEEIE-- 470 (604)
T ss_pred HHHHhccc---------------cccCceEEEEeccccCc---------------------------ccCCCCHHHHH--
Confidence 99985100 01134567776432110 00222221111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceec-cCCceEEEe
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV-GTGEFEDLD 334 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~-~~g~~~~i~ 334 (415)
+.+ ++||+++++..++++. . +++.+.++++.......+.+|..... .++++++++
T Consensus 471 -------~~~--------------~~GV~i~~~~~~~~i~--~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~ 526 (604)
T PRK13984 471 -------EGL--------------EEGVVIYPGWGPMEVV--I-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVE 526 (604)
T ss_pred -------HHH--------------HcCCEEEeCCCCEEEE--c-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEE
Confidence 111 5689999999999986 4 46778888776543333334543222 245667899
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
+|.||+|+|++|+. ..+.-....++.. ++|.+.+|++ ++|++|||||+||++.++. ++ .|+.+|+.||.+|++.
T Consensus 527 aD~Vi~aiG~~p~~-~~l~~~~~~~l~~-~~G~i~vd~~--~~Ts~~gVfAaGD~~~~~~-~v-~Ai~~G~~AA~~I~~~ 600 (604)
T PRK13984 527 ADMVVEAIGQAPDY-SYLPEELKSKLEF-VRGRILTNEY--GQTSIPWLFAGGDIVHGPD-II-HGVADGYWAAEGIDMY 600 (604)
T ss_pred CCEEEEeeCCCCCh-hhhhhhhccCccc-cCCeEEeCCC--CccCCCCEEEecCcCCchH-HH-HHHHHHHHHHHHHHHH
Confidence 99999999999965 1111000112333 3688999986 8999999999999997764 44 6999999999999864
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=286.38 Aligned_cols=307 Identities=24% Similarity=0.331 Sum_probs=229.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
....++|+|||+||+||++|..|++.| ++|++||+.+.+||++.+++ |.+..++++.....+.+.+.++++..++.+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 346789999999999999999999999 99999999999999999988 777777777776667777889998888776
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+.+++.......||+||+|||+.....+.++|.+..++.....++....... ....+++|+|||+|.++++++
T Consensus 211 ~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-------~~~~gk~v~ViGgg~~a~d~a 283 (564)
T PRK12771 211 GEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-------PPFLGKRVVVIGGGNTAMDAA 283 (564)
T ss_pred CCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-------CcCCCCCEEEECChHHHHHHH
Confidence 5444443334479999999999666777899988888888877765432211 122589999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ .+.+.++++.|.+... ++.....+.
T Consensus 284 ~~a~~--------------------lga~~v~ii~r~~~~~----------------------------~~~~~~~~~-- 313 (564)
T PRK12771 284 RTARR--------------------LGAEEVTIVYRRTRED----------------------------MPAHDEEIE-- 313 (564)
T ss_pred HHHHH--------------------cCCCEEEEEEecCccc----------------------------CCCCHHHHH--
Confidence 87775 5667899998875422 121111111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceeccCCceEEEe
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVGTGEFEDLD 334 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~~~g~~~~i~ 334 (415)
+.. +.|++++++..+.++. . +++.+.++++..+.+ ..+.+|....+ .|+..+++
T Consensus 314 -------~a~--------------~~GVki~~~~~~~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~-~g~~~~i~ 368 (564)
T PRK12771 314 -------EAL--------------REGVEINWLRTPVEIE--G-DENGATGLRVITVEKMELDEDGRPSPV-TGEEETLE 368 (564)
T ss_pred -------HHH--------------HcCCEEEecCCcEEEE--c-CCCCEEEEEEEEEEecccCCCCCeeec-CCceEEEE
Confidence 111 5689999999999997 4 333443666554433 22334543333 56667999
Q ss_pred cCeeEEeeccCCccCCCCcccC-CCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDN-HKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~-~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|+||+|+|+.|+. .+.. ..++. +++|++.+|+.+ ++|++|||||+||+..++..+. .|+.||+.||.+|++
T Consensus 369 ~D~Vi~A~G~~p~~----~~~~~~~gl~-~~~G~i~vd~~~-~~ts~~~Vfa~GD~~~g~~~v~-~Av~~G~~aA~~i~~ 441 (564)
T PRK12771 369 ADLVVLAIGQDIDS----AGLESVPGVE-VGRGVVQVDPNF-MMTGRPGVFAGGDMVPGPRTVT-TAIGHGKKAARNIDA 441 (564)
T ss_pred CCEEEECcCCCCch----hhhhhccCcc-cCCCCEEeCCCC-ccCCCCCEEeccCcCCCchHHH-HHHHHHHHHHHHHHH
Confidence 99999999999964 2333 24566 678999999865 8999999999999988777655 799999999999875
Q ss_pred c
Q 014990 414 I 414 (415)
Q Consensus 414 ~ 414 (415)
.
T Consensus 442 ~ 442 (564)
T PRK12771 442 F 442 (564)
T ss_pred H
Confidence 4
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=269.17 Aligned_cols=306 Identities=17% Similarity=0.216 Sum_probs=213.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CCccccCCCCCCcchHHHHHHHHHHhhccC-eEEEeceEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTL 95 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v 95 (415)
.+++|||||||++|+++|..|.+..++.+|+|||+.+++ .-.+.|....+.....++.-+++.+++..+ ++|+.+...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 578999999999999999999997435899999999864 334445554555566677778888888544 999988776
Q ss_pred c-----eEEEecc-cccccCEEEEccCCCCCCCCCCCCCC-----CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEE
Q 014990 96 G-----SSVSLSE-LRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVI 164 (415)
Q Consensus 96 ~-----~~v~~~~-~~~~~d~lvlAtG~~~~~~~~i~g~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~V 164 (415)
. +.|++.+ ....||+||+|+|+ .+..+.+||+. .+.+..+.++..++....+..........-.+|+|
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs-~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~I 160 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGS-ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVI 160 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCC-cCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEE
Confidence 3 3466666 44689999999999 67777999954 33444455544444311111000000012247999
Q ss_pred EcCChhHHHHHHHHhcCcccccccCchhHHHHHhhc-CC---cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEG-SS---IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 165 VG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~-~~---~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
||||++|+|+|.+|.+... +.++. .. .-+|+++.+.+.++..|.++
T Consensus 161 vGgG~TGVElAgeL~~~~~------------~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~------------------ 210 (405)
T COG1252 161 VGGGPTGVELAGELAERLH------------RLLKKFRVDPSELRVILVEAGPRILPMFPPK------------------ 210 (405)
T ss_pred ECCChhHHHHHHHHHHHHH------------HHhhhhcCCccccEEEEEccCchhccCCCHH------------------
Confidence 9999999999999996221 11111 11 12799999988764443331
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
++....+.|. +.||++++++.++++. . + ++++.+
T Consensus 211 ----------------l~~~a~~~L~-------------~~GV~v~l~~~Vt~v~--~--~----~v~~~~--------- 244 (405)
T COG1252 211 ----------------LSKYAERALE-------------KLGVEVLLGTPVTEVT--P--D----GVTLKD--------- 244 (405)
T ss_pred ----------------HHHHHHHHHH-------------HCCCEEEcCCceEEEC--C--C----cEEEcc---------
Confidence 1222233333 7799999999999996 2 3 344332
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCeeeeeccccCC-----c
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-----T 394 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~-----~ 394 (415)
|+. +|++|++|||+|.++++ +... .+...+..|++.|++++ ...++|+|||+|||+.-+ +
T Consensus 245 -------g~~-~I~~~tvvWaaGv~a~~-----~~~~l~~~e~dr~Grl~V~~~L-~~~~~~~IFa~GD~A~~~~~~p~P 310 (405)
T COG1252 245 -------GEE-EIPADTVVWAAGVRASP-----LLKDLSGLETDRRGRLVVNPTL-QVPGHPDIFAAGDCAAVIDPRPVP 310 (405)
T ss_pred -------CCe-eEecCEEEEcCCCcCCh-----hhhhcChhhhccCCCEEeCCCc-ccCCCCCeEEEeccccCCCCCCCC
Confidence 222 69999999999999976 3344 35666778999999987 888999999999998533 3
Q ss_pred cchhhhhhhHHHHHhhcccc
Q 014990 395 GIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 395 ~~~~~a~~~g~~~a~~i~~~ 414 (415)
.....|+.||+.+|+||.+.
T Consensus 311 ~tAQ~A~Qqg~~~a~ni~~~ 330 (405)
T COG1252 311 PTAQAAHQQGEYAAKNIKAR 330 (405)
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 56668999999999999764
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=261.42 Aligned_cols=281 Identities=22% Similarity=0.299 Sum_probs=195.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCCc---chHHHHHHHHHHhhccCeEEEec
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSFFGN 92 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 92 (415)
++|+|||||+||+++|..|++.+ .+|+|||+.+ +||.+... ..|.+. ...++..++.+.++..+++++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARAN--LKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEE
Confidence 58999999999999999999999 9999999887 45543211 113332 33577788888888889988773
Q ss_pred eEece-------EEEeccc-ccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCCCCe
Q 014990 93 VTLGS-------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (415)
Q Consensus 93 ~~v~~-------~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 161 (415)
..+.. .+...+. ...||+||+|||+ .++.|++||.+. ..+++.... .. ....+++
T Consensus 78 ~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~i~g~~~~~~~~~~~~~~~----~~---------~~~~~~~ 143 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA-SARKLGIPGEDEFLGRGVSYCATC----DG---------PFFKNKE 143 (300)
T ss_pred EEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC-CcccCCCCChhhcCCccEEEeeec----Ch---------hhcCCCE
Confidence 33221 2222332 3579999999999 677788888641 222222110 00 1226789
Q ss_pred EEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccc
Q 014990 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (415)
Q Consensus 162 V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (415)
|+|||+|++|+|+|..|.+ ..++|+++.|++.+. ..+
T Consensus 144 v~ViG~G~~~~e~a~~l~~---------------------~~~~V~~v~~~~~~~---~~~------------------- 180 (300)
T TIGR01292 144 VAVVGGGDSAIEEALYLTR---------------------IAKKVTLVHRRDKFR---AEK------------------- 180 (300)
T ss_pred EEEECCChHHHHHHHHHHh---------------------hcCEEEEEEeCcccC---cCH-------------------
Confidence 9999999999999999985 346899999976431 000
Q ss_pred cCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce-eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR-ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 242 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
...+.+. +. +++++++..+.++. . ++.+..+++.+.
T Consensus 181 ------------------~~~~~l~-------------~~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~-------- 217 (300)
T TIGR01292 181 ------------------ILLDRLR-------------KNPNIEFLWNSTVKEIV--G--DNKVEGVKIKNT-------- 217 (300)
T ss_pred ------------------HHHHHHH-------------hCCCeEEEeccEEEEEE--c--cCcEEEEEEEec--------
Confidence 0111121 33 89999999998886 4 445555555431
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
.+++++++++|+||||+|++|+. .+.... +..+.+|++.+|++ +++++||||++|||+.........|
T Consensus 218 -----~~g~~~~i~~D~vi~a~G~~~~~----~~l~~~-~~~~~~g~i~v~~~--~~t~~~~vya~GD~~~~~~~~~~~A 285 (300)
T TIGR01292 218 -----VTGEEEELKVDGVFIAIGHEPNT----ELLKGL-LELDEGGYIVTDEG--MRTSVPGVFAAGDVRDKGYRQAVTA 285 (300)
T ss_pred -----CCCceEEEEccEEEEeeCCCCCh----HHHHHh-heecCCCcEEECCC--CccCCCCEEEeecccCcchhhhhhh
Confidence 14556689999999999999965 233333 45566799999987 7899999999999986233334479
Q ss_pred hhhHHHHHhhccccC
Q 014990 401 LYCAEETVSSLSLIS 415 (415)
Q Consensus 401 ~~~g~~~a~~i~~~~ 415 (415)
+.||+.||.+|.+.+
T Consensus 286 ~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 286 AGDGCIAALSAERYL 300 (300)
T ss_pred hhhHHHHHHHHHhhC
Confidence 999999999998753
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=275.40 Aligned_cols=289 Identities=17% Similarity=0.202 Sum_probs=200.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCC---------------------------c
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH---------------------------P 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~---------------------------~ 69 (415)
+..++|+||||||||++||.+|++.| .+|+|||+....|.+...++.|.+ .
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLG--MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 45689999999999999999999999 999999997554444444443321 1
Q ss_pred chHHHH-----------HHHHHHhhcc-CeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCee
Q 014990 70 ETKIVI-----------NQFSRVVQHE-RCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVH 134 (415)
Q Consensus 70 ~~~~~~-----------~~~~~~~~~~-~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~ 134 (415)
....+. ..+...+++. +++++.++.+ .+.++.+.....||+||||||+ .|+.|++||.+...++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs-~p~~p~i~G~~~~~~~ 159 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGA-RAAIPPIPGLDEVGYL 159 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCC-CCCCCCCCCCCcCceE
Confidence 111111 1233445555 8888887754 2234444344689999999999 7888899998766666
Q ss_pred echhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+..++.. . ...+++|+|||+|++|+|+|..|.+ .+ .+|+++.+++.
T Consensus 160 ~~~~~~~----~---------~~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G-~~Vtli~~~~~ 205 (463)
T PRK06370 160 TNETIFS----L---------DELPEHLVIIGGGYIGLEFAQMFRR--------------------FG-SEVTVIERGPR 205 (463)
T ss_pred cchHhhC----c---------cccCCEEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCC
Confidence 6544331 0 0147899999999999999999986 34 58999999865
Q ss_pred ccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccc
Q 014990 215 VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSF 294 (415)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 294 (415)
+...+ ..+ ..+.+.+.+. +.||+++++..+.++
T Consensus 206 ~l~~~-----------------------------~~~-----~~~~l~~~l~-------------~~GV~i~~~~~V~~i 238 (463)
T PRK06370 206 LLPRE-----------------------------DED-----VAAAVREILE-------------REGIDVRLNAECIRV 238 (463)
T ss_pred CCccc-----------------------------CHH-----HHHHHHHHHH-------------hCCCEEEeCCEEEEE
Confidence 42111 111 1111222222 568999999988888
Q ss_pred cccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC
Q 014990 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (415)
Q Consensus 295 ~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~ 374 (415)
. . .++.+ .+.+.. .+.+.++++|.||+|+|++|+.. .+. ....++.++++|++.+|+.
T Consensus 239 ~--~-~~~~~-~v~~~~---------------~~~~~~i~~D~Vi~A~G~~pn~~-~l~-l~~~g~~~~~~G~i~vd~~- 296 (463)
T PRK06370 239 E--R-DGDGI-AVGLDC---------------NGGAPEITGSHILVAVGRVPNTD-DLG-LEAAGVETDARGYIKVDDQ- 296 (463)
T ss_pred E--E-cCCEE-EEEEEe---------------CCCceEEEeCEEEECcCCCcCCC-CcC-chhhCceECCCCcEeECcC-
Confidence 6 3 22221 232221 12334799999999999999762 121 2456788888999999987
Q ss_pred CCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 375 ~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+..+. ....|..||+.+|.||..
T Consensus 297 -l~t~~~~IyAiGD~~~~~~-~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 297 -LRTTNPGIYAAGDCNGRGA-FTHTAYNDARIVAANLLD 333 (463)
T ss_pred -CcCCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHhC
Confidence 7899999999999986544 455799999999999864
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=270.59 Aligned_cols=282 Identities=18% Similarity=0.221 Sum_probs=193.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCc---------------------------c
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP---------------------------E 70 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~---------------------------~ 70 (415)
.++|+||||||||++||..+++.| .+|+|||+.. +||. ...++.|.+. .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHG--AKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 589999999999999999999999 9999999864 5663 3444434320 1
Q ss_pred hHH-----------HHHHHHHHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCC-CCCCCCCCCeee
Q 014990 71 TKI-----------VINQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRAL-GIPGEDLIGVHS 135 (415)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~-~i~g~~~~~v~~ 135 (415)
... +...+...++..+++++.+... ...+..+.....||+||||||+ .|+.| ++||.+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs-~p~~p~~i~g~~~--~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGG-KPSFPENIPGAEL--GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCCCce--eEc
Confidence 111 1112344556678888887664 2223333334689999999999 67777 7888642 122
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+.++.. . ...+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+
T Consensus 156 ~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g-~~Vtli~~~~~i 201 (450)
T TIGR01421 156 SDGFFA----L---------EELPKRVVIVGAGYIAVELAGVLHG--------------------LG-SETHLVIRHERV 201 (450)
T ss_pred HHHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecCCCC
Confidence 222221 0 0136899999999999999999986 34 589999998754
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
...+ ++++. ..+.+.+. ++||+++++..+.++.
T Consensus 202 l~~~-d~~~~---------------------------------~~~~~~l~-------------~~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 202 LRSF-DSMIS---------------------------------ETITEEYE-------------KEGINVHKLSKPVKVE 234 (450)
T ss_pred Cccc-CHHHH---------------------------------HHHHHHHH-------------HcCCEEEcCCEEEEEE
Confidence 3222 22221 11222222 6689999999888886
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. ..+....+.++ .++ +.++||.||||+|++|+.. .+ .....++.++++|++.+|++
T Consensus 235 --~-~~~~~~~v~~~----------------~g~-~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~G~i~vd~~-- 290 (450)
T TIGR01421 235 --K-TVEGKLVIHFE----------------DGK-SIDDVDELIWAIGRKPNTK-GL-GLENVGIKLNEKGQIIVDEY-- 290 (450)
T ss_pred --E-eCCceEEEEEC----------------CCc-EEEEcCEEEEeeCCCcCcc-cC-CccccCcEECCCCcEEeCCC--
Confidence 3 22221123221 221 3799999999999999761 11 23566788888999999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
++|+.|||||+|||+..+. ....|++||+.+|.+|.
T Consensus 291 ~~T~~p~IyAiGD~~~~~~-~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKVE-LTPVAIAAGRKLSERLF 326 (450)
T ss_pred CcCCCCCEEEEEecCCCcc-cHHHHHHHHHHHHHHHh
Confidence 8899999999999986544 45589999999999986
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=277.15 Aligned_cols=323 Identities=25% Similarity=0.363 Sum_probs=252.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|+|||+||||+++|..|.+.| ++|+++|+.+..||++.|++ |.+..++++.+...++++..|++|+.++.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 456799999999999999999999999 99999999999999999998 888899999999999999999999999999
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCC-CC-CCCCCCCCCeEEEEcCChhHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KN-LSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~k~V~VVG~G~sg~e 173 (415)
+++++.+++...||+|++|||+..++..++||.++++++.+.+|+...+..... .. .......+|+|+|||+|.+++|
T Consensus 197 G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D 276 (457)
T COG0493 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMD 276 (457)
T ss_pred CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHH
Confidence 999999998888999999999988999999999999999999999877532111 11 1223336699999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhh
Q 014990 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (415)
|+....+ +|+++|+.+.+...-. + ..
T Consensus 277 ~~~t~~r--------------------~Ga~~v~~~~~~~~~~------------------------~---~~------- 302 (457)
T COG0493 277 CAGTALR--------------------LGAKSVTCFYREDRDD------------------------E---TN------- 302 (457)
T ss_pred HHHHHhh--------------------cCCeEEEEeccccccc------------------------c---CC-------
Confidence 9987775 6899999886442210 0 00
Q ss_pred chHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC--cceecc-CCce
Q 014990 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG--KQYAVG-TGEF 330 (415)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g--~~~~~~-~g~~ 330 (415)
+|+.+.....+ .+...+|+.+.+...+.+++ .+++|++..+.+..+.+.....+ ....++ .|+.
T Consensus 303 -~~~~~~~~~~~----------~~a~eeg~~~~~~~~~~~~~--~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~ 369 (457)
T COG0493 303 -EWPTWAAQLEV----------RSAGEEGVERLPFVQPKAFI--GNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTE 369 (457)
T ss_pred -cccccchhhhh----------hhhhhcCCcccccCCceeEe--ecCCCcEeeeecccccccCcccccccccCccccCce
Confidence 11111000011 11226789999999999998 53578899888877655432122 222332 5777
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhh
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSS 410 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~ 410 (415)
..+++|+|+.|+|+.++..... + ...++..+..|++.++... .+|+.|++||.||+.++.+.++ .|+.+|+.+|+.
T Consensus 370 ~~~~aD~v~~aig~~~~~~~~~-~-~~~~~~~~~~g~i~~~~~~-~~ts~~~vfa~gD~~~g~~~vv-~ai~eGr~aak~ 445 (457)
T COG0493 370 KTDAADTVILAIGFEGDATDGL-L-LEFGLKLDKRGRIKVDENL-QQTSIPGVFAGGDAVRGAALVV-WAIAEGREAAKA 445 (457)
T ss_pred EEehHHHHHHHhccCCCccccc-c-cccccccCCCCceeccccc-ccccCCCeeeCceeccchhhhh-hHHhhchHHHHh
Confidence 8999999999999998652211 1 1225677888999999873 3899999999999998887777 699999999999
Q ss_pred cc
Q 014990 411 LS 412 (415)
Q Consensus 411 i~ 412 (415)
|+
T Consensus 446 i~ 447 (457)
T COG0493 446 ID 447 (457)
T ss_pred hh
Confidence 87
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=265.43 Aligned_cols=287 Identities=19% Similarity=0.297 Sum_probs=206.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCcc--------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPE-------------------------- 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~~-------------------------- 70 (415)
..++++|||+||||..+|.++++.| .+|.|+|+...+|| ++.+|+.|.+..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G--~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLG--LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 5789999999999999999999999 77999999965565 344454443211
Q ss_pred -hHHHHH-----------HHHHHhhccCeEEEeceEe---ceEEEecc---cccccCEEEEccCCCCCCCCCCCCCCCCC
Q 014990 71 -TKIVIN-----------QFSRVVQHERCSFFGNVTL---GSSVSLSE---LRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (415)
Q Consensus 71 -~~~~~~-----------~~~~~~~~~~~~~~~~~~v---~~~v~~~~---~~~~~d~lvlAtG~~~~~~~~i~g~~~~~ 132 (415)
.+++.. ....+++..+++++.+... ...+.+.. ....+|++|||||+ .|+.|+++|.+...
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS-~p~~~~~~~~~~~~ 159 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGS-RPRIPPGPGIDGAR 159 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC-CCcCCCCCCCCCCe
Confidence 111111 2344555667887776543 23444444 34589999999999 78888999988766
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+.+..+.+.. ..-+++++|||+|.+|+|+|..+.+ +|. +||++.|+
T Consensus 160 ~~~s~~~l~~-------------~~lP~~lvIiGgG~IGlE~a~~~~~--------------------LG~-~VTiie~~ 205 (454)
T COG1249 160 ILDSSDALFL-------------LELPKSLVIVGGGYIGLEFASVFAA--------------------LGS-KVTVVERG 205 (454)
T ss_pred EEechhhccc-------------ccCCCEEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecC
Confidence 7766553321 1258999999999999999999986 564 89999999
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+. |..+.++. +.+.+.+. +.++.++++..+.
T Consensus 206 ~~iL-----------------------------p~~D~ei~---------~~~~~~l~---------~~gv~i~~~~~v~ 238 (454)
T COG1249 206 DRIL-----------------------------PGEDPEIS---------KELTKQLE---------KGGVKILLNTKVT 238 (454)
T ss_pred CCCC-----------------------------CcCCHHHH---------HHHHHHHH---------hCCeEEEccceEE
Confidence 8763 33333332 12222221 4579999999888
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . .++. ..+++.+ ++..++++|.|++|+|.+||. .++.+ +..|+.++++|++.||
T Consensus 239 ~~~--~-~~~~-v~v~~~~----------------g~~~~~~ad~vLvAiGR~Pn~-~~LgL-e~~Gv~~~~rg~I~VD- 295 (454)
T COG1249 239 AVE--K-KDDG-VLVTLED----------------GEGGTIEADAVLVAIGRKPNT-DGLGL-ENAGVELDDRGFIKVD- 295 (454)
T ss_pred EEE--e-cCCe-EEEEEec----------------CCCCEEEeeEEEEccCCccCC-CCCCh-hhcCceECCCCCEEeC-
Confidence 886 3 2222 2343332 222279999999999999976 44444 5779999999999999
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+. ++|++|||||+|||..++. +...|++||+.||.+|..
T Consensus 296 ~~-~~Tnvp~IyA~GDV~~~~~-Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 296 DQ-MTTNVPGIYAIGDVIGGPM-LAHVAMAEGRIAAENIAG 334 (454)
T ss_pred Cc-cccCCCCEEEeeccCCCcc-cHhHHHHHHHHHHHHHhC
Confidence 44 8888999999999987666 777999999999999874
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=270.69 Aligned_cols=286 Identities=19% Similarity=0.244 Sum_probs=196.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc-------------------------ch---
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP-------------------------ET--- 71 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~-------------------------~~--- 71 (415)
++|+||||||||+++|.++++.| .+|+|||+...-|.++..++.|.+. ..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 58999999999999999999999 9999999987433334444333211 01
Q ss_pred ----HHHHHH-----HHHHhhccCeEEEeceEe---ceEEEeccc--ccccCEEEEccCCCCCCCCCCCCCCCCCeeech
Q 014990 72 ----KIVINQ-----FSRVVQHERCSFFGNVTL---GSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (415)
Q Consensus 72 ----~~~~~~-----~~~~~~~~~~~~~~~~~v---~~~v~~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~ 137 (415)
+++... +...++..+++++.+... .+.+...+. ...||+||||||+ .|+.|++||.+..++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs-~p~~p~i~G~~~~~~~~~~ 157 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGA-RPAIPPIPGLKEAGYLTSE 157 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCC-CCCCCCCCCcccCceECch
Confidence 111111 234566778888877654 233444442 3479999999999 7888899998765555544
Q ss_pred hhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccC
Q 014990 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (415)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~ 217 (415)
++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+..
T Consensus 158 ~~~~----~---------~~~~~~vvIIGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 158 EALA----L---------DRIPESLAVIGGGAIGVELAQAFAR--------------------LG-SEVTILQRSDRLLP 203 (463)
T ss_pred hhhC----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCCcCCC
Confidence 3321 0 0135899999999999999999986 34 58999999865421
Q ss_pred CCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccccc
Q 014990 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (415)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 297 (415)
.+ ++ + +...+.+.+. ..||+++++..+.++.
T Consensus 204 ~~-d~----------------------------~-----~~~~l~~~l~-------------~~gV~i~~~~~V~~i~-- 234 (463)
T TIGR02053 204 RE-EP----------------------------E-----ISAAVEEALA-------------EEGIEVVTSAQVKAVS-- 234 (463)
T ss_pred cc-CH----------------------------H-----HHHHHHHHHH-------------HcCCEEEcCcEEEEEE--
Confidence 11 11 1 1111222222 5689999999888886
Q ss_pred CCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCC
Q 014990 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (415)
Q Consensus 298 ~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~ 377 (415)
. ++....+.+.. .++++++++|.||+|+|++|+. ..+. ....++.++++|++.+|++ ++
T Consensus 235 ~--~~~~~~v~~~~---------------~~~~~~i~~D~ViiA~G~~p~~-~~l~-l~~~g~~~~~~G~i~vd~~--~~ 293 (463)
T TIGR02053 235 V--RGGGKIITVEK---------------PGGQGEVEADELLVATGRRPNT-DGLG-LEKAGVKLDERGGILVDET--LR 293 (463)
T ss_pred E--cCCEEEEEEEe---------------CCCceEEEeCEEEEeECCCcCC-CCCC-ccccCCEECCCCcEeECCC--cc
Confidence 3 32222233221 2233579999999999999976 2121 3556778888999999986 88
Q ss_pred cccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 378 t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 294 Ts~~~VyAiGD~~~~~~-~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 294 TSNPGIYAAGDVTGGLQ-LEYVAAKEGVVAAENALG 328 (463)
T ss_pred CCCCCEEEeeecCCCcc-cHhHHHHHHHHHHHHhcC
Confidence 99999999999986544 455899999999999864
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=257.92 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=192.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC----CCCC---cchHHHHHHHHHHhhccCeEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV----APDH---PETKIVINQFSRVVQHERCSF 89 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~ 89 (415)
.+.++|+||||||||++||..|++++ .++++||.. ..||.+.... .|.. ....++.+++.+....++.++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI 80 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 46889999999999999999999999 999999954 4555432211 1221 123345667777777666666
Q ss_pred EeceEece-------EEEecccccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCCC
Q 014990 90 FGNVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (415)
Q Consensus 90 ~~~~~v~~-------~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (415)
..+..... .++.+.....||+||+|||+ .|+.|++||.+ ...++++. ..... ...+
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~-~~~~~~i~g~~~~~~~~v~~~~-~~~~~------------~~~g 146 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACA-TCDGF------------FYRN 146 (321)
T ss_pred EeeEEEEEEecCCeEEEEecCCEEEECEEEECCCC-CCCCCCCCCHHHcCCCcEEEee-cCCHH------------HcCC
Confidence 55432111 12222234579999999999 57888999854 22333321 11110 1268
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 239 (415)
++|+|||+|.+|+|+|..|.+ ..++|+++.|++.+.. ..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~---------------------~~~~Vtlv~~~~~~~~---~~----------------- 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSN---------------------IASEVHLIHRRDGFRA---EK----------------- 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEECCccCC---CH-----------------
Confidence 999999999999999999986 3468999999864310 00
Q ss_pred cccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCC
Q 014990 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (415)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~ 319 (415)
.+++.+.+.+ .+.+|+++++..++++. . +++.+..+++.+..
T Consensus 186 ----------------~~~~~~~~~l-------------~~~gV~i~~~~~v~~v~--~-~~~~~~~v~~~~~~------ 227 (321)
T PRK10262 186 ----------------ILIKRLMDKV-------------ENGNIILHTNRTLEEVT--G-DQMGVTGVRLRDTQ------ 227 (321)
T ss_pred ----------------HHHHHHHhhc-------------cCCCeEEEeCCEEEEEE--c-CCccEEEEEEEEcC------
Confidence 0111121222 26789999999999987 4 33456666665321
Q ss_pred CcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC---CCCcccCCeeeeeccccCC-cc
Q 014990 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGP-TG 395 (415)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~---~~~t~~p~vfaiGD~~~~~-~~ 395 (415)
..++.+++++|.|||++|++|+. .+... ++.+ ++|++.+|+.. .++|++|||||+|||+..+ ..
T Consensus 228 ------~~~~~~~i~~D~vv~a~G~~p~~----~l~~~-~l~~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~ 295 (321)
T PRK10262 228 ------NSDNIESLDVAGLFVAIGHSPNT----AIFEG-QLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ 295 (321)
T ss_pred ------CCCeEEEEECCEEEEEeCCccCh----hHhhc-cccc-cCCEEEECCCCcccccccCCCCEEECeeccCCCcce
Confidence 02344689999999999999976 22221 3434 35889888621 1789999999999998644 34
Q ss_pred chhhhhhhHHHHHhhcccc
Q 014990 396 IIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 396 ~~~~a~~~g~~~a~~i~~~ 414 (415)
++ .|+.+|..||..|++.
T Consensus 296 ~~-~A~~~g~~Aa~~~~~~ 313 (321)
T PRK10262 296 AI-TSAGTGCMAALDAERY 313 (321)
T ss_pred EE-EEehhHHHHHHHHHHH
Confidence 44 6999999999988764
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=252.42 Aligned_cols=280 Identities=23% Similarity=0.244 Sum_probs=204.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCC---cchHHHHHHHHHHhhccCeEEE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
+.++|+|||||||||+||.++.|.+ .+++||+....+||++... -.|++ ....++.+.+.++...+++++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~--l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcC--CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence 5689999999999999999999999 9955555555566554322 11332 2345777788888888888877
Q ss_pred eceEec-------eEEEecccccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCCCC
Q 014990 91 GNVTLG-------SSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 91 ~~~~v~-------~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k 160 (415)
...... +.+++++....+++||||||+ .++.|.+||.. ..+++++.. +. + ...+|
T Consensus 80 ~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~-~~~~~~~~~e~e~~g~gv~yc~~-cd---g----------~~~~k 144 (305)
T COG0492 80 EDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGA-GARKLGVPGEEEFEGKGVSYCAT-CD---G----------FFKGK 144 (305)
T ss_pred EEEEEEEeecCceEEEEECCCeEEEeEEEECcCC-cccCCCCCcchhhcCCceEEeee-cC---c----------cccCC
Confidence 643321 234444555678999999999 78888887643 335555432 11 1 22689
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|++++|-|..|.+ -+++|++++|++.+.. .+.+.++
T Consensus 145 ~v~ViGgG~sAve~Al~L~~---------------------~a~~Vtlv~r~~~~ra---~~~~~~~------------- 187 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSK---------------------IAKKVTLVHRRDEFRA---EEILVER------------- 187 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHH---------------------hcCeEEEEecCcccCc---CHHHHHH-------------
Confidence 99999999999999999996 4468999999986532 1111111
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
+.. ..++.++++..+.++. + ++ +.++++.+.
T Consensus 188 ------------------------l~~------------~~~i~~~~~~~i~ei~--G--~~-v~~v~l~~~-------- 218 (305)
T COG0492 188 ------------------------LKK------------NVKIEVLTNTVVKEIL--G--DD-VEGVVLKNV-------- 218 (305)
T ss_pred ------------------------HHh------------cCCeEEEeCCceeEEe--c--Cc-cceEEEEec--------
Confidence 111 2279999999999998 5 44 778888763
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
.++..++++|-++.++|+.|++ .|....+. ++++|++.+++. ++||+|||||+||+...+...+..|
T Consensus 219 ------~~~~~~~~~~gvf~~iG~~p~~----~~~~~~~~-~~~~g~I~v~~~--~~TsvpGifAaGDv~~~~~rqi~ta 285 (305)
T COG0492 219 ------KGEEKELPVDGVFIAIGHLPNT----ELLKGLGV-LDENGYIVVDEE--METSVPGIFAAGDVADKNGRQIATA 285 (305)
T ss_pred ------CCceEEEEeceEEEecCCCCch----HHHhhccc-cCCCCcEEcCCC--cccCCCCEEEeEeeccCcccEEeeh
Confidence 2566689999999999999976 34444454 788999999998 8999999999999987665444489
Q ss_pred hhhHHHHHhhccc
Q 014990 401 LYCAEETVSSLSL 413 (415)
Q Consensus 401 ~~~g~~~a~~i~~ 413 (415)
..+|..||.++.+
T Consensus 286 ~~~G~~Aa~~a~~ 298 (305)
T COG0492 286 AGDGAIAALSAER 298 (305)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999987754
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-31 Score=266.17 Aligned_cols=287 Identities=15% Similarity=0.189 Sum_probs=191.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCcc--------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPE-------------------------- 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~~-------------------------- 70 (415)
..++|+||||||||+++|..|++.| .+|+|||+.+.+|| +...++.|.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence 4689999999999999999999999 99999999877777 334444343210
Q ss_pred hHHHHHH-----------HHHHhhccCeEEEeceEe---ceE--EEeccc---ccccCEEEEccCCCCCC-CCCCCCCCC
Q 014990 71 TKIVINQ-----------FSRVVQHERCSFFGNVTL---GSS--VSLSEL---RQLYHVVVLAYGAESDR-ALGIPGEDL 130 (415)
Q Consensus 71 ~~~~~~~-----------~~~~~~~~~~~~~~~~~v---~~~--v~~~~~---~~~~d~lvlAtG~~~~~-~~~i~g~~~ 130 (415)
...+... ....++..+++++.+... ... ++..++ ...||+||||||+ .|+ +|.+++ +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~p~~~~-~~ 158 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGS-RPIQLPFIPH-DD 158 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCC-CCCCCCCCCC-CC
Confidence 1111111 123445668988877643 112 322232 3589999999999 565 444554 33
Q ss_pred CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEe
Q 014990 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (415)
Q Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 210 (415)
+++++..+... + ...+++|+|||+|++|+|+|..+.+ .+ .+|+++.
T Consensus 159 ~~v~~~~~~~~-~------------~~~~~~vvIiGgG~iG~E~A~~l~~--------------------~G-~~Vtlv~ 204 (471)
T PRK06467 159 PRIWDSTDALE-L------------KEVPKRLLVMGGGIIGLEMGTVYHR--------------------LG-SEVDVVE 204 (471)
T ss_pred CcEEChHHhhc-c------------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CCEEEEe
Confidence 44554433321 0 0146899999999999999999986 34 5899999
Q ss_pred ecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccc
Q 014990 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (415)
Q Consensus 211 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (415)
+.+.+...+ ++++ +..+.+.+. ++ ++++++..
T Consensus 205 ~~~~il~~~-d~~~---------------------------------~~~~~~~l~-------------~~-v~i~~~~~ 236 (471)
T PRK06467 205 MFDQVIPAA-DKDI---------------------------------VKVFTKRIK-------------KQ-FNIMLETK 236 (471)
T ss_pred cCCCCCCcC-CHHH---------------------------------HHHHHHHHh-------------hc-eEEEcCCE
Confidence 887543221 1111 111112221 34 88888888
Q ss_pred cccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceee
Q 014990 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (415)
Q Consensus 291 ~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v 370 (415)
+.++. . .++.+ .+++.+. .++.+++++|.|||++|++|+. ..+ .....++.++++|++.+
T Consensus 237 v~~i~--~-~~~~~-~v~~~~~--------------~~~~~~i~~D~vi~a~G~~pn~-~~l-~~~~~gl~~~~~G~I~V 296 (471)
T PRK06467 237 VTAVE--A-KEDGI-YVTMEGK--------------KAPAEPQRYDAVLVAVGRVPNG-KLL-DAEKAGVEVDERGFIRV 296 (471)
T ss_pred EEEEE--E-cCCEE-EEEEEeC--------------CCcceEEEeCEEEEeecccccC-Ccc-ChhhcCceECCCCcEee
Confidence 88775 3 22222 2333210 2334579999999999999976 211 22456788888999999
Q ss_pred ccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 371 ~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 297 d~~--~~t~~p~VyAiGDv~~~~~-la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 297 DKQ--CRTNVPHIFAIGDIVGQPM-LAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred CCC--cccCCCCEEEehhhcCCcc-cHHHHHHHHHHHHHHHcC
Confidence 987 7899999999999986554 455799999999999864
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=265.39 Aligned_cols=283 Identities=16% Similarity=0.232 Sum_probs=192.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCc---------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP--------------------------- 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~--------------------------- 69 (415)
..++|+||||||||++||..|++.| .+|+|||+. .+||. ...++.|.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYG--AKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 4589999999999999999999999 999999986 56653 2333223210
Q ss_pred chHH-----------HHHHHHHHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 014990 70 ETKI-----------VINQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (415)
Q Consensus 70 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~ 135 (415)
.... +.+.+.+.++..+++++.+... ...++++.....||+||||||+ .|+.|++||.+ .+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~g~~--~~~~ 156 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGG-RPSIPDIPGAE--YGIT 156 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCcc--eeEc
Confidence 0011 1122334455678888877643 1234443334589999999999 67888898864 2333
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+.++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+
T Consensus 157 ~~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~ 202 (450)
T PRK06116 157 SDGFFA----L---------EELPKRVAVVGAGYIAVEFAGVLNG--------------------LG-SETHLFVRGDAP 202 (450)
T ss_pred hhHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCCC
Confidence 332221 0 1146899999999999999999985 34 589999988653
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
...+. ++ +...+.+.+. +.||+++++..+.++.
T Consensus 203 l~~~~-~~---------------------------------~~~~l~~~L~-------------~~GV~i~~~~~V~~i~ 235 (450)
T PRK06116 203 LRGFD-PD---------------------------------IRETLVEEME-------------KKGIRLHTNAVPKAVE 235 (450)
T ss_pred ccccC-HH---------------------------------HHHHHHHHHH-------------HCCcEEECCCEEEEEE
Confidence 21111 11 1111222222 6689999999998886
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. .++....+++. +| +++++|.||+|+|++|+. ..+ .....++.++++|++.+|++
T Consensus 236 --~-~~~g~~~v~~~----------------~g--~~i~~D~Vv~a~G~~p~~-~~l-~l~~~g~~~~~~G~i~vd~~-- 290 (450)
T PRK06116 236 --K-NADGSLTLTLE----------------DG--ETLTVDCLIWAIGREPNT-DGL-GLENAGVKLNEKGYIIVDEY-- 290 (450)
T ss_pred --E-cCCceEEEEEc----------------CC--cEEEeCEEEEeeCCCcCC-CCC-CchhcCceECCCCcEecCCC--
Confidence 3 22221122221 22 369999999999999975 212 13456788888999999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|++|||||+|||+..+. ....|++||+.+|.+|..
T Consensus 291 ~~Ts~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGRVE-LTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCCCcC-cHHHHHHHHHHHHHHHhC
Confidence 7899999999999986544 455899999999999864
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=270.64 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=200.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC--C--CCC--CcchHHHHHHHHHHhhccCeEEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--V--APD--HPETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~--~--~~~--~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
...++|+||||||||++||.+|++.| .+|+||++ .+||.+... + .+. +....++.+.+.+.++.+++.++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 45789999999999999999999999 99999975 466655311 1 011 12344667778888888889988
Q ss_pred eceEec--------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 91 GNVTLG--------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 91 ~~~~v~--------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
.++.+. ..+...++ ...||+||+|||+ .++.|++||.+ ..+++..... .. ....
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa-~~~~~~ipG~~~~~~~~v~~~~~~----~~---------~~~~ 351 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA-RWRKLGVPGEKEYIGKGVAYCPHC----DG---------PFFK 351 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC-CcCCCCCCCHHHcCCCeEEEeecc----Ch---------hhcC
Confidence 776542 12333333 3579999999999 57888899853 2233322110 00 1226
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|++|+|+|..|.+ ..++|+++.+.+.+.. .
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~---------------------~g~~Vtli~~~~~l~~---~----------------- 390 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAG---------------------IVRHVTVLEFADELKA---D----------------- 390 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHh---------------------cCcEEEEEEeCCcCCh---h-----------------
Confidence 8999999999999999999985 3468999987754210 0
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
+.+.+.+. ...||+++++..+.++. . +++.+.++.+.+..
T Consensus 391 --------------------~~l~~~l~------------~~~gV~i~~~~~v~~i~--~-~~~~v~~v~~~~~~----- 430 (515)
T TIGR03140 391 --------------------KVLQDKLK------------SLPNVDILTSAQTTEIV--G-DGDKVTGIRYQDRN----- 430 (515)
T ss_pred --------------------HHHHHHHh------------cCCCCEEEECCeeEEEE--c-CCCEEEEEEEEECC-----
Confidence 00111111 03589999999999987 4 34666667665421
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchh
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~ 398 (415)
+++.++++||.|++++|++|++ .+.... +.++++|++.+|++ ++|++|||||+|||+..+.+...
T Consensus 431 --------~~~~~~i~~D~vi~a~G~~Pn~----~~l~~~-~~~~~~G~I~vd~~--~~Ts~p~IyAaGDv~~~~~~~~~ 495 (515)
T TIGR03140 431 --------SGEEKQLDLDGVFVQIGLVPNT----EWLKDA-VELNRRGEIVIDER--GRTSVPGIFAAGDVTTVPYKQII 495 (515)
T ss_pred --------CCcEEEEEcCEEEEEeCCcCCc----hHHhhh-cccCCCCeEEECCC--CCCCCCCEEEcccccCCccceEE
Confidence 3455689999999999999976 333333 56677899999997 78999999999999876654444
Q ss_pred hhhhhHHHHHhhcccc
Q 014990 399 TNLYCAEETVSSLSLI 414 (415)
Q Consensus 399 ~a~~~g~~~a~~i~~~ 414 (415)
.|+.+|..||.+|.+.
T Consensus 496 ~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 496 IAMGEGAKAALSAFDY 511 (515)
T ss_pred EEEccHHHHHHHHHHH
Confidence 7999999999988753
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=267.70 Aligned_cols=290 Identities=13% Similarity=0.134 Sum_probs=195.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc---cccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++|||||||+||+++|..|++.+++.+|+|||+++.++.. +.+.....+....++.....+.++..++++..+..+.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 4799999999999999999998877899999999875411 1111101112233334444455666788887765442
Q ss_pred ------eEEEecc---c-cc--ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHH--hcCCCCCCCCCCCCCCCCeE
Q 014990 97 ------SSVSLSE---L-RQ--LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTA 162 (415)
Q Consensus 97 ------~~v~~~~---~-~~--~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~V 162 (415)
+.+.+.+ . .. .||+||||||+ .|+.|++||.+.+++++...+... +.... . -..+++|
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l------~-~~~~~~v 152 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA-RPIIPPIKNINLENVYTLKSMEDGLALKELL------K-DEEIKNI 152 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHHHHHHH------h-hcCCCEE
Confidence 2333322 2 23 49999999999 677788999887777765443221 11100 0 0147899
Q ss_pred EEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccccc
Q 014990 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (415)
Q Consensus 163 ~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (415)
+|||+|.+|+|+|..+.+ .+ .+|+++.+++.+.....++++
T Consensus 153 vVvGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~~~~~~------------------ 193 (444)
T PRK09564 153 VIIGAGFIGLEAVEAAKH--------------------LG-KNVRIIQLEDRILPDSFDKEI------------------ 193 (444)
T ss_pred EEECCCHHHHHHHHHHHh--------------------cC-CcEEEEeCCcccCchhcCHHH------------------
Confidence 999999999999999885 33 589999887643211111111
Q ss_pred CCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcc
Q 014990 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (415)
Q Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~ 322 (415)
...+.+.+. +.||+++++..+.++. . ++.+..+..
T Consensus 194 ---------------~~~l~~~l~-------------~~gI~v~~~~~v~~i~--~--~~~~~~v~~------------- 228 (444)
T PRK09564 194 ---------------TDVMEEELR-------------ENGVELHLNEFVKSLI--G--EDKVEGVVT------------- 228 (444)
T ss_pred ---------------HHHHHHHHH-------------HCCCEEEcCCEEEEEe--c--CCcEEEEEe-------------
Confidence 112222222 5689999999888885 3 443322221
Q ss_pred eeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---------
Q 014990 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP--------- 393 (415)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~--------- 393 (415)
.+. +++||.+|+|+|++|+. ++....|+.++++|++.+|++ ++|++|||||+|||+..+
T Consensus 229 ----~~~--~i~~d~vi~a~G~~p~~----~~l~~~gl~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~ 296 (444)
T PRK09564 229 ----DKG--EYEADVVIVATGVKPNT----EFLEDTGLKTLKNGAIIVDEY--GETSIENIYAAGDCATIYNIVSNKNVY 296 (444)
T ss_pred ----CCC--EEEcCEEEECcCCCcCH----HHHHhcCccccCCCCEEECCC--cccCCCCEEEeeeEEEEEeccCCCeee
Confidence 111 59999999999999965 355667777777899999987 789999999999998531
Q ss_pred ccchhhhhhhHHHHHhhccc
Q 014990 394 TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 ~~~~~~a~~~g~~~a~~i~~ 413 (415)
......|+.||+.+|.||..
T Consensus 297 ~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 297 VPLATTANKLGRMVGENLAG 316 (444)
T ss_pred ccchHHHHHHHHHHHHHhcC
Confidence 22445799999999999864
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=263.60 Aligned_cols=281 Identities=17% Similarity=0.208 Sum_probs=190.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCc----------------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP---------------------------- 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~---------------------------- 69 (415)
.++|+||||||||++||..+++.| .+|+|||+. .+||.. ..++.|.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHG--AKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 589999999999999999999999 999999985 566643 334434321
Q ss_pred ---------chHHHHHHHHHHhhccCeEEEeceEe--c-eEEEe--cccccccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 014990 70 ---------ETKIVINQFSRVVQHERCSFFGNVTL--G-SSVSL--SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (415)
Q Consensus 70 ---------~~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~v~~--~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~ 135 (415)
....+...+...++..+++++.+... + ..+.. +.....||+||||||+ .|..|++||.+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs-~p~~p~i~G~~~--~~~ 155 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGG-RPQKPNLPGHEL--GIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCC-cCCCCCCCCccc--eec
Confidence 00122234455666778888877542 1 12222 2223589999999999 678888998642 222
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+.+... . ...+++|+|||+|.+|+|+|..+.+ .+ .+|+++.+.+.+
T Consensus 156 ~~~~~~----l---------~~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G-~~Vtli~~~~~~ 201 (446)
T TIGR01424 156 SNEAFH----L---------PTLPKSILILGGGYIAVEFAGIWRG--------------------LG-VQVTLIYRGELI 201 (446)
T ss_pred hHHhhc----c---------cccCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEEeCCCC
Confidence 222111 1 0147899999999999999999985 34 589999988654
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
...+. +++ +..+.+.+. +.|++++++..+.++.
T Consensus 202 l~~~d-~~~---------------------------------~~~l~~~l~-------------~~gV~i~~~~~v~~i~ 234 (446)
T TIGR01424 202 LRGFD-DDM---------------------------------RALLARNME-------------GRGIRIHPQTSLTSIT 234 (446)
T ss_pred CcccC-HHH---------------------------------HHHHHHHHH-------------HCCCEEEeCCEEEEEE
Confidence 22111 111 111222222 5689999998888885
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. .++.+ .+.+. ++ +++++|.||+|+|++|+. ..+ .....++.++++|++.+|++
T Consensus 235 --~-~~~~~-~v~~~----------------~g--~~i~~D~viva~G~~pn~-~~l-~l~~~g~~~~~~G~i~vd~~-- 288 (446)
T TIGR01424 235 --K-TDDGL-KVTLS----------------HG--EEIVADVVLFATGRSPNT-KGL-GLEAAGVELNDAGAIAVDEY-- 288 (446)
T ss_pred --E-cCCeE-EEEEc----------------CC--cEeecCEEEEeeCCCcCC-CcC-CccccCeEECCCCcEEeCCC--
Confidence 3 12221 22221 12 379999999999999975 212 12556788888899999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+... .+...|++||+.+|.+|..
T Consensus 289 ~~Ts~~~IyA~GD~~~~~-~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDRI-NLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCCCc-cchhHHHHHHHHHHHHHhc
Confidence 789999999999998644 4555899999999999863
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=262.64 Aligned_cols=286 Identities=16% Similarity=0.171 Sum_probs=196.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCc--------------------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP-------------------------- 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~-------------------------- 69 (415)
+..++|+||||||||+++|.+|++.| .+|+|||+.+.+||.. ..+..|.+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRI 80 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCcc
Confidence 45689999999999999999999999 9999999987777754 333333211
Q ss_pred chHHHH-----------HHHHHHhhccCeEEEeceEe--c-e--EEEeccc---ccccCEEEEccCCCCCCCCCCCCCCC
Q 014990 70 ETKIVI-----------NQFSRVVQHERCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (415)
Q Consensus 70 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~v--~-~--~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~ 130 (415)
...++. ..+...+++.+++++.+... + . .+...++ ...||+||||||+ .|+.|++++.+.
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs-~p~~p~~~~~~~ 159 (461)
T PRK05249 81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGS-RPYRPPDVDFDH 159 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCCCC
Confidence 011111 12234455668888777542 1 1 2222222 3579999999999 677778777766
Q ss_pred CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEe
Q 014990 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (415)
Q Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 210 (415)
+.++++.++.... ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 160 ~~v~~~~~~~~~~-------------~~~~~v~IiGgG~~g~E~A~~l~~--------------------~g-~~Vtli~ 205 (461)
T PRK05249 160 PRIYDSDSILSLD-------------HLPRSLIIYGAGVIGCEYASIFAA--------------------LG-VKVTLIN 205 (461)
T ss_pred CeEEcHHHhhchh-------------hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEe
Confidence 6677665443211 147999999999999999999986 34 5899999
Q ss_pred ecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccc
Q 014990 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (415)
Q Consensus 211 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (415)
|++.+... .++++ ...+.+.+. +.|++++++..
T Consensus 206 ~~~~~l~~-~d~~~---------------------------------~~~l~~~l~-------------~~gI~v~~~~~ 238 (461)
T PRK05249 206 TRDRLLSF-LDDEI---------------------------------SDALSYHLR-------------DSGVTIRHNEE 238 (461)
T ss_pred cCCCcCCc-CCHHH---------------------------------HHHHHHHHH-------------HcCCEEEECCE
Confidence 98754321 11111 111222222 56899999988
Q ss_pred cccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceee
Q 014990 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (415)
Q Consensus 291 ~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v 370 (415)
+.++. . .++.+ .+++. +| +++++|.||+|+|++|+.. .+ .....++.++++|++.+
T Consensus 239 v~~i~--~-~~~~~-~v~~~----------------~g--~~i~~D~vi~a~G~~p~~~-~l-~l~~~g~~~~~~G~i~v 294 (461)
T PRK05249 239 VEKVE--G-GDDGV-IVHLK----------------SG--KKIKADCLLYANGRTGNTD-GL-NLENAGLEADSRGQLKV 294 (461)
T ss_pred EEEEE--E-eCCeE-EEEEC----------------CC--CEEEeCEEEEeecCCcccc-CC-CchhhCcEecCCCcEee
Confidence 88886 3 22221 12211 22 2699999999999999761 11 23456788888899999
Q ss_pred ccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 371 ~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 295 d~~--~~t~~~~IyAiGD~~~~~~-~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 295 NEN--YQTAVPHIYAVGDVIGFPS-LASASMDQGRIAAQHAVG 334 (461)
T ss_pred CCC--cccCCCCEEEeeecCCCcc-cHhHHHHHHHHHHHHHcC
Confidence 987 8899999999999986554 455799999999999863
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=266.66 Aligned_cols=283 Identities=20% Similarity=0.237 Sum_probs=202.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc--CC--CCC--CcchHHHHHHHHHHhhccCeEEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~--~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
...++|+||||||||++||.+|++.| .+|+||++. +||.+.. .+ .+. +....++.+.+.+.++.+++++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G--~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKG--IRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 45789999999999999999999999 999999864 6665431 11 011 22445777888888888899888
Q ss_pred eceEece--------EEEeccc-ccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 91 ~~~~v~~--------~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
.++.+.. .+...+. ...||+||+|||+ .++.|++||.+ ..++++... . . . ....
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~-~~r~~~ipG~~~~~~~~v~~~~~-~---~-~--------~~~~ 350 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA-RWRNMNVPGEDEYRNKGVAYCPH-C---D-G--------PLFK 350 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC-CcCCCCCCCHHHhcCceEEEeec-c---C-c--------hhcC
Confidence 7765422 2222233 3479999999999 67888888863 223332211 0 0 0 1226
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|++|+|+|..|.. ..++|+++.+.+.... .+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~---------------------~~~~Vtlv~~~~~l~~---~~---------------- 390 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAG---------------------IVKHVTVLEFAPELKA---DQ---------------- 390 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------cCCEEEEEEECccccc---cH----------------
Confidence 8999999999999999999985 3479999988764210 00
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
. +.+.+. ...||+++++..+.++. . +++.+..+++.+..
T Consensus 391 -----------------~----l~~~l~------------~~~gI~i~~~~~v~~i~--~-~~g~v~~v~~~~~~----- 429 (517)
T PRK15317 391 -----------------V----LQDKLR------------SLPNVTIITNAQTTEVT--G-DGDKVTGLTYKDRT----- 429 (517)
T ss_pred -----------------H----HHHHHh------------cCCCcEEEECcEEEEEE--c-CCCcEEEEEEEECC-----
Confidence 0 011111 03589999999999997 4 34667777765421
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchh
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~ 398 (415)
+++.++++||.|+|++|++|+. .|.... +.++++|++.+|++ ++|++|||||+|||+..+.+.+.
T Consensus 430 --------~g~~~~i~~D~v~~~~G~~p~~----~~l~~~-v~~~~~g~i~vd~~--l~Ts~p~IyAaGDv~~~~~k~~~ 494 (517)
T PRK15317 430 --------TGEEHHLELEGVFVQIGLVPNT----EWLKGT-VELNRRGEIIVDAR--GATSVPGVFAAGDCTTVPYKQII 494 (517)
T ss_pred --------CCcEEEEEcCEEEEeECCccCc----hHHhhh-eeeCCCCcEEECcC--CCCCCCCEEECccccCCCCCEEE
Confidence 4555689999999999999976 343333 66777899999987 78999999999999876655455
Q ss_pred hhhhhHHHHHhhccc
Q 014990 399 TNLYCAEETVSSLSL 413 (415)
Q Consensus 399 ~a~~~g~~~a~~i~~ 413 (415)
.|+.+|..||.++..
T Consensus 495 ~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 495 IAMGEGAKAALSAFD 509 (517)
T ss_pred EhhhhHHHHHHHHHH
Confidence 899999999988754
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=259.99 Aligned_cols=284 Identities=19% Similarity=0.249 Sum_probs=189.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCc--------------------------c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP--------------------------E 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~--------------------------~ 70 (415)
..++|+||||||||++||..|++.| .+|+|||+.. +||. +..++.|.+. .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCC--CcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 5689999999999999999999999 9999999987 6664 3444434321 1
Q ss_pred hHHHHH-----------HHHHHhhccCeEEEeceEec---eEEEec----ccccccCEEEEccCCCCCCCCCCCCCCCC-
Q 014990 71 TKIVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLS----ELRQLYHVVVLAYGAESDRALGIPGEDLI- 131 (415)
Q Consensus 71 ~~~~~~-----------~~~~~~~~~~~~~~~~~~v~---~~v~~~----~~~~~~d~lvlAtG~~~~~~~~i~g~~~~- 131 (415)
..++.+ .+...++..+++++.+.... ..++.. .....||+||||||+ .|..| ||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs-~p~~~--pg~~~~~ 156 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGS-RPREL--PGIEIDG 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCC-CCCCC--CCCCCCC
Confidence 112222 23445666789988876431 122322 123589999999999 45443 454422
Q ss_pred -CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEe
Q 014990 132 -GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (415)
Q Consensus 132 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 210 (415)
.+++..+... . ...+++|+|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 157 ~~v~~~~~~~~----~---------~~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g-~~Vtli~ 202 (462)
T PRK06416 157 RVIWTSDEALN----L---------DEVPKSLVVIGGGYIGVEFASAYAS--------------------LG-AEVTIVE 202 (462)
T ss_pred CeEEcchHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEE
Confidence 2434332221 1 0146899999999999999999985 34 5799999
Q ss_pred ecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccc
Q 014990 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (415)
Q Consensus 211 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (415)
|.+.+...+ +++ +...+.+.+. +.||+++++..
T Consensus 203 ~~~~~l~~~-~~~---------------------------------~~~~l~~~l~-------------~~gV~i~~~~~ 235 (462)
T PRK06416 203 ALPRILPGE-DKE---------------------------------ISKLAERALK-------------KRGIKIKTGAK 235 (462)
T ss_pred cCCCcCCcC-CHH---------------------------------HHHHHHHHHH-------------HcCCEEEeCCE
Confidence 886542111 111 1112222222 56899999999
Q ss_pred cccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceee
Q 014990 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (415)
Q Consensus 291 ~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v 370 (415)
+.++. . +++.+ .+.+.+ .++.+++++|.||+|+|.+|+.. .+. .+..++.++ +|++.+
T Consensus 236 V~~i~--~-~~~~v-~v~~~~---------------gg~~~~i~~D~vi~a~G~~p~~~-~l~-l~~~gl~~~-~g~i~v 293 (462)
T PRK06416 236 AKKVE--Q-TDDGV-TVTLED---------------GGKEETLEADYVLVAVGRRPNTE-NLG-LEELGVKTD-RGFIEV 293 (462)
T ss_pred EEEEE--E-eCCEE-EEEEEe---------------CCeeEEEEeCEEEEeeCCccCCC-CCC-chhcCCeec-CCEEeE
Confidence 98886 3 22222 222211 23335799999999999999761 111 245677777 899999
Q ss_pred ccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 371 ~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 294 d~~--~~t~~~~VyAiGD~~~~~~-~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 294 DEQ--LRTNVPNIYAIGDIVGGPM-LAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCC--CccCCCCEEEeeecCCCcc-hHHHHHHHHHHHHHHHcC
Confidence 987 7899999999999986544 455799999999999864
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=266.86 Aligned_cols=282 Identities=20% Similarity=0.228 Sum_probs=192.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC-C---CCCCc--chHHHHHHHHHHhhccCeEEEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-V---APDHP--ETKIVINQFSRVVQHERCSFFG 91 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~-~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 91 (415)
+.++|+||||||||++||.+|++.+ ++|+|||+. ..||.+... . .|+.. ...++.+.+.+.++..++++..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g--~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence 4689999999999999999999998 999999996 466654321 1 12221 2346677777778878888764
Q ss_pred ceEece-------EEEecccccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCCCCe
Q 014990 92 NVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (415)
Q Consensus 92 ~~~v~~-------~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 161 (415)
...... .+...+....|++||||||+ .++.|++||.+ ..+++++... .. ....+++
T Consensus 80 ~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa-~p~~~~ipG~~~~~~~~v~~~~~~----~~---------~~~~g~~ 145 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTARGDYKTLAVLIATGA-SPRKLGFPGEEEFTGRGVAYCATC----DG---------EFFTGMD 145 (555)
T ss_pred cEEEEEEecCCEEEEEecCCEEEEeEEEECCCC-ccCCCCCCCHHHhCCceEEEEeec----Ch---------hhcCCCE
Confidence 333221 22233334578899999999 68888999864 2333332110 00 1226899
Q ss_pred EEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccc
Q 014990 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (415)
Q Consensus 162 V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (415)
|+|||+|++|+|+|..|.+ . ..+|+++.|++.+.. ...
T Consensus 146 VvVIGgG~~g~E~A~~L~~--------------------~-g~~Vtli~~~~~~~~---~~~------------------ 183 (555)
T TIGR03143 146 VFVIGGGFAAAEEAVFLTR--------------------Y-ASKVTVIVREPDFTC---AKL------------------ 183 (555)
T ss_pred EEEECCCHHHHHHHHHHHc--------------------c-CCEEEEEEeCCcccc---CHH------------------
Confidence 9999999999999999985 3 468999999864210 000
Q ss_pred cCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCc
Q 014990 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (415)
Q Consensus 242 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~ 321 (415)
..+.+. ...||+++++..+.++. . ++.+..+.+.+.
T Consensus 184 -------------------~~~~~~------------~~~gV~i~~~~~V~~i~--~--~~~v~~v~~~~~--------- 219 (555)
T TIGR03143 184 -------------------IAEKVK------------NHPKIEVKFNTELKEAT--G--DDGLRYAKFVNN--------- 219 (555)
T ss_pred -------------------HHHHHH------------hCCCcEEEeCCEEEEEE--c--CCcEEEEEEEEC---------
Confidence 001110 04589999999998886 3 444544444321
Q ss_pred ceeccCCceEEE--ecCe----eEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccC-Cc
Q 014990 322 QYAVGTGEFEDL--DCGM----VLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PT 394 (415)
Q Consensus 322 ~~~~~~g~~~~i--~~D~----vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~-~~ 394 (415)
.+|+..++ +||. |+|++|++|+. .+... ++.++++|++.+|++ ++|++|||||+|||+.. +.
T Consensus 220 ----~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~----~l~~~-~l~l~~~G~I~vd~~--~~Ts~p~IyAaGDv~~~~~~ 288 (555)
T TIGR03143 220 ----VTGEITEYKAPKDAGTFGVFVFVGYAPSS----ELFKG-VVELDKRGYIPTNED--METNVPGVYAAGDLRPKELR 288 (555)
T ss_pred ----CCCCEEEEeccccccceEEEEEeCCCCCh----hHHhh-hcccCCCCeEEeCCc--cccCCCCEEEceeccCCCcc
Confidence 13443343 4776 99999999976 23332 466777899999987 88999999999999743 33
Q ss_pred cchhhhhhhHHHHHhhcccc
Q 014990 395 GIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 395 ~~~~~a~~~g~~~a~~i~~~ 414 (415)
.+ ..|+.||+.||.+|.+.
T Consensus 289 ~v-~~A~~~G~~Aa~~i~~~ 307 (555)
T TIGR03143 289 QV-VTAVADGAIAATSAERY 307 (555)
T ss_pred hh-eeHHhhHHHHHHHHHHH
Confidence 34 37999999999998753
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=255.33 Aligned_cols=285 Identities=16% Similarity=0.197 Sum_probs=190.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CCccc-cCCCCCCcchHHHHH-HHHHHhhccCeEEEeceEec
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVR-SGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~ 96 (415)
++|||||||+||+++|..|++.+++.+|+||++.+.. +..+. .........+.++.. ...+..++.+++++.+..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 5899999999999999999998888999999987742 21111 111122223334333 24455667789988776542
Q ss_pred ------eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 014990 97 ------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVILGQG 168 (415)
Q Consensus 97 ------~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~VVG~G 168 (415)
+.+..+.....||+||||||+ .++.|++||.+. +++...+.. .+... +..+++|+|||+|
T Consensus 83 ~id~~~~~v~~~~~~~~yd~LVlATG~-~~~~p~i~G~~~--v~~~~~~~~~~~~~~~---------~~~~~~vvViGgG 150 (377)
T PRK04965 83 DIDAEAQVVKSQGNQWQYDKLVLATGA-SAFVPPIPGREL--MLTLNSQQEYRAAETQ---------LRDAQRVLVVGGG 150 (377)
T ss_pred EEECCCCEEEECCeEEeCCEEEECCCC-CCCCCCCCCCce--EEEECCHHHHHHHHHH---------hhcCCeEEEECCC
Confidence 224444345689999999999 678889999754 444322221 11111 2257899999999
Q ss_pred hhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCc
Q 014990 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (415)
Q Consensus 169 ~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 248 (415)
.+|+|+|..|.+ ...+|+++.+.+.+...+.++
T Consensus 151 ~~g~e~A~~L~~---------------------~g~~Vtlv~~~~~~l~~~~~~-------------------------- 183 (377)
T PRK04965 151 LIGTELAMDLCR---------------------AGKAVTLVDNAASLLASLMPP-------------------------- 183 (377)
T ss_pred HHHHHHHHHHHh---------------------cCCeEEEEecCCcccchhCCH--------------------------
Confidence 999999999986 235899999886542211111
Q ss_pred HHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCC
Q 014990 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (415)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g 328 (415)
.....+.+.+. +.|++++++..+.++. . ++....+.+. +|
T Consensus 184 -------~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~--~--~~~~~~v~~~----------------~g 223 (377)
T PRK04965 184 -------EVSSRLQHRLT-------------EMGVHLLLKSQLQGLE--K--TDSGIRATLD----------------SG 223 (377)
T ss_pred -------HHHHHHHHHHH-------------hCCCEEEECCeEEEEE--c--cCCEEEEEEc----------------CC
Confidence 11222223332 5689999998888886 3 2221123221 22
Q ss_pred ceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc---cchhhhhhhHH
Q 014990 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---GIIATNLYCAE 405 (415)
Q Consensus 329 ~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---~~~~~a~~~g~ 405 (415)
++++||.||+|+|++|+. .+....|+..+ +| +.+|++ ++|+.|||||+|||+..+. .....|+.||+
T Consensus 224 --~~i~~D~vI~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~ 293 (377)
T PRK04965 224 --RSIEVDAVIAAAGLRPNT----ALARRAGLAVN-RG-IVVDSY--LQTSAPDIYALGDCAEINGQVLPFLQPIQLSAM 293 (377)
T ss_pred --cEEECCEEEECcCCCcch----HHHHHCCCCcC-CC-EEECCC--cccCCCCEEEeeecEeECCceeehHHHHHHHHH
Confidence 379999999999999975 34455566665 46 788886 8899999999999985322 23446899999
Q ss_pred HHHhhccc
Q 014990 406 ETVSSLSL 413 (415)
Q Consensus 406 ~~a~~i~~ 413 (415)
.+|.||..
T Consensus 294 ~~a~n~~g 301 (377)
T PRK04965 294 ALAKNLLG 301 (377)
T ss_pred HHHHHhcC
Confidence 99999864
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-30 Score=258.08 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=192.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC-CCCcc-ccCCCCCCcc---------hH-------HHHHHH-
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLV-RSGVAPDHPE---------TK-------IVINQF- 78 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~-~gg~~-~~~~~~~~~~---------~~-------~~~~~~- 78 (415)
+.++|+||||||||++||.+|++.+ .+|+|||+.+. .||.. ..++.|.+.. .. .+...+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999 99999999864 56643 3444444221 11 111111
Q ss_pred ----HHHhhccCeEEEeceEec-----eEEEeccc--ccccCEEEEccCCCCCCCCCCCCCC-CCCeeechhhHHHhcCC
Q 014990 79 ----SRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGH 146 (415)
Q Consensus 79 ----~~~~~~~~~~~~~~~~v~-----~~v~~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~-~~~v~~~~~~~~~~~~~ 146 (415)
..+.+..+++++.+.... ..+...+. ...||+||||||+ .|..|++||.+ .++++++.++.. .
T Consensus 80 ~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs-~p~~p~i~G~~~~~~v~~~~~~~~----~ 154 (441)
T PRK08010 80 NKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGA-QTVVPPIPGITTTPGVYDSTGLLN----L 154 (441)
T ss_pred HhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCC-cCCCCCCCCccCCCCEEChhHhhc----c
Confidence 122333478877665321 12332333 3589999999999 67888999975 456666544331 1
Q ss_pred CCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHH
Q 014990 147 PDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELRE 226 (415)
Q Consensus 147 ~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~ 226 (415)
...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+...+ ++
T Consensus 155 ---------~~~~~~v~ViGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~-~~---- 199 (441)
T PRK08010 155 ---------KELPGHLGILGGGYIGVEFASMFAN--------------------FG-SKVTILEAASLFLPRE-DR---- 199 (441)
T ss_pred ---------cccCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCCCCCCCc-CH----
Confidence 1146899999999999999999986 34 5899999986542111 11
Q ss_pred HHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeee
Q 014990 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306 (415)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~ 306 (415)
. +...+.+.+. +.||+++++..+.++. . +++ .
T Consensus 200 ------------------------~-----~~~~l~~~l~-------------~~gV~v~~~~~v~~i~--~-~~~---~ 231 (441)
T PRK08010 200 ------------------------D-----IADNIATILR-------------DQGVDIILNAHVERIS--H-HEN---Q 231 (441)
T ss_pred ------------------------H-----HHHHHHHHHH-------------hCCCEEEeCCEEEEEE--E-cCC---E
Confidence 1 1111222222 6689999999888886 3 222 2
Q ss_pred EEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeee
Q 014990 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVC 386 (415)
Q Consensus 307 v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfai 386 (415)
+.+.. ++ + ++++|.|++|+|.+|+.. .+ .....++.++++|++.+|++ ++|+.|||||+
T Consensus 232 v~v~~---------------~~-g-~i~~D~vl~a~G~~pn~~-~l-~~~~~gl~~~~~G~i~vd~~--~~Ts~~~IyA~ 290 (441)
T PRK08010 232 VQVHS---------------EH-A-QLAVDALLIASGRQPATA-SL-HPENAGIAVNERGAIVVDKY--LHTTADNIWAM 290 (441)
T ss_pred EEEEE---------------cC-C-eEEeCEEEEeecCCcCCC-Cc-CchhcCcEECCCCcEEECCC--cccCCCCEEEe
Confidence 22211 11 1 488999999999999762 11 23456778888899999987 78999999999
Q ss_pred eccccCCccchhhhhhhHHHHHhhccc
Q 014990 387 GWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 387 GD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|||+..+ .....|..||+.++.+|..
T Consensus 291 GD~~~~~-~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 291 GDVTGGL-QFTYISLDDYRIVRDELLG 316 (441)
T ss_pred eecCCCc-cchhHHHHHHHHHHHHHcC
Confidence 9998644 4555799999999999863
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=260.92 Aligned_cols=286 Identities=17% Similarity=0.193 Sum_probs=191.7
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC---------CCCCCCcc-ccCCCCCCc--------------
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR---------LPTPFGLV-RSGVAPDHP-------------- 69 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~---------~~~~gg~~-~~~~~~~~~-------------- 69 (415)
++.+..++|+||||||||+++|.++++.| .+|+|||+ ...+||.. ..|+.|.+.
T Consensus 20 ~~~~~~yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~ 97 (499)
T PLN02507 20 NATHYDFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDA 97 (499)
T ss_pred cccccccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHH
Confidence 33345689999999999999999999999 99999996 24466653 223323211
Q ss_pred -------------chHHHH-----------HHHHHHhhccCeEEEeceEe--c---eEEEecccc---cccCEEEEccCC
Q 014990 70 -------------ETKIVI-----------NQFSRVVQHERCSFFGNVTL--G---SSVSLSELR---QLYHVVVLAYGA 117 (415)
Q Consensus 70 -------------~~~~~~-----------~~~~~~~~~~~~~~~~~~~v--~---~~v~~~~~~---~~~d~lvlAtG~ 117 (415)
....+. ..+..++...+++++.+... + ..++..++. ..||+||||||+
T Consensus 98 ~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs 177 (499)
T PLN02507 98 KNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGS 177 (499)
T ss_pred HhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCC
Confidence 011111 11234455578888877432 1 223333332 478999999999
Q ss_pred CCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHH
Q 014990 118 ESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197 (415)
Q Consensus 118 ~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~ 197 (415)
.|..|++||.+. ..+..+... +. ..+++|+|||+|.+|+|+|..+.+
T Consensus 178 -~p~~p~ipG~~~--~~~~~~~~~-l~------------~~~k~vvVIGgG~ig~E~A~~l~~----------------- 224 (499)
T PLN02507 178 -RAQRPNIPGKEL--AITSDEALS-LE------------ELPKRAVVLGGGYIAVEFASIWRG----------------- 224 (499)
T ss_pred -CCCCCCCCCccc--eechHHhhh-hh------------hcCCeEEEECCcHHHHHHHHHHHH-----------------
Confidence 678888998642 222222211 10 136899999999999999999885
Q ss_pred hhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCC
Q 014990 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM 277 (415)
Q Consensus 198 ~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (415)
.+ .+|+++.|.+.....+ ++++ +..+.+.+.
T Consensus 225 ---~G-~~Vtli~~~~~~l~~~-d~~~---------------------------------~~~l~~~l~----------- 255 (499)
T PLN02507 225 ---MG-ATVDLFFRKELPLRGF-DDEM---------------------------------RAVVARNLE----------- 255 (499)
T ss_pred ---cC-CeEEEEEecCCcCccc-CHHH---------------------------------HHHHHHHHH-----------
Confidence 33 5899999886432211 1111 112222232
Q ss_pred CCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCC
Q 014990 278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH 357 (415)
Q Consensus 278 ~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~ 357 (415)
+.||+++++..+.++. . .++.+ .+.+ ++++++++|.||+++|++|+. ..+ ....
T Consensus 256 --~~GI~i~~~~~V~~i~--~-~~~~~-~v~~------------------~~g~~i~~D~vl~a~G~~pn~-~~l-~l~~ 309 (499)
T PLN02507 256 --GRGINLHPRTNLTQLT--K-TEGGI-KVIT------------------DHGEEFVADVVLFATGRAPNT-KRL-NLEA 309 (499)
T ss_pred --hCCCEEEeCCEEEEEE--E-eCCeE-EEEE------------------CCCcEEEcCEEEEeecCCCCC-CCC-Cchh
Confidence 5689999999888886 3 22322 1221 122379999999999999976 211 1345
Q ss_pred CCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 358 KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 358 ~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
.++.++++|++.+|++ ++|++|||||+|||+..+. +...|++||+.+|.+|.
T Consensus 310 ~gl~~~~~G~I~Vd~~--~~Ts~p~IyAiGDv~~~~~-l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 310 VGVELDKAGAVKVDEY--SRTNIPSIWAIGDVTNRIN-LTPVALMEGTCFAKTVF 361 (499)
T ss_pred hCcEECCCCcEecCCC--CcCCCCCEEEeeEcCCCCc-cHHHHHHHHHHHHHHHc
Confidence 6788888899999987 7899999999999986444 55689999999999986
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=255.58 Aligned_cols=283 Identities=16% Similarity=0.203 Sum_probs=193.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC-CCCc-cccCCCCCCcc---------hHHHHH----------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGL-VRSGVAPDHPE---------TKIVIN---------- 76 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~-~gg~-~~~~~~~~~~~---------~~~~~~---------- 76 (415)
..++|+||||||||++||..|++.| .+|+|||+.+. +||. ...++.|.+.. ..++..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g--~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAG--KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLR 79 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCC--CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999 99999999874 4663 44454454431 111111
Q ss_pred -HHHHHhhccCeEEEeceEe---ceEEEecc----cccccCEEEEccCCCCCCCCCCCCCC-CCCeeechhhHHHhcCCC
Q 014990 77 -QFSRVVQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHP 147 (415)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~v---~~~v~~~~----~~~~~d~lvlAtG~~~~~~~~i~g~~-~~~v~~~~~~~~~~~~~~ 147 (415)
...+.+...+++++.+... .+.+.... ....||+||||||+ .|+.|++||.+ .++++++.++...
T Consensus 80 ~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs-~~~~p~i~G~~~~~~v~~~~~~~~~----- 153 (438)
T PRK07251 80 GKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGA-VSNVLPIPGLADSKHVYDSTGIQSL----- 153 (438)
T ss_pred HHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCC-CCCCCCCCCcCCCCcEEchHHHhcc-----
Confidence 1223455668888776542 22333321 23589999999999 68888999974 5567666544321
Q ss_pred CCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHH
Q 014990 148 DGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227 (415)
Q Consensus 148 ~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~ 227 (415)
...+++|+|||+|.+|+|+|..+.+ .+ .+|+++.|++.+...+ .++
T Consensus 154 --------~~~~~~vvIIGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~-~~~---- 199 (438)
T PRK07251 154 --------ETLPERLGIIGGGNIGLEFAGLYNK--------------------LG-SKVTVLDAASTILPRE-EPS---- 199 (438)
T ss_pred --------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCccCCCC-CHH----
Confidence 1146899999999999999999985 34 5799999986542111 111
Q ss_pred HcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeE
Q 014990 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v 307 (415)
.+....+.+. +.||+++++..+.++. . +++. +
T Consensus 200 -----------------------------~~~~~~~~l~-------------~~GI~i~~~~~V~~i~--~-~~~~---v 231 (438)
T PRK07251 200 -----------------------------VAALAKQYME-------------EDGITFLLNAHTTEVK--N-DGDQ---V 231 (438)
T ss_pred -----------------------------HHHHHHHHHH-------------HcCCEEEcCCEEEEEE--e-cCCE---E
Confidence 1111222222 5689999998888886 3 2222 2
Q ss_pred EEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeee
Q 014990 308 HFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCG 387 (415)
Q Consensus 308 ~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiG 387 (415)
.... ++ +++++|.||+|+|++|+. ..+.+ ...++..+++|.+.+|++ ++|+.|||||+|
T Consensus 232 ~v~~---------------~g--~~i~~D~viva~G~~p~~-~~l~l-~~~~~~~~~~g~i~vd~~--~~t~~~~IyaiG 290 (438)
T PRK07251 232 LVVT---------------ED--ETYRFDALLYATGRKPNT-EPLGL-ENTDIELTERGAIKVDDY--CQTSVPGVFAVG 290 (438)
T ss_pred EEEE---------------CC--eEEEcCEEEEeeCCCCCc-ccCCc-hhcCcEECCCCcEEECCC--cccCCCCEEEee
Confidence 2211 22 379999999999999975 22222 334666777899999986 889999999999
Q ss_pred ccccCCccchhhhhhhHHHHHhhcc
Q 014990 388 WLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 388 D~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
||+.++. ....|..+|+.++.++.
T Consensus 291 D~~~~~~-~~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 291 DVNGGPQ-FTYISLDDFRIVFGYLT 314 (438)
T ss_pred ecCCCcc-cHhHHHHHHHHHHHHHc
Confidence 9986544 34468999999988775
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=274.39 Aligned_cols=291 Identities=14% Similarity=0.141 Sum_probs=199.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCCCC-Ccc-ccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPF-GLV-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~~g-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
+++|||||+|+||+++|..|+++. ++++|+||++++.++ ... ....... ....++.......++..+++++.+..
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcCCE
Confidence 458999999999999999998764 358999999998753 111 0001111 12233333334556667899988764
Q ss_pred ec------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeech--hhHHHhcCCCCCCCCCCCCCCCCeEEEE
Q 014990 95 LG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR--EFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (415)
Q Consensus 95 v~------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~k~V~VV 165 (415)
+. +.+...++ ...||+||||||+ .|+.|++||.+.++++... +....+... ...+++++||
T Consensus 82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs-~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~---------~~~~k~vvVI 151 (847)
T PRK14989 82 AITINRQEKVIHSSAGRTVFYDKLIMATGS-YPWIPPIKGSETQDCFVYRTIEDLNAIEAC---------ARRSKRGAVV 151 (847)
T ss_pred EEEEeCCCcEEEECCCcEEECCEEEECCCC-CcCCCCCCCCCCCCeEEECCHHHHHHHHHH---------HhcCCeEEEE
Confidence 42 23444444 3589999999999 7888899998877765432 222222111 1257899999
Q ss_pred cCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCC
Q 014990 166 GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS 245 (415)
Q Consensus 166 G~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (415)
|+|.+|+|+|..|.+ .+ .+|+++.+.+.+.....+++.
T Consensus 152 GgG~iGlE~A~~L~~--------------------~G-~~VtvVe~~~~ll~~~ld~~~--------------------- 189 (847)
T PRK14989 152 GGGLLGLEAAGALKN--------------------LG-VETHVIEFAPMLMAEQLDQMG--------------------- 189 (847)
T ss_pred CCCHHHHHHHHHHHH--------------------cC-CeEEEEeccccchhhhcCHHH---------------------
Confidence 999999999999986 34 479999887654221111111
Q ss_pred CCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceec
Q 014990 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (415)
Q Consensus 246 p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~ 325 (415)
...+.+.+. +.||+++++..+.++. .+..+....+.+.
T Consensus 190 ------------~~~l~~~L~-------------~~GV~v~~~~~v~~I~--~~~~~~~~~v~~~--------------- 227 (847)
T PRK14989 190 ------------GEQLRRKIE-------------SMGVRVHTSKNTLEIV--QEGVEARKTMRFA--------------- 227 (847)
T ss_pred ------------HHHHHHHHH-------------HCCCEEEcCCeEEEEE--ecCCCceEEEEEC---------------
Confidence 112222332 6689999999988886 3112223333332
Q ss_pred cCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---ccchhhhhh
Q 014990 326 GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLY 402 (415)
Q Consensus 326 ~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~---~~~~~~a~~ 402 (415)
+| +++++|+||||+|++|+. .+....|+.++++|.+.||++ ++|+.|||||+|||+... .+....|..
T Consensus 228 -dG--~~i~~D~Vv~A~G~rPn~----~L~~~~Gl~~~~~G~I~VD~~--l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~ 298 (847)
T PRK14989 228 -DG--SELEVDFIVFSTGIRPQD----KLATQCGLAVAPRGGIVINDS--CQTSDPDIYAIGECASWNNRVFGLVAPGYK 298 (847)
T ss_pred -CC--CEEEcCEEEECCCcccCc----hHHhhcCccCCCCCcEEECCC--CcCCCCCEEEeecceeEcCcccccHHHHHH
Confidence 22 279999999999999976 355667888888899999987 889999999999998643 345668899
Q ss_pred hHHHHHhhccc
Q 014990 403 CAEETVSSLSL 413 (415)
Q Consensus 403 ~g~~~a~~i~~ 413 (415)
||+.||.+|..
T Consensus 299 ~a~vaa~~i~g 309 (847)
T PRK14989 299 MAQVAVDHLLG 309 (847)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=260.54 Aligned_cols=284 Identities=15% Similarity=0.164 Sum_probs=190.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC---------CCCCCc-cccCCCCCCc------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---------PTPFGL-VRSGVAPDHP------------------ 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~---------~~~gg~-~~~~~~~~~~------------------ 69 (415)
..++|+|||+||||+.||..+++.| .+|+|||+. ..+||. ...|+.|.+.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFG--ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3579999999999999999999999 999999961 234442 2222222110
Q ss_pred ---------c-----------hHHHHHHHHHHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCC
Q 014990 70 ---------E-----------TKIVINQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIP 126 (415)
Q Consensus 70 ---------~-----------~~~~~~~~~~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~ 126 (415)
. ...+...+...++..+++++.+... ...+..+.....||+||||||+ .|..|++|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs-~p~~P~Ip 234 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGG-RPFIPDIP 234 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCC-CCCCCCCC
Confidence 0 0112233455566778998876443 1234443334689999999999 77888999
Q ss_pred CCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceE
Q 014990 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (415)
Q Consensus 127 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (415)
|.+ .+.++.+... . ...+++|+|||+|.+|+|+|..|.+ .+ .+|
T Consensus 235 G~~--~v~~~~~~l~----~---------~~~~k~V~VIGgG~iGvE~A~~L~~--------------------~g-~~V 278 (558)
T PLN02546 235 GIE--HAIDSDAALD----L---------PSKPEKIAIVGGGYIALEFAGIFNG--------------------LK-SDV 278 (558)
T ss_pred Chh--hccCHHHHHh----c---------cccCCeEEEECCCHHHHHHHHHHHh--------------------cC-CeE
Confidence 864 2333333221 1 1157899999999999999999985 33 589
Q ss_pred EEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEE
Q 014990 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (415)
Q Consensus 207 ~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 286 (415)
+++.|.+.+...+ ++++ +..+.+.+. ++||+++
T Consensus 279 tlv~~~~~il~~~-d~~~---------------------------------~~~l~~~L~-------------~~GV~i~ 311 (558)
T PLN02546 279 HVFIRQKKVLRGF-DEEV---------------------------------RDFVAEQMS-------------LRGIEFH 311 (558)
T ss_pred EEEEecccccccc-CHHH---------------------------------HHHHHHHHH-------------HCCcEEE
Confidence 9999886542211 1111 111222222 5689999
Q ss_pred eccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCC
Q 014990 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (415)
Q Consensus 287 ~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G 366 (415)
++..+.++. ..+++.+ .+. .++++..++|.|||++|++|+.. .+ ..+..++.++++|
T Consensus 312 ~~~~v~~i~--~~~~g~v-~v~------------------~~~g~~~~~D~Viva~G~~Pnt~-~L-~le~~gl~~d~~G 368 (558)
T PLN02546 312 TEESPQAII--KSADGSL-SLK------------------TNKGTVEGFSHVMFATGRKPNTK-NL-GLEEVGVKMDKNG 368 (558)
T ss_pred eCCEEEEEE--EcCCCEE-EEE------------------ECCeEEEecCEEEEeeccccCCC-cC-ChhhcCCcCCCCC
Confidence 999888886 3112222 121 11223456899999999999761 11 1245678888889
Q ss_pred ceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 367 ~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++.+|++ ++|++|||||+|||+..+. ....|++||+.+|.+|..
T Consensus 369 ~I~VD~~--l~Ts~p~IYAaGDv~~~~~-l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 369 AIEVDEY--SRTSVPSIWAVGDVTDRIN-LTPVALMEGGALAKTLFG 412 (558)
T ss_pred cEeECCC--ceeCCCCEEEeeccCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 9999987 7899999999999986554 455899999999999864
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=256.77 Aligned_cols=303 Identities=15% Similarity=0.120 Sum_probs=193.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+++|||||||+||+++|..|.+.. .+|+|||+++++.-. +.+....+...++++...+...++..+++++.+...
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~--~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~ 85 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKK--YNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVY 85 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCC--CeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEE
Confidence 46789999999999999999997655 899999998764321 111222333345566667777777778888776554
Q ss_pred ce-----EEEe----------ccc-ccccCEEEEccCCCCCCCCCCCCCCC-----CCeeechhhHHHhcCC---CCCCC
Q 014990 96 GS-----SVSL----------SEL-RQLYHVVVLAYGAESDRALGIPGEDL-----IGVHSAREFVWWYNGH---PDGKN 151 (415)
Q Consensus 96 ~~-----~v~~----------~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~-----~~v~~~~~~~~~~~~~---~~~~~ 151 (415)
.. .+.+ .++ ...||+||||||+ .+..+++||... ..+.++..+...+... .+...
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs-~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 164 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA-RPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPT 164 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCc-ccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 22 2433 222 3589999999999 677778998642 1122222222221110 00000
Q ss_pred CCC-CCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhc-----CCcceEEEEeecCcccCCCCHHHHH
Q 014990 152 LSP-DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG-----SSIRKVYLVGRRGPVQAACTAKELR 225 (415)
Q Consensus 152 ~~~-~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~r~~~~~~~~~~~~l~ 225 (415)
... .....++|+|||+|++|+|+|.+|.+.. -...++ ....+|+++++++.+...+.
T Consensus 165 ~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~------------~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~----- 227 (424)
T PTZ00318 165 TSVEERKRLLHFVVVGGGPTGVEFAAELADFF------------RDDVRNLNPELVEECKVTVLEAGSEVLGSFD----- 227 (424)
T ss_pred CChHHHhccCEEEEECCCHHHHHHHHHHHHHH------------HHHHHhhhhcccccCEEEEEcCCCcccccCC-----
Confidence 000 0012358999999999999999997410 000000 01357999998865422111
Q ss_pred HHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCee
Q 014990 226 EILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVS 305 (415)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~ 305 (415)
+.+++...+.|. +.||+++++..+.++. . +
T Consensus 228 -----------------------------~~~~~~~~~~L~-------------~~gV~v~~~~~v~~v~--~--~---- 257 (424)
T PTZ00318 228 -----------------------------QALRKYGQRRLR-------------RLGVDIRTKTAVKEVL--D--K---- 257 (424)
T ss_pred -----------------------------HHHHHHHHHHHH-------------HCCCEEEeCCeEEEEe--C--C----
Confidence 112222333332 6789999998888885 2 2
Q ss_pred eEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeee
Q 014990 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYV 385 (415)
Q Consensus 306 ~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfa 385 (415)
.+.+. +| +++++|++||++|.+|++ +....++..+++|++.+|+++ ..+++|||||
T Consensus 258 ~v~~~----------------~g--~~i~~d~vi~~~G~~~~~-----~~~~~~l~~~~~G~I~Vd~~l-~~~~~~~IfA 313 (424)
T PTZ00318 258 EVVLK----------------DG--EVIPTGLVVWSTGVGPGP-----LTKQLKVDKTSRGRISVDDHL-RVKPIPNVFA 313 (424)
T ss_pred EEEEC----------------CC--CEEEccEEEEccCCCCcc-----hhhhcCCcccCCCcEEeCCCc-ccCCCCCEEE
Confidence 23332 22 279999999999999965 334556777888999999973 3479999999
Q ss_pred eeccccCC----ccchhhhhhhHHHHHhhccc
Q 014990 386 CGWLKRGP----TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 386 iGD~~~~~----~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|||+..+ ......|+.||+.+|.+|..
T Consensus 314 iGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 314 LGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred EeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 99998531 22344799999999999975
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=256.62 Aligned_cols=283 Identities=12% Similarity=0.187 Sum_probs=188.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCc-------------------------ch
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP-------------------------ET 71 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~-------------------------~~ 71 (415)
..++|+||||||||++||..+++.| .+|+|||+.. +|| ....|+.|.+. ..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G--~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNK--AKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 5779999999999999999999999 9999999874 555 34444433321 00
Q ss_pred H-------HH----HHHHHHHhhccCeEEEeceEe--c-eEEE----------------------------eccc-cccc
Q 014990 72 K-------IV----INQFSRVVQHERCSFFGNVTL--G-SSVS----------------------------LSEL-RQLY 108 (415)
Q Consensus 72 ~-------~~----~~~~~~~~~~~~~~~~~~~~v--~-~~v~----------------------------~~~~-~~~~ 108 (415)
. ++ ...+...++..+++++.+... . .++. .+++ ...|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~a 203 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEG 203 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEEC
Confidence 1 11 112334456678888877642 1 1111 1222 3589
Q ss_pred CEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCccccccc
Q 014990 109 HVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATT 188 (415)
Q Consensus 109 d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~ 188 (415)
|+||||||+ .|+.|++||.+ .++++.++.. +..+++|+|||+|.+|+|+|..+.+
T Consensus 204 d~lVIATGS-~P~~P~IpG~~--~v~ts~~~~~--------------l~~pk~VvIIGgG~iGlE~A~~l~~-------- 258 (561)
T PTZ00058 204 KNILIAVGN-KPIFPDVKGKE--FTISSDDFFK--------------IKEAKRIGIAGSGYIAVELINVVNR-------- 258 (561)
T ss_pred CEEEEecCC-CCCCCCCCCce--eEEEHHHHhh--------------ccCCCEEEEECCcHHHHHHHHHHHH--------
Confidence 999999999 78888999864 3444433321 1247999999999999999999985
Q ss_pred CchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHH
Q 014990 189 DIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKA 268 (415)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~ 268 (415)
.+ .+|+++.+++.+...+ ++++. ..+.+.+.
T Consensus 259 ------------~G-~~Vtli~~~~~il~~~-d~~i~---------------------------------~~l~~~L~-- 289 (561)
T PTZ00058 259 ------------LG-AESYIFARGNRLLRKF-DETII---------------------------------NELENDMK-- 289 (561)
T ss_pred ------------cC-CcEEEEEecccccccC-CHHHH---------------------------------HHHHHHHH--
Confidence 34 5899999987543221 11111 11222222
Q ss_pred HhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCcc
Q 014990 269 AASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (415)
Q Consensus 269 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~ 348 (415)
+.||+++++..+.++. .++++.+. +.+ .+.++++++|.|++|+|++|+.
T Consensus 290 -----------~~GV~i~~~~~V~~I~--~~~~~~v~-v~~-----------------~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 290 -----------KNNINIITHANVEEIE--KVKEKNLT-IYL-----------------SDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred -----------HCCCEEEeCCEEEEEE--ecCCCcEE-EEE-----------------CCCCEEEECCEEEECcCCCCCc
Confidence 5689999999888886 31122221 111 1222479999999999999975
Q ss_pred CCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccC---------------------------------Ccc
Q 014990 349 VNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---------------------------------PTG 395 (415)
Q Consensus 349 ~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~---------------------------------~~~ 395 (415)
..+.. ...++ .+++|.+.+|++ ++|+.|||||+|||+.. ...
T Consensus 339 -~~L~l-~~~~~-~~~~G~I~VDe~--lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 413 (561)
T PTZ00058 339 -EDLNL-KALNI-KTPKGYIKVDDN--QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQ 413 (561)
T ss_pred -cccCc-cccce-ecCCCeEEECcC--CccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcC
Confidence 22221 22233 345799999987 88999999999999861 234
Q ss_pred chhhhhhhHHHHHhhccc
Q 014990 396 IIATNLYCAEETVSSLSL 413 (415)
Q Consensus 396 ~~~~a~~~g~~~a~~i~~ 413 (415)
+...|.+||+.+|.+|..
T Consensus 414 la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 414 LTPVAINAGRLLADRLFG 431 (561)
T ss_pred chHHHHHHHHHHHHHHhC
Confidence 455899999999999864
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=257.97 Aligned_cols=282 Identities=15% Similarity=0.203 Sum_probs=183.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCC----c-chHHHHHH-HHHHhhccCeEEEec
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH----P-ETKIVINQ-FSRVVQHERCSFFGN 92 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~----~-~~~~~~~~-~~~~~~~~~~~~~~~ 92 (415)
+++|||||||+||++||..|++.+++.+|+|||+++.++ +...++ |.. . ...+.... ...+.++.+++++.+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 78 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-FANCAL-PYYIGEVVEDRKYALAYTPEKFYDRKQITVKTY 78 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCc-chhhcCccCCHHHcccCCHHHHHHhCCCEEEeC
Confidence 358999999999999999999987779999999998654 221111 111 1 11111111 123335568888765
Q ss_pred eEec------eEEEeccc------ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCC
Q 014990 93 VTLG------SSVSLSEL------RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 93 ~~v~------~~v~~~~~------~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~ 158 (415)
..+. +.+.+.+. ...||+||||||+ .|+.|++++ +++++...... .+..... -..
T Consensus 79 ~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs-~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~-------~~~ 147 (438)
T PRK13512 79 HEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA-SANSLGFES---DITFTLRNLEDTDAIDQFIK-------ANQ 147 (438)
T ss_pred CEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC-CCCCCCCCC---CCeEEecCHHHHHHHHHHHh-------hcC
Confidence 5542 22333221 2479999999999 566656543 34443322111 1110000 014
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|.+|+|+|..|.+ .+ .+|+++.+++.+...+ +++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtli~~~~~l~~~~-d~~--------------- 190 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE--------------------RG-LHPTLIHRSDKINKLM-DAD--------------- 190 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecccccchhc-CHH---------------
Confidence 6899999999999999999986 34 5899999987542111 111
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
+...+.+.+. +.||+++++..+.++. . . .+++.
T Consensus 191 ------------------~~~~l~~~l~-------------~~gI~i~~~~~v~~i~--~--~----~v~~~-------- 223 (438)
T PRK13512 191 ------------------MNQPILDELD-------------KREIPYRLNEEIDAIN--G--N----EVTFK-------- 223 (438)
T ss_pred ------------------HHHHHHHHHH-------------hcCCEEEECCeEEEEe--C--C----EEEEC--------
Confidence 1112222222 6689999998888874 2 1 23331
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC-----
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP----- 393 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~----- 393 (415)
+| ++++||.|+||+|++|+. ++....|+.++++|++.+|++ ++|++|||||+|||+...
T Consensus 224 --------~g--~~~~~D~vl~a~G~~pn~----~~l~~~gl~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~~ 287 (438)
T PRK13512 224 --------SG--KVEHYDMIIEGVGTHPNS----KFIESSNIKLDDKGFIPVNDK--FETNVPNIYAIGDIITSHYRHVD 287 (438)
T ss_pred --------CC--CEEEeCEEEECcCCCcCh----HHHHhcCcccCCCCcEEECCC--cccCCCCEEEeeeeEEeeeccCC
Confidence 22 268999999999999976 345666788888899999987 789999999999997421
Q ss_pred ----ccchhhhhhhHHHHHhhccc
Q 014990 394 ----TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 ----~~~~~~a~~~g~~~a~~i~~ 413 (415)
..+...|.+||+.+|++|..
T Consensus 288 ~~~~~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 288 LPASVPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred CceecccchHHHHHHHHHHHHhcC
Confidence 12333588999999999864
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=253.61 Aligned_cols=281 Identities=14% Similarity=0.180 Sum_probs=187.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc--------------------------chH
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP--------------------------ETK 72 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~--------------------------~~~ 72 (415)
+++|+||||||+|.+||..+ .| .+|+|||+...-|.++..|+.|.+. ...
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--AD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CC--CeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 37999999999999998763 57 9999999875444444444444221 011
Q ss_pred HH-------HHHHH-----HH-hhccCeEEEeceEe---ceEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 014990 73 IV-------INQFS-----RV-VQHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (415)
Q Consensus 73 ~~-------~~~~~-----~~-~~~~~~~~~~~~~v---~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~ 135 (415)
++ .+.+. .. ++..+++++.+... .+.+++.++ ...||+||||||+ .|+.|++||.+...+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs-~p~~p~i~g~~~~~~~~ 155 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGS-RPVIPPVIADSGVRYHT 155 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC-CCCCCCCCCcCCccEEc
Confidence 11 11111 11 44457777776554 234555443 3589999999999 78888999876444444
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..+... +. ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+
T Consensus 156 ~~~~~~-l~------------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G-~~Vtli~~~~~l 201 (451)
T PRK07846 156 SDTIMR-LP------------ELPESLVIVGGGFIAAEFAHVFSA--------------------LG-VRVTVVNRSGRL 201 (451)
T ss_pred hHHHhh-hh------------hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCcc
Confidence 443321 11 136899999999999999999986 34 589999998754
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
... .++++ +..+.+++ +.+++++++..+.++.
T Consensus 202 l~~-~d~~~---------------------------------~~~l~~l~--------------~~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 202 LRH-LDDDI---------------------------------SERFTELA--------------SKRWDVRLGRNVVGVS 233 (451)
T ss_pred ccc-cCHHH---------------------------------HHHHHHHH--------------hcCeEEEeCCEEEEEE
Confidence 211 11111 11111111 4469999998888885
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. .++.+ .+.+. +| ++++||.|++|+|++|+. ..+. .+..++.++++|++.+|++
T Consensus 234 --~-~~~~v-~v~~~----------------~g--~~i~~D~vl~a~G~~pn~-~~l~-~~~~gl~~~~~G~i~Vd~~-- 287 (451)
T PRK07846 234 --Q-DGSGV-TLRLD----------------DG--STVEADVLLVATGRVPNG-DLLD-AAAAGVDVDEDGRVVVDEY-- 287 (451)
T ss_pred --E-cCCEE-EEEEC----------------CC--cEeecCEEEEEECCccCc-cccC-chhcCceECCCCcEeECCC--
Confidence 3 22221 12221 22 379999999999999976 2111 2456788888999999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|++|||||+|||+..+ .+...|.+||+.+|+||..
T Consensus 288 ~~Ts~p~IyA~GD~~~~~-~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 288 QRTSAEGVFALGDVSSPY-QLKHVANHEARVVQHNLLH 324 (451)
T ss_pred cccCCCCEEEEeecCCCc-cChhHHHHHHHHHHHHHcC
Confidence 789999999999998643 4556799999999999863
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=255.77 Aligned_cols=286 Identities=16% Similarity=0.245 Sum_probs=185.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchH--HHHHHHH-----------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETK--IVINQFS----------------- 79 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~--~~~~~~~----------------- 79 (415)
.++|+||||||||++||.+|++.| .+|+|||+...-|.....+..|.+.... ++...+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G--~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 589999999999999999999999 9999999875444445555555432111 1111111
Q ss_pred ------------------HHhhccCeEEEeceEe---ceEEEe--ccc---ccccCEEEEccCCCCCCCCCCCCCCC-CC
Q 014990 80 ------------------RVVQHERCSFFGNVTL---GSSVSL--SEL---RQLYHVVVLAYGAESDRALGIPGEDL-IG 132 (415)
Q Consensus 80 ------------------~~~~~~~~~~~~~~~v---~~~v~~--~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~-~~ 132 (415)
..++..+++.+.+... ...+.+ .++ ...||+||||||+ .|+.| ||.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~--pg~~~~~~ 158 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGS-STRLL--PGTSLSEN 158 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCC-CCCCC--CCCCCCCc
Confidence 1112234555443221 112222 222 3589999999999 55543 55542 23
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+++..+... . -..+++|+|||+|.+|+|+|..|.+ .+ .+|+++.++
T Consensus 159 v~~~~~~~~---~----------~~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G-~~Vtlv~~~ 204 (466)
T PRK07818 159 VVTYEEQIL---S----------RELPKSIVIAGAGAIGMEFAYVLKN--------------------YG-VDVTIVEFL 204 (466)
T ss_pred EEchHHHhc---c----------ccCCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEecC
Confidence 443322110 0 0146899999999999999999986 34 479999987
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+. |....+ +...+.+.+. ++||+++++..+.
T Consensus 205 ~~~l-----------------------------~~~d~~-----~~~~l~~~l~-------------~~gV~i~~~~~v~ 237 (466)
T PRK07818 205 DRAL-----------------------------PNEDAE-----VSKEIAKQYK-------------KLGVKILTGTKVE 237 (466)
T ss_pred CCcC-----------------------------CccCHH-----HHHHHHHHHH-------------HCCCEEEECCEEE
Confidence 6542 211111 1122223332 5689999999998
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . ++....+.+.. .+|+.+++++|.||||+|++|+. ..+ .....|+.++++|.+.+|+
T Consensus 238 ~i~--~--~~~~~~v~~~~--------------~~g~~~~i~~D~vi~a~G~~pn~-~~l-~l~~~g~~~~~~g~i~vd~ 297 (466)
T PRK07818 238 SID--D--NGSKVTVTVSK--------------KDGKAQELEADKVLQAIGFAPRV-EGY-GLEKTGVALTDRGAIAIDD 297 (466)
T ss_pred EEE--E--eCCeEEEEEEe--------------cCCCeEEEEeCEEEECcCcccCC-CCC-CchhcCcEECCCCcEeeCC
Confidence 886 3 33222233321 03444579999999999999975 211 1245677788889999998
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 298 ~--~~Ts~p~IyAiGD~~~~~~-l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 298 Y--MRTNVPHIYAIGDVTAKLQ-LAHVAEAQGVVAAETIAG 335 (466)
T ss_pred C--cccCCCCEEEEeecCCCcc-cHhHHHHHHHHHHHHHcC
Confidence 7 8899999999999986444 555799999999999864
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=253.98 Aligned_cols=287 Identities=20% Similarity=0.255 Sum_probs=190.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCC--------CCCCCc-cccCCCCCCc------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRL--------PTPFGL-VRSGVAPDHP------------------ 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~--------~~~gg~-~~~~~~~~~~------------------ 69 (415)
+.++|+||||||||+.||..+++. | .+|+|||+. ..+||. +..|+.|.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g--~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYK--KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcC--CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 568999999999999999999997 8 999999973 456663 3333333211
Q ss_pred ----------chHHHH-----------HHHHHHhhc-cCeEEEeceEe---ceEEEecc---------cccccCEEEEcc
Q 014990 70 ----------ETKIVI-----------NQFSRVVQH-ERCSFFGNVTL---GSSVSLSE---------LRQLYHVVVLAY 115 (415)
Q Consensus 70 ----------~~~~~~-----------~~~~~~~~~-~~~~~~~~~~v---~~~v~~~~---------~~~~~d~lvlAt 115 (415)
..+.+. ......++. .+++++.+... ...+.+.. ....||+|||||
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 011111 112334444 47888877653 12233321 135899999999
Q ss_pred CCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHH
Q 014990 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195 (415)
Q Consensus 116 G~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~ 195 (415)
|+ .|..|++||.+. +.+..+... . ...+++|+|||+|++|+|+|..+..
T Consensus 160 Gs-~p~~p~i~G~~~--~~~~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~~~~--------------- 208 (486)
T TIGR01423 160 GS-WPQMLGIPGIEH--CISSNEAFY----L---------DEPPRRVLTVGGGFISVEFAGIFNA--------------- 208 (486)
T ss_pred CC-CCCCCCCCChhh--eechhhhhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH---------------
Confidence 99 678889998652 333322211 0 0147899999999999999987753
Q ss_pred HHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCC
Q 014990 196 TALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQ 275 (415)
Q Consensus 196 ~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (415)
+... ..+|+++.+.+.+...+ ++++ .+.+.+.|.
T Consensus 209 --l~~~-G~~Vtli~~~~~il~~~-d~~~---------------------------------~~~l~~~L~--------- 242 (486)
T TIGR01423 209 --YKPR-GGKVTLCYRNNMILRGF-DSTL---------------------------------RKELTKQLR--------- 242 (486)
T ss_pred --hccC-CCeEEEEecCCcccccc-CHHH---------------------------------HHHHHHHHH---------
Confidence 0011 35899999987653221 1111 112222332
Q ss_pred CCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCccc
Q 014990 276 PMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFD 355 (415)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~ 355 (415)
++||+++++..+.++. . .++....+.+. ++ .++++|.||||+|++|+. ..+ ..
T Consensus 243 ----~~GI~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g--~~i~~D~vl~a~G~~Pn~-~~l-~l 295 (486)
T TIGR01423 243 ----ANGINIMTNENPAKVT--L-NADGSKHVTFE----------------SG--KTLDVDVVMMAIGRVPRT-QTL-QL 295 (486)
T ss_pred ----HcCCEEEcCCEEEEEE--E-cCCceEEEEEc----------------CC--CEEEcCEEEEeeCCCcCc-ccC-Cc
Confidence 5689999999888886 3 22222233321 22 279999999999999976 211 12
Q ss_pred CCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 356 ~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+..++.++++|.+.+|++ ++|+.|||||+|||+..+. ....|++||+.+|.+|..
T Consensus 296 ~~~gl~~~~~G~I~Vd~~--l~Ts~~~IyA~GDv~~~~~-l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 296 DKVGVELTKKGAIQVDEF--SRTNVPNIYAIGDVTDRVM-LTPVAINEGAAFVDTVFG 350 (486)
T ss_pred hhhCceECCCCCEecCCC--CcCCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHhC
Confidence 456788888899999987 7899999999999986544 555799999999999863
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-29 Score=251.64 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=186.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCcchH------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETK------------------------ 72 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~~~~------------------------ 72 (415)
..++|+||||||||++||.++++.| .+|+|||+.+.+||. ...++.|.+....
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G--~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~ 79 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL 79 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence 3589999999999999999999999 999999987677775 3444445432111
Q ss_pred ---HHH-----------HHHHHHhhccCeEEEeceEe---ce--EEEeccc---ccccCEEEEccCCCCCCCCCCCCCCC
Q 014990 73 ---IVI-----------NQFSRVVQHERCSFFGNVTL---GS--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (415)
Q Consensus 73 ---~~~-----------~~~~~~~~~~~~~~~~~~~v---~~--~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~ 130 (415)
.+. ......++..+++++.+... .. .+...++ ...||+||||||+ .|. ++||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~--~ipg~~~ 156 (466)
T PRK06115 80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGS-EPT--PLPGVTI 156 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCC-CCC--CCCCCCC
Confidence 000 01122233446776655421 01 1222222 3589999999999 443 4566543
Q ss_pred CC--eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEE
Q 014990 131 IG--VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (415)
Q Consensus 131 ~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 208 (415)
.+ ++++.+.+. . ...+++|+|||+|.+|+|+|..+.+ .+ .+|++
T Consensus 157 ~~~~~~~~~~~~~----~---------~~~~~~vvIIGgG~ig~E~A~~l~~--------------------~G-~~Vtl 202 (466)
T PRK06115 157 DNQRIIDSTGALS----L---------PEVPKHLVVIGAGVIGLELGSVWRR--------------------LG-AQVTV 202 (466)
T ss_pred CCCeEECHHHHhC----C---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEE
Confidence 32 333333221 0 1147999999999999999999885 34 58999
Q ss_pred EeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEec
Q 014990 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (415)
Q Consensus 209 ~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 288 (415)
+.+.+.+...+. ++ ++..+.+.+. +.||+++++
T Consensus 203 ie~~~~il~~~d-~~---------------------------------~~~~l~~~l~-------------~~gV~i~~~ 235 (466)
T PRK06115 203 VEYLDRICPGTD-TE---------------------------------TAKTLQKALT-------------KQGMKFKLG 235 (466)
T ss_pred EeCCCCCCCCCC-HH---------------------------------HHHHHHHHHH-------------hcCCEEEEC
Confidence 998765422111 11 1111222222 568999999
Q ss_pred cccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCce
Q 014990 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (415)
Q Consensus 289 ~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i 368 (415)
..+.++. . .++.+ .+.+... ..++++++++|.||+++|++|+. ..+.+ +..++..+++|.
T Consensus 236 ~~V~~i~--~-~~~~v-~v~~~~~-------------~~g~~~~i~~D~vi~a~G~~pn~-~~l~~-~~~g~~~~~~G~- 295 (466)
T PRK06115 236 SKVTGAT--A-GADGV-SLTLEPA-------------AGGAAETLQADYVLVAIGRRPYT-QGLGL-ETVGLETDKRGM- 295 (466)
T ss_pred cEEEEEE--E-cCCeE-EEEEEEc-------------CCCceeEEEeCEEEEccCCcccc-ccCCc-ccccceeCCCCE-
Confidence 9998886 3 22222 2333211 02445579999999999999975 22222 345667777774
Q ss_pred eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 369 ~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.+|++ ++|+.|||||+|||+..+. +...|..||+.+|++|..
T Consensus 296 ~vd~~--~~Ts~~~IyA~GD~~~~~~-la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 296 LANDH--HRTSVPGVWVIGDVTSGPM-LAHKAEDEAVACIERIAG 337 (466)
T ss_pred EECCC--eecCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 56665 8999999999999986554 555899999999999864
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=252.00 Aligned_cols=283 Identities=17% Similarity=0.210 Sum_probs=188.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc----------------------------ch
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP----------------------------ET 71 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~----------------------------~~ 71 (415)
++|+||||||||+++|.++++.| .+|+|||+.+..|..+..++.|.+. ..
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g--~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNG--KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 48999999999999999999999 9999999986544444444333211 11
Q ss_pred HHHHH-----------HHHHHhhccCeEEEeceEe---ceE--EEeccc--ccccCEEEEccCCCCCCCCCCCCCCCCCe
Q 014990 72 KIVIN-----------QFSRVVQHERCSFFGNVTL---GSS--VSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (415)
Q Consensus 72 ~~~~~-----------~~~~~~~~~~~~~~~~~~v---~~~--v~~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~~~~v 133 (415)
..+.. .....++..+++++.+... ... ++.++. ...||+||||||+ .|+.|++++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs-~p~~~p~~~~~~~~v 157 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGS-EPTELPFAPFDGKWI 157 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCC-CCCCCCCCCCCCCeE
Confidence 11111 1223345567888766543 122 222222 3579999999999 677777877665556
Q ss_pred eechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++..+... . ...+++|+|||+|++|+|+|..+.+ .+ .+|+++.+++
T Consensus 158 ~~~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g-~~Vtli~~~~ 203 (458)
T PRK06912 158 INSKHAMS----L---------PSIPSSLLIVGGGVIGCEFASIYSR--------------------LG-TKVTIVEMAP 203 (458)
T ss_pred EcchHHhC----c---------cccCCcEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCC
Confidence 55543221 1 1146899999999999999999885 34 5799999886
Q ss_pred cccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccc
Q 014990 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (415)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 293 (415)
.+. |....+ +...+.+.+. +.||+++++..+.+
T Consensus 204 ~ll-----------------------------~~~d~e-----~~~~l~~~L~-------------~~GI~i~~~~~V~~ 236 (458)
T PRK06912 204 QLL-----------------------------PGEDED-----IAHILREKLE-------------NDGVKIFTGAALKG 236 (458)
T ss_pred CcC-----------------------------ccccHH-----HHHHHHHHHH-------------HCCCEEEECCEEEE
Confidence 542 111111 1122222332 56899999988888
Q ss_pred ccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccC
Q 014990 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (415)
Q Consensus 294 v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~ 373 (415)
+. . ++. .+.+.. +++.++++||.||+|+|.+|+. ..+. .+..++..+++| +.+|++
T Consensus 237 i~--~--~~~--~v~~~~---------------~g~~~~i~~D~vivA~G~~p~~-~~l~-l~~~gv~~~~~g-i~Vd~~ 292 (458)
T PRK06912 237 LN--S--YKK--QALFEY---------------EGSIQEVNAEFVLVSVGRKPRV-QQLN-LEKAGVQFSNKG-ISVNEH 292 (458)
T ss_pred EE--E--cCC--EEEEEE---------------CCceEEEEeCEEEEecCCccCC-CCCC-chhcCceecCCC-EEeCCC
Confidence 85 3 222 232221 2344579999999999999965 2221 244566677667 889986
Q ss_pred CCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 374 ~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||..++. ....|++||+.||.+|..
T Consensus 293 --~~ts~~~VyA~GD~~~~~~-la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 293 --MQTNVPHIYACGDVIGGIQ-LAHVAFHEGTTAALHASG 329 (458)
T ss_pred --eecCCCCEEEEeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 7899999999999986554 455799999999999863
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=251.81 Aligned_cols=284 Identities=20% Similarity=0.264 Sum_probs=186.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCC--------------------------Ccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD--------------------------HPE 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~--------------------------~~~ 70 (415)
+.++|+||||||||+++|.+|++.+ .+|+|||+ +.+||... .++.|. ...
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC--CeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 4589999999999999999999999 99999999 56666432 121111 111
Q ss_pred hHHHHHHHH------------HHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCCCCC---CCC
Q 014990 71 TKIVINQFS------------RVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIG 132 (415)
Q Consensus 71 ~~~~~~~~~------------~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~ 132 (415)
.+++..... ...+..+++++.+... ...+.++.....||+||||||+. .|++||.. ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~ 155 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR---VPPIPGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC---CCCCCCCcccCCCc
Confidence 222222221 2233345666654332 12233333345899999999994 55677763 333
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+++..+... . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|+
T Consensus 156 ~~~~~~~~~----~---------~~~~k~v~VIGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~ 201 (460)
T PRK06292 156 LLTSDDAFE----L---------DKLPKSLAVIGGGVIGLELGQALSR--------------------LG-VKVTVFERG 201 (460)
T ss_pred EECchHHhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecC
Confidence 443332221 1 1147899999999999999999986 34 579999988
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+... .++++ ...+.+.+. ++ |+++++..+.
T Consensus 202 ~~~l~~-~d~~~---------------------------------~~~~~~~l~-------------~~-I~i~~~~~v~ 233 (460)
T PRK06292 202 DRILPL-EDPEV---------------------------------SKQAQKILS-------------KE-FKIKLGAKVT 233 (460)
T ss_pred CCcCcc-hhHHH---------------------------------HHHHHHHHh-------------hc-cEEEcCCEEE
Confidence 654211 11111 111122221 55 9999998888
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . ++. ..+++.. ..++++++++|.||+++|++|+. ..+ .....++.++++|++.+|+
T Consensus 234 ~i~--~--~~~-~~v~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~-~~l-~l~~~g~~~~~~g~i~vd~ 292 (460)
T PRK06292 234 SVE--K--SGD-EKVEELE--------------KGGKTETIEADYVLVATGRRPNT-DGL-GLENTGIELDERGRPVVDE 292 (460)
T ss_pred EEE--E--cCC-ceEEEEE--------------cCCceEEEEeCEEEEccCCccCC-CCC-CcHhhCCEecCCCcEeECC
Confidence 886 3 222 2333221 03445589999999999999976 222 2245677888889999998
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 293 ~--~~ts~~~IyA~GD~~~~~~-~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 293 H--TQTSVPGIYAAGDVNGKPP-LLHEAADEGRIAAENAAG 330 (460)
T ss_pred C--cccCCCCEEEEEecCCCcc-chhHHHHHHHHHHHHhcC
Confidence 7 7899999999999986554 344799999999999875
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=251.87 Aligned_cols=284 Identities=17% Similarity=0.172 Sum_probs=191.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcch---------------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET--------------------------- 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~--------------------------- 71 (415)
.++|+|||+||+|+.+|..+++.+ .+|+|||+...-|.....++.|.+...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g--~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLG--ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 368999999999999999999999 999999988643334444444432110
Q ss_pred --HH-------H----HHHHHHHhhccCeEEEeceEec-------eE--EEeccc---ccccCEEEEccCCCCCCCCCCC
Q 014990 72 --KI-------V----INQFSRVVQHERCSFFGNVTLG-------SS--VSLSEL---RQLYHVVVLAYGAESDRALGIP 126 (415)
Q Consensus 72 --~~-------~----~~~~~~~~~~~~~~~~~~~~v~-------~~--v~~~~~---~~~~d~lvlAtG~~~~~~~~i~ 126 (415)
.. + ...+.+.++..+++++.+...- .. +...++ ...||+||||||+ .|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs-~p~~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA-SPRILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC-CCCCCCCC
Confidence 00 1 1123345566789988875432 12 322233 3589999999999 56666655
Q ss_pred CCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceE
Q 014990 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (415)
Q Consensus 127 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (415)
+.+...+++..++.. . -..+++|+|||+|.+|+|+|..|.+ .+ .+|
T Consensus 158 ~~~~~~v~~~~~~~~----~---------~~~~~~vvVIGgG~ig~E~A~~l~~--------------------~g-~~V 203 (466)
T PRK07845 158 EPDGERILTWRQLYD----L---------DELPEHLIVVGSGVTGAEFASAYTE--------------------LG-VKV 203 (466)
T ss_pred CCCCceEEeehhhhc----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeE
Confidence 544445555443321 0 0136899999999999999999985 34 589
Q ss_pred EEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEE
Q 014990 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (415)
Q Consensus 207 ~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 286 (415)
+++.+++.+...+ +. + +...+.+.|. ++||+++
T Consensus 204 tli~~~~~~l~~~-d~----------------------------~-----~~~~l~~~L~-------------~~gV~i~ 236 (466)
T PRK07845 204 TLVSSRDRVLPGE-DA----------------------------D-----AAEVLEEVFA-------------RRGMTVL 236 (466)
T ss_pred EEEEcCCcCCCCC-CH----------------------------H-----HHHHHHHHHH-------------HCCcEEE
Confidence 9999886543221 11 1 1111222222 5689999
Q ss_pred eccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCC
Q 014990 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (415)
Q Consensus 287 ~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G 366 (415)
++..+.++. . .++.+ .+.+. +| +++++|.||+++|++|+.. .+ .....++.++++|
T Consensus 237 ~~~~v~~v~--~-~~~~~-~v~~~----------------~g--~~l~~D~vl~a~G~~pn~~-~l-~l~~~gl~~~~~G 292 (466)
T PRK07845 237 KRSRAESVE--R-TGDGV-VVTLT----------------DG--RTVEGSHALMAVGSVPNTA-GL-GLEEAGVELTPSG 292 (466)
T ss_pred cCCEEEEEE--E-eCCEE-EEEEC----------------CC--cEEEecEEEEeecCCcCCC-CC-CchhhCceECCCC
Confidence 998888885 3 22322 12221 22 3799999999999999762 11 1345678888889
Q ss_pred ceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 367 ~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++.+|++ ++|++|||||+|||+..+. ....|+.||+.++.+|..
T Consensus 293 ~i~Vd~~--~~Ts~~~IyA~GD~~~~~~-l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 293 HITVDRV--SRTSVPGIYAAGDCTGVLP-LASVAAMQGRIAMYHALG 336 (466)
T ss_pred cEeECCC--cccCCCCEEEEeeccCCcc-chhHHHHHHHHHHHHHcC
Confidence 9999987 7899999999999986544 455799999999999864
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=257.46 Aligned_cols=282 Identities=18% Similarity=0.238 Sum_probs=186.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCC-------------------------c--
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDH-------------------------P-- 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~-------------------------~-- 69 (415)
..++|+||||||||+++|..|++.| .+|+|||+. .+||.. ..++.|.+ +
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 4689999999999999999999999 999999987 566642 22211110 0
Q ss_pred chHHHHHH------------HHHHhhcc-CeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCCC
Q 014990 70 ETKIVINQ------------FSRVVQHE-RCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (415)
Q Consensus 70 ~~~~~~~~------------~~~~~~~~-~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~ 128 (415)
....+... +...+... +++++.+...- ..+...++ ...||+||||||+ .|+.|++||.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGA-SPAVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCC
Confidence 11111111 11223333 67777664431 12322232 3589999999999 6888899997
Q ss_pred CCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEE
Q 014990 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (415)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 208 (415)
+...+++..+.+. . ...+++|+|||+|++|+|+|..|.+ .+ .+|++
T Consensus 253 ~~~~~~~~~~~~~---~----------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtl 298 (561)
T PRK13748 253 KETPYWTSTEALV---S----------DTIPERLAVIGSSVVALELAQAFAR--------------------LG-SKVTI 298 (561)
T ss_pred CccceEccHHHhh---c----------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 6433333322211 0 1146899999999999999999986 34 58999
Q ss_pred EeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEec
Q 014990 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (415)
Q Consensus 209 ~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 288 (415)
+.|+..+ .. .+++ +...+.+.+. +.||+++++
T Consensus 299 i~~~~~l-~~-~d~~---------------------------------~~~~l~~~l~-------------~~gI~i~~~ 330 (561)
T PRK13748 299 LARSTLF-FR-EDPA---------------------------------IGEAVTAAFR-------------AEGIEVLEH 330 (561)
T ss_pred EecCccc-cc-cCHH---------------------------------HHHHHHHHHH-------------HCCCEEEcC
Confidence 9885321 11 1111 1122223332 568999999
Q ss_pred cccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCce
Q 014990 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (415)
Q Consensus 289 ~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i 368 (415)
..+.++. . +++. +.+.. .+ + ++++|.||+|+|++|+.. .+ .....++.++++|++
T Consensus 331 ~~v~~i~--~-~~~~---~~v~~---------------~~-~-~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~g~i 385 (561)
T PRK13748 331 TQASQVA--H-VDGE---FVLTT---------------GH-G-ELRADKLLVATGRAPNTR-SL-ALDAAGVTVNAQGAI 385 (561)
T ss_pred CEEEEEE--e-cCCE---EEEEe---------------cC-C-eEEeCEEEEccCCCcCCC-Cc-CchhcCceECCCCCE
Confidence 8888875 3 2221 22211 11 1 599999999999999761 11 124567888888999
Q ss_pred eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 369 ~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.+|++ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 386 ~vd~~--~~Ts~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 386 VIDQG--MRTSVPHIYAAGDCTDQPQ-FVYVAAAAGTRAAINMTG 427 (561)
T ss_pred eECCC--cccCCCCEEEeeecCCCcc-chhHHHHHHHHHHHHHcC
Confidence 99987 8899999999999986554 444799999999999863
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=269.73 Aligned_cols=285 Identities=19% Similarity=0.225 Sum_probs=196.5
Q ss_pred EEEECCCHHHHHHHHHHHHcC-CCceEEEEcCCCCCCCc-c-ccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec--
Q 014990 22 VCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGL-V-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g-~~~~v~lie~~~~~gg~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 96 (415)
|||||+|+||+++|..|++.. ++++|+|||+++.++.. . ......+....+++.....+.++..+++++.++.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999999876 45899999999876411 1 111112222333443334555667789999886542
Q ss_pred ----eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhh--HHHhcCCCCCCCCCCCCCCCCeEEEEcCCh
Q 014990 97 ----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF--VWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (415)
Q Consensus 97 ----~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~ 169 (415)
+.+.+.++ ...||+||||||+ .|+.|++||.+.++++....+ ...+... ...+++|+|||+|.
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs-~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~---------~~~~k~vvVVGgG~ 150 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGS-YPFILPIPGADKKGVYVFRTIEDLDAIMAM---------AQRFKKAAVIGGGL 150 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCC-CcCCCCCCCCCCCCEEEeCCHHHHHHHHHH---------hhcCCeEEEECCCH
Confidence 23444444 3589999999999 688889999987777764332 1112111 12578999999999
Q ss_pred hHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcH
Q 014990 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (415)
Q Consensus 170 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 249 (415)
+|+|+|..|.+ .+ .+|+++.+.+.+.....++
T Consensus 151 ~GlE~A~~L~~--------------------~G-~~Vtvv~~~~~ll~~~ld~--------------------------- 182 (785)
T TIGR02374 151 LGLEAAVGLQN--------------------LG-MDVSVIHHAPGLMAKQLDQ--------------------------- 182 (785)
T ss_pred HHHHHHHHHHh--------------------cC-CeEEEEccCCchhhhhcCH---------------------------
Confidence 99999999986 34 5899998876432111111
Q ss_pred HhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCc
Q 014990 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (415)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~ 329 (415)
.....+.+.+. +.||+++++..++++. . ++.+..+.+. +|
T Consensus 183 ------~~~~~l~~~l~-------------~~GV~v~~~~~v~~i~--~--~~~~~~v~~~----------------dG- 222 (785)
T TIGR02374 183 ------TAGRLLQRELE-------------QKGLTFLLEKDTVEIV--G--ATKADRIRFK----------------DG- 222 (785)
T ss_pred ------HHHHHHHHHHH-------------HcCCEEEeCCceEEEE--c--CCceEEEEEC----------------CC-
Confidence 11112222222 6689999999988886 3 4444455443 22
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---ccchhhhhhhHHH
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCAEE 406 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~---~~~~~~a~~~g~~ 406 (415)
+++++|+||+++|++|+. .+....++..+ |.+.+|++ ++|++|||||+|||+..+ .+....|..||+.
T Consensus 223 -~~i~~D~Vi~a~G~~Pn~----~la~~~gl~~~--ggI~Vd~~--~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~v 293 (785)
T TIGR02374 223 -SSLEADLIVMAAGIRPND----ELAVSAGIKVN--RGIIVNDS--MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKV 293 (785)
T ss_pred -CEEEcCEEEECCCCCcCc----HHHHhcCCccC--CCEEECCC--cccCCCCEEEeeecceeCCcccccHHHHHHHHHH
Confidence 279999999999999976 34455666665 55788876 889999999999998543 2455678999999
Q ss_pred HHhhccc
Q 014990 407 TVSSLSL 413 (415)
Q Consensus 407 ~a~~i~~ 413 (415)
+|.+|..
T Consensus 294 aA~ni~g 300 (785)
T TIGR02374 294 LADHICG 300 (785)
T ss_pred HHHHhcC
Confidence 9999864
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=249.99 Aligned_cols=286 Identities=14% Similarity=0.161 Sum_probs=184.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccc--cCCCCC-CcchHHHHHHHHHHhhccCeEEEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVR--SGVAPD-HPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
..++|||||||+||++||..|++.+++.+|+||++++.+.- ... ...... ..... .... .+.+...+++++.++
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~~~g~ 79 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-QVLP-ANWWQENNVHLHSGV 79 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-ccCC-HHHHHHCCCEEEcCC
Confidence 45689999999999999999999997779999998865421 110 000000 00000 0001 223445688888876
Q ss_pred Eec------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEE
Q 014990 94 TLG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVI 164 (415)
Q Consensus 94 ~v~------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~V 164 (415)
.+. +.+.+.++ ...||+||||||+ .++.+++++...+++++...... .+.. .+..+++|+|
T Consensus 80 ~V~~id~~~~~v~~~~g~~~~yd~LViATGs-~~~~~p~~~~~~~~v~~~~~~~da~~l~~---------~~~~~~~vvV 149 (396)
T PRK09754 80 TIKTLGRDTRELVLTNGESWHWDQLFIATGA-AARPLPLLDALGERCFTLRHAGDAARLRE---------VLQPERSVVI 149 (396)
T ss_pred EEEEEECCCCEEEECCCCEEEcCEEEEccCC-CCCCCCCCCcCCCCEEecCCHHHHHHHHH---------HhhcCCeEEE
Confidence 541 23444443 3589999999999 66777777665566666432211 1211 1235799999
Q ss_pred EcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCC
Q 014990 165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244 (415)
Q Consensus 165 VG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (415)
||+|.+|+|+|..|.+ .+ .+|+++.+.+.+......+
T Consensus 150 iGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~---------------------- 186 (396)
T PRK09754 150 VGAGTIGLELAASATQ--------------------RR-CKVTVIELAATVMGRNAPP---------------------- 186 (396)
T ss_pred ECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCcchhhhcCH----------------------
Confidence 9999999999999985 34 5899999876542111111
Q ss_pred CCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCccee
Q 014990 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYA 324 (415)
Q Consensus 245 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~ 324 (415)
.....+.+.+. +.||+++++..+.++. . ++.+ .+.+.
T Consensus 187 -----------~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~--~--~~~~-~v~l~-------------- 223 (396)
T PRK09754 187 -----------PVQRYLLQRHQ-------------QAGVRILLNNAIEHVV--D--GEKV-ELTLQ-------------- 223 (396)
T ss_pred -----------HHHHHHHHHHH-------------HCCCEEEeCCeeEEEE--c--CCEE-EEEEC--------------
Confidence 11111222222 5689999998888885 2 2221 22221
Q ss_pred ccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc--c------c
Q 014990 325 VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT--G------I 396 (415)
Q Consensus 325 ~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~--~------~ 396 (415)
+| ++++||.||+++|.+|+. .+....++..+ +.+.+|++ ++|+.|||||+|||+..+. + .
T Consensus 224 --~g--~~i~aD~Vv~a~G~~pn~----~l~~~~gl~~~--~gi~vd~~--~~ts~~~IyA~GD~a~~~~~~g~~~~~~~ 291 (396)
T PRK09754 224 --SG--ETLQADVVIYGIGISAND----QLAREANLDTA--NGIVIDEA--CRTCDPAIFAGGDVAITRLDNGALHRCES 291 (396)
T ss_pred --CC--CEEECCEEEECCCCChhh----HHHHhcCCCcC--CCEEECCC--CccCCCCEEEccceEeeeCCCCCEEEECc
Confidence 23 269999999999999975 24344565543 45889987 7899999999999984221 1 1
Q ss_pred hhhhhhhHHHHHhhccc
Q 014990 397 IATNLYCAEETVSSLSL 413 (415)
Q Consensus 397 ~~~a~~~g~~~a~~i~~ 413 (415)
...|+.||+.||.||..
T Consensus 292 ~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 292 WENANNQAQIAAAAMLG 308 (396)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 24799999999999864
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=248.98 Aligned_cols=287 Identities=18% Similarity=0.217 Sum_probs=184.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCc--------------------------c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP--------------------------E 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~--------------------------~ 70 (415)
+.++|+||||||||++||.+|++.| .+|+|||+. .+||.. .+++.|.+. .
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLG--LKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 5789999999999999999999999 999999986 456543 333333211 1
Q ss_pred hHH-------HHH----HHHHHhhccCeEEEeceEec------------eEEEeccc---ccccCEEEEccCCCCCCCCC
Q 014990 71 TKI-------VIN----QFSRVVQHERCSFFGNVTLG------------SSVSLSEL---RQLYHVVVLAYGAESDRALG 124 (415)
Q Consensus 71 ~~~-------~~~----~~~~~~~~~~~~~~~~~~v~------------~~v~~~~~---~~~~d~lvlAtG~~~~~~~~ 124 (415)
... +.+ ....++++.+++++.+.... ..+...++ ...||+||||||+ .|+.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs-~p~~~p 158 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS-RPVELP 158 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC-CCCCCC
Confidence 111 111 22344566688888876431 12333232 3589999999999 554433
Q ss_pred CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc
Q 014990 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (415)
Q Consensus 125 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (415)
....+...+++..+... + ...+++|+|||+|++|+|+|..|.+ .+ .
T Consensus 159 ~~~~~~~~~~~~~~~~~-~------------~~~~~~vvIIGgG~~G~E~A~~l~~--------------------~g-~ 204 (472)
T PRK05976 159 GLPFDGEYVISSDEALS-L------------ETLPKSLVIVGGGVIGLEWASMLAD--------------------FG-V 204 (472)
T ss_pred CCCCCCceEEcchHhhC-c------------cccCCEEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 22222223444333221 0 0136899999999999999999986 34 5
Q ss_pred eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEE
Q 014990 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (415)
Q Consensus 205 ~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 284 (415)
+|+++.|.+.+. |....+ +...+.+.+. +.||+
T Consensus 205 ~Vtli~~~~~il-----------------------------~~~~~~-----~~~~l~~~l~-------------~~gI~ 237 (472)
T PRK05976 205 EVTVVEAADRIL-----------------------------PTEDAE-----LSKEVARLLK-------------KLGVR 237 (472)
T ss_pred eEEEEEecCccC-----------------------------CcCCHH-----HHHHHHHHHH-------------hcCCE
Confidence 899999886542 111111 1111222222 56899
Q ss_pred EEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccC
Q 014990 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (415)
Q Consensus 285 ~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~ 364 (415)
++++..+.++. .+.++.+..+.. .+|+.+++++|.||+|+|.+|+. ..+.+ +..++.. +
T Consensus 238 i~~~~~v~~i~--~~~~~~~~~~~~----------------~~g~~~~i~~D~vi~a~G~~p~~-~~l~l-~~~~~~~-~ 296 (472)
T PRK05976 238 VVTGAKVLGLT--LKKDGGVLIVAE----------------HNGEEKTLEADKVLVSVGRRPNT-EGIGL-ENTDIDV-E 296 (472)
T ss_pred EEeCcEEEEEE--EecCCCEEEEEE----------------eCCceEEEEeCEEEEeeCCccCC-CCCCc-hhcCcee-c
Confidence 99998888875 201232221111 13444579999999999999975 22211 2334444 4
Q ss_pred CCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 365 ~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|.+.+|+. ++|+.|||||+|||+.++. ....|+.||+.+|.+|..
T Consensus 297 ~g~i~Vd~~--l~ts~~~IyAiGD~~~~~~-~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 297 GGFIQIDDF--CQTKERHIYAIGDVIGEPQ-LAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred CCEEEECCC--cccCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 689999987 7899999999999986554 455799999999998864
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=248.37 Aligned_cols=282 Identities=16% Similarity=0.229 Sum_probs=183.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCC-------------------------c-
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDH-------------------------P- 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~-------------------------~- 69 (415)
...++|+||||||||+++|..|++.| .+|+|||+.. +||.+ ..|+.|.+ +
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g--~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERG--ARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 46889999999999999999999999 9999999874 55522 22211111 0
Q ss_pred -chHHHHHH-------H-----HHHhhc-cCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCC
Q 014990 70 -ETKIVINQ-------F-----SRVVQH-ERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPG 127 (415)
Q Consensus 70 -~~~~~~~~-------~-----~~~~~~-~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g 127 (415)
....+... + ...++. .+++++.+.... ..++..++ ...||+||||||+ .|+.|++||
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs-~p~~p~i~G 159 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA-RPAEPPVPG 159 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC-CCCCCCCCC
Confidence 11122211 1 112322 367777665431 23443333 3589999999999 788889999
Q ss_pred CCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEE
Q 014990 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (415)
Q Consensus 128 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (415)
.+...+.+..+... . ...+++|+|||+|++|+|+|..|.+ .+ .+|+
T Consensus 160 ~~~~~~~~~~~~~~----l---------~~~~~~vvViG~G~~G~E~A~~l~~--------------------~g-~~Vt 205 (468)
T PRK14694 160 LAETPYLTSTSALE----L---------DHIPERLLVIGASVVALELAQAFAR--------------------LG-SRVT 205 (468)
T ss_pred CCCCceEcchhhhc----h---------hcCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEE
Confidence 76433333322110 0 0146899999999999999999986 34 5899
Q ss_pred EEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEe
Q 014990 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (415)
Q Consensus 208 l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 287 (415)
++.+...+ |.... .+...+.+.+. +.||++++
T Consensus 206 lv~~~~~l------------------------------~~~~~-----~~~~~l~~~l~-------------~~GI~v~~ 237 (468)
T PRK14694 206 VLARSRVL------------------------------SQEDP-----AVGEAIEAAFR-------------REGIEVLK 237 (468)
T ss_pred EEECCCCC------------------------------CCCCH-----HHHHHHHHHHH-------------hCCCEEEe
Confidence 99864321 11111 11112222222 56899999
Q ss_pred ccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCc
Q 014990 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGR 367 (415)
Q Consensus 288 ~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~ 367 (415)
+..+.++. . ++.. +.+.. .+. ++++|.||+|+|.+|+.. .+. ....++.. ++|+
T Consensus 238 ~~~v~~i~--~--~~~~--~~v~~---------------~~~--~i~~D~vi~a~G~~pn~~-~l~-l~~~g~~~-~~G~ 291 (468)
T PRK14694 238 QTQASEVD--Y--NGRE--FILET---------------NAG--TLRAEQLLVATGRTPNTE-NLN-LESIGVET-ERGA 291 (468)
T ss_pred CCEEEEEE--E--cCCE--EEEEE---------------CCC--EEEeCEEEEccCCCCCcC-CCC-chhcCccc-CCCe
Confidence 98888875 3 3221 21111 111 599999999999999762 111 23445654 4789
Q ss_pred eeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 368 VLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 368 i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+.+|++ ++|+.|||||+|||+..+. .+..|+.||+.||.+|..
T Consensus 292 i~vd~~--~~Ts~~~IyA~GD~~~~~~-~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 292 IRIDEH--LQTTVSGIYAAGDCTDQPQ-FVYVAAAGGSRAAINMTG 334 (468)
T ss_pred EeeCCC--cccCCCCEEEEeecCCCcc-cHHHHHHHHHHHHHHhcC
Confidence 999987 8899999999999986555 444799999999999853
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=248.82 Aligned_cols=285 Identities=18% Similarity=0.218 Sum_probs=188.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCcc--------------------------h
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPE--------------------------T 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~~--------------------------~ 71 (415)
.++|+||||||||+++|.+|++.| .+|+|||+ +.+||.. .++..|.+.. .
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G--~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLG--LKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 379999999999999999999999 99999999 6677742 2333332110 0
Q ss_pred HHHH-----------HHHHHHhhccCeEEEeceEec---e--EEEecc--cccccCEEEEccCCCCCCCCCCC-CCCCCC
Q 014990 72 KIVI-----------NQFSRVVQHERCSFFGNVTLG---S--SVSLSE--LRQLYHVVVLAYGAESDRALGIP-GEDLIG 132 (415)
Q Consensus 72 ~~~~-----------~~~~~~~~~~~~~~~~~~~v~---~--~v~~~~--~~~~~d~lvlAtG~~~~~~~~i~-g~~~~~ 132 (415)
..+. ......++..+++++.+.... . .+...+ ....||+||||||+ .|+.|++| +.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~-~p~~~~~~~~~~~~~ 156 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGS-RPRSLPGPFDFDGEV 156 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCC-CCCCCCCCCCCCCce
Confidence 0110 111233445567777665431 1 222222 23579999999999 67777776 333223
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+++..+... . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|+
T Consensus 157 ~~~~~~~~~----~---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~ 202 (461)
T TIGR01350 157 VITSTGALN----L---------KEVPESLVIIGGGVIGIEFASIFAS--------------------LG-SKVTVIEML 202 (461)
T ss_pred EEcchHHhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcC
Confidence 444433221 0 1146899999999999999999986 34 589999988
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+.. ..+. .+...+.+.+. +.||+++++..+.
T Consensus 203 ~~~l~-~~~~---------------------------------~~~~~~~~~l~-------------~~gi~i~~~~~v~ 235 (461)
T TIGR01350 203 DRILP-GEDA---------------------------------EVSKVVAKALK-------------KKGVKILTNTKVT 235 (461)
T ss_pred CCCCC-CCCH---------------------------------HHHHHHHHHHH-------------HcCCEEEeCCEEE
Confidence 65321 1111 11112222222 5689999999888
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . +++.+. +... .|+.+++++|.||+|+|++|+. ..+ +....++..+++|.+.+|+
T Consensus 236 ~i~--~-~~~~v~-v~~~----------------~g~~~~i~~D~vi~a~G~~p~~-~~l-~~~~~gl~~~~~g~i~vd~ 293 (461)
T TIGR01350 236 AVE--K-NDDQVV-YENK----------------GGETETLTGEKVLVAVGRKPNT-EGL-GLENLGVELDERGRIVVDE 293 (461)
T ss_pred EEE--E-eCCEEE-EEEe----------------CCcEEEEEeCEEEEecCCcccC-CCC-CcHhhCceECCCCcEeeCC
Confidence 886 3 233221 2211 2333479999999999999965 221 2355677888889999998
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ++|+.|+|||+|||+.++. ....|+.||+.+|.+|..
T Consensus 294 ~--l~t~~~~IyaiGD~~~~~~-~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 294 Y--MRTNVPGIYAIGDVIGGPM-LAHVASHEGIVAAENIAG 331 (461)
T ss_pred C--cccCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 6 7899999999999986554 455799999999999864
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=247.39 Aligned_cols=288 Identities=15% Similarity=0.172 Sum_probs=186.0
Q ss_pred eEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCCc-cccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGL-VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
+|||||||+||+++|.+|+++ .++.+|+|||+++...-. .......+.....++...+.++++..+++++.+..+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 599999999999999999765 356999999998763211 11111122223445555667777778899887765432
Q ss_pred ----EEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechh---hHH---HhcCCCCCCCCCCCCCCCCeEEEEc
Q 014990 98 ----SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE---FVW---WYNGHPDGKNLSPDLKSTDTAVILG 166 (415)
Q Consensus 98 ----~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~---~~~---~~~~~~~~~~~~~~~~~~k~V~VVG 166 (415)
.+.++++ ..+||+||||||+ .+..|++||.. ++++.... +.. .+..... ....+++|+|||
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vvVvG 152 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGS-TTPLSGVEGAA-DLAVPVKPIENFLARWEALLESAD------APPGTKRLAVVG 152 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCC-CCCCCCCCccc-ccccccCCHHHHHHHHHHHHHHHh------cCCCCceEEEEC
Confidence 3444444 3589999999999 67788899843 33332211 111 1111000 011467999999
Q ss_pred CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCc-ceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCC
Q 014990 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSI-RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS 245 (415)
Q Consensus 167 ~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (415)
+|.+|+|+|..|.+ .++..+. .+|+++ +.+.+...+.
T Consensus 153 ~G~~g~E~A~~l~~----------------~~~~~g~~~~V~li-~~~~~l~~~~------------------------- 190 (364)
T TIGR03169 153 GGAAGVEIALALRR----------------RLPKRGLRGQVTLI-AGASLLPGFP------------------------- 190 (364)
T ss_pred CCHHHHHHHHHHHH----------------HHHhcCCCceEEEE-eCCcccccCC-------------------------
Confidence 99999999999974 1111232 478888 4433211111
Q ss_pred CCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceec
Q 014990 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (415)
Q Consensus 246 p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~ 325 (415)
+..+..+.+.+. +.+|+++.+..+.++. . + .+.+.
T Consensus 191 ---------~~~~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~--~----~v~~~--------------- 225 (364)
T TIGR03169 191 ---------AKVRRLVLRLLA-------------RRGIEVHEGAPVTRGP--D--G----ALILA--------------- 225 (364)
T ss_pred ---------HHHHHHHHHHHH-------------HCCCEEEeCCeeEEEc--C--C----eEEeC---------------
Confidence 111122223332 5689999988877774 2 2 23321
Q ss_pred cCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCc-ccCCeeeeeccccCC----ccchhhh
Q 014990 326 GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ-VENGLYVCGWLKRGP----TGIIATN 400 (415)
Q Consensus 326 ~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t-~~p~vfaiGD~~~~~----~~~~~~a 400 (415)
+| +++++|.||||+|.+|++ +....++.++++|++.+|++ +++ ++|||||+|||+..+ ......|
T Consensus 226 -~g--~~i~~D~vi~a~G~~p~~-----~l~~~gl~~~~~g~i~vd~~--l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A 295 (364)
T TIGR03169 226 -DG--RTLPADAILWATGARAPP-----WLAESGLPLDEDGFLRVDPT--LQSLSHPHVFAAGDCAVITDAPRPKAGVYA 295 (364)
T ss_pred -CC--CEEecCEEEEccCCChhh-----HHHHcCCCcCCCCeEEECCc--cccCCCCCEEEeeeeeecCCCCCCCchHHH
Confidence 22 379999999999999965 22345667777899999986 565 999999999998422 2233469
Q ss_pred hhhHHHHHhhccc
Q 014990 401 LYCAEETVSSLSL 413 (415)
Q Consensus 401 ~~~g~~~a~~i~~ 413 (415)
+.||+.+|.||.+
T Consensus 296 ~~~g~~~a~ni~~ 308 (364)
T TIGR03169 296 VRQAPILAANLRA 308 (364)
T ss_pred HHhHHHHHHHHHH
Confidence 9999999999864
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=247.57 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=187.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC--------CCCCc-cccCCCCCCc--------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHP-------------------- 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~--------~~gg~-~~~~~~~~~~-------------------- 69 (415)
.++|+|||+||||+.+|..+++.| .+|+|||+.. ..||. +..++.|.+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G--~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYG--AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 479999999999999999999999 9999999731 35553 3333333211
Q ss_pred -------chH-------HH----HHHHHHHhhccCeEEEeceEe---ceEEEec--c---cccccCEEEEccCCCCCCCC
Q 014990 70 -------ETK-------IV----INQFSRVVQHERCSFFGNVTL---GSSVSLS--E---LRQLYHVVVLAYGAESDRAL 123 (415)
Q Consensus 70 -------~~~-------~~----~~~~~~~~~~~~~~~~~~~~v---~~~v~~~--~---~~~~~d~lvlAtG~~~~~~~ 123 (415)
... +. .......++..+++++.+... ...+.+. + ....||+||||||+ .|+.|
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~~p 158 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGE-RPRYP 158 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCC-CCCCC
Confidence 000 01 112234456667888766543 1123321 2 13589999999999 67888
Q ss_pred CCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCc
Q 014990 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (415)
Q Consensus 124 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (415)
++||.+. ...++.+... . ...+++++|||+|++|+|+|..|.+ .+
T Consensus 159 ~ipG~~~-~~~~~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G- 203 (484)
T TIGR01438 159 GIPGAKE-LCITSDDLFS----L---------PYCPGKTLVVGASYVALECAGFLAG--------------------IG- 203 (484)
T ss_pred CCCCccc-eeecHHHhhc----c---------cccCCCEEEECCCHHHHHHHHHHHH--------------------hC-
Confidence 8998742 2233322221 1 0135789999999999999999986 34
Q ss_pred ceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeE
Q 014990 204 RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL 283 (415)
Q Consensus 204 ~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 283 (415)
.+|+++.|. .+. +..++++ ...+.+.|. +.||
T Consensus 204 ~~Vtli~~~-~~l-~~~d~~~---------------------------------~~~l~~~L~-------------~~gV 235 (484)
T TIGR01438 204 LDVTVMVRS-ILL-RGFDQDC---------------------------------ANKVGEHME-------------EHGV 235 (484)
T ss_pred CcEEEEEec-ccc-cccCHHH---------------------------------HHHHHHHHH-------------HcCC
Confidence 589999874 221 1111111 112222332 5689
Q ss_pred EEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcccc
Q 014990 284 HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN 363 (415)
Q Consensus 284 ~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~ 363 (415)
+++++..+.++. . .++.+ .+++.+ .++.+++++|.||||+|++|+. ..+. .+..++.++
T Consensus 236 ~i~~~~~v~~v~--~-~~~~~-~v~~~~---------------~~~~~~i~~D~vl~a~G~~pn~-~~l~-l~~~gv~~~ 294 (484)
T TIGR01438 236 KFKRQFVPIKVE--Q-IEAKV-KVTFTD---------------STNGIEEEYDTVLLAIGRDACT-RKLN-LENVGVKIN 294 (484)
T ss_pred EEEeCceEEEEE--E-cCCeE-EEEEec---------------CCcceEEEeCEEEEEecCCcCC-CcCC-cccccceec
Confidence 999998888876 3 22222 233321 1113479999999999999976 2222 245677776
Q ss_pred C-CCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 364 I-RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 364 ~-~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ +|.+.+|+. ++|+.|||||+|||+.........|+.||+.+|.+|..
T Consensus 295 ~~~G~I~Vd~~--~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 295 KKTGKIPADEE--EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcCCeEecCCC--cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 5 489999986 88999999999999864444566899999999999863
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=247.78 Aligned_cols=289 Identities=17% Similarity=0.227 Sum_probs=187.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC------CCCCCCc-cccCCCCCCc---------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR------LPTPFGL-VRSGVAPDHP--------------------- 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~------~~~~gg~-~~~~~~~~~~--------------------- 69 (415)
..++|+||||||||++||.++++.+ .+|+|||+ ...+||. ..+++.|.+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g--~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCC--CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 4689999999999999999999999 99999998 2344543 2222222100
Q ss_pred ------chHHHH-----------HHHHHHhhccCeEEEeceEe-------ceEEEecc---cccccCEEEEccCCCCCCC
Q 014990 70 ------ETKIVI-----------NQFSRVVQHERCSFFGNVTL-------GSSVSLSE---LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 70 ------~~~~~~-----------~~~~~~~~~~~~~~~~~~~v-------~~~v~~~~---~~~~~d~lvlAtG~~~~~~ 122 (415)
....+. .....+++..+++++.+... ...+.+.. ....||+||||||+ .|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs-~p~~ 159 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGS-EPRH 159 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCC-CCCC
Confidence 001111 12233445567887765542 12343321 24589999999999 5554
Q ss_pred CCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC
Q 014990 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (415)
Q Consensus 123 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (415)
++..+.+...++++..... . ...+++|+|||+|.+|+|+|..|.+ .+
T Consensus 160 ~p~~~~~~~~~~~~~~~~~----~---------~~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g 206 (475)
T PRK06327 160 LPGVPFDNKIILDNTGALN----F---------TEVPKKLAVIGAGVIGLELGSVWRR--------------------LG 206 (475)
T ss_pred CCCCCCCCceEECcHHHhc----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 3322222333444332221 1 0146899999999999999998885 34
Q ss_pred cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCcee
Q 014990 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (415)
Q Consensus 203 ~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (415)
.+|+++.|++.+... .++++ ...+.+.+. +.|
T Consensus 207 -~~Vtli~~~~~~l~~-~d~~~---------------------------------~~~~~~~l~-------------~~g 238 (475)
T PRK06327 207 -AEVTILEALPAFLAA-ADEQV---------------------------------AKEAAKAFT-------------KQG 238 (475)
T ss_pred -CeEEEEeCCCccCCc-CCHHH---------------------------------HHHHHHHHH-------------HcC
Confidence 589999988654211 11111 111222222 568
Q ss_pred EEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccc
Q 014990 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (415)
Q Consensus 283 v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~ 362 (415)
|+++++..+.++. . .++.+ .+.+.+. +|+.+++++|.|++++|++|+. ..+ ..+..++.+
T Consensus 239 i~i~~~~~v~~i~--~-~~~~v-~v~~~~~--------------~g~~~~i~~D~vl~a~G~~p~~-~~l-~~~~~g~~~ 298 (475)
T PRK06327 239 LDIHLGVKIGEIK--T-GGKGV-SVAYTDA--------------DGEAQTLEVDKLIVSIGRVPNT-DGL-GLEAVGLKL 298 (475)
T ss_pred cEEEeCcEEEEEE--E-cCCEE-EEEEEeC--------------CCceeEEEcCEEEEccCCccCC-CCC-CcHhhCcee
Confidence 9999999998886 3 22322 2333220 2444579999999999999975 211 224567788
Q ss_pred cCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 363 ~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+++|.+.+|++ ++|+.|||||+|||+..+. ....|+.||..+|.+|..
T Consensus 299 ~~~G~i~vd~~--~~Ts~~~VyA~GD~~~~~~-~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 299 DERGFIPVDDH--CRTNVPNVYAIGDVVRGPM-LAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCCCeEeECCC--CccCCCCEEEEEeccCCcc-hHHHHHHHHHHHHHHHcC
Confidence 88899999987 7899999999999986555 445799999999999864
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=245.71 Aligned_cols=284 Identities=16% Similarity=0.215 Sum_probs=186.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCCC------------------------cc-
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH------------------------PE- 70 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~~------------------------~~- 70 (415)
+.+++|+|||+||||+++|..|++.| .+|+|||+.+.+||.+. .++.|.+ +.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 46789999999999999999999999 99999999877776432 2211210 00
Q ss_pred -hHHHH-------HH-----HHHHhhc-cCeEEEeceEe---ce--EEEeccc---ccccCEEEEccCCCCCCCCCCCCC
Q 014990 71 -TKIVI-------NQ-----FSRVVQH-ERCSFFGNVTL---GS--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (415)
Q Consensus 71 -~~~~~-------~~-----~~~~~~~-~~~~~~~~~~v---~~--~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~ 128 (415)
...+. .. +...++. .+++++.+... .. .+...++ +..||+||||||+ .|+.|++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~p~i~G~ 170 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS-TPTIPPIPGL 170 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC-CCCCCCCCCc
Confidence 11111 11 1222332 26777665432 11 2322232 3589999999999 7888899997
Q ss_pred CCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEE
Q 014990 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (415)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 208 (415)
+.....+..+.+. . ...+++|+|||+|++|+|+|..+.+ .+ .+|++
T Consensus 171 ~~~~~~~~~~~l~---~----------~~~~k~vvVIGgG~iG~E~A~~l~~--------------------~G-~~Vtl 216 (479)
T PRK14727 171 MDTPYWTSTEALF---S----------DELPASLTVIGSSVVAAEIAQAYAR--------------------LG-SRVTI 216 (479)
T ss_pred CccceecchHHhc---c----------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 5433333222111 0 0136899999999999999999985 34 58999
Q ss_pred EeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEec
Q 014990 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (415)
Q Consensus 209 ~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 288 (415)
+.|...+ . ..++++ ...+.+.+. +.||+++++
T Consensus 217 v~~~~~l-~-~~d~~~---------------------------------~~~l~~~L~-------------~~GV~i~~~ 248 (479)
T PRK14727 217 LARSTLL-F-REDPLL---------------------------------GETLTACFE-------------KEGIEVLNN 248 (479)
T ss_pred EEcCCCC-C-cchHHH---------------------------------HHHHHHHHH-------------hCCCEEEcC
Confidence 9875321 1 111111 111222222 568999998
Q ss_pred cccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCce
Q 014990 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (415)
Q Consensus 289 ~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i 368 (415)
..+.++. . .++ .+.+.. . ++ ++++|.||+|+|++|+.. .+. ....++.++++|.+
T Consensus 249 ~~V~~i~--~-~~~---~~~v~~---------------~-~g-~i~aD~VlvA~G~~pn~~-~l~-l~~~g~~~~~~G~i 303 (479)
T PRK14727 249 TQASLVE--H-DDN---GFVLTT---------------G-HG-ELRAEKLLISTGRHANTH-DLN-LEAVGVTTDTSGAI 303 (479)
T ss_pred cEEEEEE--E-eCC---EEEEEE---------------c-CC-eEEeCEEEEccCCCCCcc-CCC-chhhCceecCCCCE
Confidence 8888775 3 222 122211 1 11 589999999999999762 111 24457788888999
Q ss_pred eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 369 ~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.+|++ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 304 ~Vd~~--~~Ts~~~IyA~GD~~~~~~-~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 304 VVNPA--METSAPDIYAAGDCSDLPQ-FVYVAAAAGSRAGINMTG 345 (479)
T ss_pred EECCC--eecCCCCEEEeeecCCcch-hhhHHHHHHHHHHHHHcC
Confidence 99987 8899999999999986554 344799999999999864
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=252.26 Aligned_cols=316 Identities=19% Similarity=0.203 Sum_probs=213.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC----------------------------CCCCccccCCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----------------------------TPFGLVRSGVAPD 67 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~----------------------------~~gg~~~~~~~~~ 67 (415)
.++.++|+||||||||++||.+|++.| ++|++||+.+ .+||...|++ |
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI-p- 455 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI-T- 455 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc-c-
Confidence 357899999999999999999999999 9999999852 2788999999 4
Q ss_pred CcchHHHHHHHHHHhhc-cCeEEEeceEeceEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcC
Q 014990 68 HPETKIVINQFSRVVQH-ERCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG 145 (415)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~ 145 (415)
+.++++.++.+...++. .+++++.++.++.+++.++.. ..||+|+||||++.++.+++||.+.++++++.+|+..++.
T Consensus 456 ~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~ 535 (1028)
T PRK06567 456 VRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQS 535 (1028)
T ss_pred ccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhh
Confidence 56677776665555543 357888899999888887754 5799999999997799999999999999999998877643
Q ss_pred CCCC-CCCCCCCCCCCeEEEEcCChhHHHHHHHHhc----Ccccc-----------cccCchhHHHHHhhcCCcc-----
Q 014990 146 HPDG-KNLSPDLKSTDTAVILGQGNVALDVARILLR----PTEEL-----------ATTDIASYAWTALEGSSIR----- 204 (415)
Q Consensus 146 ~~~~-~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~----- 204 (415)
.... .....++..+++|+|||||++|+|+|..... +.+.+ -..+|++.+..+++..+..
T Consensus 536 ~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~ 615 (1028)
T PRK06567 536 GGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEE 615 (1028)
T ss_pred cccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccch
Confidence 2111 1112223357899999999999999985432 00000 1234555555555553311
Q ss_pred ---------eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCC
Q 014990 205 ---------KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQ 275 (415)
Q Consensus 205 ---------~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (415)
.|+++.|+... .+|....+.. .+..++
T Consensus 616 v~~l~~~~G~VtIvYRr~~~----------------------------empA~~~~~e------Ev~~A~---------- 651 (1028)
T PRK06567 616 LRKVFNKLGGATVYYRGRLQ----------------------------DSPAYKLNHE------ELIYAL---------- 651 (1028)
T ss_pred hhhhhccCCceEEEecCChh----------------------------hCCCCCCCHH------HHHHHH----------
Confidence 15555555432 2454311111 011111
Q ss_pred CCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-----cC---C-C--CCcceecc-CCceEEEecCeeEEeec
Q 014990 276 PMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-----KG---G-G--PGKQYAVG-TGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-----~~---~-~--~g~~~~~~-~g~~~~i~~D~vi~atG 343 (415)
++||.+++...|.++. .++++++.++++..... .+ . + .|..-..+ .+++.+++||.||+|+|
T Consensus 652 ----eEGV~f~~~~~P~~i~--~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G 725 (1028)
T PRK06567 652 ----ALGVDFKENMQPLRIN--VDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG 725 (1028)
T ss_pred ----HcCcEEEecCCcEEEE--ecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc
Confidence 7899999999999997 53468999999876541 11 0 0 12222222 34557899999999999
Q ss_pred cCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 344 YKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 344 ~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
..|+.. +. ..+. + +-++.+++|+- .++ .||.+|+.++.+|.+
T Consensus 726 ~~~~~~----~~-------------~~~~-s-~~~d~~~~f~G--------tvv-~A~as~k~~~~~i~~ 767 (1028)
T PRK06567 726 IENNTQ----FD-------------EDKY-S-YFGDCNPKYSG--------SVV-KALASSKEGYDAINK 767 (1028)
T ss_pred cCCccc----cc-------------cccc-c-cccCCCCcccc--------HHH-HHHHHHHhHHHHHHH
Confidence 999762 11 0011 1 33455666654 345 699999999999864
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=241.50 Aligned_cols=282 Identities=16% Similarity=0.205 Sum_probs=181.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC--------CCCCc-cccCCCCCC---------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDH--------------------- 68 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~--------~~gg~-~~~~~~~~~--------------------- 68 (415)
.++|+||||||||++||.++++.| .+|+|||+.. .+||. +..++.|.+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 589999999999999999999999 9999999631 36664 333333421
Q ss_pred -----cchHHHHHHHHHH-----------hhccCeEEEeceEe---ceEEEecc----cccccCEEEEccCCCCCCCC-C
Q 014990 69 -----PETKIVINQFSRV-----------VQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRAL-G 124 (415)
Q Consensus 69 -----~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v---~~~v~~~~----~~~~~d~lvlAtG~~~~~~~-~ 124 (415)
....++.+++.+. ++..+++++.+... .+.+...+ ....||+||||||+ .|+.| +
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs-~p~~p~~ 161 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG-RPSIPED 161 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC-CCCCCCC
Confidence 1112222222222 22245555544322 12233221 23589999999999 56665 4
Q ss_pred CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc
Q 014990 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (415)
Q Consensus 125 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (415)
+||.+.. ..++.++.. + ...+++|+|||+|.+|+|+|..|.+ .+ .
T Consensus 162 i~G~~~~-~~~~~~~~~-~------------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G-~ 206 (499)
T PTZ00052 162 VPGAKEY-SITSDDIFS-L------------SKDPGKTLIVGASYIGLETAGFLNE--------------------LG-F 206 (499)
T ss_pred CCCccce-eecHHHHhh-h------------hcCCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 8886422 233333221 0 0146799999999999999999986 34 5
Q ss_pred eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEE
Q 014990 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (415)
Q Consensus 205 ~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 284 (415)
+|+++.++.. .. ..++++ ...+.+.|. +.||+
T Consensus 207 ~Vtli~~~~~-l~-~~d~~~---------------------------------~~~l~~~l~-------------~~GV~ 238 (499)
T PTZ00052 207 DVTVAVRSIP-LR-GFDRQC---------------------------------SEKVVEYMK-------------EQGTL 238 (499)
T ss_pred cEEEEEcCcc-cc-cCCHHH---------------------------------HHHHHHHHH-------------HcCCE
Confidence 7999987532 11 111111 111222222 56899
Q ss_pred EEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccC
Q 014990 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (415)
Q Consensus 285 ~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~ 364 (415)
++++..+.++. . .++.+ .+.+. +|+ ++++|.|||++|++|+. ..+. .+..++.+++
T Consensus 239 i~~~~~v~~v~--~-~~~~~-~v~~~----------------~g~--~i~~D~vl~a~G~~pn~-~~l~-l~~~g~~~~~ 294 (499)
T PTZ00052 239 FLEGVVPINIE--K-MDDKI-KVLFS----------------DGT--TELFDTVLYATGRKPDI-KGLN-LNAIGVHVNK 294 (499)
T ss_pred EEcCCeEEEEE--E-cCCeE-EEEEC----------------CCC--EEEcCEEEEeeCCCCCc-cccC-chhcCcEECC
Confidence 99998887775 3 12222 23221 222 68999999999999976 2121 2456778888
Q ss_pred CCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 365 ~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|.+.+++ .+|+.|||||+|||+.+.......|++||+.+|.+|..
T Consensus 295 ~G~ii~~~---~~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 295 SNKIIAPN---DCTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred CCCEeeCC---CcCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhC
Confidence 89876665 37899999999999865555666899999999999864
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=237.64 Aligned_cols=281 Identities=12% Similarity=0.177 Sum_probs=179.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCc--------------------------c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP--------------------------E 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~--------------------------~ 70 (415)
++++|+|||+||||..+|.. ..| .+|+|||+.. +|| ....|+.|.+. .
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g--~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FAD--KRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCC--CeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccC
Confidence 35899999999999998754 457 9999999865 444 33344333211 0
Q ss_pred hHHHH--------HHHH----HH-h--hccCeEEEeceEe---ceEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCC
Q 014990 71 TKIVI--------NQFS----RV-V--QHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLI 131 (415)
Q Consensus 71 ~~~~~--------~~~~----~~-~--~~~~~~~~~~~~v---~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~ 131 (415)
...+. ..+. .. . +..+++++.+... .+.+.+.++ ...||+||||||+ .|..|++.+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs-~p~~p~~~~~~~~ 154 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGS-RPYIPPAIADSGV 154 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECC-CCCCCCCCCCCCC
Confidence 11111 1111 11 1 2257777776554 233555443 3589999999999 5666664333222
Q ss_pred CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEee
Q 014990 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (415)
Q Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r 211 (415)
.+.+..+... +. ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.+
T Consensus 155 ~~~~~~~~~~-l~------------~~~k~vvVIGgG~ig~E~A~~l~~--------------------~G-~~Vtli~~ 200 (452)
T TIGR03452 155 RYHTNEDIMR-LP------------ELPESLVIVGGGYIAAEFAHVFSA--------------------LG-TRVTIVNR 200 (452)
T ss_pred EEEcHHHHHh-hh------------hcCCcEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEEc
Confidence 2333333221 10 136899999999999999999985 34 58999998
Q ss_pred cCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccc
Q 014990 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (415)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (415)
.+.+...+ ++ ++ ...+.+.+ ..+++++++..+
T Consensus 201 ~~~ll~~~-d~----------------------------~~-----~~~l~~~~--------------~~gI~i~~~~~V 232 (452)
T TIGR03452 201 STKLLRHL-DE----------------------------DI-----SDRFTEIA--------------KKKWDIRLGRNV 232 (452)
T ss_pred cCcccccc-CH----------------------------HH-----HHHHHHHH--------------hcCCEEEeCCEE
Confidence 76432111 11 11 11111111 346899998888
Q ss_pred ccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeec
Q 014990 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371 (415)
Q Consensus 292 ~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~ 371 (415)
.++. . +++.+ .+.+. +| +++++|.|++++|++|+. ..+. ....|+.++++|++.+|
T Consensus 233 ~~i~--~-~~~~v-~v~~~----------------~g--~~i~~D~vl~a~G~~pn~-~~l~-~~~~gl~~~~~G~i~vd 288 (452)
T TIGR03452 233 TAVE--Q-DGDGV-TLTLD----------------DG--STVTADVLLVATGRVPNG-DLLD-AEAAGVEVDEDGRIKVD 288 (452)
T ss_pred EEEE--E-cCCeE-EEEEc----------------CC--CEEEcCEEEEeeccCcCC-CCcC-chhcCeeECCCCcEeeC
Confidence 8886 3 23222 12211 22 279999999999999976 2111 24567888888999999
Q ss_pred cCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 372 ~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++ ++|+.|||||+|||+..+ .+...|.+||+.+|.+|..
T Consensus 289 ~~--~~Ts~~~IyA~GD~~~~~-~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 289 EY--GRTSARGVWALGDVSSPY-QLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CC--cccCCCCEEEeecccCcc-cChhHHHHHHHHHHHHhcC
Confidence 87 789999999999998643 4555799999999999864
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=239.24 Aligned_cols=300 Identities=13% Similarity=0.101 Sum_probs=185.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC-CCCCCc-cccCCCCCCc---------------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFGL-VRSGVAPDHP--------------------------- 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~-~~~gg~-~~~~~~~~~~--------------------------- 69 (415)
.++|+|||+||||+.+|..+++.| .+|+|||+. ..+||. ...|+.|.+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G--~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERG--LKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 679999999999999999999999 999999974 345553 2233222111
Q ss_pred --------------------chHHHHH-----------HHHHHhhccC-------eEEEeceEe--c-eEEEe--ccccc
Q 014990 70 --------------------ETKIVIN-----------QFSRVVQHER-------CSFFGNVTL--G-SSVSL--SELRQ 106 (415)
Q Consensus 70 --------------------~~~~~~~-----------~~~~~~~~~~-------~~~~~~~~v--~-~~v~~--~~~~~ 106 (415)
....+.+ .+...++..+ ++++.+... + ..+.. +....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i 273 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEF 273 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEE
Confidence 0111111 1222233332 555554332 1 12322 12235
Q ss_pred ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCccccc
Q 014990 107 LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELA 186 (415)
Q Consensus 107 ~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~ 186 (415)
.||+||||||+ .|+.|++++.+...++++.+... +. ..+++|+|||+|++|+|+|..+.+
T Consensus 274 ~ad~lIIATGS-~P~~P~~~~~~~~~V~ts~d~~~-l~------------~lpk~VvIVGgG~iGvE~A~~l~~------ 333 (659)
T PTZ00153 274 KVKNIIIATGS-TPNIPDNIEVDQKSVFTSDTAVK-LE------------GLQNYMGIVGMGIIGLEFMDIYTA------ 333 (659)
T ss_pred ECCEEEEcCCC-CCCCCCCCCCCCCcEEehHHhhh-hh------------hcCCceEEECCCHHHHHHHHHHHh------
Confidence 89999999999 67777766666566776654332 11 136899999999999999998885
Q ss_pred ccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHH
Q 014990 187 TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLS 266 (415)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 266 (415)
.+ .+|+++.+.+.+...+ +.++.+ .+.+.+.
T Consensus 334 --------------~G-~eVTLIe~~~~ll~~~-d~eis~---------------------------------~l~~~ll 364 (659)
T PTZ00153 334 --------------LG-SEVVSFEYSPQLLPLL-DADVAK---------------------------------YFERVFL 364 (659)
T ss_pred --------------CC-CeEEEEeccCcccccC-CHHHHH---------------------------------HHHHHHh
Confidence 34 5899999987543211 111111 1111110
Q ss_pred HHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 267 KAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 267 ~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
.+.||+++++..+.++. . ++....+.+...... ++..+. ....++.+++++|.||||+|++
T Consensus 365 ------------~~~GV~I~~~~~V~~I~--~--~~~~~~v~v~~~~~~~~~~~~~--~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 365 ------------KSKPVRVHLNTLIEYVR--A--GKGNQPVIIGHSERQTGESDGP--KKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred ------------hcCCcEEEcCCEEEEEE--e--cCCceEEEEEEecccccccccc--ccccccceEEEcCEEEEEECcc
Confidence 15689999999998886 3 221112322110000 000000 0000122479999999999999
Q ss_pred CccCCCCcccCCCCccccCCCceeeccCCCCCcc------cCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 346 SVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQV------ENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 346 p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~------~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+. ..+.+ +..++..+ +|+|.||++ ++|+ +|||||+|||+..+ .+...|.+||+.+|++|..
T Consensus 427 Pnt-~~L~l-~~~gi~~~-~G~I~VDe~--lqTs~~~~~~v~~IYAiGDv~g~~-~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 427 PNT-NNLGL-DKLKIQMK-RGFVSVDEH--LRVLREDQEVYDNIFCIGDANGKQ-MLAHTASHQALKVVDWIEG 494 (659)
T ss_pred cCC-ccCCc-hhcCCccc-CCEEeECCC--CCcCCCCCCCCCCEEEEEecCCCc-cCHHHHHHHHHHHHHHHcC
Confidence 976 22222 34456665 499999987 6776 69999999998544 4666899999999999864
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=250.74 Aligned_cols=278 Identities=21% Similarity=0.182 Sum_probs=192.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC--CCCCcchHHHHHHHHHHhhcc-CeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV--APDHPETKIVINQFSRVVQHE-RCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 94 (415)
..++|+||||||||++||.++++.+ .+|+|||+++.+||.+.+.. .++ ....+....+.+.+... ++.+..++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G--~~V~liD~~~~~GG~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~v~v~~~t~ 238 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQPEAGGSLLSEAETIDG-KPAADWAAATVAELTAMPEVTLLPRTT 238 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCeeeccccccCC-ccHHHHHHHHHHHHhcCCCcEEEcCCE
Confidence 3578999999999999999999999 99999999999998876432 111 22334445555555545 477777654
Q ss_pred ece-----------EEE----------eccc--ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCC
Q 014990 95 LGS-----------SVS----------LSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN 151 (415)
Q Consensus 95 v~~-----------~v~----------~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~ 151 (415)
+.. ... ..+. ...||+||||||+ .+++|++||++.++++++......++..
T Consensus 239 V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa-~~r~~pipG~~~pgV~~~~~~~~~l~~~----- 312 (985)
T TIGR01372 239 AFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA-HERPLVFANNDRPGVMLAGAARTYLNRY----- 312 (985)
T ss_pred EEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC-CCcCCCCCCCCCCCcEEchHHHHHHHhh-----
Confidence 411 000 0001 2479999999999 7899999999999999875544333321
Q ss_pred CCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCC
Q 014990 152 LSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIK 231 (415)
Q Consensus 152 ~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~ 231 (415)
.+..+++|+|||+|++|+|+|..|.+ .+.+.|+++.+++.. ...
T Consensus 313 ---~~~~gk~VvViG~G~~g~e~A~~L~~--------------------~G~~vV~vv~~~~~~-----~~~-------- 356 (985)
T TIGR01372 313 ---GVAPGKRIVVATNNDSAYRAAADLLA--------------------AGIAVVAIIDARADV-----SPE-------- 356 (985)
T ss_pred ---CcCCCCeEEEECCCHHHHHHHHHHHH--------------------cCCceEEEEccCcch-----hHH--------
Confidence 12368999999999999999999986 566778888765421 000
Q ss_pred CeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEee
Q 014990 232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (415)
Q Consensus 232 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~ 311 (415)
..+.+. +.||+++++..+.++. . ++.+.++++..
T Consensus 357 -----------------------------l~~~L~-------------~~GV~i~~~~~v~~i~--g--~~~v~~V~l~~ 390 (985)
T TIGR01372 357 -----------------------------ARAEAR-------------ELGIEVLTGHVVAATE--G--GKRVSGVAVAR 390 (985)
T ss_pred -----------------------------HHHHHH-------------HcCCEEEcCCeEEEEe--c--CCcEEEEEEEe
Confidence 111121 5689999999888887 4 56676776653
Q ss_pred eeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcc--ccCC--CceeeccCCCCCcccCCeeeee
Q 014990 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV--PNIR--GRVLKNISGDSSQVENGLYVCG 387 (415)
Q Consensus 312 ~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~--~~~~--G~i~v~~~~~~~t~~p~vfaiG 387 (415)
. .+++++++||.|++++|++|+. .+....+.. .++. +++ -.|+.|+||++|
T Consensus 391 ~--------------~g~~~~i~~D~V~va~G~~Pnt----~L~~~lg~~~~~~~~~~~~~-------~~t~v~gVyaaG 445 (985)
T TIGR01372 391 N--------------GGAGQRLEADALAVSGGWTPVV----HLFSQRGGKLAWDAAIAAFL-------PGDAVQGCILAG 445 (985)
T ss_pred c--------------CCceEEEECCEEEEcCCcCchh----HHHHhcCCCeeeccccCcee-------cCCCCCCeEEee
Confidence 1 3455689999999999999976 333333322 2221 111 236799999999
Q ss_pred ccccCCccchhhhhhhHHHHHhhccc
Q 014990 388 WLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 388 D~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++ +..++. .|+.+|+.||..|..
T Consensus 446 D~~-g~~~~~-~A~~eG~~Aa~~i~~ 469 (985)
T TIGR01372 446 AAN-GLFGLA-AALADGAAAGAAAAR 469 (985)
T ss_pred ccC-CccCHH-HHHHHHHHHHHHHHH
Confidence 987 455555 699999999988753
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=210.85 Aligned_cols=281 Identities=19% Similarity=0.224 Sum_probs=199.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-------CCCCcchHHHHHHHHHHhhccCeEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHPETKIVINQFSRVVQHERCSF 89 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (415)
+..++|+||||||||.+||.+.+|+| .+.=++- .++||+..... .| +.+...+...+.+..+.+.+.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKG--iRTGl~a--erfGGQvldT~~IENfIsv~-~teGpkl~~ale~Hv~~Y~vDi 283 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKG--IRTGLVA--ERFGGQVLDTMGIENFISVP-ETEGPKLAAALEAHVKQYDVDV 283 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhc--chhhhhh--hhhCCeeccccchhheeccc-cccchHHHHHHHHHHhhcCchh
Confidence 46899999999999999999999999 8776663 34666543221 12 2233455667777777777765
Q ss_pred EeceEe-----------ceEEEeccccc-ccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCC
Q 014990 90 FGNVTL-----------GSSVSLSELRQ-LYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSP 154 (415)
Q Consensus 90 ~~~~~v-----------~~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~ 154 (415)
..-... -..+++.++-. ..+.+|++||+ .|+..++||.+ .+++-++.. ...
T Consensus 284 mn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA-rWRn~nvPGE~e~rnKGVayCPH-----CDG-------- 349 (520)
T COG3634 284 MNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA-RWRNMNVPGEDEYRNKGVAYCPH-----CDG-------- 349 (520)
T ss_pred hhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc-chhcCCCCchHHHhhCCeeeCCC-----CCC--------
Confidence 322211 11344555443 68899999999 89999999976 456655432 112
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCee
Q 014990 155 DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY 234 (415)
Q Consensus 155 ~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~ 234 (415)
.+.++|+|+|||||+||+|.|-+|+- -..+||++.=.+.+ +
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAG---------------------iv~hVtllEF~~eL---------k--------- 390 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEL---------K--------- 390 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHh---------------------hhheeeeeecchhh---------h---------
Confidence 24589999999999999999999984 23678776432211 0
Q ss_pred EEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee
Q 014990 235 VHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314 (415)
Q Consensus 235 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~ 314 (415)
.+..++.++ +. -.++.+..+..-+++. + +..+++++.+.+..
T Consensus 391 ------------------AD~VLq~kl----~s------------l~Nv~ii~na~Ttei~--G-dg~kV~Gl~Y~dr~- 432 (520)
T COG3634 391 ------------------ADAVLQDKL----RS------------LPNVTIITNAQTTEVK--G-DGDKVTGLEYRDRV- 432 (520)
T ss_pred ------------------hHHHHHHHH----hc------------CCCcEEEecceeeEEe--c-CCceecceEEEecc-
Confidence 011122111 11 3468889998889998 6 44788899887642
Q ss_pred cCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc
Q 014990 315 KGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT 394 (415)
Q Consensus 315 ~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~ 394 (415)
+|+...++.+-|++-+|.-||+ .|.+.. +.++++|.|.+|.. .+|+.|||||+|||...+.
T Consensus 433 ------------sge~~~l~LeGvFVqIGL~PNT----~WLkg~-vel~~rGEIivD~~--g~TsvpGvFAAGD~T~~~y 493 (520)
T COG3634 433 ------------SGEEHHLELEGVFVQIGLLPNT----EWLKGA-VELNRRGEIIVDAR--GETNVPGVFAAGDCTTVPY 493 (520)
T ss_pred ------------CCceeEEEeeeeEEEEecccCh----hHhhch-hhcCcCccEEEecC--CCcCCCceeecCcccCCcc
Confidence 6777789999999999999987 575544 78899999999997 8999999999999997775
Q ss_pred cchhhhhhhHHHHHhhcc
Q 014990 395 GIIATNLYCAEETVSSLS 412 (415)
Q Consensus 395 ~~~~~a~~~g~~~a~~i~ 412 (415)
+.+-.+|.+|..|+....
T Consensus 494 KQIIIamG~GA~AaL~AF 511 (520)
T COG3634 494 KQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ceEEEEecCcchhhhhhh
Confidence 444478999998886543
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=215.28 Aligned_cols=289 Identities=17% Similarity=0.230 Sum_probs=205.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CCccccCCCCCCc--chHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHP--ETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
..++++|||||++|.-|+.+++..++..+++|+-+...+ ..... + +... .......+..+..++.+++++.++.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~--L-s~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRAR--L-SKFLLTVGEGLAKRTPEFYKEKGIELILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchh--c-ccceeeccccccccChhhHhhcCceEEEcce
Confidence 477899999999999999999999988899999755432 21111 0 1110 1112222333457788999998887
Q ss_pred ec------eEEEeccccc-ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 014990 95 LG------SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (415)
Q Consensus 95 v~------~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~ 167 (415)
+. +.+.+.+++. .|++|+||||+ .++.|++||.+.+++.+..+....- .+..++...+.|+++|+
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs-~~~~l~~pG~~~~nv~~ireieda~-------~l~~~~~~~~~vV~vG~ 221 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGS-SAKTLDIPGVELKNVFYLREIEDAN-------RLVAAIQLGGKVVCVGG 221 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecC-ccccCCCCCccccceeeeccHHHHH-------HHHHHhccCceEEEECc
Confidence 63 3455555554 89999999999 8899999999988888766543211 11112335788999999
Q ss_pred ChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCC
Q 014990 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (415)
Q Consensus 168 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 247 (415)
|..|+|++.+|.. ...+||++.+.+.....++.
T Consensus 222 G~ig~Evaa~l~~---------------------~~~~VT~V~~e~~~~~~lf~-------------------------- 254 (478)
T KOG1336|consen 222 GFIGMEVAAALVS---------------------KAKSVTVVFPEPWLLPRLFG-------------------------- 254 (478)
T ss_pred hHHHHHHHHHHHh---------------------cCceEEEEccCccchhhhhh--------------------------
Confidence 9999999999985 56899999998754322222
Q ss_pred cHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccC
Q 014990 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~ 327 (415)
+.+++...+.+. ++||++..++.+.++. ...+|++..|.+.+
T Consensus 255 -------~~i~~~~~~y~e-------------~kgVk~~~~t~~s~l~--~~~~Gev~~V~l~d---------------- 296 (478)
T KOG1336|consen 255 -------PSIGQFYEDYYE-------------NKGVKFYLGTVVSSLE--GNSDGEVSEVKLKD---------------- 296 (478)
T ss_pred -------HHHHHHHHHHHH-------------hcCeEEEEecceeecc--cCCCCcEEEEEecc----------------
Confidence 233344444443 7799999999999887 43457776665543
Q ss_pred CceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc---------cchh
Q 014990 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GIIA 398 (415)
Q Consensus 328 g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---------~~~~ 398 (415)
+.+++||+|+.++|.+|++ ++... +..++..|.+.||.. ++|++|||||+||+++-+- ....
T Consensus 297 --g~~l~adlvv~GiG~~p~t----~~~~~-g~~~~~~G~i~V~~~--f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~ 367 (478)
T KOG1336|consen 297 --GKTLEADLVVVGIGIKPNT----SFLEK-GILLDSKGGIKVDEF--FQTSVPNVYAIGDVATFPLKGYGEDRRVEHVD 367 (478)
T ss_pred --CCEeccCeEEEeecccccc----ccccc-cceecccCCEeehhc--eeeccCCcccccceeecccccccccccchHHH
Confidence 2389999999999999977 34444 788899999999997 8999999999999985331 2233
Q ss_pred hhhhhHHHHHhhc
Q 014990 399 TNLYCAEETVSSL 411 (415)
Q Consensus 399 ~a~~~g~~~a~~i 411 (415)
.|..+|..+...|
T Consensus 368 ~A~~~g~~av~ai 380 (478)
T KOG1336|consen 368 HARASGRQAVKAI 380 (478)
T ss_pred HHHHHHHhhhhhh
Confidence 5677777655554
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=218.55 Aligned_cols=273 Identities=19% Similarity=0.229 Sum_probs=175.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-------------------------------
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV------------------------------- 64 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~------------------------------- 64 (415)
....++|+|||||+|||+||.+|++.| .+|++||+++.+||.+.+.-
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 346789999999999999999999999 99999999999999876520
Q ss_pred ------CCC-------------CcchHHHHHHHHHHhhccCeE--EEeceEece--------EEEeccc-----ccccCE
Q 014990 65 ------APD-------------HPETKIVINQFSRVVQHERCS--FFGNVTLGS--------SVSLSEL-----RQLYHV 110 (415)
Q Consensus 65 ------~~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~--------~v~~~~~-----~~~~d~ 110 (415)
.|. ++...++.+++..++++.++. ++.++.|.. .++.... ...||+
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~ 164 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDA 164 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCE
Confidence 011 112256788888888888876 666666522 2333211 235899
Q ss_pred EEEccCC-CCCCCCCCCCCC-CCC-eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccc
Q 014990 111 VVLAYGA-ESDRALGIPGED-LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187 (415)
Q Consensus 111 lvlAtG~-~~~~~~~i~g~~-~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~ 187 (415)
||+|||. ..|+.|++||.+ .++ +.++..+.. + ....+|+|+|||+|.||+|+|.+|.+
T Consensus 165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~-----~-------~~~~gk~VvVVG~G~Sg~diA~~L~~------- 225 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRV-----P-------DPFKNEVVVVIGNFASGADISRDIAK------- 225 (461)
T ss_pred EEEeccCCCCCcCCCCCCcccCCceEEEecccCC-----c-------cccCCCEEEEECCCcCHHHHHHHHHH-------
Confidence 9999996 368899999975 333 344443331 1 12379999999999999999999996
Q ss_pred cCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHH
Q 014990 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSK 267 (415)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 267 (415)
.+++|++++|+..... . +. ++
T Consensus 226 --------------~a~~V~l~~r~~~~~~------~-~~-----------------~~--------------------- 246 (461)
T PLN02172 226 --------------VAKEVHIASRASESDT------Y-EK-----------------LP--------------------- 246 (461)
T ss_pred --------------hCCeEEEEEeeccccc------c-cc-----------------Cc---------------------
Confidence 5679999999753210 0 00 00
Q ss_pred HHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCc
Q 014990 268 AAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSV 347 (415)
Q Consensus 268 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~ 347 (415)
....++.....+..+. . ++ .|.+. +|+ .+++|.||+|||++++
T Consensus 247 ------------~~~~~v~~~~~I~~~~--~--~g---~V~f~----------------DG~--~~~~D~Ii~~TGy~~~ 289 (461)
T PLN02172 247 ------------VPQNNLWMHSEIDTAH--E--DG---SIVFK----------------NGK--VVYADTIVHCTGYKYH 289 (461)
T ss_pred ------------CCCCceEECCccccee--c--CC---eEEEC----------------CCC--CccCCEEEECCcCCcc
Confidence 0011222333344443 2 33 24443 233 5789999999999995
Q ss_pred cCCCCcccCCCCccccCCCce-eeccCCCCCcc-cCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 348 PVNGLPFDNHKGIVPNIRGRV-LKNISGDSSQV-ENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 348 ~~~~~~~~~~~g~~~~~~G~i-~v~~~~~~~t~-~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
. ||....+....+++++ ..-.+. +... .|+++++|=...+.. +.....|++++|.-+.
T Consensus 290 ~----pfL~~~~~i~v~~~~v~~Ly~~~-f~~~~~p~LafiG~~~~~~~--f~~~E~Qa~~~a~v~s 349 (461)
T PLN02172 290 F----PFLETNGYMRIDENRVEPLYKHV-FPPALAPGLSFIGLPAMGIQ--FVMFEIQSKWVAAVLS 349 (461)
T ss_pred c----cccCcccceeeCCCcchhhHHhh-cCCCCCCcEEEEeccccccC--chhHHHHHHHHHHHHc
Confidence 4 5655433222222332 122222 3344 499999996533322 2357899999997654
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=198.60 Aligned_cols=285 Identities=17% Similarity=0.220 Sum_probs=192.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCC----------------------------C
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAP----------------------------D 67 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~----------------------------~ 67 (415)
.+.++.+|||||.+|+++|.+.+..| .++.|+|..-.+||. ..+|+.| .
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcC--ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 46789999999999999999999999 999999987555553 1222111 1
Q ss_pred Ccch------HHHHHHH----HHHhhccCeEEEeceEe-----ceEEEecccc---cccCEEEEccCCCCCCCCCCCCCC
Q 014990 68 HPET------KIVINQF----SRVVQHERCSFFGNVTL-----GSSVSLSELR---QLYHVVVLAYGAESDRALGIPGED 129 (415)
Q Consensus 68 ~~~~------~~~~~~~----~~~~~~~~~~~~~~~~v-----~~~v~~~~~~---~~~d~lvlAtG~~~~~~~~i~g~~ 129 (415)
+.+. ++...++ ...+...++.++.+... .-++...+.. ..++++++|||. .|.+|+|||.+
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg-~p~~PnIpG~E 174 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGG-RPIIPNIPGAE 174 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCC-ccCCCCCCchh
Confidence 1111 1122222 23334445666665432 1123333443 367899999999 78888999976
Q ss_pred CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEE
Q 014990 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (415)
Q Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 209 (415)
.. .++..|+. . -..+|+++|||+|++++|+|.-+.. .| .+++++
T Consensus 175 ~g--idSDgff~----L---------ee~Pkr~vvvGaGYIavE~Agi~~g--------------------Lg-sethlf 218 (478)
T KOG0405|consen 175 LG--IDSDGFFD----L---------EEQPKRVVVVGAGYIAVEFAGIFAG--------------------LG-SETHLF 218 (478)
T ss_pred hc--cccccccc----h---------hhcCceEEEEccceEEEEhhhHHhh--------------------cC-CeeEEE
Confidence 32 12222221 0 1158999999999999999999985 55 489999
Q ss_pred eecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecc
Q 014990 210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (415)
Q Consensus 210 ~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~ 289 (415)
.|....+..|.. .++.. +.+.+ ..+||++|.++
T Consensus 219 iR~~kvLR~FD~-~i~~~---------------------------------v~~~~-------------~~~ginvh~~s 251 (478)
T KOG0405|consen 219 IRQEKVLRGFDE-MISDL---------------------------------VTEHL-------------EGRGINVHKNS 251 (478)
T ss_pred EecchhhcchhH-HHHHH---------------------------------HHHHh-------------hhcceeecccc
Confidence 998766544432 11111 11222 26789999999
Q ss_pred ccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCcee
Q 014990 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (415)
Q Consensus 290 ~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~ 369 (415)
++++++ ...++... + ... .+ ..-++|.++||+|..|+. .++.+ +..|+.++.+|.|.
T Consensus 252 ~~~~v~--K~~~g~~~-~-i~~---------------~~--~i~~vd~llwAiGR~Pnt-k~L~l-e~vGVk~~~~g~Ii 308 (478)
T KOG0405|consen 252 SVTKVI--KTDDGLEL-V-ITS---------------HG--TIEDVDTLLWAIGRKPNT-KGLNL-ENVGVKTDKNGAII 308 (478)
T ss_pred cceeee--ecCCCceE-E-EEe---------------cc--ccccccEEEEEecCCCCc-ccccc-hhcceeeCCCCCEE
Confidence 999987 21232111 1 111 22 245599999999999976 44544 56789999999999
Q ss_pred eccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 370 v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|++ +.|++|+||++||+. +.-.++..|...|+..|.++..
T Consensus 309 vDeY--q~Tnvp~I~avGDv~-gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 309 VDEY--QNTNVPSIWAVGDVT-GKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred Eecc--ccCCCCceEEecccc-CcEecchHHHhhhhhHHHHhhc
Confidence 9998 899999999999987 4555677899999999988753
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=208.77 Aligned_cols=313 Identities=15% Similarity=0.145 Sum_probs=194.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCcchHHHHHHHHHHhhccC--eEEEece
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETKIVINQFSRVVQHER--CSFFGNV 93 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 93 (415)
.++++|||+|.|.+|.+++..|-... ++|++|++.+++-- .+.....-+-.+.+.+.++.+...+..+ +++....
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe 130 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE 130 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccc--cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc
Confidence 46889999999999999999999887 99999999876422 2222222244466777788777776653 4444332
Q ss_pred Ee-----ceEEEec-----c----cccccCEEEEccCCCCCCCCCCCCCC-----CCCeeechhhHHHhcCCCCCCCC--
Q 014990 94 TL-----GSSVSLS-----E----LRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVWWYNGHPDGKNL-- 152 (415)
Q Consensus 94 ~v-----~~~v~~~-----~----~~~~~d~lvlAtG~~~~~~~~i~g~~-----~~~v~~~~~~~~~~~~~~~~~~~-- 152 (415)
.+ .+.+.++ . ....|||||+|+|+ .+..+++||.. .+.+.++.+....+-...+...+
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA-~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~ 209 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGA-EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPG 209 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccC-CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Confidence 22 1122222 1 23479999999999 78888999865 44455665554433221111111
Q ss_pred -C-CCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcC
Q 014990 153 -S-PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI 230 (415)
Q Consensus 153 -~-~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~ 230 (415)
. .....--+++|||||++|+|+|.+|+. +-..|+.++.-.. ...-+||++...+.++.
T Consensus 210 l~~eerkRlLh~VVVGGGPTGVEFAaEL~D----fi~~Dl~k~yp~l---~~~i~vtLiEA~d~iL~------------- 269 (491)
T KOG2495|consen 210 LSDEERKRLLHFVVVGGGPTGVEFAAELAD----FIPEDLRKIYPEL---KKDIKVTLIEAADHILN------------- 269 (491)
T ss_pred CChHHhhheEEEEEECCCCcceeehHHHHH----HHHHHHHHhhhcc---hhheEEEeeccchhHHH-------------
Confidence 0 011122479999999999999999985 1111111111000 11125666655544322
Q ss_pred CCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEe
Q 014990 231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (415)
Q Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~ 310 (415)
+..+++.+...+... +.+|.++.++.+..+. + . .+...
T Consensus 270 -------------------------mFdkrl~~yae~~f~---------~~~I~~~~~t~Vk~V~--~---~---~I~~~ 307 (491)
T KOG2495|consen 270 -------------------------MFDKRLVEYAENQFV---------RDGIDLDTGTMVKKVT--E---K---TIHAK 307 (491)
T ss_pred -------------------------HHHHHHHHHHHHHhh---------hccceeecccEEEeec--C---c---EEEEE
Confidence 222233333333322 6789999988888875 2 2 23222
Q ss_pred eeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCC--ceeeccCCCCCcccCCeeeeec
Q 014990 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG--RVLKNISGDSSQVENGLYVCGW 388 (415)
Q Consensus 311 ~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G--~i~v~~~~~~~t~~p~vfaiGD 388 (415)
. .+|+.++|++-+++|+||..|.++ .....-..++.| .+.+|+++ ...+.+||||+||
T Consensus 308 ~--------------~~g~~~~iPYG~lVWatG~~~rp~-----~k~lm~~i~e~~rr~L~vDE~L-rV~G~~nvfAiGD 367 (491)
T KOG2495|consen 308 T--------------KDGEIEEIPYGLLVWATGNGPRPV-----IKDLMKQIDEQGRRGLAVDEWL-RVKGVKNVFAIGD 367 (491)
T ss_pred c--------------CCCceeeecceEEEecCCCCCchh-----hhhHhhcCCccCceeeeeecee-eccCcCceEEecc
Confidence 2 146667999999999999998552 222222344555 78899987 7889999999999
Q ss_pred cccCC--ccchhhhhhhHHHHHhhcccc
Q 014990 389 LKRGP--TGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 389 ~~~~~--~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|+..+ ......|..||+.+|+++.++
T Consensus 368 ca~~~~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 368 CADQRGLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHH
Confidence 98322 223457999999999988764
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=186.16 Aligned_cols=288 Identities=18% Similarity=0.233 Sum_probs=196.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC----CCCCCcccc----CCCCCCc---chHHHHHHHHHHhhccCe
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL----PTPFGLVRS----GVAPDHP---ETKIVINQFSRVVQHERC 87 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~----~~~gg~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~ 87 (415)
..+|+|||.|||+..+|++++|.. .+-+|||.. ..+||++.- ...|+++ .-.++.+.++++..+.+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 458999999999999999999997 999999975 235665431 1234444 345778889999999999
Q ss_pred EEEeceEeceE-------EEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCC
Q 014990 88 SFFGNVTLGSS-------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 88 ~~~~~~~v~~~-------v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k 160 (415)
+++.+++-.-+ +-.+.....+|.||+|||+ ..+.+-+||.-... +...-...+ ..++. ...+..+|
T Consensus 86 ~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGA-sAkRl~~pg~ge~~-fWqrGiSaC--AVCDG---aapifrnk 158 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWTDARPVTADAVILATGA-SAKRLHLPGEGEGE-FWQRGISAC--AVCDG---AAPIFRNK 158 (322)
T ss_pred eeeeeehhhccccCCCeEEEecCCceeeeeEEEeccc-ceeeeecCCCCcch-HHhcccchh--hcccC---cchhhcCC
Confidence 88877653221 2223334578999999999 55666777762111 111110000 00111 11245899
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
..+|||||.+++|-|..|.+ -+.+|++++|++.++++
T Consensus 159 ~laVIGGGDsA~EEA~fLtk---------------------yaskVyii~Rrd~fRAs---------------------- 195 (322)
T KOG0404|consen 159 PLAVIGGGDSAMEEALFLTK---------------------YASKVYIIHRRDHFRAS---------------------- 195 (322)
T ss_pred eeEEEcCcHHHHHHHHHHHh---------------------hccEEEEEEEhhhhhHH----------------------
Confidence 99999999999999999996 34799999999764210
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
..+++-. ....+|.++++....+.. . +...+.+++++++.
T Consensus 196 ----------------------~~Mq~ra--------~~npnI~v~~nt~~~ea~--g-d~~~l~~l~ikn~~------- 235 (322)
T KOG0404|consen 196 ----------------------KIMQQRA--------EKNPNIEVLYNTVAVEAL--G-DGKLLNGLRIKNVK------- 235 (322)
T ss_pred ----------------------HHHHHHH--------hcCCCeEEEechhhhhhc--c-CcccccceEEEecc-------
Confidence 0111110 125579999999888887 5 34667888887752
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
+|+...++++-+++++|..|++ .|.+. .+.++++|++++.+-+ ..||+||+||+||+-...-...-.|
T Consensus 236 ------tge~~dl~v~GlFf~IGH~Pat----~~l~g-qve~d~~GYi~t~pgt-s~TsvpG~FAAGDVqD~kyRQAvTa 303 (322)
T KOG0404|consen 236 ------TGEETDLPVSGLFFAIGHSPAT----KFLKG-QVELDEDGYIVTRPGT-SLTSVPGVFAAGDVQDKKYRQAVTA 303 (322)
T ss_pred ------cCcccccccceeEEEecCCchh----hHhcC-ceeeccCceEEeccCc-ccccccceeeccccchHHHHHHHhh
Confidence 6777899999999999999977 34332 5788999999999766 7899999999999864221112135
Q ss_pred hhhHHHHHhh
Q 014990 401 LYCAEETVSS 410 (415)
Q Consensus 401 ~~~g~~~a~~ 410 (415)
...|.++|..
T Consensus 304 AgsGciaald 313 (322)
T KOG0404|consen 304 AGSGCIAALD 313 (322)
T ss_pred hccchhhhhh
Confidence 5555555543
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=215.40 Aligned_cols=274 Identities=16% Similarity=0.186 Sum_probs=179.3
Q ss_pred HHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCC-----cchHHHHHH-HHHHhhccCeEEEeceEece------EEE
Q 014990 33 YTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----PETKIVINQ-FSRVVQHERCSFFGNVTLGS------SVS 100 (415)
Q Consensus 33 ~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~------~v~ 100 (415)
+||.+|++.+++.+|+|||+++.++- ..+++ |.+ ....+.... ...+++..+++++.+..+.. .+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~-~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF-ANCGL-PYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE-EcCCC-CeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 47899998887899999999986532 11122 211 112222222 23344667888876655521 222
Q ss_pred ecc----cccc--cCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHH--hcCCCCCCCCCCCCCCCCeEEEEcCChhHH
Q 014990 101 LSE----LRQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 101 ~~~----~~~~--~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
+.. .... ||+||||||+ .|+.|++||.+.+++++....... +..... ...+++|+|||+|++|+
T Consensus 79 ~~~~~~~~~~~~~yd~lIiATG~-~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~-------~~~~~~vvViGgG~~g~ 150 (427)
T TIGR03385 79 VRNNKTNETYEESYDYLILSPGA-SPIVPNIEGINLDIVFTLRNLEDTDAIKQYID-------KNKVENVVIIGGGYIGI 150 (427)
T ss_pred EEECCCCCEEecCCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHh-------hcCCCeEEEECCCHHHH
Confidence 221 1234 9999999999 778889999876666654432211 111000 01578999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
|+|..|.+ .+ .+|+++.+++.+......+++
T Consensus 151 e~A~~l~~--------------------~g-~~Vtli~~~~~~~~~~~~~~~---------------------------- 181 (427)
T TIGR03385 151 EMAEALRE--------------------RG-KNVTLIHRSERILNKLFDEEM---------------------------- 181 (427)
T ss_pred HHHHHHHh--------------------CC-CcEEEEECCcccCccccCHHH----------------------------
Confidence 99999985 33 479999988654211111111
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEE
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFED 332 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~ 332 (415)
...+.+.+. +.||+++++..+.++. . ++.+ +.+. +| ++
T Consensus 182 -----~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~--~~~~--v~~~----------------~g--~~ 219 (427)
T TIGR03385 182 -----NQIVEEELK-------------KHEINLRLNEEVDSIE--G--EERV--KVFT----------------SG--GV 219 (427)
T ss_pred -----HHHHHHHHH-------------HcCCEEEeCCEEEEEe--c--CCCE--EEEc----------------CC--CE
Confidence 111222222 5689999999888886 3 3322 2221 22 26
Q ss_pred EecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---------ccchhhhhhh
Q 014990 333 LDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---------TGIIATNLYC 403 (415)
Q Consensus 333 i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~---------~~~~~~a~~~ 403 (415)
+++|.+|||+|++|+. ++....++.++++|++.+|+. ++|+.|||||+|||+..+ ......|+.|
T Consensus 220 i~~D~vi~a~G~~p~~----~~l~~~gl~~~~~G~i~vd~~--~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 293 (427)
T TIGR03385 220 YQADMVILATGIKPNS----ELAKDSGLKLGETGAIWVNEK--FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKM 293 (427)
T ss_pred EEeCEEEECCCccCCH----HHHHhcCcccCCCCCEEECCC--cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHH
Confidence 9999999999999975 355666778888899999987 789999999999998532 1244579999
Q ss_pred HHHHHhhccc
Q 014990 404 AEETVSSLSL 413 (415)
Q Consensus 404 g~~~a~~i~~ 413 (415)
|+.+|.+|..
T Consensus 294 g~~~a~ni~g 303 (427)
T TIGR03385 294 GRIAGENIAG 303 (427)
T ss_pred HHHHHHHhcC
Confidence 9999999864
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-24 Score=212.75 Aligned_cols=291 Identities=19% Similarity=0.276 Sum_probs=204.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-CceEEEEcCCCCCCC--ccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFG--LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~~~v~lie~~~~~gg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
.+.+++|||-|.||..+...+++..| .++|++|-..+++.- .....+.++....+++...-.....+.+++++.+..
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~ 81 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEK 81 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCe
Confidence 35789999999999999999999553 379999977665421 111122244334455555555667778999988876
Q ss_pred e------ceEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 014990 95 L------GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (415)
Q Consensus 95 v------~~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~ 167 (415)
+ .+.++.+.+. ..||.||+|||| .|..+|+||.+.++++....+-....... .....++-+|||+
T Consensus 82 v~~idr~~k~V~t~~g~~~~YDkLilATGS-~pfi~PiPG~~~~~v~~~R~i~D~~am~~-------~ar~~~~avVIGG 153 (793)
T COG1251 82 VIQIDRANKVVTTDAGRTVSYDKLIIATGS-YPFILPIPGSDLPGVFVYRTIDDVEAMLD-------CARNKKKAVVIGG 153 (793)
T ss_pred eEEeccCcceEEccCCcEeecceeEEecCc-cccccCCCCCCCCCeeEEecHHHHHHHHH-------HHhccCCcEEEcc
Confidence 5 2345555554 489999999999 88888999999888876544332211110 0114566899999
Q ss_pred ChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCC
Q 014990 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (415)
Q Consensus 168 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 247 (415)
|..|+|+|..|.. ..-++++++-++.+-
T Consensus 154 GLLGlEaA~~L~~---------------------~Gm~~~Vvh~~~~lM------------------------------- 181 (793)
T COG1251 154 GLLGLEAARGLKD---------------------LGMEVTVVHIAPTLM------------------------------- 181 (793)
T ss_pred chhhhHHHHHHHh---------------------CCCceEEEeecchHH-------------------------------
Confidence 9999999999986 334677776654321
Q ss_pred cHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccC
Q 014990 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~ 327 (415)
..++.+..-++|+... .+.|+.++++....++. . .+.+.+++|.+
T Consensus 182 ------erQLD~~ag~lL~~~l---------e~~Gi~~~l~~~t~ei~--g--~~~~~~vr~~D---------------- 226 (793)
T COG1251 182 ------ERQLDRTAGRLLRRKL---------EDLGIKVLLEKNTEEIV--G--EDKVEGVRFAD---------------- 226 (793)
T ss_pred ------HHhhhhHHHHHHHHHH---------Hhhcceeecccchhhhh--c--CcceeeEeecC----------------
Confidence 0111222223333222 27899999988888887 4 67777787764
Q ss_pred CceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc--C-CccchhhhhhhH
Q 014990 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR--G-PTGIIATNLYCA 404 (415)
Q Consensus 328 g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~--~-~~~~~~~a~~~g 404 (415)
|. .+++|+|+||+|++||. .+...+|+.+++ |.+..|. ++||.|+|||+|.|+. + --++++.+..|+
T Consensus 227 G~--~i~ad~VV~a~GIrPn~----ela~~aGlavnr-GIvvnd~---mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~ 296 (793)
T COG1251 227 GT--EIPADLVVMAVGIRPND----ELAKEAGLAVNR-GIVVNDY---MQTSDPDIYAVGECAEHRGKVYGLVAPLYEQA 296 (793)
T ss_pred CC--cccceeEEEeccccccc----HhHHhcCcCcCC-Ceeeccc---ccccCCCeeehhhHHHhcCccceehhHHHHHH
Confidence 22 79999999999999976 566788888886 6665554 9999999999999984 2 247777899999
Q ss_pred HHHHhhccc
Q 014990 405 EETVSSLSL 413 (415)
Q Consensus 405 ~~~a~~i~~ 413 (415)
+++|.++..
T Consensus 297 ~v~a~hl~~ 305 (793)
T COG1251 297 KVLADHLCG 305 (793)
T ss_pred HHHHHHhcc
Confidence 999999864
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=191.38 Aligned_cols=288 Identities=19% Similarity=0.288 Sum_probs=189.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCcchHH-----------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETKI----------------------- 73 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~~~~~----------------------- 73 (415)
..++|+|||+||+|.-||...++.| .+.+++|++..+||. +..|+.|.+.....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhc--ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 5799999999999999999999999 999999999888875 34444454322110
Q ss_pred ----------------HHHHHHHHhhccCeEEEeceEe--c-eE--EEeccc---ccccCEEEEccCCCCCCCCCCCCCC
Q 014990 74 ----------------VINQFSRVVQHERCSFFGNVTL--G-SS--VSLSEL---RQLYHVVVLAYGAESDRALGIPGED 129 (415)
Q Consensus 74 ----------------~~~~~~~~~~~~~~~~~~~~~v--~-~~--v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~ 129 (415)
+..-+..+++..++.++.+..- + .. ++..++ .+.++++|+|||+ ..+++||.+
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGS---eV~~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGS---EVTPFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCC---ccCCCCCeE
Confidence 0011223333444444433221 1 01 122222 2368899999998 223566754
Q ss_pred --CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEE
Q 014990 130 --LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (415)
Q Consensus 130 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (415)
.+.+.++..-+. + -+-+++.+|||+|.+|+|+..-..+ +|. +||
T Consensus 193 IDekkIVSStgALs-L------------~~vPk~~~viG~G~IGLE~gsV~~r--------------------LGs-eVT 238 (506)
T KOG1335|consen 193 IDEKKIVSSTGALS-L------------KEVPKKLTVIGAGYIGLEMGSVWSR--------------------LGS-EVT 238 (506)
T ss_pred ecCceEEecCCccc-h------------hhCcceEEEEcCceeeeehhhHHHh--------------------cCC-eEE
Confidence 444555432211 0 1258999999999999999988886 564 788
Q ss_pred EEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEe
Q 014990 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (415)
Q Consensus 208 l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 287 (415)
++.--+.+- +..+.++. +...+.|. ..|+.|++
T Consensus 239 ~VEf~~~i~-----------------------------~~mD~Eis-----k~~qr~L~-------------kQgikF~l 271 (506)
T KOG1335|consen 239 VVEFLDQIG-----------------------------GVMDGEIS-----KAFQRVLQ-------------KQGIKFKL 271 (506)
T ss_pred EEEehhhhc-----------------------------cccCHHHH-----HHHHHHHH-------------hcCceeEe
Confidence 876544332 11112221 22222332 56899999
Q ss_pred ccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCc
Q 014990 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGR 367 (415)
Q Consensus 288 ~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~ 367 (415)
++.+.... .+.++.+ .+++.+. .+++.++++||++++++|.+|.. .++.+ +..|+..|.+|+
T Consensus 272 ~tkv~~a~--~~~dg~v-~i~ve~a-------------k~~k~~tle~DvlLVsiGRrP~t-~GLgl-e~iGi~~D~r~r 333 (506)
T KOG1335|consen 272 GTKVTSAT--RNGDGPV-EIEVENA-------------KTGKKETLECDVLLVSIGRRPFT-EGLGL-EKIGIELDKRGR 333 (506)
T ss_pred ccEEEEee--ccCCCce-EEEEEec-------------CCCceeEEEeeEEEEEccCcccc-cCCCh-hhcccccccccc
Confidence 99988886 3234433 3444332 15677899999999999999954 55655 456888899999
Q ss_pred eeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 368 VLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 368 i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
+.++.. ++|.+|+||+|||+..+|-. ...|..||=.+.+.|.
T Consensus 334 v~v~~~--f~t~vP~i~~IGDv~~gpML-AhkAeeegI~~VE~i~ 375 (506)
T KOG1335|consen 334 VIVNTR--FQTKVPHIYAIGDVTLGPML-AHKAEEEGIAAVEGIA 375 (506)
T ss_pred eecccc--ccccCCceEEecccCCcchh-hhhhhhhchhheeeec
Confidence 999987 88999999999999977753 3357777777766553
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=208.22 Aligned_cols=162 Identities=25% Similarity=0.319 Sum_probs=112.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-----------------------C---------C
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-----------------------A---------P 66 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-----------------------~---------~ 66 (415)
+++|+|||||++||++|..|.+.| .++++||+++.+||.+.+.- . |
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 479999999999999999999999 99999999999999986421 1 1
Q ss_pred CCcchHHHHHHHHHHhhccCe--EEEeceEece-------------EEEecc-c---ccccCEEEEccCC-CCCCCCC--
Q 014990 67 DHPETKIVINQFSRVVQHERC--SFFGNVTLGS-------------SVSLSE-L---RQLYHVVVLAYGA-ESDRALG-- 124 (415)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~-------------~v~~~~-~---~~~~d~lvlAtG~-~~~~~~~-- 124 (415)
.++...++.+++...++++++ .+++++.|.. .++... + ...||+||+|||. ..|..|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 122335788899999888775 3666666522 233322 1 1258999999997 4577774
Q ss_pred CCCCC--CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC
Q 014990 125 IPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (415)
Q Consensus 125 i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (415)
+||.+ ...+.|+.+|.... ...+|+|+|||+|.||+|+|.+|++ .
T Consensus 159 ~~G~e~F~G~i~HS~~yr~~~------------~f~gKrVlVVG~g~Sg~DIa~el~~---------------------~ 205 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRDPE------------PFKGKRVLVVGGGNSGADIAVELSR---------------------V 205 (531)
T ss_dssp -CTGGGHCSEEEEGGG--TGG------------GGTTSEEEEESSSHHHHHHHHHHTT---------------------T
T ss_pred hhhhhcCCeeEEccccCcChh------------hcCCCEEEEEeCCHhHHHHHHHHHH---------------------h
Confidence 88976 45677887765321 2379999999999999999999996 5
Q ss_pred cceEEEEeecCcc
Q 014990 203 IRKVYLVGRRGPV 215 (415)
Q Consensus 203 ~~~v~l~~r~~~~ 215 (415)
+++|++..|+..+
T Consensus 206 a~~v~~s~R~~~w 218 (531)
T PF00743_consen 206 AKKVYLSTRRGAW 218 (531)
T ss_dssp SCCEEEECC----
T ss_pred cCCeEEEEecccc
Confidence 6899999998543
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-23 Score=189.80 Aligned_cols=294 Identities=20% Similarity=0.275 Sum_probs=185.8
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC---CC-----CCCc-cccCCCCCCcc--------------
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---PT-----PFGL-VRSGVAPDHPE-------------- 70 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~---~~-----~gg~-~~~~~~~~~~~-------------- 70 (415)
......++++|||||.+||+||...+..| .+|.++|-- +. +||. ..-|.+|.+.+
T Consensus 14 ~~~sydyDLIviGgGSgGLacaKeAa~~G--~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~ 91 (503)
T KOG4716|consen 14 LFSSYDYDLIVIGGGSGGLACAKEAADLG--AKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDAR 91 (503)
T ss_pred hcccCCccEEEEcCCcchhhHHHHHHhcC--CcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999 999998742 21 1221 11122221100
Q ss_pred ----------h----HHHHHHHHHHhhccC----eEEEeceEe-----ce-------EEEecccc---cccCEEEEccCC
Q 014990 71 ----------T----KIVINQFSRVVQHER----CSFFGNVTL-----GS-------SVSLSELR---QLYHVVVLAYGA 117 (415)
Q Consensus 71 ----------~----~~~~~~~~~~~~~~~----~~~~~~~~v-----~~-------~v~~~~~~---~~~d~lvlAtG~ 117 (415)
. ....+..+..++..| +.++..... +. ..+...++ ..++.+|+|||.
T Consensus 92 kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~ 171 (503)
T KOG4716|consen 92 KYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL 171 (503)
T ss_pred hhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC
Confidence 0 011222233333322 111111111 00 11222222 257899999999
Q ss_pred CCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHH
Q 014990 118 ESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197 (415)
Q Consensus 118 ~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~ 197 (415)
+|+.|+|||...-++.+ .+.+. + -+.+.+.+|||+|++++|||.+|.-
T Consensus 172 -RPrYp~IpG~~Ey~ITS-DDlFs-l------------~~~PGkTLvVGa~YVaLECAgFL~g----------------- 219 (503)
T KOG4716|consen 172 -RPRYPDIPGAKEYGITS-DDLFS-L------------PYEPGKTLVVGAGYVALECAGFLKG----------------- 219 (503)
T ss_pred -CCCCCCCCCceeeeecc-ccccc-c------------cCCCCceEEEccceeeeehhhhHhh-----------------
Confidence 89999999975333332 22221 1 1135567889999999999999984
Q ss_pred hhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCC
Q 014990 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM 277 (415)
Q Consensus 198 ~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (415)
.| -+|++..||-.++ .+.+++ .+.+..++.
T Consensus 220 ---fg-~~vtVmVRSI~Lr------------------------------GFDqdm---------ae~v~~~m~------- 249 (503)
T KOG4716|consen 220 ---FG-YDVTVMVRSILLR------------------------------GFDQDM---------AELVAEHME------- 249 (503)
T ss_pred ---cC-CCcEEEEEEeecc------------------------------cccHHH---------HHHHHHHHH-------
Confidence 44 4899999985431 111222 223333322
Q ss_pred CCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCC
Q 014990 278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH 357 (415)
Q Consensus 278 ~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~ 357 (415)
.+||+|.....|.++. .-+++.+ .|...++. ++++.+-++|+|+||+|..+.. ..+.+ +.
T Consensus 250 --~~Gikf~~~~vp~~Ve--q~~~g~l-~v~~k~t~-------------t~~~~~~~ydTVl~AiGR~~~~-~~l~L-~~ 309 (503)
T KOG4716|consen 250 --ERGIKFLRKTVPERVE--QIDDGKL-RVFYKNTN-------------TGEEGEEEYDTVLWAIGRKALT-DDLNL-DN 309 (503)
T ss_pred --HhCCceeecccceeee--eccCCcE-EEEeeccc-------------ccccccchhhhhhhhhccccch-hhcCC-Cc
Confidence 7799999888888775 3134543 23333321 3444467799999999999854 33434 45
Q ss_pred CCccccCC-CceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 358 KGIVPNIR-GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 358 ~g~~~~~~-G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.|+..|++ |.|.+|.. .+|+.|+|||+||+..+...++..|+..|+..|.+|..
T Consensus 310 ~GVk~n~ks~KI~v~~~--e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 310 AGVKTNEKSGKIPVDDE--EATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred cceeecccCCccccChH--HhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence 57777554 88999887 78999999999999988888888999999999998865
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-19 Score=160.71 Aligned_cols=156 Identities=25% Similarity=0.296 Sum_probs=102.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCCCCCccccC------CCCC---------------------------C
Q 014990 23 CVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSG------VAPD---------------------------H 68 (415)
Q Consensus 23 vIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~~gg~~~~~------~~~~---------------------------~ 68 (415)
+|||||||||++|.+|.+.+ .+ ++|||+++.+|+.+... ..|. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 69999999999999999999 88 99999999888865420 0010 1
Q ss_pred cchHHHHHHHHHHhhccCeEEEeceEece--------EEEeccc-ccccCEEEEccCC-CCCCCCCCCC-CCCCCeeech
Q 014990 69 PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGA-ESDRALGIPG-EDLIGVHSAR 137 (415)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~~-~~~~d~lvlAtG~-~~~~~~~i~g-~~~~~v~~~~ 137 (415)
+...++.+++...++++++++++++.|.. .++.++. ...+|+||+|||. ..|+.|+++| .+. ..++..
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~ 157 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSA 157 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehh
Confidence 12235667888888888888888877632 3555555 4579999999997 4688899999 434 455554
Q ss_pred hhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
++.... ...+|+|+|||+|.||+|++..|.+ .+ ++|++++|++.
T Consensus 158 ~~~~~~------------~~~~k~V~VVG~G~SA~d~a~~l~~--------------------~g-~~V~~~~R~~~ 201 (203)
T PF13738_consen 158 DWRDPE------------DFKGKRVVVVGGGNSAVDIAYALAK--------------------AG-KSVTLVTRSPI 201 (203)
T ss_dssp G-STTG------------GCTTSEEEEE--SHHHHHHHHHHTT--------------------TC-SEEEEEESS--
T ss_pred hcCChh------------hcCCCcEEEEcChHHHHHHHHHHHh--------------------hC-CEEEEEecCCC
Confidence 443211 1268999999999999999999997 34 89999999864
|
... |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=168.43 Aligned_cols=165 Identities=19% Similarity=0.164 Sum_probs=119.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCCCCCccccCC--------------CCCCc--------chH
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGV--------------APDHP--------ETK 72 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~~gg~~~~~~--------------~~~~~--------~~~ 72 (415)
..+.++|+|||||++||++|.+|.+.+ .. ++|||+++.+||.+.+.. .|.++ ...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g--~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~ 82 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAG--VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA 82 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcC--CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence 457889999999999999999999999 66 999999999998754421 11111 112
Q ss_pred HHHHHHHHHhhccCeE----EEeceEe--------ceEEEeccccc---ccCEEEEccCC-CCCCCCCCCCCC--CCCee
Q 014990 73 IVINQFSRVVQHERCS----FFGNVTL--------GSSVSLSELRQ---LYHVVVLAYGA-ESDRALGIPGED--LIGVH 134 (415)
Q Consensus 73 ~~~~~~~~~~~~~~~~----~~~~~~v--------~~~v~~~~~~~---~~d~lvlAtG~-~~~~~~~i~g~~--~~~v~ 134 (415)
.+.+++...++.++.. +...+.+ ...++.++... .+|.||+|||. ..|..|+++|.+ ...++
T Consensus 83 ~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~ 162 (443)
T COG2072 83 EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL 162 (443)
T ss_pred cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence 3556666666666543 2222222 12344444442 39999999997 569999999977 44566
Q ss_pred echhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
|+.++.+.. ...+|+|+|||+|+||++++.+|.+ .+ ++|+++.|++.
T Consensus 163 HS~~~~~~~------------~~~GKrV~VIG~GaSA~di~~~l~~--------------------~g-a~vt~~qRs~~ 209 (443)
T COG2072 163 HSADWPNPE------------DLRGKRVLVIGAGASAVDIAPELAE--------------------VG-ASVTLSQRSPP 209 (443)
T ss_pred chhcCCCcc------------ccCCCeEEEECCCccHHHHHHHHHh--------------------cC-CeeEEEecCCC
Confidence 776654321 2289999999999999999999997 45 89999999964
Q ss_pred c
Q 014990 215 V 215 (415)
Q Consensus 215 ~ 215 (415)
.
T Consensus 210 ~ 210 (443)
T COG2072 210 H 210 (443)
T ss_pred c
Confidence 4
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=164.18 Aligned_cols=286 Identities=17% Similarity=0.165 Sum_probs=175.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc---ccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe---
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV---RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL--- 95 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--- 95 (415)
++|||+|+||+++|..|++..++.+++++.......... .+................. .....++.+..++.+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 589999999999999999988778888877664422111 1111011111111111111 113446766665544
Q ss_pred ---ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhh--HHHhcCCCCCCCCCCCCCCCCeEEEEcCChh
Q 014990 96 ---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF--VWWYNGHPDGKNLSPDLKSTDTAVILGQGNV 170 (415)
Q Consensus 96 ---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~s 170 (415)
.+.+...++...||+|++|||+ .+..++ +....++++.... ...+... ....++|+|||+|..
T Consensus 80 d~~~~~v~~~~g~~~yd~LvlatGa-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~vvG~G~~ 147 (415)
T COG0446 80 DPENKVVLLDDGEIEYDYLVLATGA-RPRPPP--ISDWEGVVTLRLREDAEALKGG---------AEPPKDVVVVGAGPI 147 (415)
T ss_pred cCCCCEEEECCCcccccEEEEcCCC-cccCCC--ccccCceEEECCHHHHHHHHHH---------HhccCeEEEECCcHH
Confidence 2234555556689999999999 556555 4444444443322 2222211 112589999999999
Q ss_pred HHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHH
Q 014990 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250 (415)
Q Consensus 171 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 250 (415)
|+++|..+.+ .| .+|+++.+.+.+......
T Consensus 148 gle~A~~~~~--------------------~G-~~v~l~e~~~~~~~~~~~----------------------------- 177 (415)
T COG0446 148 GLEAAEAAAK--------------------RG-KKVTLIEAADRLGGQLLD----------------------------- 177 (415)
T ss_pred HHHHHHHHHH--------------------cC-CeEEEEEcccccchhhhh-----------------------------
Confidence 9999999996 34 689999888755322210
Q ss_pred hhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCce
Q 014990 251 EMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEF 330 (415)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~ 330 (415)
+.....+.+.+. ..||+++++..+.++. . ..+...... .. ...+
T Consensus 178 ----~~~~~~~~~~l~-------------~~gi~~~~~~~~~~i~--~-~~~~~~~~~-~~---------------~~~~ 221 (415)
T COG0446 178 ----PEVAEELAELLE-------------KYGVELLLGTKVVGVE--G-KGNTLVVER-VV---------------GIDG 221 (415)
T ss_pred ----HHHHHHHHHHHH-------------HCCcEEEeCCceEEEE--c-ccCcceeeE-EE---------------EeCC
Confidence 111112222332 5679999999988886 3 222221110 00 1233
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCC-ccccCCCceeeccCCCCCcc-cCCeeeeeccccCC---------ccchhh
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKG-IVPNIRGRVLKNISGDSSQV-ENGLYVCGWLKRGP---------TGIIAT 399 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g-~~~~~~G~i~v~~~~~~~t~-~p~vfaiGD~~~~~---------~~~~~~ 399 (415)
..+++|++++++|.+|+. .+....+ .....+|.+.+|+. ++++ .++||++|||+..+ ......
T Consensus 222 ~~~~~d~~~~~~g~~p~~----~l~~~~~~~~~~~~g~i~v~~~--~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~ 295 (415)
T COG0446 222 EEIKADLVIIGPGERPNV----VLANDALPGLALAGGAVLVDER--GGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAI 295 (415)
T ss_pred cEEEeeEEEEeecccccH----HHHhhCccceeccCCCEEEccc--cccCCCCCEEeccceEeeecccCCceeeeechhh
Confidence 479999999999999975 2323332 14566789999987 6676 99999999987422 223346
Q ss_pred hhhhHHHHHhhcc
Q 014990 400 NLYCAEETVSSLS 412 (415)
Q Consensus 400 a~~~g~~~a~~i~ 412 (415)
+..+++.++.++.
T Consensus 296 a~~~~~i~~~~~~ 308 (415)
T COG0446 296 AVAAGRIAAENIA 308 (415)
T ss_pred HhhhhHHHHHHhc
Confidence 7888888887765
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=165.43 Aligned_cols=150 Identities=23% Similarity=0.336 Sum_probs=109.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC--------C---------------CCCC-----
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--------V---------------APDH----- 68 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~--------~---------------~~~~----- 68 (415)
+..++|+|||||+|||.+|..|.+.| ++++++||.+.+||++.|. . .+++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~ 81 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPER 81 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCC--CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCccc
Confidence 35789999999999999999999999 9999999999999987664 0 0111
Q ss_pred -----cchHHHHHHHHHHhhccCe--EEEeceEece---------EEEeccc-----ccccCEEEEccCCCC-CCCCCCC
Q 014990 69 -----PETKIVINQFSRVVQHERC--SFFGNVTLGS---------SVSLSEL-----RQLYHVVVLAYGAES-DRALGIP 126 (415)
Q Consensus 69 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~---------~v~~~~~-----~~~~d~lvlAtG~~~-~~~~~i~ 126 (415)
+...++++++...++++++ .+..++.+.+ .+...+. ..-||.|++|||... |+.|.++
T Consensus 82 ~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~ 161 (448)
T KOG1399|consen 82 DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP 161 (448)
T ss_pred CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC
Confidence 2223788899999998875 3444553211 1222221 224899999999854 8888888
Q ss_pred CC--C--CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhc
Q 014990 127 GE--D--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 127 g~--~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
|. + ...+.|+.+|.. +....+|+|+|||.|+||+|++.++++
T Consensus 162 g~~~~~f~G~~iHS~~Yk~------------~e~f~~k~VlVIG~g~SG~DIs~d~~~ 207 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKS------------PEKFRDKVVLVVGCGNSGMDISLDLLR 207 (448)
T ss_pred CCchhhcCCcceehhhccC------------cccccCceEEEECCCccHHHHHHHHHH
Confidence 83 2 345667666551 113378999999999999999999885
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=157.20 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=98.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC---CccccC--------------CCC---------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF---GLVRSG--------------VAP--------------- 66 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g---g~~~~~--------------~~~--------------- 66 (415)
.+++++||.||++|+.|..|...+ ..++..+|+.+.+. |++..+ ..|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 368999999999999999999887 68999999887532 211111 000
Q ss_pred ---------CCcchHHHHHHHHHHhhccCeEEEeceEec------------eEEEec-----ccccccCEEEEccCCCCC
Q 014990 67 ---------DHPETKIVINQFSRVVQHERCSFFGNVTLG------------SSVSLS-----ELRQLYHVVVLAYGAESD 120 (415)
Q Consensus 67 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------------~~v~~~-----~~~~~~d~lvlAtG~~~~ 120 (415)
..+...++.+++++.+++....+..+..|. ..|.+. .....++.||||||. .|
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~-~P 159 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG-QP 159 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE-----EE
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC-CC
Confidence 122334566778888877764455555541 234431 122368999999996 67
Q ss_pred CCCCCC-CCC-CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHh
Q 014990 121 RALGIP-GED-LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTAL 198 (415)
Q Consensus 121 ~~~~i~-g~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~ 198 (415)
..|..- ... .+.++|+.++....... ..+++|+|||||.||.|++..|.+
T Consensus 160 ~iP~~~~~~~~~~~v~Hss~~~~~~~~~----------~~~~~V~VVGgGQSAAEi~~~L~~------------------ 211 (341)
T PF13434_consen 160 RIPEWFQDLPGSPRVFHSSEYLSRIDQS----------LAGKRVAVVGGGQSAAEIFLDLLR------------------ 211 (341)
T ss_dssp ---GGGGGGTT-TTEEEGGGHHHHHT---------------EEEEEE-SSHHHHHHHHHHHH------------------
T ss_pred CCCcchhhcCCCCCEEEehHhhhccccc----------cCCCeEEEECCcHhHHHHHHHHHh------------------
Confidence 776542 233 37899999988766431 268999999999999999999986
Q ss_pred hcCCcceEEEEeecCcc
Q 014990 199 EGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 199 ~~~~~~~v~l~~r~~~~ 215 (415)
.....+|++++|+..+
T Consensus 212 -~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 212 -RGPEAKVTWISRSPGF 227 (341)
T ss_dssp -H-TTEEEEEEESSSS-
T ss_pred -CCCCcEEEEEECCCcc
Confidence 2233689999999543
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=138.83 Aligned_cols=305 Identities=15% Similarity=0.134 Sum_probs=174.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC---CCccccC--------------CCC------------
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSG--------------VAP------------ 66 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~---gg~~~~~--------------~~~------------ 66 (415)
+.+..+++.||-||+.|+.|..|...+ +.++..+|+.+.+ .|++..+ ..|
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 356789999999999999999999887 4778999999652 2221111 000
Q ss_pred ------------CCcchHHHHHHHHHHhhccCeEEEeceEece----------E--EEeccc-ccccCEEEEccCCCCCC
Q 014990 67 ------------DHPETKIVINQFSRVVQHERCSFFGNVTLGS----------S--VSLSEL-RQLYHVVVLAYGAESDR 121 (415)
Q Consensus 67 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------~--v~~~~~-~~~~d~lvlAtG~~~~~ 121 (415)
.+....++-++.++.+... -..+.+..|.. . +...+. ...++.|||++|. +|+
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~-~P~ 158 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT-QPY 158 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC-CcC
Confidence 1123345556667776665 44444554421 0 112222 3468899999999 566
Q ss_pred CCC-CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhc
Q 014990 122 ALG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (415)
Q Consensus 122 ~~~-i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~ 200 (415)
+|+ +..+..+.++|+.+|...... +...+.|+|||+|.||.|+..+|......
T Consensus 159 IP~~f~~l~~~~vfHss~~~~~~~~----------~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~---------------- 212 (436)
T COG3486 159 IPPCFRSLIGERVFHSSEYLERHPE----------LLQKRSVTVIGSGQSAAEIFLDLLNSQPP---------------- 212 (436)
T ss_pred CChHHhCcCccceeehHHHHHhhHH----------hhcCceEEEEcCCccHHHHHHHHHhCCCC----------------
Confidence 654 455556789999988864432 21334599999999999999999861110
Q ss_pred CCcceEEEEeecCccc----CCCCH---------------HHH-HHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHH
Q 014990 201 SSIRKVYLVGRRGPVQ----AACTA---------------KEL-REILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260 (415)
Q Consensus 201 ~~~~~v~l~~r~~~~~----~~~~~---------------~~l-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 260 (415)
...++.|++|+.... .+|.. ++. ++++.... +....... .+-.+
T Consensus 213 -~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~---------~~YkgI~~------~ti~~ 276 (436)
T COG3486 213 -QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQR---------LLYKGISF------DTIEE 276 (436)
T ss_pred -cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcC---------ccccccCH------HHHHH
Confidence 112589999984321 11211 111 11111100 00011111 11123
Q ss_pred HHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEE
Q 014990 261 VYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLK 340 (415)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~ 340 (415)
+++.|+.-... .....+.+...+++..++ ...+|. -.+.+... .+++.+++++|+||+
T Consensus 277 Iy~~lY~~~l~------~~~~~v~l~~~~ev~~~~--~~G~g~-~~l~~~~~-------------~~~~~~t~~~D~vIl 334 (436)
T COG3486 277 IYDLLYEQSLG------GRKPDVRLLSLSEVQSVE--PAGDGR-YRLTLRHH-------------ETGELETVETDAVIL 334 (436)
T ss_pred HHHHHHHHHhc------CCCCCeeeccccceeeee--cCCCce-EEEEEeec-------------cCCCceEEEeeEEEE
Confidence 44444433221 124567777888888887 412332 23444332 156777999999999
Q ss_pred eeccCCccCCCCcccCC--CCccccCCCceeeccCCCCC---cccCCeeeeeccc
Q 014990 341 SIGYKSVPVNGLPFDNH--KGIVPNIRGRVLKNISGDSS---QVENGLYVCGWLK 390 (415)
Q Consensus 341 atG~~p~~~~~~~~~~~--~g~~~~~~G~i~v~~~~~~~---t~~p~vfaiGD~~ 390 (415)
||||+... +. |.+. ..+..+++|...++.+-... ...-.||+.|-+.
T Consensus 335 ATGY~~~~-P~--fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ 386 (436)
T COG3486 335 ATGYRRAV-PS--FLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAEL 386 (436)
T ss_pred ecccccCC-ch--hhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccc
Confidence 99999633 21 2221 23456777887777652111 1224699998654
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-15 Score=133.55 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=97.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc--------chHHHHHHHHHHhhccCeEEEece
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP--------ETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
.+|||||.||.+||..|+..-|..+|.|+..++.+-....|.....+. ...+.-.+++.++++. +++. +
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v-~~~~--s 78 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDV-VTWD--S 78 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHhh-hhhc--c
Confidence 589999999999999999999999999998776433222211000000 0001111122222220 1110 0
Q ss_pred EeceEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeec-----hhhHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 014990 94 TLGSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSA-----REFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (415)
Q Consensus 94 ~v~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~ 167 (415)
. ...+.++++ +..|++|++|+|. .|+. ..+|.+ +.+.-- .+.+.+ .+.+.|.|.|+|.
T Consensus 79 ~-ehci~t~~g~~~ky~kKOG~tg~-kPkl-q~E~~n-~~Iv~irDtDsaQllq~------------kl~kaK~Vlilgn 142 (334)
T KOG2755|consen 79 S-EHCIHTQNGEKLKYFKLCLCTGY-KPKL-QVEGIN-PKIVGIRDTDSAQLLQC------------KLVKAKIVLILGN 142 (334)
T ss_pred c-cceEEecCCceeeEEEEEEecCC-Ccce-eecCCC-ceEEEEecCcHHHHHHH------------HHhhcceEEEEec
Confidence 0 112233444 3479999999999 5554 445422 122211 111111 1347899999999
Q ss_pred ChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHH
Q 014990 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227 (415)
Q Consensus 168 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~ 227 (415)
|-++.|.+.++.- -+|+|......+-+.|+++-..+.
T Consensus 143 Ggia~El~yElk~-----------------------~nv~w~ikd~~IsaTFfdpGaaef 179 (334)
T KOG2755|consen 143 GGIAMELTYELKI-----------------------LNVTWKIKDEGISATFFDPGAAEF 179 (334)
T ss_pred CchhHHHHHHhhc-----------------------ceeEEEecchhhhhcccCccHHHH
Confidence 9999999999874 489999988888888877554443
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=133.04 Aligned_cols=82 Identities=16% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC--CCCcccCCeeeeeccccCCccchhhhhhhH
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG--DSSQVENGLYVCGWLKRGPTGIIATNLYCA 404 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~--~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g 404 (415)
.|+..++++|+|++++|..|..-. -......|+..+++|++.-.+.. --.++.+|||.+|-+ .+|..+. .++.||
T Consensus 457 ~g~~~e~~~DLVVLa~Gmep~~g~-~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~a-qgPkdI~-~siaqa 533 (622)
T COG1148 457 TGEVKEIEADLVVLATGMEPSEGA-KKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAA-QGPKDIA-DSIAQA 533 (622)
T ss_pred CccceecccceEEEeeccccCcch-HHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecc-cCCccHH-HHHHHh
Confidence 466678999999999999984311 11334567888888888766432 035788999999955 5787766 578888
Q ss_pred HHHHhhc
Q 014990 405 EETVSSL 411 (415)
Q Consensus 405 ~~~a~~i 411 (415)
+.||...
T Consensus 534 ~aAA~kA 540 (622)
T COG1148 534 KAAAAKA 540 (622)
T ss_pred HHHHHHH
Confidence 8877643
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-15 Score=135.49 Aligned_cols=296 Identities=15% Similarity=0.127 Sum_probs=157.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCC--------CCCcchHHHH----HHHHHHhh
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA--------PDHPETKIVI----NQFSRVVQ 83 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~--------~~~~~~~~~~----~~~~~~~~ 83 (415)
.++..+|+|||||.+|+++|..+.++-+..+|.|+|+.+..+-+..+.+. .......+++ ..+.+..+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~ 115 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVK 115 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHH
Confidence 35788999999999999999999998877899999998764322111110 0000000000 01111111
Q ss_pred ccCeEEEeceEeceEEEeccc-ccccCEEEEccCCCCCCCCCCCCC----CCCCeee--chhhHHH----hcCCCCCCCC
Q 014990 84 HERCSFFGNVTLGSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGE----DLIGVHS--AREFVWW----YNGHPDGKNL 152 (415)
Q Consensus 84 ~~~~~~~~~~~v~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~----~~~~v~~--~~~~~~~----~~~~~~~~~~ 152 (415)
.++. ..| .+.++.+ +++||++|+|+|. +-+.-.|+|+ +.|++.+ +..+.+. +.......+.
T Consensus 116 ~f~P--~~N-----~v~t~gg~eIsYdylviA~Gi-ql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAI 187 (446)
T KOG3851|consen 116 EFNP--DKN-----TVVTRGGEEISYDYLVIAMGI-QLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAI 187 (446)
T ss_pred hcCC--CcC-----eEEccCCcEEeeeeEeeeeec-eeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceE
Confidence 1110 111 2334444 4699999999998 3333355553 3455543 2222221 1111000000
Q ss_pred CCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc-eEEEEeecCcccCCCCHHHHHHHHcCC
Q 014990 153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR-KVYLVGRRGPVQAACTAKELREILGIK 231 (415)
Q Consensus 153 ~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~r~~~~~~~~~~~~l~~~~~~~ 231 (415)
- -.+...|=--|+..-.+-++.... ++.|.+ ++.++.... +..-|..+...
T Consensus 188 f--TfPntpiKCAGAPQKi~yise~y~-------------------Rk~gvRd~a~iiy~Ts-l~~iFgVk~Y~------ 239 (446)
T KOG3851|consen 188 F--TFPNTPIKCAGAPQKIMYISESYF-------------------RKRGVRDNANIIYNTS-LPTIFGVKHYA------ 239 (446)
T ss_pred E--ecCCCccccCCCchhhhhhhHHHH-------------------HHhCccccccEEEecC-ccceecHHHHH------
Confidence 0 001122222344444444444433 344443 344443331 22223333221
Q ss_pred CeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEee
Q 014990 232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (415)
Q Consensus 232 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~ 311 (415)
+.|.+... ++.|.+.+.....++. . +.+ ...|++
T Consensus 240 -------------------------------~AL~k~~~---------~rni~vn~krnLiEV~--~--~~~--~AvFe~ 273 (446)
T KOG3851|consen 240 -------------------------------DALEKVIQ---------ERNITVNYKRNLIEVR--T--NDR--KAVFEN 273 (446)
T ss_pred -------------------------------HHHHHHHH---------hcceEeeeccceEEEe--c--cch--hhHHHh
Confidence 22222222 5678888888777876 4 222 123333
Q ss_pred eeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc
Q 014990 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (415)
Q Consensus 312 ~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~ 391 (415)
. + ..|..++++++++......+++. +...+. ..+..|++.||..+.+++.+||||+||||.+
T Consensus 274 L-------~-----kPG~t~ei~yslLHv~Ppms~pe-----~l~~s~-~adktGfvdVD~~TlQs~kypNVFgiGDc~n 335 (446)
T KOG3851|consen 274 L-------D-----KPGVTEEIEYSLLHVTPPMSTPE-----VLANSD-LADKTGFVDVDQSTLQSKKYPNVFGIGDCMN 335 (446)
T ss_pred c-------C-----CCCceeEEeeeeeeccCCCCChh-----hhhcCc-ccCcccceecChhhhccccCCCceeeccccC
Confidence 2 1 14777899999999888777654 212222 3455699999998867888999999999998
Q ss_pred CCc-cchhhhhhhHHHHHhhc
Q 014990 392 GPT-GIIATNLYCAEETVSSL 411 (415)
Q Consensus 392 ~~~-~~~~~a~~~g~~~a~~i 411 (415)
.|+ +..+.+..|...+.+||
T Consensus 336 ~PnsKTaAAvaaq~~vv~~nl 356 (446)
T KOG3851|consen 336 LPNSKTAAAVAAQSPVVDKNL 356 (446)
T ss_pred CCchhhHHHHHhcCchhhhhH
Confidence 775 33334445555555554
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-15 Score=134.29 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=63.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc-----c-hHHHH--H--HHHHHhhccCeEEE
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP-----E-TKIVI--N--QFSRVVQHERCSFF 90 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~-----~-~~~~~--~--~~~~~~~~~~~~~~ 90 (415)
+||||||||||++||.+|++.+ .+++|+|+.+..+.... .. +... . ..... . .+.+.+++.++++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--~~v~ii~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--AKVLIIEKSPGTPYNSG-CI-PSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIR 76 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEESSSSHHHHHHS-HH-HHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCC--CeEEEEecccccccccc-cc-cccccccccccccccccccccccccccccceEEEe
Confidence 6999999999999999999988 99999988764222100 00 0000 0 00111 1 33434455677774
Q ss_pred eceEe-c-----eE-------E---E-ecccccccCEEEEccCCCCCCCCCCCCC
Q 014990 91 GNVTL-G-----SS-------V---S-LSELRQLYHVVVLAYGAESDRALGIPGE 128 (415)
Q Consensus 91 ~~~~v-~-----~~-------v---~-~~~~~~~~d~lvlAtG~~~~~~~~i~g~ 128 (415)
.+..+ . .. + . .+.....||+||+|||+ .++.|++||.
T Consensus 77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~i~g~ 130 (201)
T PF07992_consen 77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS-RPRTPNIPGE 130 (201)
T ss_dssp HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE-EEEEESSTTT
T ss_pred eccccccccccccccccCcccceeeccCCceEecCCeeeecCcc-ccceeecCCC
Confidence 44332 1 10 1 0 11223579999999998 6888888986
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=123.62 Aligned_cols=292 Identities=14% Similarity=0.175 Sum_probs=164.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CC-------ccccCCCCC-----------------Ccch
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FG-------LVRSGVAPD-----------------HPET 71 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg-------~~~~~~~~~-----------------~~~~ 71 (415)
+++..-+|||+|.|..+++.......+..+|.+|...+.. +. +|.|+- |. +.++
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d-pn~~k~lrfkqwsGkeRsiffep 254 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD-PNSAKKLRFKQWSGKERSIFFEP 254 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC-CChhhheeecccCCccceeEecC
Confidence 4566779999999999888877777677888888666442 11 122221 10 1111
Q ss_pred HHHHHHHHHH--hhccCeEEEeceEe------ceEEEecccc-cccCEEEEccCCCCCCCCCC-CCC--C---CCCeeec
Q 014990 72 KIVINQFSRV--VQHERCSFFGNVTL------GSSVSLSELR-QLYHVVVLAYGAESDRALGI-PGE--D---LIGVHSA 136 (415)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~~~~~~~v------~~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i-~g~--~---~~~v~~~ 136 (415)
+.+.-.-.++ ..+-|+-+..+-.+ .+.|.+.++. +.||.++||||. .|+..++ ... + ...++..
T Consensus 255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~-~Pk~l~~~~~A~~evk~kit~fr~ 333 (659)
T KOG1346|consen 255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGV-RPKKLQVFEEASEEVKQKITYFRY 333 (659)
T ss_pred CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCc-CcccchhhhhcCHHhhhheeEEec
Confidence 1111111111 12234444444333 2235555554 589999999999 5665443 211 1 1122222
Q ss_pred hhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEE-eecCcc
Q 014990 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV-GRRGPV 215 (415)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~r~~~~ 215 (415)
..-+.++... +...++|.|||+|..|-|+|..|.+.. +..+. +|+-+ .-..+.
T Consensus 334 p~DF~rlek~---------~aek~siTIiGnGflgSELacsl~rk~----------------r~~g~-eV~QvF~Ek~nm 387 (659)
T KOG1346|consen 334 PADFKRLEKG---------LAEKQSITIIGNGFLGSELACSLKRKY----------------RNEGV-EVHQVFEEKYNM 387 (659)
T ss_pred chHHHHHHHh---------hhhcceEEEEcCcchhhhHHHHHHHhh----------------hccCc-EEEEeecccCCh
Confidence 2222233322 224589999999999999999998611 01232 33322 211110
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
..+..+.+.+.-++.++ +.||.+..+..+..+.
T Consensus 388 ----------------------------------~kiLPeyls~wt~ekir-------------~~GV~V~pna~v~sv~ 420 (659)
T KOG1346|consen 388 ----------------------------------EKILPEYLSQWTIEKIR-------------KGGVDVRPNAKVESVR 420 (659)
T ss_pred ----------------------------------hhhhHHHHHHHHHHHHH-------------hcCceeccchhhhhhh
Confidence 00111222222333443 6688888777766664
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCC-CceeeccCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIR-GRVLKNISG 374 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~-G~i~v~~~~ 374 (415)
. ..+++ -+.+. +| .++..|+|+.|+|-.||. .+....|+..+++ |-+.+|...
T Consensus 421 --~-~~~nl-~lkL~----------------dG--~~l~tD~vVvavG~ePN~----ela~~sgLeiD~~lGGfrvnaeL 474 (659)
T KOG1346|consen 421 --K-CCKNL-VLKLS----------------DG--SELRTDLVVVAVGEEPNS----ELAEASGLEIDEKLGGFRVNAEL 474 (659)
T ss_pred --h-hccce-EEEec----------------CC--CeeeeeeEEEEecCCCch----hhcccccceeecccCcEEeehee
Confidence 2 12222 12221 23 389999999999999987 5667788888877 777788753
Q ss_pred CCCcccCCeeeeeccccCCccch--------hhhhhhHHHHHhhcc
Q 014990 375 DSSQVENGLYVCGWLKRGPTGII--------ATNLYCAEETVSSLS 412 (415)
Q Consensus 375 ~~~t~~p~vfaiGD~~~~~~~~~--------~~a~~~g~~~a~~i~ 412 (415)
.--.|||++||++.-..++. .+|.-.|+.|.+|..
T Consensus 475 ---~ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMt 517 (659)
T KOG1346|consen 475 ---KARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMT 517 (659)
T ss_pred ---ecccceeeecchhhhhcccccceeccccccceeeceecccccc
Confidence 45689999999873222111 156667777776654
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.2e-10 Score=108.16 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=37.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCceEEEEcCCCCCCCccccC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g-~~~~v~lie~~~~~gg~~~~~ 63 (415)
+++|+|||||++|+++|.+|.+.. +...|.|||+.+.+|.-+.|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs 46 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYS 46 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCC
Confidence 478999999999999999999988 334599999998877655443
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.8e-11 Score=117.35 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||+|.+|+++|..|++.+ .+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g--~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAG--KRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CcEEEEECCC
Confidence 478999999999999999999999 9999999874
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-09 Score=107.41 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=34.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+++|+||||||+|+++|.+|.+.+...+|+|||++..+|
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 368999999999999999999877557999999987766
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=97.19 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=72.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc------------------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR------------------------------------ 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~------------------------------------ 61 (415)
..++|+|||||||||.||..+++.| .+|+|||+.+.+|.-+.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC--CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 5689999999999999999999999 99999999977543110
Q ss_pred -----------cC----------CCCCCcchHHHHHHHHHHhhccCeEEEeceEec--------eEEEeccc-ccccCEE
Q 014990 62 -----------SG----------VAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSEL-RQLYHVV 111 (415)
Q Consensus 62 -----------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~v~~~~~-~~~~d~l 111 (415)
++ ..|.-..-..+++.+...+++.+++++.++.+. ..+++.++ .+.+|.|
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 00 011111223566777788888899999888762 23555566 4689999
Q ss_pred EEccCC
Q 014990 112 VLAYGA 117 (415)
Q Consensus 112 vlAtG~ 117 (415)
|||||-
T Consensus 160 ilAtGG 165 (408)
T COG2081 160 ILATGG 165 (408)
T ss_pred EEecCC
Confidence 999995
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-06 Score=86.02 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||+|++|+++|..|.+.+ .+|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g--~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAG--KKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 57999999999999999999998 9999999874
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-08 Score=98.96 Aligned_cols=96 Identities=21% Similarity=0.244 Sum_probs=53.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc----------------------cc---------------
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV----------------------RS--------------- 62 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~----------------------~~--------------- 62 (415)
|+|+|||||||||.||..+++.+ .+|+|+|+++.+|.-+ .|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g--~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKG--ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 68999999999999999999999 9999999997644210 00
Q ss_pred -----------CC----------CCCCcchHHHHHHHHHHhhccCeEEEeceEece---------EEEe-cccccccCEE
Q 014990 63 -----------GV----------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSL-SELRQLYHVV 111 (415)
Q Consensus 63 -----------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~v~~-~~~~~~~d~l 111 (415)
++ .|.-....++++.+...+++.++++++++.+.. .+.. ......+|.|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 00 000012235556677777888999998887632 2344 3334578999
Q ss_pred EEccCC
Q 014990 112 VLAYGA 117 (415)
Q Consensus 112 vlAtG~ 117 (415)
|||||.
T Consensus 159 ILAtGG 164 (409)
T PF03486_consen 159 ILATGG 164 (409)
T ss_dssp EE----
T ss_pred EEecCC
Confidence 999997
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.2e-08 Score=89.53 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=35.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|+||||||||++||.+|++.| .+|+|+|+...+|+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G--~~V~liEk~~~~Gg 62 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGG 62 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCC
Confidence 4689999999999999999999998 99999999987765
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.9e-07 Score=85.12 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=41.9
Q ss_pred hhhhhhccccc-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 4 ARAWLSRSFTA-LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
||..+.+.+.. +....++|+||||||||+++|..|++.+ .+|+|+|++..+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~G--~~V~vlEk~~~~Gg 58 (254)
T TIGR00292 5 SRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKNG--LKVCVLERSLAFGG 58 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 44555554321 2235789999999999999999999999 99999999988764
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.6e-07 Score=89.85 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-C---------CCCCC-------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G---------VAPDH------------------- 68 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~---------~~~~~------------------- 68 (415)
..++|+||||||||.+||..|++.| ++|+|+|+.+.+|..... + ..+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 4689999999999999999999999 999999998776542211 0 00000
Q ss_pred -----------c-chHHHHHHHHHHhhccCeEEEeceEeceEEEecc----------cccccCEEEEccCCC
Q 014990 69 -----------P-ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSE----------LRQLYHVVVLAYGAE 118 (415)
Q Consensus 69 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~~----------~~~~~d~lvlAtG~~ 118 (415)
. ....+-..+.+.+.+.+..++.++.+......++ .+..+++||.|.|+.
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 0 0112223456677778888888877643222221 144799999999983
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.1e-07 Score=85.81 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=63.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-------------------------------------
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS------------------------------------- 62 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~------------------------------------- 62 (415)
++|+|||||+||+++|..|++.| .+|+|+|+.+.++.....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 58999999999999999999999 999999998654321000
Q ss_pred CCCCC--C-cchHHHHHHHHHHhhccCeEEEeceEece--------EEEecc--cccccCEEEEccCCC
Q 014990 63 GVAPD--H-PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSE--LRQLYHVVVLAYGAE 118 (415)
Q Consensus 63 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~--~~~~~d~lvlAtG~~ 118 (415)
..... + .....+.+.+.+.+.+.++++..++.+.. .+.... ....+|+||+|+|..
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 00000 0 11223445566667777888877766532 122121 234789999999984
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=87.09 Aligned_cols=100 Identities=24% Similarity=0.255 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-----CCccc-----cCC-------CC-------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-----FGLVR-----SGV-------AP------------- 66 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-----gg~~~-----~~~-------~~------------- 66 (415)
...++|+||||||||+++|..|++.| .+|+|+|+.+.. ++.+. .++ .+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~G--l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAG--LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCC--CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 35689999999999999999999998 999999997532 11100 000 00
Q ss_pred ---CC--cchHHHHHHHHHHhhccCeEEEeceEec-------eEEEeccc-ccccCEEEEccCCC
Q 014990 67 ---DH--PETKIVINQFSRVVQHERCSFFGNVTLG-------SSVSLSEL-RQLYHVVVLAYGAE 118 (415)
Q Consensus 67 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------~~v~~~~~-~~~~d~lvlAtG~~ 118 (415)
.+ ....++...+.+.+...++++....... ..++++++ ...+|.||.|+|..
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 00 1122344455555566678875432221 12444454 35899999999984
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-07 Score=67.07 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.6
Q ss_pred EECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc
Q 014990 24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (415)
Q Consensus 24 IIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~ 62 (415)
|||||++|+++|..|++.+ .+|+|+|+.+.+||....
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcccCcceeE
Confidence 8999999999999999998 999999999999987653
|
... |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-06 Score=66.20 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=55.2
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+. +..++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--------------------~g-~~vtli~~~~~~~-~~~~~~~---------------- 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--------------------LG-KEVTLIERSDRLL-PGFDPDA---------------- 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--------------------TT-SEEEEEESSSSSS-TTSSHHH----------------
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------hC-cEEEEEeccchhh-hhcCHHH----------------
Confidence 58999999999999999986 34 6999999998764 2222222
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEee
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~ 311 (415)
+..+.+.+. +.||+++++..+.++. . ++..++ |++++
T Consensus 43 -----------------~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~-~~~~~~-V~~~~ 79 (80)
T PF00070_consen 43 -----------------AKILEEYLR-------------KRGVEVHTNTKVKEIE--K-DGDGVE-VTLED 79 (80)
T ss_dssp -----------------HHHHHHHHH-------------HTTEEEEESEEEEEEE--E-ETTSEE-EEEET
T ss_pred -----------------HHHHHHHHH-------------HCCCEEEeCCEEEEEE--E-eCCEEE-EEEec
Confidence 222223333 5689999999999997 4 233365 76653
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=90.91 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
...+|||||+|+||++||..+++.| .+|+|+||.+..||...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCCCCccc
Confidence 4679999999999999999999999 99999999988776543
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.1e-07 Score=80.00 Aligned_cols=44 Identities=32% Similarity=0.358 Sum_probs=39.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
...+|+||||||+||+||++|++.+ .+|+|||++-.+||-+..|
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG~w~G 72 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIWGG 72 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCC--ceEEEEEeecccCCccccc
Confidence 4678999999999999999999999 9999999998888765533
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.7e-06 Score=82.46 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|+|||||+||+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 4678999999999999999999999 99999998753
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=84.86 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=34.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++|+||||||||++||..|++.| .+|+|+|+.+.++
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G--~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Confidence 5689999999999999999999999 9999999986544
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.1e-06 Score=80.90 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=34.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg 58 (415)
..++|+|||||+||++||+.|++. + .+|+|||+...+||
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g--~kV~viEk~~~~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPN--VKVAIIEQSVSPGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCC--CeEEEEecCccccc
Confidence 467999999999999999999976 5 99999999987765
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-06 Score=84.49 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=34.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|+||||||||++||..|++.| .+|+|||+.+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G--~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCC
Confidence 4689999999999999999999999 999999998654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=61.40 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=53.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...+....+.+.+++.+++++.++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~~~--------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDRLL--------PG--FDPDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSSSS--------TT--SSHHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccchhh--------hh--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 6899999999999999999999 9999999988753 11 2235566777888888999999988743
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=82.99 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=32.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+|+||||||||+++|..|++.| .+|+|+|+.+..++
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--LRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCC
Confidence 6999999999999999999998 99999999865543
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.4e-07 Score=78.98 Aligned_cols=44 Identities=36% Similarity=0.487 Sum_probs=35.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
..++|+||||||||++||.+|++.+ .+|++||++..+||....+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g--~kV~v~E~~~~~GGg~~~G 59 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAG--LKVAVIERKLSPGGGMWGG 59 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHT--S-EEEEESSSS-BTTTTS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCC--CeEEEEecCCCCCcccccc
Confidence 5689999999999999999999999 9999999999998876644
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=82.35 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G--~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAG--VDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 4589999999999999999999999 99999998753
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.7e-06 Score=81.33 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=32.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+||||||+|+++|..|++.|++++|+|||+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 368999999999999999999996669999999974
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-05 Score=82.97 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~G--i~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 4578999999999999999999999 99999999754
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=79.33 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|+||||||||+++|..|++.| .+|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G--~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAG--IETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 58999999999999999999999 999999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.6e-06 Score=86.17 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=37.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...++|+|||+|.+|+++|..+++.+ .+|+|||+.+..||..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHG--LKVIVVEKDPVFGGTT 51 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCccc
Confidence 45789999999999999999999999 9999999998777653
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=80.62 Aligned_cols=34 Identities=47% Similarity=0.653 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+||||||||++||..|++.| ++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG--IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCC
Confidence 58999999999999999999999 99999998743
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-05 Score=80.51 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=31.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 23 CVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 23 vIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+|||||+||++||..|++.+ .+|+|+|+.+.+|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G--~~V~llEk~~~~G~ 34 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG--LSVLLLEKNKKIGK 34 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC--CcEEEEecCccccc
Confidence 69999999999999999999 99999999987654
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=84.31 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=36.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
...+|||||+|++|+++|..+++.| .+|+|||+.+.+||.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G--~~v~llEk~~~~gG~ 45 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRG--LSTVVVEKAPHYGGS 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCcc
Confidence 4689999999999999999999999 999999999877764
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.6e-06 Score=84.03 Aligned_cols=42 Identities=26% Similarity=0.465 Sum_probs=39.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.|||++|++|++.+|+++++|+|+.++.||.+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 579999999999999999999999999999999999999865
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.2e-05 Score=77.91 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
+.+++++|||||+.|+..|..+++.| .+|||+|+.+.+- |. ..+++.+.+.+.+++.++.+..++.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG--~~VTiie~~~~iL--------p~--~D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALG--SKVTVVERGDRIL--------PG--EDPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCC--------Cc--CCHHHHHHHHHHHHhCCeEEEccceEE
Confidence 56889999999999999999999999 9999999988642 32 345777888888888778888887763
Q ss_pred eE--------EEeccc---ccccCEEEEccCCCCCCC
Q 014990 97 SS--------VSLSEL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 97 ~~--------v~~~~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.. +..++. ...+|+|++|+|. .|+.
T Consensus 239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR-~Pn~ 274 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR-KPNT 274 (454)
T ss_pred EEEecCCeEEEEEecCCCCEEEeeEEEEccCC-ccCC
Confidence 22 222232 2459999999997 4554
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=79.92 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+||||||+|+++|..|++.| .+|+|||+.+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~G--i~V~llEr~~~ 39 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCG--LNTVIVDKSDG 39 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcC--CCEEEEeCCCc
Confidence 35689999999999999999999999 99999999854
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-05 Score=78.17 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=65.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+. +.. ..++...+.+.++..+++++.+..+..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~GI~i~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLG--SKVTVLDAASTIL--------PRE--EPSVAALAKQYMEEDGITFLLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCccC--------CCC--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 4578999999999999999999998 9999999987642 211 123445566667778999888765421
Q ss_pred ------E--EEecccccccCEEEEccCCCCCCC
Q 014990 98 ------S--VSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ------~--v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
. +..+.....+|.||+|+|. .|..
T Consensus 224 i~~~~~~v~v~~~g~~i~~D~viva~G~-~p~~ 255 (438)
T PRK07251 224 VKNDGDQVLVVTEDETYRFDALLYATGR-KPNT 255 (438)
T ss_pred EEecCCEEEEEECCeEEEcCEEEEeeCC-CCCc
Confidence 1 1212223579999999998 4443
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=79.47 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+||||||||+++|..|++.| .+|+|||+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~G--l~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLG--LNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC--CcEEEecCc
Confidence 4689999999999999999999999 999999986
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=80.38 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G--~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAG--VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 68999999999999999999999 99999999753
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.2e-06 Score=83.60 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=37.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.|||+||..|++.|+.++|+|+|+.+.+||...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 579999999999999999999775589999999999998754
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=3e-05 Score=80.24 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||||+||+.||..+++.| .+|+|+|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G--~kV~LiE~~ 36 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHN 36 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcC--CcEEEEecc
Confidence 4689999999999999999999999 999999987
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=84.76 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+||||||||+++|..|++.+++++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 589999999999999999999844499999999865
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.7e-05 Score=75.77 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=69.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-----------CceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ-----------EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~-----------~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (415)
...+|+||||||.|+.+|..|+..-+ +.+|+|+|+.+.. .|.+ +.++..+..+.+++.|
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------Lp~~--~~~l~~~a~~~L~~~G 223 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------LPMF--PPKLSKYAERALEKLG 223 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------ccCC--CHHHHHHHHHHHHHCC
Confidence 34579999999999999999875441 2499999988864 2432 2356677888899999
Q ss_pred eEEEeceEece----EEEecccc--cccCEEEEccCCC
Q 014990 87 CSFFGNVTLGS----SVSLSELR--QLYHVVVLAYGAE 118 (415)
Q Consensus 87 ~~~~~~~~v~~----~v~~~~~~--~~~d~lvlAtG~~ 118 (415)
+++..++.|.. .++++++. +.++.+|.|+|.+
T Consensus 224 V~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 224 VEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCc
Confidence 99999988733 35555554 7899999999983
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.4e-05 Score=77.15 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~~~~~l~~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLG--SKVTVIEMLDRIL--------PG--EDAEVSKVVAKALKKKGVKILTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCCCC--------CC--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3578999999999999999999998 9999999887642 21 1234455666777778899988865521
Q ss_pred ------E--EEeccc---ccccCEEEEccCCCCCCC
Q 014990 98 ------S--VSLSEL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ------~--v~~~~~---~~~~d~lvlAtG~~~~~~ 122 (415)
. +...++ ...+|.||+|+|. .|..
T Consensus 237 i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~-~p~~ 271 (461)
T TIGR01350 237 VEKNDDQVVYENKGGETETLTGEKVLVAVGR-KPNT 271 (461)
T ss_pred EEEeCCEEEEEEeCCcEEEEEeCEEEEecCC-cccC
Confidence 1 222223 3579999999998 4443
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.3e-06 Score=83.15 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=41.0
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....+++|+|||||.|||+||..|...| .+|+|+|..+++||-..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeE
Confidence 3456889999999999999999999999 99999999999999754
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.1e-05 Score=74.72 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+.. . ..+.+....+.+.+++.+++++.++.+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g--~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 208 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAG--KAVTLVDNAASLLA--------S-LMPPEVSSRLQHRLTEMGVHLLLKSQLQG 208 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCcccc--------h-hCCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 4678999999999999999999998 99999998776421 1 11224455666777778999887765522
Q ss_pred --------EEEeccc-ccccCEEEEccCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.||+|+|.
T Consensus 209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 209 LEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred EEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 1233333 3479999999998
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.7e-06 Score=83.45 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|||||||++||+||..|++.| ++|+|+|+++.+||...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCCcceE
Confidence 5689999999999999999999999 99999999999998543
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.2e-05 Score=75.73 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=65.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+.... ....+...+.+.++..+++++.++.+..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRR--CKVTVIELAATVMGRN---------APPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCcchhhh---------cCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 4578999999999999999999998 9999999887643211 1224445666667778999988776522
Q ss_pred -------EEEecccc-cccCEEEEccCC
Q 014990 98 -------SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 98 -------~v~~~~~~-~~~d~lvlAtG~ 117 (415)
.+...++. ..+|.||+|+|.
T Consensus 212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 212 VVDGEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred EEcCCEEEEEECCCCEEECCEEEECCCC
Confidence 12233332 479999999998
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.1e-05 Score=76.54 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=65.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
.++|+|||||++|+.+|..|++.+ .+|+|+++.+.+. |.. ..++...+.+.++..+++++.++.+...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--~~~~~~~l~~~l~~~gI~i~~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFG--VEVTVVEAADRIL--------PTE--DAELSKEVARLLKKLGVRVVTGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccC--------CcC--CHHHHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 579999999999999999999998 9999999887541 221 2345566667777789999888655221
Q ss_pred ----------EEeccc---ccccCEEEEccCCCCCCC
Q 014990 99 ----------VSLSEL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 99 ----------v~~~~~---~~~~d~lvlAtG~~~~~~ 122 (415)
+...++ ...+|.||+|+|. .|..
T Consensus 248 ~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~-~p~~ 283 (472)
T PRK05976 248 TLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR-RPNT 283 (472)
T ss_pred EEecCCCEEEEEEeCCceEEEEeCEEEEeeCC-ccCC
Confidence 111122 2478999999998 4443
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.3e-05 Score=75.39 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=66.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|.+.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~ll--------~~--~d~e~~~~l~~~L~~~GI~i~~~~~V~~ 236 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLG--TKVTIVEMAPQLL--------PG--EDEDIAHILREKLENDGVKIFTGAALKG 236 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------cc--ccHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 3578999999999999999999998 9999999887542 22 1234556667777778999988876522
Q ss_pred ------EEEec-cc---ccccCEEEEccCCCCCCC
Q 014990 98 ------SVSLS-EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ------~v~~~-~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.+... +. ...+|.|++|+|. .|..
T Consensus 237 i~~~~~~v~~~~~g~~~~i~~D~vivA~G~-~p~~ 270 (458)
T PRK06912 237 LNSYKKQALFEYEGSIQEVNAEFVLVSVGR-KPRV 270 (458)
T ss_pred EEEcCCEEEEEECCceEEEEeCEEEEecCC-ccCC
Confidence 11111 11 3479999999997 4443
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=7.2e-05 Score=75.75 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=65.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+.. . ...++...+.+.+++.+++++.+..+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~l~~--------~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERG--LHPTLIHRSDKINK--------L--MDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CcEEEEecccccch--------h--cCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 578999999999999999999999 99999998775421 1 1234556677778888999988776532
Q ss_pred ---EEEeccc-ccccCEEEEccCC
Q 014990 98 ---SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.|++|+|.
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCC
Confidence 2333333 2479999999998
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00035 Score=65.46 Aligned_cols=202 Identities=19% Similarity=0.179 Sum_probs=102.4
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCC-----------CHHHHHHH
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC-----------TAKELREI 227 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~-----------~~~~l~~~ 227 (415)
...|+|||+|++|+-+|..|++ .+ .+|.++.+........ ...+..+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~--------------------~G-~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~ 83 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK--------------------AG-LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEI 83 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh--------------------CC-CeEEEEecCCCCCCccccCccccccccchHHHHHH
Confidence 4679999999999999999986 34 4789998875432111 11122222
Q ss_pred HcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeE
Q 014990 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v 307 (415)
+..-++......... .... +..+...|..... +.|+++++++.+..+. .++++.+.++
T Consensus 84 l~~~gv~~~~~~~g~-------~~vd----~~~l~~~L~~~A~---------~~Gv~I~~~t~V~dl~--~~~~g~V~Gv 141 (257)
T PRK04176 84 LDEFGIRYKEVEDGL-------YVAD----SVEAAAKLAAAAI---------DAGAKIFNGVSVEDVI--LREDPRVAGV 141 (257)
T ss_pred HHHCCCCceeecCcc-------eecc----HHHHHHHHHHHHH---------HcCCEEEcCceeceee--EeCCCcEEEE
Confidence 222222111100000 0000 1122233333322 5689999998888876 3123367666
Q ss_pred EEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCC----CCc-----ccCCCCccccCCCceeeccCCCCCc
Q 014990 308 HFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN----GLP-----FDNHKGIVPNIRGRVLKNISGDSSQ 378 (415)
Q Consensus 308 ~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~----~~~-----~~~~~g~~~~~~G~i~v~~~~~~~t 378 (415)
........ ..|. ..+..++.++.||.|||....-.. ..+ .........+......+++ ..-
T Consensus 142 v~~~~~v~--~~g~-----~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~---t~~ 211 (257)
T PRK04176 142 VINWTPVE--MAGL-----HVDPLTIEAKAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVEN---TGE 211 (257)
T ss_pred EEcccccc--ccCC-----CCCcEEEEcCEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhc---CCe
Confidence 54321000 0010 113357999999999996652210 001 0000011111122333333 234
Q ss_pred ccCCeeeeecccc----CC--ccchhhhhhhHHHHHhhccc
Q 014990 379 VENGLYVCGWLKR----GP--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 379 ~~p~vfaiGD~~~----~~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
-+||+|++|-.+. .| .-++..=...|+.||+.|..
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 6999999997652 12 12333335578888887754
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=81.61 Aligned_cols=42 Identities=33% Similarity=0.521 Sum_probs=38.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|+|||||++||++|..|.+.| .+|+|+|+.+.+||...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCceee
Confidence 5678999999999999999999998 99999999999999753
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.6e-05 Score=73.72 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=25.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEE
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDII 50 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~li 50 (415)
||+|||||.||..||+.+++.| .+|.|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--AKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEE
Confidence 6999999999999999999999 999999
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=75.05 Aligned_cols=92 Identities=22% Similarity=0.279 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~V~~ 238 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLG--AEVTIVEALPRIL--------PG--EDKEISKLAERALKKRGIKIKTGAKAKK 238 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3578999999999999999999998 9999999887642 21 1234556667777788999988865521
Q ss_pred --------EEEecc----cccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSE----LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~----~~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+ ....+|.||+|+|. .|..
T Consensus 239 i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~-~p~~ 274 (462)
T PRK06416 239 VEQTDDGVTVTLEDGGKEETLEADYVLVAVGR-RPNT 274 (462)
T ss_pred EEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC-ccCC
Confidence 122222 23479999999998 4443
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.6e-05 Score=79.45 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=39.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
++|+|+|||.|||+||..|++.| ++|+|+|.++.+||.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC--CceEEEeccCccCceeeee
Confidence 68999999999999999999999 9999999999999986544
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=62.75 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=29.2
Q ss_pred EEECCCHHHHHHHHHHHHcC---CCceEEEEcCCCC
Q 014990 23 CVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPT 55 (415)
Q Consensus 23 vIIGgG~AGl~aA~~L~~~g---~~~~v~lie~~~~ 55 (415)
+|||||++|++++.+|.+.. +..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999983 5689999999654
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=73.98 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=64.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+.. +. ...+....+.+.++..+++++.+..+..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 204 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--KNVTLIHRSERILN-------KL--FDEEMNQIVEEELKKHEINLRLNEEVDS 204 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccCc-------cc--cCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4579999999999999999999998 89999998775411 11 1234556667777888999988766522
Q ss_pred E------EEecc-cccccCEEEEccCC
Q 014990 98 S------VSLSE-LRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ~------v~~~~-~~~~~d~lvlAtG~ 117 (415)
. +...+ ....+|.||+|+|.
T Consensus 205 i~~~~~~v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 205 IEGEERVKVFTSGGVYQADMVILATGI 231 (427)
T ss_pred EecCCCEEEEcCCCEEEeCEEEECCCc
Confidence 1 12222 23579999999998
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=74.52 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.++..+++++.++.+..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLG--SEVTILQRSDRLL--------PR--EEPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCcCC--------Cc--cCHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 478999999999999999999999 9999999887542 21 1234455666777778899988875421
Q ss_pred -------EEEecc----cccccCEEEEccCCCCCCC
Q 014990 98 -------SVSLSE----LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -------~v~~~~----~~~~~d~lvlAtG~~~~~~ 122 (415)
.+.... ....+|.||+|+|. .|..
T Consensus 234 ~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~-~p~~ 268 (463)
T TIGR02053 234 SVRGGGKIITVEKPGGQGEVEADELLVATGR-RPNT 268 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEEeECC-CcCC
Confidence 122211 23479999999998 4444
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=2e-05 Score=79.09 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=35.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.+..++|+|||||+||+++|..|++.| ++|+|||+.+.+
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCcc
Confidence 345789999999999999999999999 999999998653
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.2e-05 Score=76.12 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=42.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~ 62 (415)
-.++|+|+|||.+||++|++|++++|+..|+|+|.++++||+++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 478999999999999999999999998999999999999998765
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.7e-05 Score=77.15 Aligned_cols=34 Identities=41% Similarity=0.648 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||+||+++|..|++.| ++|+|||+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhccc
Confidence 58999999999999999999999 99999999865
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=73.85 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=65.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+... . ...++...+.+.++..+++++.++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l~~-------~--~~~~~~~~l~~~l~~~gI~v~~~~~v~~ 216 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLG--KNVRIIQLEDRILPD-------S--FDKEITDVMEEELRENGVELHLNEFVKS 216 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CcEEEEeCCcccCch-------h--cCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 4579999999999999999999998 899999987653210 1 1235566677778888999988776532
Q ss_pred E--------EEecccccccCEEEEccCC
Q 014990 98 S--------VSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ~--------v~~~~~~~~~d~lvlAtG~ 117 (415)
- +..++....+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~~~~~i~~d~vi~a~G~ 244 (444)
T PRK09564 217 LIGEDKVEGVVTDKGEYEADVVIVATGV 244 (444)
T ss_pred EecCCcEEEEEeCCCEEEcCEEEECcCC
Confidence 1 2223334579999999997
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.2e-05 Score=79.17 Aligned_cols=41 Identities=39% Similarity=0.480 Sum_probs=33.5
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
||||||||+||++||..+++.| .+|+|||+.+.+||....+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--~~VlLiE~~~~lGG~~t~~ 41 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--AKVLLIEKGGFLGGMATSG 41 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--S-EEEE-SSSSSTGGGGGS
T ss_pred CEEEECccHHHHHHHHHHHHCC--CEEEEEECCccCCCcceEC
Confidence 6999999999999999999999 9999999999998875433
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=79.37 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=36.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+|+|||||.|||+||..|++.| .+|+|+|+.+.+||...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCcee
Confidence 5999999999999999999999 99999999999999754
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.2e-05 Score=79.27 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=40.9
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCCCCCccc
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~~gg~~~ 61 (415)
....+++|+|||||.|||+||.+|.+.+ ++.+|+|+|+.+.+||.+.
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 3445789999999999999999999975 4589999999999998764
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.1e-05 Score=80.15 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=37.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC--CceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~--~~~v~lie~~~~~gg~~~ 61 (415)
+++|+|||||.|||+||..|.+.+| +.+|+|+|+.+.+||...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 4689999999999999999999922 399999999999998754
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.3e-05 Score=79.30 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=37.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.|||+||..|.+.| .+|+|+|+.+++||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g--~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDAS--FKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCceee
Confidence 47999999999999999999998 99999999999999764
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.4e-05 Score=80.56 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg~~~ 61 (415)
...++|+|||||++||+||.+|.+. | .+|+|+|+++.+||...
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g--~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHG--VNVLVTEARDRVGGNIT 53 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcC--CCEEEEecCCCCCCcee
Confidence 3567899999999999999999999 8 99999999999998754
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=73.71 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=65.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLG--AEVTILEALPAFL--------AA--ADEQVAKEAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCccC--------Cc--CCHHHHHHHHHHHHHcCcEEEeCcEEEE
Confidence 4579999999999999999999998 9999999887542 21 1234455666667777899888765421
Q ss_pred --------EEEecc-----cccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSE-----LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~-----~~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+ ....+|.|++|+|. .|..
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~-~p~~ 286 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR-VPNT 286 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC-ccCC
Confidence 122222 13479999999998 4443
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=73.32 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=64.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..+++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.+..+..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLG--VQVTLIYRGELIL--------RG--FDDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEeCCCCC--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4578999999999999999999998 9999999876531 21 1234555666777778999988865422
Q ss_pred --------EEEeccc-ccccCEEEEccCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...+. ...+|.||+|+|.
T Consensus 233 i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 233 ITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred EEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 1222222 3579999999998
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.9e-05 Score=76.27 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=40.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC----CCceEEEEcCCCCCCCccccCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVRSGV 64 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g----~~~~v~lie~~~~~gg~~~~~~ 64 (415)
...+|||||||||||+||++|.+.. .+.+|+++|+...+||....|.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 4678999999999999999997554 4689999999999999877663
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=73.61 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=66.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFG--SEVTVIERGPRLL--------PR--EDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCCC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4579999999999999999999999 9999999887642 11 1234556667777788999988765521
Q ss_pred --------EEEec--c--cccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLS--E--LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~--~--~~~~~d~lvlAtG~~~~~~ 122 (415)
.+... + ....+|.||+|+|. .|..
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~-~pn~ 273 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGR-VPNT 273 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCC-CcCC
Confidence 12211 1 13479999999998 4443
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=73.33 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.+++||||+|++|+.+|..|+++| .+|+++|+.+.+++.+.. .+....+.+.++..+++++.+..+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G--~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRG--KKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 689999999999999999999999 999999999988766542 35566777888888888877766411
Q ss_pred E----------EEeccc-ccccCEEEEccCCC
Q 014990 98 S----------VSLSEL-RQLYHVVVLAYGAE 118 (415)
Q Consensus 98 ~----------v~~~~~-~~~~d~lvlAtG~~ 118 (415)
. +..... ...+|.+++++|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 205 EGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred EcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 1 122222 24799999999983
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=73.55 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||+|+.|+.+|..|++.+ .+|+++++...+ +. ...++...+.+.+++.+++++.++.+..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g--~~Vtlv~~~~~l---------~~--~~~~~~~~l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLG--SRVTVLARSRVL---------SQ--EDPAVGEAIEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEECCCCC---------CC--CCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 579999999999999999999999 999999864321 11 1234556677778888999988865522
Q ss_pred -------EEEecccccccCEEEEccCCCCCCC
Q 014990 98 -------SVSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -------~v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+....+|.||+|+|. .|..
T Consensus 245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 275 (468)
T PRK14694 245 DYNGREFILETNAGTLRAEQLLVATGR-TPNT 275 (468)
T ss_pred EEcCCEEEEEECCCEEEeCEEEEccCC-CCCc
Confidence 12222334579999999998 4443
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.1e-05 Score=78.48 Aligned_cols=37 Identities=41% Similarity=0.555 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
....++|+||||||||+++|..|++.| ++|+|+|+..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 346789999999999999999999999 9999999875
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.1e-05 Score=79.61 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=37.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.+||+||..|++.| ++|+|+|+++.+||...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccc
Confidence 68999999999999999999999 99999999999998653
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=73.29 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALG--VKVTLINTRDRLL--------SF--LDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999887542 21 1234556667777777899888765522
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+. ...+|.|++|+|. .|..
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~ 274 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGR-TGNT 274 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecC-Cccc
Confidence 1222222 2479999999998 4443
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.2e-05 Score=77.00 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=34.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+..++|+||||||||+++|..|++.| ++|+|+|+.+.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCcc
Confidence 35679999999999999999999999 999999998754
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=71.98 Aligned_cols=92 Identities=13% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. |.. ..++...+.+.+++.+++++.++.+..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~gV~v~~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFG--SKVTILEAASLFL--------PRE--DRDIADNIATILRDQGVDIILNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCC--------CCc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4569999999999999999999999 9999999876431 221 234556677778888999988775522
Q ss_pred --------EEEecccccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
.+..++....+|.|++|+|. .|..
T Consensus 225 i~~~~~~v~v~~~~g~i~~D~vl~a~G~-~pn~ 256 (441)
T PRK08010 225 ISHHENQVQVHSEHAQLAVDALLIASGR-QPAT 256 (441)
T ss_pred EEEcCCEEEEEEcCCeEEeCEEEEeecC-CcCC
Confidence 12222334579999999998 4443
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00021 Score=72.58 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~il--------~~--~d~~~~~~~~~~l~~~gI~i~~~~~v~~ 232 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLG--SETHLVIRHERVL--------RS--FDSMISETITEEYEKEGINVHKLSKPVK 232 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCC--------cc--cCHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 3579999999999999999999999 9999999887642 11 1234556677777788999988765422
Q ss_pred ---------EEEeccc--ccccCEEEEccCCCCCCC
Q 014990 98 ---------SVSLSEL--RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ---------~v~~~~~--~~~~d~lvlAtG~~~~~~ 122 (415)
.+..++. ...+|.|++|+|. .|..
T Consensus 233 i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~-~pn~ 267 (450)
T TIGR01421 233 VEKTVEGKLVIHFEDGKSIDDVDELIWAIGR-KPNT 267 (450)
T ss_pred EEEeCCceEEEEECCCcEEEEcCEEEEeeCC-CcCc
Confidence 1222233 2478999999998 4443
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=71.02 Aligned_cols=36 Identities=39% Similarity=0.611 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
||+||||||||+++|..|.+..++.+|+|||+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 699999999999999999444444999999988654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00025 Score=72.10 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=66.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~L~~~GV~i~~~~~V~~ 233 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLG--SETHLFVRGDAPL--------RG--FDPDIRETLVEEMEKKGIRLHTNAVPKA 233 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCc--------cc--cCHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence 4579999999999999999999999 9999999877532 11 1234556677778888999988876522
Q ss_pred ---------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 ---------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ---------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.||+|+|. .|..
T Consensus 234 i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~-~p~~ 267 (450)
T PRK06116 234 VEKNADGSLTLTLEDGETLTVDCLIWAIGR-EPNT 267 (450)
T ss_pred EEEcCCceEEEEEcCCcEEEeCEEEEeeCC-CcCC
Confidence 1222222 2479999999998 4443
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.9e-05 Score=76.74 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+.++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~~ 38 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVPE 38 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCCc
Confidence 3579999999999999999999999 999999998753
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.6e-05 Score=69.84 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=35.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..|+|||+|+||++||..|+..| .+|++|||+.-.||.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCcccch
Confidence 46999999999999999999999 9999999998777654
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00026 Score=72.25 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. |.. ..++...+.+.+++.+++++.++.+..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYG--VDVTIVEFLDRAL--------PNE--DAEVSKEIAKQYKKLGVKILTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Ccc--CHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 3579999999999999999999999 9999999776532 221 234556667777788999998876521
Q ss_pred --------EEEec--cc---ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLS--EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~--~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.+... ++ ...+|.||+|+|. .|..
T Consensus 239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~-~pn~ 275 (466)
T PRK07818 239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF-APRV 275 (466)
T ss_pred EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc-ccCC
Confidence 12221 22 3479999999998 4443
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.1e-05 Score=78.08 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=36.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC----CCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g----~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.+||+||..|.+.+ ++.+|+|+|+.+++||...
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 57999999999999999999863 2379999999999999754
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.9e-05 Score=76.31 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 478999999999999999999999 9999999874
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.7e-05 Score=75.96 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++|+|||||+||+++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcc
Confidence 47999999999999999999999 999999998754
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.5e-05 Score=75.83 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=34.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+..++|+|||||++|+++|..|++.| .+|+|||+.+..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAG--ASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCCCC
Confidence 45679999999999999999999999 999999998653
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.8e-05 Score=79.17 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=35.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
|||||||.+||+||.+|++.| .+|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceE
Confidence 689999999999999999999 99999999999999754
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00037 Score=71.21 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=64.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..+.+.+ .+|+|+|+.+.+. |.. ..+....+.+.++..+++++.++.+..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G--~~Vtlie~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLG--AQVTVVEYLDRIC--------PGT--DTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCCCC--------CCC--CHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 4689999999999999999999999 9999999877542 221 124455667777778999988865421
Q ss_pred --------EEEec---c---cccccCEEEEccCC
Q 014990 98 --------SVSLS---E---LRQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~---~---~~~~~d~lvlAtG~ 117 (415)
.+... + ....+|.|++|+|.
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC
Confidence 11111 1 12478999999998
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.9e-05 Score=75.63 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 35689999999999999999999999 99999999863
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00034 Score=71.67 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+|+++...+ +. ...++...+.+.+++.+++++.++.+..
T Consensus 187 ~~k~vvVIGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~l---------~~--~d~~~~~~l~~~L~~~GV~i~~~~~V~~ 253 (479)
T PRK14727 187 LPASLTVIGSSVVAAEIAQAYARLG--SRVTILARSTLL---------FR--EDPLLGETLTACFEKEGIEVLNNTQASL 253 (479)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCCCC---------Cc--chHHHHHHHHHHHHhCCCEEEcCcEEEE
Confidence 3578999999999999999999999 999999864211 11 1234556677778888999988766522
Q ss_pred --------EEEecccccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+....+|.||+|+|. .|..
T Consensus 254 i~~~~~~~~v~~~~g~i~aD~VlvA~G~-~pn~ 285 (479)
T PRK14727 254 VEHDDNGFVLTTGHGELRAEKLLISTGR-HANT 285 (479)
T ss_pred EEEeCCEEEEEEcCCeEEeCEEEEccCC-CCCc
Confidence 12222334578999999998 4443
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00032 Score=73.37 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=65.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++...+ +. ...++...+.+.++..+++++.++.+..
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~l---------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~ 335 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLG--SKVTILARSTLF---------FR--EDPAIGEAVTAAFRAEGIEVLEHTQASQ 335 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCccc---------cc--cCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 3579999999999999999999999 999999974311 21 1234556777778888999988776522
Q ss_pred E--------EEecccccccCEEEEccCCCCCCC
Q 014990 98 S--------VSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ~--------v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
- +..++....+|.|++|+|. .|..
T Consensus 336 i~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 367 (561)
T PRK13748 336 VAHVDGEFVLTTGHGELRADKLLVATGR-APNT 367 (561)
T ss_pred EEecCCEEEEEecCCeEEeCEEEEccCC-CcCC
Confidence 1 2222334579999999998 4443
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.8e-05 Score=75.70 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=33.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHG--FSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 45689999999999999999999999 9999999875
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.4e-05 Score=75.21 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|+|||||+||+++|..|++.| .+|+|+|+.+.+
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSG--LRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCc
Confidence 3578999999999999999999999 999999998664
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.2e-05 Score=77.12 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=35.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+|+|||||+||++||..|.+.| .+|+|+|+.+.+||..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCc
Confidence 5899999999999999999999 9999999999999865
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.4e-05 Score=74.10 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=36.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||+||+++|..|++.| .+|+|+|+.+..||...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G--~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLN--KRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcee
Confidence 58999999999999999999988 99999999998888543
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00038 Score=71.68 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=66.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
.++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.+++.+++++.++.+..-
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMG--ATVDLFFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEecCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 578999999999999999999999 9999999876532 11 12345566667777889999888755221
Q ss_pred --------EEeccc-ccccCEEEEccCCCCCCC
Q 014990 99 --------VSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 99 --------v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
+...++ ...+|.|++|+|. .|..
T Consensus 271 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~ 302 (499)
T PLN02507 271 TKTEGGIKVITDHGEEFVADVVLFATGR-APNT 302 (499)
T ss_pred EEeCCeEEEEECCCcEEEcCEEEEeecC-CCCC
Confidence 222222 3579999999998 4443
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.8e-05 Score=75.20 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|+|||||++|+++|..|++.| .+|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAG--LSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCCC
Confidence 35679999999999999999999999 99999999864
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00044 Score=70.27 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=62.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++.+.+.++++ .+++++.+..+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~~~ll--------~~--~d~~~~~~l~~l~~-~~v~i~~~~~v~~ 231 (451)
T PRK07846 165 LPESLVIVGGGFIAAEFAHVFSALG--VRVTVVNRSGRLL--------RH--LDDDISERFTELAS-KRWDVRLGRNVVG 231 (451)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHh-cCeEEEeCCEEEE
Confidence 3579999999999999999999998 9999999887542 11 11234444444443 4688887765521
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+. ...+|.|++|+|. .|..
T Consensus 232 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 264 (451)
T PRK07846 232 VSQDGSGVTLRLDDGSTVEADVLLVATGR-VPNG 264 (451)
T ss_pred EEEcCCEEEEEECCCcEeecCEEEEEECC-ccCc
Confidence 1222222 3479999999998 4444
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.5e-05 Score=75.31 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~---g~~~~v~lie~~ 53 (415)
..++|+||||||||+++|..|++. | ++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 467899999999999999999998 8 999999995
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.8e-05 Score=74.76 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+++|+|||||+||+++|..|++.| ++|+|+|+.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCccc
Confidence 578999999999999999999999 999999998654
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.7e-05 Score=74.81 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=32.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+|+|||||+||+++|..|++.| ++|+|+|+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG--LKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC--CEEEEEeCCCcc
Confidence 5999999999999999999999 999999999764
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00044 Score=70.61 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=65.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. +.. ..+....+.+.++..+++++.+..+..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELG--VKVTLVSSRDRVL--------PGE--DADAAEVLEEVFARRGMTVLKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCcCC--------CCC--CHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence 468999999999999999999999 9999999876532 221 224455667777888999988765421
Q ss_pred -------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 -------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.|++|+|. .|..
T Consensus 245 ~~~~~~~~v~~~~g~~l~~D~vl~a~G~-~pn~ 276 (466)
T PRK07845 245 ERTGDGVVVTLTDGRTVEGSHALMAVGS-VPNT 276 (466)
T ss_pred EEeCCEEEEEECCCcEEEecEEEEeecC-CcCC
Confidence 1222222 2479999999998 4443
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.1e-05 Score=74.95 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCc
Confidence 578999999999999999999999 99999999865
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00046 Score=69.62 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=64.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC------------CCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g------------~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (415)
++|+|||||+.|+.+|..|+... ++.+|+||++.+.+. +. ..........+.+++.++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--------~~--~~~~~~~~~~~~L~~~gV 243 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--------GS--FDQALRKYGQRRLRRLGV 243 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--------cc--CCHHHHHHHHHHHHHCCC
Confidence 58999999999999999987520 238999999877542 21 123456677778888899
Q ss_pred EEEeceEece----EEEecccc-cccCEEEEccCC
Q 014990 88 SFFGNVTLGS----SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 88 ~~~~~~~v~~----~v~~~~~~-~~~d~lvlAtG~ 117 (415)
+++.+..+.. .+..+++. ..+|.+|+|+|.
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCC
Confidence 9998876632 34444443 479999999997
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.3e-05 Score=74.90 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.++|+||||||+|+++|..|++.| ++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 578999999999999999999999 999999997
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.60 E-value=6.7e-05 Score=74.78 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 368999999999999999999999 99999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.3e-05 Score=75.10 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++|+|||||+||+++|..|++.| ++|+|||+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCcc
Confidence 58999999999999999999999 999999998653
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.9e-05 Score=75.02 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSG--LEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 368999999999999999999999 9999999876
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.58 E-value=8e-05 Score=76.63 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=37.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||+|.+|+++|..|++.| .+|+|+|+++.+||...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCcee
Confidence 47999999999999999999999 99999999999998754
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.58 E-value=9.1e-05 Score=78.77 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=39.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..+.++|+|||||+||++||..|++.| ++|+|+|+.+.+||...
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSFG--FKVVVLEGRNRPGGRVY 200 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHcC--CcEEEEecCccCcCcee
Confidence 346789999999999999999999999 99999999998888643
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00039 Score=75.70 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=66.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++++|||||+.|+.+|..|++.+ .+|+|+++.+.+. + .....+....+.+.++..+++++.+..+..
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G--~~VtvVe~~~~ll--------~-~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~ 212 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLG--VETHVIEFAPMLM--------A-EQLDQMGGEQLRRKIESMGVRVHTSKNTLE 212 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeccccch--------h-hhcCHHHHHHHHHHHHHCCCEEEcCCeEEE
Confidence 4578999999999999999999999 9999999876431 1 112234456677778888999988875522
Q ss_pred E----------EEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 S----------VSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ~----------v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
- +...++ ...+|.||+|+|. .|..
T Consensus 213 I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~-rPn~ 247 (847)
T PRK14989 213 IVQEGVEARKTMRFADGSELEVDFIVFSTGI-RPQD 247 (847)
T ss_pred EEecCCCceEEEEECCCCEEEcCEEEECCCc-ccCc
Confidence 1 222233 2479999999998 4443
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=8e-05 Score=74.19 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 47999999999999999999999 99999999865
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00041 Score=75.30 Aligned_cols=93 Identities=14% Similarity=0.172 Sum_probs=65.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. .........+.+.++..+++++.+..+..
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G--~~Vtvv~~~~~ll--------~~-~ld~~~~~~l~~~l~~~GV~v~~~~~v~~ 207 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLG--MDVSVIHHAPGLM--------AK-QLDQTAGRLLQRELEQKGLTFLLEKDTVE 207 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEccCCchh--------hh-hcCHHHHHHHHHHHHHcCCEEEeCCceEE
Confidence 4578999999999999999999999 9999999776431 11 01123345566677788999988865421
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.||+|+|. .|..
T Consensus 208 i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~-~Pn~ 240 (785)
T TIGR02374 208 IVGATKADRIRFKDGSSLEADLIVMAAGI-RPND 240 (785)
T ss_pred EEcCCceEEEEECCCCEEEcCEEEECCCC-CcCc
Confidence 1333333 3479999999998 4443
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.9e-05 Score=73.44 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+++|+|||||++|+++|..|++.| ++|+|||+.+.+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Confidence 368999999999999999999999 999999998654
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.8e-05 Score=74.30 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+||||||+|+++|..|++.| ++|+|+|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 3578999999999999999999999 999999986
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00074 Score=70.01 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||||+||+.+|..+++.+ .+|+|+|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G--~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMG--AKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CCEEEEeccc
Confidence 58999999999999999999999 9999999863
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00013 Score=75.48 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=38.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---CCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g---~~~~v~lie~~~~~gg~~~ 61 (415)
++.++|+|||||.|||+||.+|.+.| +..+|+|+|+.+.+||.+.
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 35678999999999999999999875 2379999999999998753
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=71.37 Aligned_cols=79 Identities=23% Similarity=0.207 Sum_probs=57.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+.++|+|||+|++|+++|..|+++| .+|+++|+.+. +....+.+.++..+++++.+....
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~-----------------~~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDD-----------------ERHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCch-----------------hhhHHHHHHHHHcCCEEEECCCcc-
Confidence 4678999999999999999999999 99999997642 112233344566688887665432
Q ss_pred EEEecccccccCEEEEccCCCCCCCC
Q 014990 98 SVSLSELRQLYHVVVLAYGAESDRAL 123 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~~~~~~~ 123 (415)
....+|.||+++|. .|..|
T Consensus 75 ------~~~~~D~Vv~s~Gi-~~~~~ 93 (480)
T PRK01438 75 ------LPEDTDLVVTSPGW-RPDAP 93 (480)
T ss_pred ------ccCCCCEEEECCCc-CCCCH
Confidence 22468999999998 55554
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00013 Score=72.01 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=38.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....+|||||||.||++||.+|...+ ..+++|+|..++.||-..
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIH 62 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEe
Confidence 45679999999999999999999777 468999999999998643
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00068 Score=69.10 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=64.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+.. . ...++...+.+.+++. ++++.+..+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l~--------~--~d~~~~~~~~~~l~~~-I~i~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLG--VKVTVFERGDRILP--------L--EDPEVSKQAQKILSKE-FKIKLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCc--------c--hhHHHHHHHHHHHhhc-cEEEcCCEEEE
Confidence 4579999999999999999999999 99999998876432 1 1234555666667776 88877765421
Q ss_pred -------EEEe----cc-cccccCEEEEccCCCCCCC
Q 014990 98 -------SVSL----SE-LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -------~v~~----~~-~~~~~d~lvlAtG~~~~~~ 122 (415)
.+.. .+ ....+|.|++|+|. .|..
T Consensus 235 i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~p~~ 270 (460)
T PRK06292 235 VEKSGDEKVEELEKGGKTETIEADYVLVATGR-RPNT 270 (460)
T ss_pred EEEcCCceEEEEEcCCceEEEEeCEEEEccCC-ccCC
Confidence 1221 11 12479999999998 4444
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.9e-05 Score=73.88 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G--~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 5689999999999999999999998 99999999754
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0001 Score=73.50 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G--~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcC--CCEEEEEcCCc
Confidence 468999999999999999999999 99999999874
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=76.28 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G--~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRG--VDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 35678999999999999999999999 9999999885
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=74.80 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=39.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~~~ 61 (415)
+..++|+|||||++||+||.+|++.| . +|+|+|+.+.+||.+.
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g--~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAG--IEDILILEATDRIGGRMR 67 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEecCCCCCCCcce
Confidence 46789999999999999999999998 7 6999999999998754
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00064 Score=69.71 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=63.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
...+++|||||+.|+.+|..|++.+ .+|+|+++. .+ + +.+ ..++...+.+.++..+++++.++.+..
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~---l-----~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRS-IL---L-----RGF--DQDCANKVGEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhC--CcEEEEEec-cc---c-----ccc--CHHHHHHHHHHHHHcCCEEEeCceEEE
Confidence 3468999999999999999999999 999999863 21 1 221 234556667777888999988764311
Q ss_pred --------EEEeccc----ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL----RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~----~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+. ...+|.|++|+|. .|..
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~-~pn~ 281 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR-DACT 281 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecC-CcCC
Confidence 1222222 3579999999997 4443
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00074 Score=70.25 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=63.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
.++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +.+ ..++.+.+.+.+++.+++++.+..+..-
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G--~~Vtli~~~~~il--------~~~--d~~i~~~l~~~L~~~GV~i~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLG--AESYIFARGNRLL--------RKF--DETIINELENDMKKNNINIITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CcEEEEEeccccc--------ccC--CHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 689999999999999999999999 9999999877532 221 2345566677777889998887755211
Q ss_pred ---------EEecc-c-ccccCEEEEccCC
Q 014990 99 ---------VSLSE-L-RQLYHVVVLAYGA 117 (415)
Q Consensus 99 ---------v~~~~-~-~~~~d~lvlAtG~ 117 (415)
+...+ . ...+|.|++|+|.
T Consensus 305 ~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 305 EKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred EecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 11111 1 2478999999997
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=72.77 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+|+|||||++|+++|..|++.| ++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC--CeEEEecCCC
Confidence 58999999999999999999999 9999999864
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00012 Score=73.13 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+|+|||||+||+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 68999999999999999999999 99999999865
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00083 Score=68.87 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~---g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
..++|+|||||+.|+.+|..+... + .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G--~~Vtli~~~~~il--------~~--~d~~~~~~l~~~L~~~GI~i~~~~~ 253 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRG--GKVTLCYRNNMIL--------RG--FDSTLRKELTKQLRANGINIMTNEN 253 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCC--CeEEEEecCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEcCCE
Confidence 457899999999999999877654 6 8999999887642 22 1235566777778888999988875
Q ss_pred ece---------EEEeccc-ccccCEEEEccCC
Q 014990 95 LGS---------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 95 v~~---------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
+.. .+...+. ...+|.|++|+|.
T Consensus 254 v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 254 PAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred EEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 422 1222222 3479999999997
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00017 Score=70.21 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+|+|||||.+|+++|.+|++.| .+|+|+|+....+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeeccccc
Confidence 6999999999999999999999 9999999994433
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00083 Score=68.68 Aligned_cols=91 Identities=19% Similarity=0.357 Sum_probs=62.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. |. ...++...+.+.++.. +.++.+..+..
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~il--------~~--~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLG--SEVDVVEMFDQVI--------PA--ADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCC--------Cc--CCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 3579999999999999999999999 9999999887542 22 1234455556666655 77777655421
Q ss_pred --------EEEecc--c---ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSE--L---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~--~---~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+ . ...+|.||+|+|. .|..
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~pn~ 276 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR-VPNG 276 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc-cccC
Confidence 122211 1 2479999999998 4443
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00086 Score=69.08 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++. .+ + +. ...++...+.+.++..+++++.++.+..
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~---l-----~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 247 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNELG--FDVTVAVRS-IP---L-----RG--FDRQCSEKVVEYMKEQGTLFLEGVVPIN 247 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcC-cc---c-----cc--CCHHHHHHHHHHHHHcCCEEEcCCeEEE
Confidence 3468999999999999999999999 999999853 21 1 11 1234556677778888999888764321
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.|++|+|. .|..
T Consensus 248 v~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~ 280 (499)
T PTZ00052 248 IEKMDDKIKVLFSDGTTELFDTVLYATGR-KPDI 280 (499)
T ss_pred EEEcCCeEEEEECCCCEEEcCEEEEeeCC-CCCc
Confidence 1222222 2479999999998 4443
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=77.24 Aligned_cols=43 Identities=33% Similarity=0.485 Sum_probs=39.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
...++|+|||||+||+++|..|.+.| ++|+|+|+.+.+||.+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeccccCCCccc
Confidence 35788999999999999999999999 99999999999988643
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00093 Score=67.95 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=61.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|++|++.+.+. +. ...++...+.+..+ .+++++.+..+..
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~ll--------~~--~d~~~~~~l~~~~~-~gI~i~~~~~V~~ 234 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSALG--TRVTIVNRSTKLL--------RH--LDEDISDRFTEIAK-KKWDIRLGRNVTA 234 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCccc--------cc--cCHHHHHHHHHHHh-cCCEEEeCCEEEE
Confidence 3578999999999999999999999 9999999877542 11 11233444444444 4688877665421
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.|++|+|. .|..
T Consensus 235 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 267 (452)
T TIGR03452 235 VEQDGDGVTLTLDDGSTVTADVLLVATGR-VPNG 267 (452)
T ss_pred EEEcCCeEEEEEcCCCEEEcCEEEEeecc-CcCC
Confidence 1222222 3479999999998 4443
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00019 Score=74.61 Aligned_cols=42 Identities=36% Similarity=0.468 Sum_probs=38.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
.+++|+|||||++|+++|..|.+.| ++|+|+|+.+.+||.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g--~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CeeEEEecCCCCCCcee
Confidence 3469999999999999999999999 99999999999988653
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=69.39 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|+|||+|.+||+||+.|.++ ++|||||...+.||...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCccc
Confidence 578899999999999999999998 79999999999988653
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=73.61 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=29.8
Q ss_pred CeEEEECCCHHHHHHHHHHHH----cCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLK----AHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~----~g~~~~v~lie~~ 53 (415)
++|+||||||+|+++|..|++ .| ++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G--~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKD--LKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCC--CeEEEEeCC
Confidence 579999999999999999998 67 999999994
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=72.83 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=32.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
||||||+|.||++||..+++.| .+|+|+|+.+..|+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeecccccc
Confidence 6999999999999999999999 999999999876653
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00021 Score=70.39 Aligned_cols=42 Identities=31% Similarity=0.311 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+...+|+|||+|.+||++|..|.+.| ++|+|+|.++++||-.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCcee
Confidence 57889999999999999999999999 9999999999988854
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00019 Score=71.92 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++|+|||||..|+++|.+|++.| .+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 58999999999999999999998 999999998753
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00021 Score=71.55 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=35.1
Q ss_pred ccCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCc-eEEEEcCCCC
Q 014990 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKA-HQEA-QVDIIDRLPT 55 (415)
Q Consensus 13 ~~~~~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~-~v~lie~~~~ 55 (415)
.++....++|+|||||..|+++|++|++. | . +|+|+|+...
T Consensus 24 ~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~~ 66 (407)
T TIGR01373 24 SPEPKPTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGWL 66 (407)
T ss_pred CCCCCccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEcccc
Confidence 44455788999999999999999999996 6 5 8999999753
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00019 Score=74.90 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G--~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQG--VPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence 35679999999999999999999999 99999999864
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00018 Score=72.30 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
++|+|||||+||+++|..|++.| ..+|+|+|+.+.+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g-~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHS-HLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC-CCCEEEEecCCcCC
Confidence 47999999999999999999986 14999999987643
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=61.64 Aligned_cols=201 Identities=17% Similarity=0.200 Sum_probs=100.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCC-------C----CHHHHHHH
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-------C----TAKELREI 227 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~-------~----~~~~l~~~ 227 (415)
.-.|+|||+|++|+-+|..|++ .+ .+|.++.|+...... | ......+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~--------------------~G-~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~ 79 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK--------------------NG-LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEI 79 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCCCCCccccCCCcceecccccchHHHH
Confidence 4579999999999999999986 34 589999887543211 1 01111222
Q ss_pred HcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCC--Cee
Q 014990 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVS 305 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~--~v~ 305 (415)
+...++......... .... +..+...|..... +.|++++++..+.++. . +++ .+.
T Consensus 80 l~~~gi~~~~~~~g~--------~~~~---~~el~~~L~~~a~---------e~GV~I~~~t~V~dli--~-~~~~~~V~ 136 (254)
T TIGR00292 80 LDEFGIRYEDEGDGY--------VVAD---SAEFISTLASKAL---------QAGAKIFNGTSVEDLI--T-RDDTVGVA 136 (254)
T ss_pred HHHCCCCeeeccCce--------EEee---HHHHHHHHHHHHH---------HcCCEEECCcEEEEEE--E-eCCCCceE
Confidence 222222111110000 0000 0112222322222 5679999998888876 3 233 466
Q ss_pred eEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccC----CCCcccCC----CCc---cccCCCceeeccCC
Q 014990 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV----NGLPFDNH----KGI---VPNIRGRVLKNISG 374 (415)
Q Consensus 306 ~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~----~~~~~~~~----~g~---~~~~~G~i~v~~~~ 374 (415)
++......... .|. ..+..++.+++||.|||...... ..+++... .|. -.+..-...+++
T Consensus 137 GVv~~~~~v~~--~g~-----~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~-- 207 (254)
T TIGR00292 137 GVVINWSAIEL--AGL-----HVDPLTQRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHEN-- 207 (254)
T ss_pred EEEeCCccccc--cCC-----CCCCEEEEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhc--
Confidence 76553210000 010 11235899999999999765220 00011000 000 001001112222
Q ss_pred CCCcccCCeeeeecccc----CC--ccchhhhhhhHHHHHhhccc
Q 014990 375 DSSQVENGLYVCGWLKR----GP--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 375 ~~~t~~p~vfaiGD~~~----~~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
..--+||+|++|-.+. .| .-++..=+..|+.||+.|.+
T Consensus 208 -t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 208 -TREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred -cCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 2345899999996652 12 12343345688888887764
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0002 Score=74.56 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=34.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G--~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYG--VRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 46789999999999999999999999 99999999864
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0011 Score=68.88 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.+..+..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g--~~Vtlv~~~~~il--------~~--~d~~~~~~l~~~L~~~GV~i~~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLK--SDVHVFIRQKKVL--------RG--FDEEVRDFVAEQMSLRGIEFHTEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeccccc--------cc--cCHHHHHHHHHHHHHCCcEEEeCCEEEE
Confidence 4679999999999999999999998 9999999876532 21 1234555666777788999988765422
Q ss_pred E---------EEeccccc-ccCEEEEccCCC
Q 014990 98 S---------VSLSELRQ-LYHVVVLAYGAE 118 (415)
Q Consensus 98 ~---------v~~~~~~~-~~d~lvlAtG~~ 118 (415)
. +...+... .+|.|++|+|..
T Consensus 319 i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 319 IIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred EEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 1 11122222 489999999983
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00023 Score=72.71 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+...+|||||+|.||++||..+++.| .+|+|+||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G--~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAG--ASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 35679999999999999999999999 99999999863
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00024 Score=74.25 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=39.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....++|+|||||.+|+++|.+|.+.| .+|+|+|+.+.+||...
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g--~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAG--HKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCCCCCcce
Confidence 345788999999999999999999999 99999999998888653
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00021 Score=73.66 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+...++|+|||||++|+++|..|++.| .+|+|+|+...
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G--~~V~vlEr~~~ 77 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDG--RRVHVIERDLR 77 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcC--CeEEEEECcCC
Confidence 3456889999999999999999999999 99999999753
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00021 Score=73.71 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=35.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|||||+|.||++||..+++.| .+|+|+||.+..||
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
Confidence 4679999999999999999999999 99999999987665
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00018 Score=73.54 Aligned_cols=39 Identities=36% Similarity=0.431 Sum_probs=36.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+|+|||||.+|+++|..|.+.| ++|+|+|+.+.+||...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAG--HEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCceee
Confidence 5899999999999999999999 99999999999998654
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00034 Score=70.61 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|+.|+.+|..|.+ .+ ..|+++.|.+.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~--------------------~G-~~Vtv~e~~~~ 157 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSR--------------------AG-HDVTVFERVAL 157 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHh--------------------CC-CeEEEeCCcCC
Confidence 67999999999999999999996 33 58999888753
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00023 Score=70.41 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=32.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++|+|||||.+|+++|++|+++| .+|+|+|+.+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCC
Confidence 47999999999999999999999 999999997643
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00022 Score=70.76 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+|||||++|+.+|..|++.| ++|+|||+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G--l~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG--VPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCcc
Confidence 468999999999999999999999 999999987643
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00025 Score=70.04 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+|||||.+|+++|.+|++.| .+|+|+|+....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEecccCC
Confidence 578999999999999999999999 999999998654
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00021 Score=75.10 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+..+|+|||||+||+++|..|++.| ++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~G--i~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKG--FDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEeccc
Confidence 35689999999999999999999999 9999999864
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00022 Score=74.16 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++..++|+|||||++|+++|..|++.| .+|+|+|+..
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G--~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQG--RKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcC--CEEEEEcccc
Confidence 346789999999999999999999999 9999999875
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00022 Score=75.48 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~ 55 (415)
+..++|+||||||+||++|..|++. | ++|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~G--i~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPD--ITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCC--CcEEEEEcCCC
Confidence 4578999999999999999999995 8 99999998853
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00024 Score=70.83 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
++|+|||||.+|+++|++|+++.|+.+|+|+|+.+.++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 68999999999999999999993339999999986543
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=64.30 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=71.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
..+|+++|+|+.|+.+|..|.... .+||+|++++.+. |. .....+...+..++++.++++++++.+..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~--~~VT~V~~e~~~~--------~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l 281 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKA--KSVTVVFPEPWLL--------PR-LFGPSIGQFYEDYYENKGVKFYLGTVVSSL 281 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcC--ceEEEEccCccch--------hh-hhhHHHHHHHHHHHHhcCeEEEEecceeec
Confidence 678999999999999999999998 9999999887542 21 12234566777888888999999887632
Q ss_pred ---------EEEecccc-cccCEEEEccCCCCCCCCCCC
Q 014990 98 ---------SVSLSELR-QLYHVVVLAYGAESDRALGIP 126 (415)
Q Consensus 98 ---------~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~ 126 (415)
.+.+.++. ..+|.||+++|+ .|......
T Consensus 282 ~~~~~Gev~~V~l~dg~~l~adlvv~GiG~-~p~t~~~~ 319 (478)
T KOG1336|consen 282 EGNSDGEVSEVKLKDGKTLEADLVVVGIGI-KPNTSFLE 319 (478)
T ss_pred ccCCCCcEEEEEeccCCEeccCeEEEeecc-cccccccc
Confidence 23334443 379999999999 55554444
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=69.34 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHh-hccCeEEEeceEece
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLGS 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~ 97 (415)
.++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. |. ...++...+.+.+ +..+++++.+..+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G--~eVTLIe~~~~ll--------~~--~d~eis~~l~~~ll~~~GV~I~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALG--SEVVSFEYSPQLL--------PL--LDADVAKYFERVFLKSKPVRVHLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEcCCEEEE
Confidence 568999999999999999999999 9999999887642 21 1123444445443 556888888765421
Q ss_pred --------EEEe--c-------cc---------ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSL--S-------EL---------RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~--~-------~~---------~~~~d~lvlAtG~~~~~~ 122 (415)
.+.+ . .. ...+|.|++|+|. .|..
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr-~Pnt 429 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR-KPNT 429 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc-ccCC
Confidence 0211 1 01 3478999999998 4443
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00031 Score=72.28 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=36.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...+|||||+|.||++||.++++.| .+|+|+||.+..||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCcc
Confidence 4679999999999999999999999 9999999998766543
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00031 Score=72.45 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=35.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+..++|+|||||..|+++|..|+++| .+|+|+|+++..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG--~~V~LlEk~d~~~G 43 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRG--LKVLLCEKDDLAQG 43 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCC
Confidence 45689999999999999999999999 99999999975443
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00032 Score=69.52 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+.+++|+|||||.+|+++|++|++.| .+|+++|+....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCccCC
Confidence 36789999999999999999999999 8999999887544
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00025 Score=69.66 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc---CCEEEEECCCc
Confidence 37899999999999999999875 79999998864
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0014 Score=62.30 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
+|+|||+|++|+.+|..|.+ .+ .+|+++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~--------------------~g-~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR--------------------AN-LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEeccC
Confidence 58999999999999999986 34 4799998764
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00035 Score=72.12 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|+|||||..|+++|..|+++| .+|+|||+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG--l~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRG--LSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCC
Confidence 5689999999999999999999999 99999999865443
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=63.34 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=61.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc----CCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~----g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
..++|+|||+|++|+.+|..|.+. +...+|+|+. .+.+. +. ...+....+.+.+++.+++++.++
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l--------~~--~~~~~~~~~~~~l~~~gV~v~~~~ 212 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL--------PG--FPAKVRRLVLRLLARRGIEVHEGA 212 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCC
Confidence 456899999999999999999863 2124899993 32211 11 122445566777888899999887
Q ss_pred Eece----EEEeccc-ccccCEEEEccCCC
Q 014990 94 TLGS----SVSLSEL-RQLYHVVVLAYGAE 118 (415)
Q Consensus 94 ~v~~----~v~~~~~-~~~~d~lvlAtG~~ 118 (415)
.+.. .+.+.++ ...+|.||+|+|..
T Consensus 213 ~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 213 PVTRGPDGALILADGRTLPADAILWATGAR 242 (364)
T ss_pred eeEEEcCCeEEeCCCCEEecCEEEEccCCC
Confidence 6532 2444333 35799999999983
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00027 Score=70.02 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+|+||||||||+++|..|++.| +++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G-~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLG-KIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCC-CceEEEEeCCCc
Confidence 5999999999999999999985 389999999864
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00033 Score=71.40 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|+|||||..|+++|++|++.+|+.+|+|+|++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 35799999999999999999999844499999999754
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00036 Score=68.76 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||.+|+++|++|++.+ .+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G--~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRG--LSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 47999999999999999999998 99999999864
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00033 Score=69.99 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCC--CceEEEEcCCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLP 54 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~--~~~v~lie~~~ 54 (415)
..+..++|+||||||+|+++|..|++.|- +.+|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34567899999999999999999999861 25899999975
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00034 Score=70.23 Aligned_cols=34 Identities=41% Similarity=0.559 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||.+|+++|.+|++.+ .+|+|+|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 47999999999999999999998 99999999753
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00036 Score=71.53 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+..++|+|||||..|+++|++|++.+|+.+|+|+||.+.+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 4668999999999999999999998666999999998653
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0024 Score=61.78 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. .. ......+.+.++..++++..+..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~--~~Vtlv~~~~~~~--------~~----~~~~~~~~~~l~~~gV~i~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR--------AE----KILIKRLMDKVENGNIILHTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEECCccC--------CC----HHHHHHHHhhccCCCeEEEeCCEEEE
Confidence 4679999999999999999999998 9999999876421 11 23345566667778898888765411
Q ss_pred ---------EEEecc-------cccccCEEEEccCCC
Q 014990 98 ---------SVSLSE-------LRQLYHVVVLAYGAE 118 (415)
Q Consensus 98 ---------~v~~~~-------~~~~~d~lvlAtG~~ 118 (415)
.+...+ ....+|.||+|+|..
T Consensus 211 v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred EEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 122221 124789999999983
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00039 Score=68.81 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=32.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+|+|||||+||+++|..|++..++.+|+++|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 69999999999999999998723399999999876554
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00039 Score=71.87 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+| ||++||.++++.| .+|+|||+.+..||
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 46799999999 9999999999999 99999999876554
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00051 Score=72.18 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
.+.+|||||+|.||++||..+++.| .+|+|+||.+..+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lieK~~~~~ 39 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAG--VHVDLFSLVPVKR 39 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcC--CcEEEEEccCCCC
Confidence 3568999999999999999999998 9999999986543
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00051 Score=72.02 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..+|||||||.||++||..+++.+++.+|+|+||....+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 468999999999999999999886558999999986533
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=60.34 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..++|+|||+|++|+-+|..|.+ .| .+++++.++.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--------------------~G-~~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--------------------EG-HTVVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--------------------cC-CeEEEEecCC
Confidence 56899999999999999999986 34 4799998875
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00055 Score=72.24 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+|.||++||..+++.| .+|+|+||....++
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELG--YKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEeccCCCCC
Confidence 3679999999999999999999998 99999999865443
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00061 Score=72.73 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+|||||.+|+++|++|+++| .+|+|+|+...+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G--~~V~VlE~~~~~ 295 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRG--WQVTLYEADEAP 295 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CeEEEEecCCCc
Confidence 369999999999999999999999 999999998543
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00011 Score=64.83 Aligned_cols=43 Identities=30% Similarity=0.368 Sum_probs=38.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..+|+|||+|.|||++|+.+.++.|+.+|.|||..-.+||-..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 5689999999999999999999999999999999877766543
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00065 Score=69.37 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|||||+|.||++||..+++.| .+|+|+|+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G--~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKG--FDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 79999999999999999999998 99999999753
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00058 Score=72.21 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..+|||||+|.||++||..+++.| .+|+|+||....+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G--~~VilveK~~~~~ 86 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTR 86 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcC--CcEEEEEcCCCCC
Confidence 568999999999999999999998 9999999986543
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00073 Score=72.65 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=39.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
...++|+|||||++|+++|..|.+.+ .+|+|+|+.+.+||...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G--~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCC--CcEEEEEccCcCCCCcc
Confidence 35789999999999999999999999 99999999999998654
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0026 Score=60.36 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=32.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
....+|+|||+|.-|+++|+.|++++ .++.|+|+.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g--~killLeqf~ 40 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRG--DKILLLEQFP 40 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcC--CeEEEEeccC
Confidence 35678999999999999999999999 9999999874
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00066 Score=70.80 Aligned_cols=40 Identities=30% Similarity=0.305 Sum_probs=35.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC--CCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--TPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~--~~gg~ 59 (415)
...+|||||+|.||++||..+++.| .+|+|+|+.+ ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G--~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAG--KRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCCCc
Confidence 4578999999999999999999999 9999999998 55553
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0006 Score=68.09 Aligned_cols=35 Identities=29% Similarity=0.275 Sum_probs=31.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.+|+|||||.||+++|..|++.| .+|+|||+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G--~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAG--VPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEeccccc
Confidence 37999999999999999999999 999999976553
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00076 Score=70.26 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||..|+++|..|+++| .+|+|||+.+.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG--~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRG--LRCILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence 4689999999999999999999999 99999999764
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0017 Score=64.91 Aligned_cols=126 Identities=16% Similarity=0.218 Sum_probs=62.3
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc-------------------------
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------------------------- 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~------------------------- 215 (415)
+|+|||+|++|+=+|..+++ .+ .+|.++.|....
T Consensus 2 dviIIGgGaAGl~aA~~aa~--------------------~g-~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~ 60 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE--------------------KG-ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFL 60 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH--------------------TT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEE
T ss_pred cEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEeCCcccccceeecCCCCccccccccchhhHh
Confidence 58999999999999999975 12 355555554211
Q ss_pred -------------cCCCCHHHHHHHHcCCCeeEEEc-ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce
Q 014990 216 -------------QAACTAKELREILGIKNLYVHIR-EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (415)
Q Consensus 216 -------------~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (415)
...|..+.+.+.+...++..... ...++|.......+ .+.|..... +.
T Consensus 61 ~~~~~~~~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~V---------v~~L~~~l~---------~~ 122 (409)
T PF03486_consen 61 SGYGRNPKFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSV---------VDALLEELK---------RL 122 (409)
T ss_dssp CS-TBTTTCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHH---------HHHHHHHHH---------HH
T ss_pred hhcccchHHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHH---------HHHHHHHHH---------Hc
Confidence 11123355555666667666543 33344333222222 233333222 56
Q ss_pred eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 282 ~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
|+++++++.+..+. . +++.+-.|.+. +..++.||.||+|+|...
T Consensus 123 gv~i~~~~~V~~i~--~-~~~~~f~v~~~------------------~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 123 GVEIHFNTRVKSIE--K-KEDGVFGVKTK------------------NGGEYEADAVILATGGKS 166 (409)
T ss_dssp T-EEE-S--EEEEE--E-ETTEEEEEEET------------------TTEEEEESEEEE----SS
T ss_pred CCEEEeCCEeeeee--e-cCCceeEeecc------------------CcccccCCEEEEecCCCC
Confidence 89999999999886 3 34443444431 223899999999999765
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00079 Score=67.04 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=37.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..+||+|||||..|+++|..|.+..|+.+|+|+||.+.++.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 56899999999999999999999999999999999977553
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00076 Score=68.06 Aligned_cols=43 Identities=21% Similarity=0.107 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++.++|+|||+|.+|+.+|..|++.| .+|.++|++++.||...
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccc
Confidence 45789999999999999999999999 99999999999998765
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00068 Score=69.39 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+|+|||||.+|+++|..|++..|+.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 479999999999999999999855599999999764
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00069 Score=70.46 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=34.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
...+|||||+|.||++||..+++.| .+|+|+||....+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G--~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAG--RRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CeEEEEEccCCCC
Confidence 4689999999999999999999998 9999999987654
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00082 Score=70.49 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
....+|||||+|.||++||..+++.| .+|+|+|+.+..||
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G--~~VivlEk~~~~gG 48 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARG--LDTLVVEKSAHFGG 48 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCC--CcEEEEEcCCCCCc
Confidence 35689999999999999999999999 99999999987665
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00081 Score=70.70 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|||||+|.||++||..+++.| .+|+|||+...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAG--LSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 4679999999999999999999998 99999999753
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0008 Score=68.93 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|||||||..|+++|..|++.++..+|+|+|+.+.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 357899999999999999999999865679999999864
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=57.30 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=63.6
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCC-CcccCCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNG-LPFDNHK 358 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~-~~~~~~~ 358 (415)
..+++++....+.+++ . +++.+.++.+....... ++.- ....+...+.++.||+|||..++.... ..+....
T Consensus 185 ~~gVkI~~~t~V~DLI--~-~~grVaGVVvnw~~v~~--~~~~--~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~ 257 (357)
T PLN02661 185 RPNVKLFNAVAAEDLI--V-KGDRVGGVVTNWALVAQ--NHDT--QSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI 257 (357)
T ss_pred cCCCEEEeCeEeeeEE--e-cCCEEEEEEeecchhhh--ccCC--CCccceeEEECCEEEEcCCCCCcchhhhhhccccc
Confidence 4579999988888887 4 46677777642110000 0000 000122479999999999966522100 0011111
Q ss_pred Ccc----------ccCCCceeeccCCCCCcccCCeeeeecccc----CC--ccchhhhhhhHHHHHhhccc
Q 014990 359 GIV----------PNIRGRVLKNISGDSSQVENGLYVCGWLKR----GP--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 359 g~~----------~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~----~~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+. .+..-...|++ ..--+||+|+.|-... .| .-++..=+..|+.||+.|.+
T Consensus 258 g~~~~~pg~~~~~~~~~e~~~v~~---t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 258 GMIDSVPGMKALDMNAAEDAIVRL---TREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred CCccCCCCccccchhhHHHHHHhc---cCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 111 01111112222 2345899999996652 12 12343446678888887654
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0009 Score=69.87 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|||||+|.||+++|..+++.| .+|+|||+.+..||
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G--~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSG--LEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 4679999999999999999999999 99999999876555
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00085 Score=70.39 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=33.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..+|||||+|.||++||..+++.+++.+|+|+||....+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~ 42 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMR 42 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 468999999999999999999886558999999986543
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00098 Score=67.74 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=29.3
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCC-ceEEEEcCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPT 55 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~-~~v~lie~~~~ 55 (415)
+|||||||+||..+|..|++.++. .+|+|||+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 699999999999999999999966 89999998764
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0078 Score=53.91 Aligned_cols=202 Identities=20% Similarity=0.210 Sum_probs=102.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc------cCCCCH-----HHHHH
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------QAACTA-----KELRE 226 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~------~~~~~~-----~~l~~ 226 (415)
....|+|||+|++|+-+|..|++ ..-+|.++.|+-.+ ...+++ ++..+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk---------------------~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~ 87 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK---------------------AGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADE 87 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh---------------------CCceEEEEEeecccCCcccccccccceeeecchHHH
Confidence 45779999999999999999997 34589999988221 112221 34444
Q ss_pred HHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCC-Cee
Q 014990 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG-HVS 305 (415)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~-~v~ 305 (415)
++..-++.-+-.+..+. ..... +... .++.+.. +.|.++....++..++ . .++ .+.
T Consensus 88 iL~e~gI~ye~~e~g~~--v~ds~----e~~s----kl~~~a~----------~aGaki~n~~~veDvi--~-r~~~rVa 144 (262)
T COG1635 88 ILDEFGIRYEEEEDGYY--VADSA----EFAS----KLAARAL----------DAGAKIFNGVSVEDVI--V-RDDPRVA 144 (262)
T ss_pred HHHHhCCcceecCCceE--EecHH----HHHH----HHHHHHH----------hcCceeeecceEEEEE--E-ecCCceE
Confidence 44432322222111110 00000 1111 1222211 5567777777777766 3 344 677
Q ss_pred eEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCC----CCc-c-cCCCC--ccccCCC-ceeeccCCCC
Q 014990 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN----GLP-F-DNHKG--IVPNIRG-RVLKNISGDS 376 (415)
Q Consensus 306 ~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~----~~~-~-~~~~g--~~~~~~G-~i~v~~~~~~ 376 (415)
++...-..... .+. .-.-.+++++.|+=+||...+-.. +++ + .+-.| -...+.+ ...+++ .
T Consensus 145 GvVvNWt~V~~--~~l-----hvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~---T 214 (262)
T COG1635 145 GVVVNWTPVQM--AGL-----HVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVEN---T 214 (262)
T ss_pred EEEEecchhhh--ccc-----ccCcceeeEEEEEeCCCCchHHHHHHHHhccccccccCCCcchhhhHHHHHHHhc---c
Confidence 77653211000 000 011236889999999997763210 111 0 00000 0111112 233333 3
Q ss_pred CcccCCeeeeecccc----CC--ccchhhhhhhHHHHHhhccc
Q 014990 377 SQVENGLYVCGWLKR----GP--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 377 ~t~~p~vfaiGD~~~----~~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
..-+||+|++|-... .| .-++..=+..|+.+|+.|..
T Consensus 215 ~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 215 GEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 457999999996542 11 12343345678888877654
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00098 Score=67.50 Aligned_cols=38 Identities=39% Similarity=0.478 Sum_probs=33.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
+|||||+|.||++||..+++.| ..+|+|+|+.+..||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G-~~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAG-AANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CccEEEEecCCCCCCc
Confidence 6999999999999999999986 2699999999876543
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00089 Score=70.16 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..+|+|||+|.||++||..+++.+++.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 4689999999999999999998865589999999865443
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00084 Score=70.32 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=31.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+|||||+|.||++||..+++.| .+|+|+||....
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G--~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAG--LNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 6999999999999999999999 999999998653
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.001 Score=74.29 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=39.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....++|+|||||++|+++|..|.+.| .+|+|||+.+.+||.+.
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G--~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQG--FSVTVLEARSRIGGRVY 733 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCC--CcEEEEeeccCCCCcee
Confidence 345789999999999999999999999 99999999998888754
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00097 Score=69.61 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|||||+|.||++||..+++.+++.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 35799999999999999999998754489999999865
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=69.97 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=35.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
+.++|||||||..|.++|..|+++| .+|+|||+.+..+|.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rG--l~V~LvE~~d~a~Gt 109 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRG--LRVGLVEREDFSSGT 109 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccCCCc
Confidence 4589999999999999999999999 999999998654443
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0009 Score=70.79 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=33.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|||||+|.||++||..+++.| .+|+|+|+.+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G--~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERG--LRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCC--CCEEEEeccCCC
Confidence 3568999999999999999999999 999999998654
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00098 Score=69.72 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
...+|||||+|.||++||..+++.| .+|+|+||.+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G--~~V~lveK~~~~ 40 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAG--FKVAVISKVFPT 40 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCC--CcEEEEEccCCC
Confidence 3579999999999999999999998 999999998543
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0013 Score=68.69 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=36.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
....+|+|||+|.+|+++|..+++.+ .+|+|||+.+..||.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~ 46 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGG--AKVLVVEKASTCGGA 46 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcc
Confidence 35789999999999999999999999 999999998776654
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0012 Score=64.37 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..+|+|||||.+|+++|..|.++| .+|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G--~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKG--IDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcC--CeEEEEeeccc
Confidence 568999999999999999999999 99999998643
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0011 Score=69.86 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|||||+|.||++||..+++.| .+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G--~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAG--LKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCC
Confidence 4679999999999999999999998 99999999854
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0019 Score=62.17 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
.+-+++++|||||..||..+.-..|.| .+||++|-.+..++.+. .++...++..++..++.|..++.+
T Consensus 208 ~~vPk~~~viG~G~IGLE~gsV~~rLG--seVT~VEf~~~i~~~mD----------~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 208 KEVPKKLTVIGAGYIGLEMGSVWSRLG--SEVTVVEFLDQIGGVMD----------GEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred hhCcceEEEEcCceeeeehhhHHHhcC--CeEEEEEehhhhccccC----------HHHHHHHHHHHHhcCceeEeccEE
Confidence 346789999999999999999999999 99999998887765532 366777788888889999998876
Q ss_pred ce---------EEEeccc------ccccCEEEEccCCCCCCC
Q 014990 96 GS---------SVSLSEL------RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 96 ~~---------~v~~~~~------~~~~d~lvlAtG~~~~~~ 122 (415)
.. .+++.+. ..+.|.|.+|+|. .|..
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR-rP~t 316 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR-RPFT 316 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC-cccc
Confidence 22 1222221 1268999999997 3443
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0013 Score=68.60 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
...++|||||+| +|++||..+++.| .+|+|+||.+..||.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G--~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCC--CcEEEEecCCCCcCc
Confidence 458899999999 8999999999999 999999999887774
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0057 Score=63.31 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=58.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhc-cCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~ 96 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. . . ..+...++. .+++++.++.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g--~~Vtli~~~~~l~--------~-----~---~~l~~~l~~~~gV~i~~~~~v~ 412 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIV--RHVTVLEFADELK--------A-----D---KVLQDKLKSLPNVDILTSAQTT 412 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC--cEEEEEEeCCcCC--------h-----h---HHHHHHHhcCCCCEEEECCeeE
Confidence 4679999999999999999999998 8999998765431 0 1 122333443 588888776541
Q ss_pred e---------EEEecc------cccccCEEEEccCCCCCCC
Q 014990 97 S---------SVSLSE------LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 97 ~---------~v~~~~------~~~~~d~lvlAtG~~~~~~ 122 (415)
. .+...+ ....+|.|++|+|. .|..
T Consensus 413 ~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~-~Pn~ 452 (515)
T TIGR03140 413 EIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL-VPNT 452 (515)
T ss_pred EEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC-cCCc
Confidence 1 122221 12468999999998 4443
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0039 Score=63.40 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||+.|+-+|..|.+.| .+|+++++.+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G--~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLG--AEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEeecCc
Confidence 4679999999999999999999999 89999987753
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0012 Score=69.30 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=33.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
...+|||||+|.||++||..+++.| .+|+|+||....+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lleK~~~~~ 43 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSG--QSCALLSKVFPTR 43 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCCCC
Confidence 4579999999999999999999998 9999999985533
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.015 Score=56.72 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
...|+|||+|++|+=+|..+.+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~ 24 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAK 24 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhh
Confidence 4679999999999999999886
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0013 Score=67.24 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++|||||||.+|.++|..|++..|+.+|+|+|+.+.++
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 5679999999999999999999997779999999954544
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0061 Score=61.75 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=30.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|++|+-+|..|.+ .+...+.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~--------------------~g~~~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQ--------------------AGVPDFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--------------------cCCCcEEEEEccC
Confidence 56789999999999999999996 5665588888874
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.002 Score=66.49 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=35.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
++|+|||+||+|+.+|..|++.+ .+|++||++...++.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g--~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAG--LKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCC--CeEEEEeccCccCCCc
Confidence 58999999999999999999999 9999999998877543
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0012 Score=69.64 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc--CCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~--g~~~~v~lie~~~~ 55 (415)
..+|||||+|.||++||..+++. | .+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G--~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPD--LKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCC--CeEEEEECCCc
Confidence 56999999999999999999998 7 99999999864
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0013 Score=69.82 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
...+|||||+|.||++||..+++.| .+|+|+|+...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G--~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELG--YNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEecCCCC
Confidence 3569999999999999999999998 999999986543
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0029 Score=56.40 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCceEEEecCeeEEeeccCCcc--CCCCc---c---------------c-------------CCCCccccCCCceeeccC
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVP--VNGLP---F---------------D-------------NHKGIVPNIRGRVLKNIS 373 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~--~~~~~---~---------------~-------------~~~g~~~~~~G~i~v~~~ 373 (415)
+++..++.+|.+|+|||..|.. +++.. + . ...++.++++|++.+|+.
T Consensus 103 ~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~ 182 (201)
T PF07992_consen 103 TGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDEN 182 (201)
T ss_dssp TTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTT
T ss_pred cCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566799999999999988753 22210 0 0 233566788899999997
Q ss_pred CCCCcccCCeeeeeccccC
Q 014990 374 GDSSQVENGLYVCGWLKRG 392 (415)
Q Consensus 374 ~~~~t~~p~vfaiGD~~~~ 392 (415)
++++.|||||+|||+..
T Consensus 183 --~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 183 --LQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp --SBBSSTTEEE-GGGBEE
T ss_pred --ccccccccccccccccc
Confidence 89999999999999854
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0036 Score=69.03 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|+|||+|++|+.+|..|.+ .| .+|+++.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--------------------~G-~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--------------------EG-FPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeeCCC
Confidence 58999999999999999999996 34 48999988753
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0019 Score=64.38 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+|+|||+|.|||++|..|.+. .+|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC---CcEEEEeCCCCC
Confidence 799999999999999999987 799999998764
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0013 Score=66.50 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|||||+|.||++||..+. .+ .+|+|+||.+..++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G--~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KD--LKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cC--CCEEEEecCCCCCC
Confidence 3569999999999999999984 57 99999999876444
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0015 Score=67.13 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..+|||||+|.||++||..+++.+ . |+|+||.+..+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G--~-V~lleK~~~~~ 37 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQG--R-VIVLSKAPVTE 37 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCC--C-EEEEEccCCCC
Confidence 368999999999999999999988 6 99999986543
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0044 Score=62.48 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||||.||..||...+|.| .++.|+--+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG--~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMG--AKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccC--CeEEEEEcC
Confidence 4589999999999999999999999 888887554
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0091 Score=57.90 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=26.8
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|||+|.+|+-+|..|++ .| -+|+++.|++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~--------------------~G-~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALAR--------------------AG-IDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHH--------------------TT-CEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------cc-cccccchhcccc
Confidence 69999999999999999997 44 479999998543
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0015 Score=68.17 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+|.||++||..+. .+ .+|+|+||.+..++
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G--~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SH--LRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cC--CCEEEEEccCCCCC
Confidence 5679999999999999999996 47 89999999876554
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0013 Score=62.66 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+|+||||+|+||..+|.+|++.+ ..+|+|+|+++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~-~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG-NKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST-TS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCC-CCcEEEEEccccC
Confidence 58999999999999999999875 4699999988653
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0017 Score=67.04 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..+|||||+|.||++||..+++ + .+|+|+||.+..++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g--~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-E--YNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-C--CCEEEEeccCCCCC
Confidence 5799999999999999999976 7 89999999876444
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.01 Score=60.53 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...++|+|||||+.|+-+|..|.+.| .+|+++.+.+
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~G--a~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLG--AEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcC--CEEEEEeecC
Confidence 45689999999999999999999999 8899998765
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0024 Score=60.20 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..+++|||+|.+|+-+|..|++.| .+|.|||+.+..||-..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNaY 41 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCccc
Confidence 368999999999999999999989 99999999999998654
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0019 Score=67.76 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~-~~~v~lie~~~~~gg 58 (415)
..+|||||+|.||++||..+++.|+ ..+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 4689999999999999999999863 269999999865443
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0048 Score=60.28 Aligned_cols=40 Identities=35% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
....++|+|||||.++...+..|.+.++..+|+++-|...
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 4578899999999999999999999987789999998753
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0027 Score=62.06 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------C----CceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH--------Q----EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE 85 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g--------~----~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (415)
+..++|||||||.|+.+|..|+..- | +.+|+|+|..+..- +.+ .+.+.++-.+++.+.
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL--------~mF--dkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL--------NMF--DKRLVEYAENQFVRD 286 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH--------HHH--HHHHHHHHHHHhhhc
Confidence 3457899999999999999997432 1 36899999766421 221 234566777788888
Q ss_pred CeEEEeceEec----eEEEec--cc---ccccCEEEEccCCCCCCC
Q 014990 86 RCSFFGNVTLG----SSVSLS--EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 86 ~~~~~~~~~v~----~~v~~~--~~---~~~~d~lvlAtG~~~~~~ 122 (415)
++.+..++.|. +++..+ ++ .+.|--||-|||. .+++
T Consensus 287 ~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~-~~rp 331 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGN-GPRP 331 (491)
T ss_pred cceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCC-CCch
Confidence 99998887662 223222 22 2479999999998 3444
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0024 Score=67.00 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=36.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..++|+|||+|.+|+++|..+++.+ .+|+|+|+.+..||..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAG--LKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcc
Confidence 4679999999999999999999999 9999999988776654
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.002 Score=68.43 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
...+|||||+|.||++||..+++.| .+|+|+|+.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G--~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRG--LDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcC--CCEEEEeCCCCC
Confidence 3568999999999999999999998 999999997653
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0022 Score=72.64 Aligned_cols=40 Identities=35% Similarity=0.370 Sum_probs=36.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
...+|||||+|.||++||..+++.| .+|+|+||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~G--a~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCG--AQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEccCCCCCc
Confidence 4679999999999999999999999 999999999876654
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0023 Score=66.61 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|||||+|.||++||..+ +.+ .+|+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G--~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERG--KNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcC--CCEEEEEccCC
Confidence 356999999999999999999 888 99999999864
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=60.33 Aligned_cols=75 Identities=20% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|+|+|.+|+++|..|++.| ++|+++|+.... .. ....+.+...++++.......
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~----------------~~-~~~~~~l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEED----------------QL-KEALEELGELGIELVLGEYPE- 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchH----------------HH-HHHHHHHHhcCCEEEeCCcch-
Confidence 4688999999999999999999999 999999876520 11 111122344455554433321
Q ss_pred EEEecccccccCEEEEccCC
Q 014990 98 SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~ 117 (415)
.....+|.||+++|.
T Consensus 64 -----~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGV 78 (450)
T ss_pred -----hHhhcCCEEEECCCC
Confidence 122368999999997
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=58.06 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~ 54 (415)
.++|+|||+|+.|+.+|..|.+.+ .+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g--~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLG--AEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeecc
Confidence 579999999999999999999888 76 99998764
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0021 Score=67.63 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=30.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|||||+|.||++||..+++.| .+|+|+||.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G--~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG--YHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC--CCEEEEEecCC
Confidence 699999999999999999998 99999999873
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=60.37 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .....+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~-------------------~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLK-------------------AHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHh-------------------hCCCCeEEEEecCCC
Confidence 57899999999999999999974 112358999998863
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0039 Score=58.99 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.+|+|||||.||++|+..|.+.| .+++||.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~G--k~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAG--KRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcC--CcEEEEeCCh
Confidence 468999999999999999999999 9999998873
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0029 Score=66.58 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=29.7
Q ss_pred eEEEECCCHHHHHHHHHHH----HcCCCceEEEEcCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTL----KAHQEAQVDIIDRLPT 55 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~----~~g~~~~v~lie~~~~ 55 (415)
+|||||+|.||++||..++ +.| .+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G--~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKG--LKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCC--CeEEEEEccCC
Confidence 6999999999999999998 567 89999999754
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.018 Score=57.63 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|.+|+-+|..|.+ .| .+|+++.|++.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKD--------------------SG-LRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhc--------------------CC-CEEEEEecCCc
Confidence 35689999999999999999986 45 48999998754
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.031 Score=55.14 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..++|+|||+|.+|+-+|..|.+ .|. +|+++.|+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR--------------------AGI-AVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCC
Confidence 45789999999999999999986 344 788998874
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=65.10 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|+|||+|++|+.+|..|.+ .| .+|+++.+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--------------------~G-~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--------------------AG-HPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecccc
Confidence 68999999999999999999996 34 48999988754
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0041 Score=64.59 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=35.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
...++|||||||.||+.||..++..+ .+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g--~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcC--CcEEEEEccccCC
Confidence 46789999999999999999999999 9999999986533
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.004 Score=64.75 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+|.||++||..+++. .+|+|+||....+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCCCCC
Confidence 457999999999999999999873 79999999876554
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0046 Score=64.90 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+|.||++||..+++.+ +|+|+||.+..++
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G---~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG---TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC---CEEEEECCCCCCC
Confidence 4579999999999999999999875 6999999876544
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.019 Score=59.50 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhh-ccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ-HERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~ 96 (415)
+.++|+|||||+.|+.+|..|+..+ .+|+++++.+.+. +. . .+.+.+. ..|++++.++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~--~~Vtlv~~~~~l~--------~~-----~---~l~~~l~~~~gI~i~~~~~v~ 411 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIV--KHVTVLEFAPELK--------AD-----Q---VLQDKLRSLPNVTIITNAQTT 411 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEECcccc--------cc-----H---HHHHHHhcCCCcEEEECcEEE
Confidence 4679999999999999999999998 9999998776431 11 1 1222333 3588888876542
Q ss_pred e---------EEEecc---c---ccccCEEEEccCC
Q 014990 97 S---------SVSLSE---L---RQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~---------~v~~~~---~---~~~~d~lvlAtG~ 117 (415)
. .+...+ . ...+|.|++|+|.
T Consensus 412 ~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 412 EVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 1 122211 1 2469999999998
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0058 Score=62.37 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+..++|+|||||..|+.+|..++.+| ++|+|+|+++...|.+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RG--l~v~LvE~~D~AsGTS 51 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRG--LKVALVEKGDLASGTS 51 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCC--CeEEEEecCcccCccc
Confidence 37899999999999999999999999 9999999998755543
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0096 Score=56.75 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=67.5
Q ss_pred cccCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEe
Q 014990 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFG 91 (415)
Q Consensus 12 ~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (415)
|....+++++++|||||+.++..|.-++-.| .++-|+=|++.+- .. ..+.+.+...+.++..++++..
T Consensus 182 ff~Lee~Pkr~vvvGaGYIavE~Agi~~gLg--sethlfiR~~kvL--------R~--FD~~i~~~v~~~~~~~ginvh~ 249 (478)
T KOG0405|consen 182 FFDLEEQPKRVVVVGAGYIAVEFAGIFAGLG--SETHLFIRQEKVL--------RG--FDEMISDLVTEHLEGRGINVHK 249 (478)
T ss_pred ccchhhcCceEEEEccceEEEEhhhHHhhcC--CeeEEEEecchhh--------cc--hhHHHHHHHHHHhhhcceeecc
Confidence 3445578999999999999999999999999 8888877666531 11 1224556667778888899888
Q ss_pred ceEeceEEEecc---------ccc-ccCEEEEccCC
Q 014990 92 NVTLGSSVSLSE---------LRQ-LYHVVVLAYGA 117 (415)
Q Consensus 92 ~~~v~~~v~~~~---------~~~-~~d~lvlAtG~ 117 (415)
++.+...++..+ ..+ ..|.|+.|+|.
T Consensus 250 ~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR 285 (478)
T KOG0405|consen 250 NSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR 285 (478)
T ss_pred cccceeeeecCCCceEEEEeccccccccEEEEEecC
Confidence 876643332222 222 58999999996
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.023 Score=57.88 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
..++|+|||||+.|+.+|..|.+.+ . +|+++++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G--~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLG--AESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecC
Confidence 5789999999999999999999998 7 899998764
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.054 Score=55.88 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=29.4
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.-.|+|||+|++|+-+|..|.+ .|. +|+++.|.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--------------------~Gi-~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--------------------RGV-SFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence 4579999999999999999996 455 7999988743
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.022 Score=58.25 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~ 56 (415)
..++|+|||||+.|+.+|..+.+.+ . +|++++..+.+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~g--a~~Vt~~~~~~~~ 317 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQG--AKSVTQRDIMPMP 317 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEccccCCC
Confidence 5689999999999999999999888 5 78888766543
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.014 Score=59.43 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=51.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceEEE
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVS 100 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~ 100 (415)
+|+|||.|++|+++|..|++.| ++|+++|+..... .......++..++.+..+...... .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~-----------------~~~~~~~l~~~gi~~~~g~~~~~~-~ 61 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPE-----------------LLERQQELEQEGITVKLGKPLELE-S 61 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchh-----------------hHHHHHHHHHcCCEEEECCccchh-h
Confidence 5899999999999999999999 9999999776531 111122234457777654432100 0
Q ss_pred ecccccccCEEEEccCC
Q 014990 101 LSELRQLYHVVVLAYGA 117 (415)
Q Consensus 101 ~~~~~~~~d~lvlAtG~ 117 (415)
.......+|.||+.+|.
T Consensus 62 ~~~~~~~~d~vv~s~gi 78 (459)
T PRK02705 62 FQPWLDQPDLVVVSPGI 78 (459)
T ss_pred hhHHhhcCCEEEECCCC
Confidence 00122368999999988
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.006 Score=63.83 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~v~lie~~~~ 55 (415)
..+++||||+|+||+.+|.+|++ .+ .+|+|+|+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g--~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPD--VSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCC--CeEEEecCCCc
Confidence 45899999999999999999999 56 99999999853
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0022 Score=57.38 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=23.4
Q ss_pred EEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 163 ~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+|||+|++|+-+|..|.+ .+.+++.++.|+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~--------------------~g~~~v~v~e~~~~ 32 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--------------------RGIDPVVVLERNDR 32 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--------------------TT---EEEEESSSS
T ss_pred CEECcCHHHHHHHHHHHh--------------------CCCCcEEEEeCCCC
Confidence 699999999999999986 56656999998843
|
... |
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0039 Score=61.25 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=41.0
Q ss_pred hccccc-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 9 SRSFTA-LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 9 ~~~~~~-~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
-|.|+. +.+..++++|||+|.-||.||.+|+|.+ .+|+++|++...||-
T Consensus 3 rR~fS~~~~~~~ydavvig~GhnGL~aaayl~r~g--~~V~vlerrhv~gGa 52 (561)
T KOG4254|consen 3 RRSFSSLSAKPEYDAVVIGGGHNGLTAAAYLARYG--QSVAVLERRHVIGGA 52 (561)
T ss_pred cccccccCCCcccceEEecCCccchhHHHHHHhcC--cceEEEEEeeecCcc
Confidence 345533 3367899999999999999999999999 999999999766664
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0057 Score=64.29 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..+|||||+|.||++||..+++ . .+|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~-~--~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP-R--ARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh-C--CCEEEEeCCCC
Confidence 5689999999999999999986 3 79999999854
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.013 Score=59.77 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=30.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .+ .+|+++.+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--------------------~G-~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--------------------AG-VQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCC
Confidence 67899999999999999999986 34 36999887753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.029 Score=58.48 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|++|+-+|..|.+ .|. +|+++.|.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~--------------------~G~-~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR--------------------RGV-DSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCC
Confidence 35689999999999999999996 454 789998874
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0074 Score=58.73 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=36.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP 66 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~ 66 (415)
|+|.|||.|+.|+..|..|++.| ++|+.+|..+.-=..+..+..|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~g~~P 45 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNKGISP 45 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhCCCCC
Confidence 68999999999999999999999 9999999875433333444434
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.027 Score=61.14 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~ 55 (415)
..++|+|||||+.|+-+|..+.+.| .+ |+++++.+.
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtlv~r~~~ 605 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLG--AERVTIVYRRSE 605 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--CCeEEEeeecCc
Confidence 5689999999999999999999998 76 999987653
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.066 Score=52.50 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.|+|||+|++|+-+|..|++ . -+|+++.|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~---------------------~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG---------------------K-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc---------------------c-CCEEEEECCC
Confidence 59999999999999999986 3 5899999875
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0095 Score=61.69 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=26.7
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
.|+|+|||+|++|+-.+..|.+ .|. +++++.+++.+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e--------------------~g~-~~~~fE~~~~i 36 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLE--------------------EGL-EVTCFEKSDDI 36 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHH--------------------TT--EEEEEESSSSS
T ss_pred CCEEEEECccHHHHHHHHHHHH--------------------CCC-CCeEEecCCCC
Confidence 3799999999999999999986 353 78999998544
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.016 Score=61.59 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .|. +|+++.+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--------------------~G~-~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--------------------AGV-QVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--------------------cCC-cEEEEeCCCC
Confidence 58999999999999999999986 454 7999988764
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0059 Score=67.42 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|||||+|.||++||..+++.| .+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G--~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHG--ANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCC--CeEEEEecccc
Confidence 4578999999999999999999998 99999999864
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.062 Score=46.14 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.9
Q ss_pred EEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 163 ~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+|||+|++|+-++..|.+.. ......+|++|.+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~----------------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA----------------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc----------------CCCCCCEEEEEcCCCc
Confidence 59999999999999998721 0123468999988643
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.022 Score=57.85 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.. +.+ .+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~-------------------~~g-~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLK-------------------HER-VKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-------------------hcC-CeEEEEecCCC
Confidence 57899999999999999998763 123 47999999864
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0064 Score=53.95 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=44.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceEE
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v 99 (415)
|+|.|||.|+.|+.+|..|++.| ++|+.+|.++..=..+..+..|.. ++ ...+.+.+..+..++.+-.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~-E~-~l~~ll~~~~~~~~l~~t~-------- 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIY-EP-GLDELLKENVSAGRLRATT-------- 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS--CT-THHHHHHHHHHTTSEEEES--------
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhcccccc-cc-chhhhhccccccccchhhh--------
Confidence 68999999999999999999999 999999988653223333332321 21 1222333333333332211
Q ss_pred EecccccccCEEEEccCC
Q 014990 100 SLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 100 ~~~~~~~~~d~lvlAtG~ 117 (415)
........+|.+++|.+.
T Consensus 69 ~~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPT 86 (185)
T ss_dssp EHHHHHHH-SEEEE----
T ss_pred hhhhhhhccceEEEecCC
Confidence 111122478999999997
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.056 Score=54.54 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..++|+|||+|++|+-.|..|.+ .| .+++++.|++.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--------------------~g-~~v~vfEr~~~i 41 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--------------------EG-HEVVVFERTDDI 41 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--------------------CC-CCceEEEecCCc
Confidence 57899999999999999999997 33 588888888533
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.069 Score=53.03 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=30.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||||.+|+.+|..|.+ .| -+|+++.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--------------------AG-WDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEecCCC
Confidence 46889999999999999999996 45 47999998753
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.05 Score=54.36 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=75.1
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCC------CCHHHHHHHHcCCC-
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA------CTAKELREILGIKN- 232 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~------~~~~~l~~~~~~~~- 232 (415)
-.|+|||+|++|.-+|..|++ .| -+|.++.++.....+ .....+.++..++.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~--------------------~G-~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~ 62 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAK--------------------AG-LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE 62 (396)
T ss_pred eeEEEECCchHHHHHHHHHHH--------------------cC-CeEEEEecCCCCCCCccccceechhhHHHhCCCcch
Confidence 469999999999999999996 45 589999997544332 23344555544443
Q ss_pred -eeEEEcccccCCCCCcHHhhhc------hHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCee
Q 014990 233 -LYVHIREDDLIKSPTDEEEMKN------SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVS 305 (415)
Q Consensus 233 -~~~~~~~~~~~~~p~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~ 305 (415)
+...+....+... .....+.. ...|.++.+.|...+. +.|..+...+.+..+. . +++.+.
T Consensus 63 ~i~~~v~~~~~~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~---------~aGae~~~~~~~~~~~--~-~~~~~~ 129 (396)
T COG0644 63 EIERKVTGARIYFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAE---------EAGAELYPGTRVTGVI--R-EDDGVV 129 (396)
T ss_pred hhheeeeeeEEEec-CCceEEecCCCceEEEEhHHhhHHHHHHHH---------HcCCEEEeceEEEEEE--E-eCCcEE
Confidence 2333333333222 11111110 1113333343443332 5688888888888876 4 233222
Q ss_pred eEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 306 ~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
.... .+. .++.+++||.|.|..
T Consensus 130 ~~~~-----------------~~~-~e~~a~~vI~AdG~~ 151 (396)
T COG0644 130 VGVR-----------------AGD-DEVRAKVVIDADGVN 151 (396)
T ss_pred EEEE-----------------cCC-EEEEcCEEEECCCcc
Confidence 1111 122 478888888888844
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.047 Score=53.88 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHhc
Q 014990 161 TAVILGQGNVALDVARILLR 180 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~ 180 (415)
.|+|||||..|||+|..+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr 20 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR 20 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 48999999999999999997
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.09 Score=49.59 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.|+|||+|.+|+-+|..|.+ .+ .+|+++.|+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~--------------------~g-~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD--------------------KG-LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeccCC
Confidence 48999999999999999986 34 47999998853
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0092 Score=57.65 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
....+|+|||||.+|-+.|..|+|.| .+|.+|||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdG--RrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDG--RRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCC--cEEEEEecc
Confidence 45778999999999999999999999 999999987
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0075 Score=62.36 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|||||+|.||++||..++ + .+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~--~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--P--RPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--c--CCEEEEECCCC
Confidence 4579999999999999999996 4 69999999876
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.075 Score=53.91 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.-.|+|||+|++|+-+|..|.+ .| .+|.++.+++
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~--------------------~G-l~V~liE~~~ 61 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSE--------------------AG-LSVCCIDPSP 61 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEeccCc
Confidence 3479999999999999999986 34 4788888864
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.071 Score=53.83 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=29.2
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
-.|+|||+|++|+-+|..|++ .| .+|.++.|....
T Consensus 6 ~DViIVGaGpAG~~aA~~La~--------------------~G-~~V~llEr~~~~ 40 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR--------------------EG-AQVLVIERGNSA 40 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEEcCCCC
Confidence 579999999999999999986 34 489999887543
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.067 Score=53.29 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=28.5
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|++|+-+|..|.+ .| .+|+++.|++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL--------------------AG-IDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh--------------------cC-CCEEEEEcCCc
Confidence 569999999999999999986 34 47889988853
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.023 Score=58.34 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .+ .+|+++.+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--------------------~g-~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--------------------AG-HTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEecCCC
Confidence 56899999999999999999986 34 47999988753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.055 Score=53.64 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=28.9
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
-+|+|||+|++|+-+|..|.+ .| .+|+++.|+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ--------------------SG-LRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEecCCC
Confidence 469999999999999999986 45 48999998754
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.046 Score=54.60 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
....|+|||||.+|+-+|..|.+ .| .+|+++.+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~--------------------~G-~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR--------------------AG-VDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecCC
Confidence 35679999999999999999986 34 4789998874
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.12 Score=53.10 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=28.4
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..|+|||+|++|+-+|..|.+ .| -+|+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~--------------------~G-~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL--------------------AG-VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCCC
Confidence 469999999999999999986 45 47999988743
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=51.46 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..+|+|||+|++|+-+|..|.+ .|. +|+++.|.+..
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~--------------------~G~-~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGA--------------------RGH-SVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHh--------------------cCC-cEEEEeCCCcc
Confidence 3579999999999999999996 454 78999887544
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.12 Score=53.23 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...|+|||+|++|+-+|..|.+ .| -+|+++.|.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~--------------------~G-~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL--------------------AG-VDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCC
Confidence 4679999999999999999996 45 4789998875
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.044 Score=57.32 Aligned_cols=61 Identities=25% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. .. .... ..+....+++++.++.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g--~~Vtli~~~~~~~--------~~----~~~~---~~~~~~~gV~i~~~~~V 202 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYA--SKVTVIVREPDFT--------CA----KLIA---EKVKNHPKIEVKFNTEL 202 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccC--CEEEEEEeCCccc--------cC----HHHH---HHHHhCCCcEEEeCCEE
Confidence 4689999999999999999999998 9999999876430 11 1111 22234457888877655
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.025 Score=60.34 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .| .+|+++.+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--------------------~G-~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--------------------NG-VAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCCC
Confidence 68999999999999999999986 45 47999988753
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.082 Score=53.41 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=28.9
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
-.|+|||+|++|+-+|..|++ .| .+|.++.|....
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~--------------------~G-~~VlliEr~~~~ 40 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR--------------------AG-LDVLVIERGDSA 40 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEecCCCC
Confidence 479999999999999999986 34 479999887543
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0061 Score=56.63 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=37.1
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcC----CCceEEEEcCCCCCCC
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFG 58 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g----~~~~v~lie~~~~~gg 58 (415)
.+..+.++|+|||||..|.++|++|.+++ ...+|+|||.....|+
T Consensus 5 ~r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 5 SREGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred cccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 34556799999999999999999999887 2479999999865444
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.072 Score=55.16 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.7
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++|+|||+|++|+-++..|.+ ....-+|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~-------------------~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQ-------------------QQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHh-------------------cCCCCcEEEEecCC
Confidence 579999999999999999985 11223789998864
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.015 Score=46.25 Aligned_cols=35 Identities=37% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.++|+|||||..|..-+..|.+.+ .+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCch
Confidence 6789999999999999999999999 9999998653
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.15 Score=50.55 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=28.8
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
++|+|||+|.+|+-+|..|.+ .| .+|+++.+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--------------------~G-~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--------------------HG-YSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEcCCCCC
Confidence 479999999999999999986 34 369999887543
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.14 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|++|+-+|..|.+ .|. +|+++.+.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~--------------------~G~-~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ--------------------QGV-PVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEeCCC
Confidence 34689999999999999999986 454 788888875
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.19 Score=52.42 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=29.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|++|+-+|..|.+ .| .+|+++.|...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~--------------------~G-~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ--------------------YG-VRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCCC
Confidence 35679999999999999999986 34 47889988753
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.026 Score=48.59 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+|+|||||..|.++|..|++.+ .+|+|+.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccH
Confidence 6899999999999999999999 9999998754
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.016 Score=58.47 Aligned_cols=46 Identities=13% Similarity=0.357 Sum_probs=0.0
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeec
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
+.|+++++++.+..+. . +++++.+|.+.+. .| ..++.++++|=|||
T Consensus 102 e~gv~v~~~t~v~~v~--~-~~~~i~~V~~~~~--------------~g-~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 102 EAGVEVLLGTRVVDVI--R-DGGRITGVIVETK--------------SG-RKEIRAKVFIDATG 147 (428)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccccccccccccccc--c-ccccccccccccc--------------cc-cccccccccccccc
Confidence 6789999999999987 5 4667888876541 23 45899999999999
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.23 Score=49.56 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.6
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
++|+|||||.+|+-+|..|.+ .|. +|+++.|.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--------------------~G~-~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--------------------RGW-AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCc
Confidence 789999999999999999986 343 7888888753
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.02 Score=54.05 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.5
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
.|||||+|.|||+++..+...+ -.|+|+|+....||-
T Consensus 11 pvvVIGgGLAGLsasn~iin~g--g~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKG--GIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcC--CeEEEEeccCCcCCc
Confidence 5999999999999999999998 779999999777763
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.072 Score=53.08 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC-cceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~r~~~ 214 (415)
.|+|||+|++|+-+|..|++ .| .-+|+++.|++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~--------------------~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ--------------------AAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCCCEEEEEeCCCc
Confidence 58999999999999999986 33 358999998753
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.2 Score=49.77 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=28.6
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
..+|+|||+|++|+-+|..|++ .| -+|+++.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--------------------~G-~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--------------------AG-LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEccC
Confidence 3579999999999999999996 45 589999887
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.12 Score=51.40 Aligned_cols=35 Identities=37% Similarity=0.408 Sum_probs=29.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|++|+-+|..|.+ .|. +|+++.|.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~--------------------~G~-~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD--------------------AGL-SVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEeCCC
Confidence 45679999999999999999986 454 699999874
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.16 Score=50.50 Aligned_cols=100 Identities=22% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---CCceEEEEcCC----------------------------------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRL---------------------------------------- 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g---~~~~v~lie~~---------------------------------------- 53 (415)
...++|+|||+|++|+.+|+.++... +...|.++|..
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~~~c~~~~~~~I~~G~GgaG~fs~g~ 95 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPKCDPCPIVIGFGGAGLFSDGI 95 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccccccchhhcCCCCCceeEecccccccccccc
Q ss_pred ----CCCCC-------------------------------------------------------ccccCCCCCCcchHHH
Q 014990 54 ----PTPFG-------------------------------------------------------LVRSGVAPDHPETKIV 74 (415)
Q Consensus 54 ----~~~gg-------------------------------------------------------~~~~~~~~~~~~~~~~ 74 (415)
+..|+ +..+.-+-+-.....+
T Consensus 96 lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~eil~~~~rHiGTD~l~~v 175 (486)
T COG2509 96 LNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGEEILPIYQRHIGTDILPKV 175 (486)
T ss_pred eecccccccchhhhhCChHHHHHHHhccchhheecCCCcCcccCCchhhhhHHHHHHhCCCceeeeccccccCccchHHH
Q ss_pred HHHHHHHhhccCeEEEeceEe---------ceEEEeccc-ccccCEEEEccC
Q 014990 75 INQFSRVVQHERCSFFGNVTL---------GSSVSLSEL-RQLYHVVVLAYG 116 (415)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v---------~~~v~~~~~-~~~~d~lvlAtG 116 (415)
...+.+.++..+++++.++.| -..+....+ ...+|+||+|+|
T Consensus 176 vkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 176 VKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.14 Score=51.17 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=28.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
..+|+|||+|++|+-+|..|.+ .|. +|+++.+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~--------------------~G~-~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE--------------------SDL-RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh--------------------CCC-EEEEEcCC
Confidence 4579999999999999999986 454 78999885
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.079 Score=54.79 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=29.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~ 53 (415)
.+..-+|||||||-+|.++|++|++.| .+ .++.|+.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g--~k~avlle~~ 72 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRG--MKGAVLLERS 72 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHcc--ccceEEEeee
Confidence 345678999999999999999999999 87 4444544
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.14 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.7
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
.-.|+|||+|+.|+-+|..+.+
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r 24 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAAR 24 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHH
Confidence 3579999999999999999986
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.2 Score=49.82 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=28.1
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||||.+|+-+|..|.+ .| -+|+++.|.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR--------------------YG-HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH--------------------CC-CceEEEeCCCC
Confidence 369999999999999999986 35 36889988754
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.052 Score=60.56 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|+.|+.+|..|.+ .| .+|+++.+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--------------------~G-~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--------------------YG-VDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecCCC
Confidence 57899999999999999999996 34 48999988753
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.023 Score=56.41 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...++|||||||.||..||...+|.| .+.+|+-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~G--a~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLG--ARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcC--CceEEeecc
Confidence 46789999999999999999999999 888888665
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.058 Score=59.63 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||||+.|+.+|..|++ .| .+|+++.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--------------------~G-~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--------------------AG-HPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecccc
Confidence 56899999999999999999996 34 48999988754
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.22 Score=49.04 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|||||.+|+-+|..|++ .| -+|+++.|++..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--------------------~g-~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--------------------QG-HEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecCCcc
Confidence 69999999999999999986 44 478999888543
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.033 Score=50.27 Aligned_cols=34 Identities=35% Similarity=0.370 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+.++|+|||||..|...+..|.+.| .+|+|+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 5679999999999999999999999 999999854
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.028 Score=56.53 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=38.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~~gg~~~ 61 (415)
++++=|||+|.|+|++|.+|.|.+ |+-+|+|+|+.+.+||.+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 467889999999999999999998 7889999999998887653
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.08 Score=57.71 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..+++|+|||+|++|+-+|.+|.+ ....|+++.|++..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk---------------------~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNK---------------------AGHTVTVYERSDRV 1820 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhh---------------------cCcEEEEEEecCCc
Confidence 479999999999999999999996 34689999999654
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.025 Score=59.37 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++++|||||.||..+|.+|.+ + .+|+|+|+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~--~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-N--FSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-C--CcEEEEecCCC
Confidence 347999999999999999999999 5 89999999864
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.11 Score=51.78 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
...+|+|||+|.+|+-+|..|.+ .|. +|+++.|++..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~--------------------~g~-~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR--------------------QGI-KVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEeeCccc
Confidence 45789999999999999999986 454 79999988643
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.15 Score=50.64 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=28.9
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
-+|+|||+|++|+-+|..|.+ .| -+|+++.|...
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG--------------------SG-LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh--------------------CC-CcEEEEeCCCc
Confidence 469999999999999999986 45 47999998754
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.04 Score=47.48 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
-+.++|+|||||..|..-+..|.+.+ .+|+||++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp 44 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSP 44 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcC
Confidence 36889999999999999999999999 99999963
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.3 Score=51.18 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=27.4
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
-.|+|||||..|+++|..+++ .| .+|.++.++
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR--------------------~G-~kV~LiE~~ 36 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAAR--------------------MG-AKTLLLTHN 36 (618)
T ss_pred ceEEEECchHHHHHHHHHHHH--------------------cC-CcEEEEecc
Confidence 469999999999999999996 34 578888876
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.38 Score=48.28 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.7
Q ss_pred CeEEEEcCChhHHHHHHHHhc
Q 014990 160 DTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~ 180 (415)
++|+|||+|++|+.+|.+|.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~ 22 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLK 22 (474)
T ss_pred ceEEEECCchHHHHHHHHHHh
Confidence 579999999999999999997
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.29 Score=50.70 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|.+|+-+|..|.+ .| .+|+++.|..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~--------------------~G-~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK--------------------DG-RRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEECcC
Confidence 45589999999999999999986 34 5899998874
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.32 Score=48.37 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=26.7
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
.|+|||+|++|+-+|..|++ .| .+|.++.++
T Consensus 2 DVvIVGaGpAG~~aA~~La~--------------------~G-~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR--------------------AG-IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEECC
Confidence 59999999999999999996 34 478898887
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.018 Score=58.21 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=28.4
Q ss_pred EECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 24 IIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|||+|.||++||..+++.| .+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~G--a~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAG--ASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence 7999999999999999999 99999999874
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.025 Score=58.82 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++||||+|.||.-+|.+|++.+ ..+|+|+|+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~-~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV-SNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC-CCeEEEEecCCC
Confidence 6899999999999999999875 469999999864
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.23 Score=51.38 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=19.3
Q ss_pred CeEEEEcCChhHHHHHHHHhc
Q 014990 160 DTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~ 180 (415)
-.|+|||+|++|+-+|..|.+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak 129 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK 129 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 479999999999999999986
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.17 Score=53.91 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
...++|+|||||+.|+.+|..+.+.+ . +|+|+.+.+
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~G--a~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLG--AESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecC
Confidence 35789999999999999999999998 5 699998765
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.51 Score=48.16 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=35.0
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
+.++.+++++.+++++ . +++++.++.... .+++...+.++.||+|+|-
T Consensus 143 ~~gv~i~~~t~v~~l~--~-~~g~v~gv~~~~--------------~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 143 RLGVEIRYDAPVTALE--L-DDGRFVGARAGS--------------AAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HCCCEEEcCCEEEEEE--e-cCCeEEEEEEEc--------------cCCceEEEECCEEEECCCC
Confidence 5689999999999887 4 456666665532 1344557899999999994
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.1 Score=53.54 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+++|+|||+|.+|+++|..|.+ .| .+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--------------------~G-~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--------------------LG-ARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CC-CEEEEEeCCc
Confidence 57899999999999999988885 45 4788887654
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.16 Score=50.75 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|||+|+.|+-+|..|++ .| .+|.++.|....
T Consensus 2 ~VvIVGaGPAG~~aA~~la~--------------------~G-~~V~llE~~~~~ 35 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS--------------------AG-IQTFLLERKPDN 35 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh--------------------CC-CcEEEEecCCCC
Confidence 69999999999999999996 45 479999887543
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.55 Score=48.54 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=36.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeec-cCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG-YKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG-~~p 346 (415)
+.++++++++.+++++ . +++++.++.+... +++..++.++.||+|+| +.+
T Consensus 202 ~~gv~i~~~t~v~~l~--~-~~g~V~Gv~~~~~--------------~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 202 ERKIPLFVNADVTKIT--E-KDGKVTGVKVKIN--------------GKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HcCCeEEeCCeeEEEE--e-cCCEEEEEEEEeC--------------CCeEEEEecCeEEEeCCCccc
Confidence 5689999999999987 4 4567777765431 33445799999999998 544
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.17 Score=50.09 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.2
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.|+|||+|++|+-+|..|.+ .+ .+|.++.+++.
T Consensus 1 DviIiGaG~AGl~~A~~la~--------------------~g-~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--------------------PG-LRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--------------------CC-CeEEEEccCCC
Confidence 48999999999999999885 33 48999987753
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.14 Score=57.37 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=56.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
..++|+|||+|+.|+.+|..|++.+ .+ |+|+|..+.. ...+.+.+++.+++++.++.+.
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G--~~vV~vv~~~~~~------------------~~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAG--IAVVAIIDARADV------------------SPEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEccCcch------------------hHHHHHHHHHcCCEEEcCCeEE
Confidence 4579999999999999999999998 64 7888866432 1123345667788888776542
Q ss_pred e--------EEEec----c-cccccCEEEEccCC
Q 014990 97 S--------SVSLS----E-LRQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~----~-~~~~~d~lvlAtG~ 117 (415)
. .+... + ....+|.|+++.|.
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 1 12222 1 22468999999998
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.18 Score=50.00 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=27.8
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+|+|||+|++|.-+|..|.+ .| -+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~--------------------~G-~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK--------------------QG-RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh--------------------CC-CcEEEEcCCC
Confidence 469999999999999999986 34 4889998764
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.18 Score=49.73 Aligned_cols=33 Identities=36% Similarity=0.439 Sum_probs=28.3
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.|+|||+|++|+-+|..|.+ .| .+|+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~--------------------~G-~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--------------------SG-LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--------------------CC-CEEEEEeCCCc
Confidence 48999999999999999996 45 48999999854
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.073 Score=44.44 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..+|+|+|+|.-|..+|..|++.| -.+++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcc
Confidence 578999999999999999999999 23899999873
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.041 Score=53.76 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~ 53 (415)
..++|||+||||.|++.|..|.... ...+|.|+|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 4899999999999999999999544 24689999988
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.69 Score=46.77 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=35.9
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.|+++++++.+++++ .++++.+.++.+... .++...+.++.||+|+|-..
T Consensus 142 ~~gv~i~~~~~v~~l~--~~~~g~v~Gv~~~~~--------------~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLI--QDDQGTVVGVVVKGK--------------GKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HcCCEEEeCCEeeEeE--ECCCCcEEEEEEEeC--------------CCeEEEEecceEEEecCCCC
Confidence 5689999999999987 423466766665431 33444689999999999443
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.039 Score=57.42 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+++||||+|.||-.+|..|.+.+ .+|+|+|.+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g--~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAG--LSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCC--CeEEEEeCCC
Confidence 46789999999999999999999666 9999999983
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.064 Score=48.26 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
+.++|+|||||-.|...+..|.+.| .+|+|+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcC
Confidence 6789999999999999999999999 99999974
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.066 Score=44.58 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|++||.| .|.+.|..|.+.| ++|+.+|-++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G--~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESG--FDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCC--CEEEEEECCHH
Confidence 45789999999 8999999999999 99999998754
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.29 Score=50.28 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...|+|||+|++|+-+|..|.+ .|. +|.++.+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar--------------------~Gi-~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL--------------------CGL-NTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEeCCC
Confidence 3579999999999999999986 454 688888874
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.19 Score=50.16 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=27.9
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..|+|||+|.+|+-+|..|.+ .| -+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--------------------~G-~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG--------------------SG-LEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc--------------------CC-CEEEEEcCCC
Confidence 369999999999999999986 34 4899998875
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.058 Score=53.83 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=36.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+.++||+||||..|.+++..|.+..|..+|.|+||.+.++
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 5789999999999999999999999999999999987644
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.22 Score=49.93 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCee
Q 014990 259 RRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMV 338 (415)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~v 338 (415)
..+...+.+... +.++++++++.+++++ . +++++.++...+. .+++...+.++.|
T Consensus 141 ~~~~~~l~~~~~---------~~gv~i~~~~~~~~Li--~-e~g~V~Gv~~~~~-------------~~g~~~~i~A~aV 195 (417)
T PF00890_consen 141 KALIEALAKAAE---------EAGVDIRFNTRVTDLI--T-EDGRVTGVVAENP-------------ADGEFVRIKAKAV 195 (417)
T ss_dssp HHHHHHHHHHHH---------HTTEEEEESEEEEEEE--E-ETTEEEEEEEEET-------------TTCEEEEEEESEE
T ss_pred HHHHHHHHHHHh---------hcCeeeeccceeeeEE--E-eCCceeEEEEEEC-------------CCCeEEEEeeeEE
Confidence 344555555543 5679999999999998 5 5778888887642 1566678999999
Q ss_pred EEeeccCCc
Q 014990 339 LKSIGYKSV 347 (415)
Q Consensus 339 i~atG~~p~ 347 (415)
|+|||-...
T Consensus 196 IlAtGG~~~ 204 (417)
T PF00890_consen 196 ILATGGFGG 204 (417)
T ss_dssp EE----BGG
T ss_pred EeccCcccc
Confidence 999996654
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.065 Score=51.02 Aligned_cols=35 Identities=34% Similarity=0.372 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|.|||-+|..|+..| .+|+|+|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG--~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAG--KRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcC--ceEEEEcccc
Confidence 4678999999999999999999999 9999999874
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.34 Score=48.02 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=28.5
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.-.|+|||+|++|+-+|..|.+ .| .+|+++.+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~--------------------~G-~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ--------------------HG-FSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc--------------------CC-CEEEEEcCCC
Confidence 4579999999999999999986 34 4799998864
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.12 Score=54.74 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..+++|+|||+|+.|+.+|..|.+ .+ .+|+++.+...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~--------------------~G-~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT--------------------MG-YEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCCC
Confidence 368899999999999999999986 34 47999887753
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.53 Score=46.95 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCc---ceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~l~~r~~ 213 (415)
....|+|||+|++|+-+|..|.+ .|. .+|+++.+.+
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~--------------------~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLAR--------------------RSATRALSIALIDARE 48 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--------------------CCCcCCceEEEecCCC
Confidence 35689999999999999999986 342 4699998864
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.062 Score=49.23 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
|+++|||+|.-|.+.|..|.+.| ++|++||+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCH
Confidence 57999999999999999999999 9999999554
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.095 Score=50.07 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~ 55 (415)
...+|+|||||-.|.|.|..|.++- -+.+|+++|+.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 5779999999999999999998654 2389999999864
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.38 Score=47.99 Aligned_cols=35 Identities=37% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...|+|||+|++|+-+|..|.+ .| -+|+++.|.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--------------------~G-~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--------------------SG-LRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--------------------CC-CEEEEEeCCCC
Confidence 3579999999999999999986 45 47999998754
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.043 Score=51.80 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=36.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
...+++||||||..|++.|..|.-+.|+.+|.++|+...+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 3578999999999999999999999888999999998654
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.081 Score=46.66 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=28.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+|.|||+|..|...|..+++.| ++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECCh
Confidence 5899999999999999999999 9999999764
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.55 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.5
Q ss_pred CeEEEEcCChhHHHHHHHHhc
Q 014990 160 DTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~ 180 (415)
-.|+|||||.+|+-+|.+|++
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~ 27 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCAL 27 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHH
Confidence 569999999999999999986
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.21 Score=46.87 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| -.+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCE
Confidence 5778999999999999999999998 34899999763
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.21 Score=44.96 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...+|+|||.|-.|..+|..|++.| . +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G--v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG--VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEecCC
Confidence 6788999999999999999999999 5 89999986
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.17 Score=52.99 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 156 ~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+++|+|||+|++|+-+|..|.+ .|. +|+++.+.+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~--------------------~G~-~V~v~e~~~~ 171 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR--------------------MGH-AVTIFEAGPK 171 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCC
Confidence 3478999999999999999999886 465 6999987754
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.74 Score=45.42 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.|+|||+|++|+-+|..|.+ .|.-+|+++.|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--------------------~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--------------------LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCceEEEEeCCCc
Confidence 48999999999999999996 45148999988743
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.23 Score=49.40 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=28.6
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|.+|+-+|..|.+ .| -+|+++.+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--------------------~G-~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--------------------AG-IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--------------------CC-CCEEEEECCCC
Confidence 579999999999999999986 45 37899988763
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.12 Score=43.34 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~ 53 (415)
..++|+|||+|-+|-+++..|...| .+ |+|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g--~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG--AKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT--SSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 6889999999999999999999998 65 9999864
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.061 Score=51.10 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...|-|||||.||..||+.++++| +.|.|+|-.+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~G--v~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRG--VPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcC--CcEEEEEcccc
Confidence 456899999999999999999999 99999998754
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.36 Score=49.40 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=37.6
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV 64 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~ 64 (415)
+.....+++|||+|.+|-..+..+++...-.-|.++|..+..-|.--.|+
T Consensus 112 ~~~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv 161 (588)
T COG1086 112 QKDNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGV 161 (588)
T ss_pred cccCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEece
Confidence 44567899999999999999999998875345666788876555544443
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.27 Score=47.98 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| . +++|+|+..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG--vg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG--IGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCc
Confidence 5778999999999999999999999 6 899999874
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.75 Score=46.76 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..-.|+|||+|+.|+-+|..|++ .| .+|.++.|+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~--------------------~G-~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAK--------------------GG-IETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecCCC
Confidence 34589999999999999999986 45 47999988753
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.33 Score=40.87 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=29.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
+|+|||.|--|...|..|.+.| . +++|+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G--v~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG--VGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCC
Confidence 5899999999999999999999 5 799999773
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.97 Score=45.26 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|||+|..|+-+|..|.+ .|.-+|+++.|++..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~--------------------~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK--------------------HSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------cCCCCEEEEecCCcC
Confidence 69999999999999999986 343479999988543
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.16 Score=49.70 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=58.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC--CceEE-EEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVD-IIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~~~v~-lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
.++.|-|||+|+-|-.+|..|.|+.- +.+|. +|+..-..+ -+.|. -+.+.-.+.++..|+.++.+..
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~-----kiLPe-----yls~wt~ekir~~GV~V~pna~ 415 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME-----KILPE-----YLSQWTIEKIRKGGVDVRPNAK 415 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh-----hhhHH-----HHHHHHHHHHHhcCceeccchh
Confidence 46789999999999999999998751 12332 333221110 01122 2222334556777899888877
Q ss_pred ece--------EEEeccccc-ccCEEEEccCCCCCCC
Q 014990 95 LGS--------SVSLSELRQ-LYHVVVLAYGAESDRA 122 (415)
Q Consensus 95 v~~--------~v~~~~~~~-~~d~lvlAtG~~~~~~ 122 (415)
+.. .+.+.++.. ..|.||+|+|. .|+.
T Consensus 416 v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~-ePN~ 451 (659)
T KOG1346|consen 416 VESVRKCCKNLVLKLSDGSELRTDLVVVAVGE-EPNS 451 (659)
T ss_pred hhhhhhhccceEEEecCCCeeeeeeEEEEecC-CCch
Confidence 632 244555543 78999999998 4443
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.14 Score=44.59 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++.+|+|+|+|.+|..|+..|...| .+++++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCC
Confidence 5689999999999999999999999 999999976
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.3 Score=47.12 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=36.4
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
+.+|++++++.+++++ . +++.+.++...+. .+|....+.++.||+|||-
T Consensus 182 ~~gV~i~~~t~v~~Li--~-d~g~V~GV~~~~~-------------~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 182 AGTVKMYTRTEMLDLV--V-VDGRARGIVARNL-------------VTGEIERHTADAVVLATGG 230 (640)
T ss_pred hcCCEEEeceEEEEEE--E-eCCEEEEEEEEEC-------------CCCcEEEEECCEEEECCCC
Confidence 4579999999999987 4 4567777765431 1344457999999999995
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.27 Score=49.34 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=28.0
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+|+|||+|..|+-+|..|.+ .|. +|+++.|++.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ--------------------RGI-EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEEcCCc
Confidence 69999999999999999986 454 7999988753
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.76 Score=45.94 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEcCChhHHHHHHHHhc
Q 014990 163 VILGQGNVALDVARILLR 180 (415)
Q Consensus 163 ~VVG~G~sg~e~a~~L~~ 180 (415)
+|||+|++|+-+|..+++
T Consensus 1 vIIGgG~aGl~aAi~aa~ 18 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR 18 (400)
T ss_pred CEEEEeHHHHHHHHHHHh
Confidence 589999999999999986
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.3 Score=45.67 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=35.9
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEec-CeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC-GMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~-D~vi~atG~~p 346 (415)
+.++.+++++.+++++ .++++++.++.... .++...+.+ +.||+|||-..
T Consensus 189 ~~gv~i~~~~~v~~l~--~~~~g~v~Gv~~~~---------------~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 189 ALGVQIRYDTRATRLI--VDDDGRVVGVEARR---------------YGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hCCCEEEeCCEEEEEE--ECCCCCEEEEEEEe---------------CCcEEEEEeCCEEEECCCCcC
Confidence 5689999999999887 41246777776632 344457888 99999999543
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.38 Score=44.15 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...+|+|||.|--|..+|..|++.| -.+++|+|..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 5778999999999999999999999 3489999876
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.16 Score=49.00 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+..++|+|||+|.-|.+.|..|++.| ++|+++.+.+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC
Confidence 46689999999999999999999999 9999998753
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.4 Score=45.40 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=34.3
Q ss_pred eeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 281 RELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 281 ~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
.+|++++++.+++++ . +++.+.++...+ .+....+.++.||+|||-..
T Consensus 142 ~gi~i~~~~~v~~l~--~-~~g~v~Gv~~~~---------------~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 142 PNIRIIEGENALDLL--I-ETGRVVGVWVWN---------------RETVETCHADAVVLATGGAG 189 (488)
T ss_pred CCcEEEECeEeeeee--c-cCCEEEEEEEEE---------------CCcEEEEEcCEEEECCCccc
Confidence 479999999999987 4 356666665533 12334789999999999643
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.4 Score=46.22 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.5
Q ss_pred eEEEEcCChhHHHHHHHHhc
Q 014990 161 TAVILGQGNVALDVARILLR 180 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~ 180 (415)
.|+|||+|.+|+++|..+++
T Consensus 2 DViVIGaG~AGl~aA~ala~ 21 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAAR 21 (617)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 48999999999999999986
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.12 Score=53.58 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=34.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
....++.+|||||.||...|.+|.+. |+.+|.|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 34689999999999999999999987 47899999998543
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.3 Score=43.79 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|.+|+-+|..|.+ .| .+|+++.+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~--------------------~G-~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR--------------------AG-ASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--------------------CC-CeEEEEeCCCC
Confidence 34579999999999999999986 45 47999988753
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.53 Score=43.56 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| --+++|+|...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCc
Confidence 5678999999999999999999999 34899998763
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.65 Score=47.38 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
.-.|+|||||..|||+|...++
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaAR 25 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAAR 25 (621)
T ss_pred CCceEEECCCccchHHHHhhhc
Confidence 3579999999999999999986
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.22 Score=47.11 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.+-+|+|||||.+|..+|.-+.-.| .+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccC--CeeEEEecC
Confidence 3557999999999999999999999 999999988
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.58 Score=41.94 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...+|+|||.|--|..+|..|.+.| -.+++|+|..
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~G-Vg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAG-IDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEECC
Confidence 4678999999999999999999999 2469999876
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.12 Score=51.13 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 29 PAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 29 ~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
.|||+||.+|++.| .+|+|+|+++.+||...
T Consensus 1 iaGL~aA~~L~~~G--~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAG--YDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTT--TEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCC--CCEEEEEcCCCCCcceE
Confidence 48999999999999 99999999999999754
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.064 Score=54.18 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...+|+|||||..|.-||.-..-+| .++.|+|+++...|..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRG--LktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRG--LKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhccc--ceeEEEecccccCCcc
Confidence 4589999999999999999999999 9999999998655543
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.18 Score=48.55 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||+|.-|...|.+|.+.| .+|+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEech
Confidence 568999999999999999999998 9999999753
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.21 Score=42.29 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
|+|+|+|..|...|..|.+.+ .+|+++.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC--CceEEEEc
Confidence 789999999999999999988 99999974
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.18 Score=48.55 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=31.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|.|||+|.-|.+.|..|++.| ++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHH
Confidence 47999999999999999999999 99999998753
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.58 Score=43.42 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...+|+|||.|.-|..+|..|++.| -.+++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 5789999999999999999999999 3489999876
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.5 Score=41.84 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
..+|+|||+|++|+-+|..|.+
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~ 24 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSR 24 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhh
Confidence 3579999999999999999986
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.34 Score=43.52 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
....++|+|+|.|-.|..+|..|.+.| .+|+++|+.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 446789999999999999999999999 999998854
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.3 Score=44.79 Aligned_cols=48 Identities=6% Similarity=0.033 Sum_probs=33.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
..+|++++++.+++++ . +++.+.++.... ++....+.++.||+|||-.
T Consensus 141 ~~gV~i~~~t~v~~Li--~-~~~~v~Gv~~~~---------------~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 141 RKNITIIENCYLVDII--E-NDNTCIGAICLK---------------DNKQINIYSKVTILATGGI 188 (433)
T ss_pred cCCCEEEECcEeeeeE--e-cCCEEEEEEEEE---------------CCcEEEEEcCeEEEccCcc
Confidence 3489999999999986 4 356565554322 2333478999999999953
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.6 Score=43.14 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=18.7
Q ss_pred eEEEEcCChhHHHHHHHHhc
Q 014990 161 TAVILGQGNVALDVARILLR 180 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~ 180 (415)
+|+|||+|.+|+-+|..|.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 59999999999999999986
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.27 Score=41.09 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+++|+|||+|.+|-.++..|.. .+.++++++.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--------------------~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--------------------LGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--------------------TTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--------------------cCCCEEEEEECCH
Confidence 68999999999999999999986 6888999999984
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.7 Score=45.53 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=35.6
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
+.|+++++++.+++++ . +++.+.++...+. .+++...+.++.||+|||-.
T Consensus 141 ~~gv~i~~~~~v~~L~--~-~~g~v~Gv~~~~~-------------~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 141 KLGVSFFNEYFALDLI--H-DDGRVRGVVAYDL-------------KTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HcCCEEEeccEEEEEE--E-eCCEEEEEEEEEC-------------CCCcEEEEECCeEEECCCcc
Confidence 4589999999998887 4 4666766654321 13444578999999999953
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.14 Score=48.83 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=58.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
+-+-+|||||+.+|.||-.|.-.| ++|++.=|+-.+- ++ ..+..+.+.+.++..+++|.......+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg--~~vtVmVRSI~Lr---------GF--Dqdmae~v~~~m~~~Gikf~~~~vp~~V 264 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFG--YDVTVMVRSILLR---------GF--DQDMAELVAEHMEERGIKFLRKTVPERV 264 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcC--CCcEEEEEEeecc---------cc--cHHHHHHHHHHHHHhCCceeecccceee
Confidence 446789999999999999999999 8888876554322 21 1234556677778888888765432110
Q ss_pred ---------------EEecccccccCEEEEccCC
Q 014990 99 ---------------VSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 99 ---------------v~~~~~~~~~d~lvlAtG~ 117 (415)
.+.+.....||.|++|.|.
T Consensus 265 eq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 265 EQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred eeccCCcEEEEeecccccccccchhhhhhhhhcc
Confidence 0111223469999999996
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.61 Score=45.52 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...+|+|||+|--|-.+|..|++.| . +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG--vg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG--VGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC
Confidence 5778999999999999999999999 6 99999986
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.37 Score=40.60 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=30.4
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||+ |.-|.++|..|...+-..++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 58999999 999999999999998555799999654
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.46 Score=50.05 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=62.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
...+-+|||||-=|+.+|..|...| .+++++.-.+.+ +. ......--..++..+++.++++..+..+..
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~G--m~~~Vvh~~~~l---Me------rQLD~~ag~lL~~~le~~Gi~~~l~~~t~e 212 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLG--MEVTVVHIAPTL---ME------RQLDRTAGRLLRRKLEDLGIKVLLEKNTEE 212 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCC--CceEEEeecchH---HH------HhhhhHHHHHHHHHHHhhcceeecccchhh
Confidence 4455799999999999999999999 999998733321 11 111122233456677788888887655421
Q ss_pred --------EEEecccc-cccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELR-QLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~-~~~d~lvlAtG~~~~~~ 122 (415)
.+..+++. ..+|.||.|+|. .|+.
T Consensus 213 i~g~~~~~~vr~~DG~~i~ad~VV~a~GI-rPn~ 245 (793)
T COG1251 213 IVGEDKVEGVRFADGTEIPADLVVMAVGI-RPND 245 (793)
T ss_pred hhcCcceeeEeecCCCcccceeEEEeccc-cccc
Confidence 23344444 379999999998 4443
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.23 Score=47.53 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=29.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
++|+|||+|..|...|..|++.| ++|+++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEec
Confidence 47999999999999999999998 99999986
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 415 | ||||
| 1cjc_A | 460 | Structure Of Adrenodoxin Reductase Of Mitochondrial | 1e-90 | ||
| 1lqt_A | 456 | A Covalent Modification Of Nadp+ Revealed By The At | 2e-78 | ||
| 2c7g_A | 456 | Fpra From Mycobacterium Tuberculosis: His57gln Muta | 1e-77 |
| >pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450 Systems Length = 460 | Back alignment and structure |
|
| >pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic Resolution Structure Of Fpra, A Mycobacterium Tuberculosis Oxidoreductase Length = 456 | Back alignment and structure |
|
| >pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant Length = 456 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 415 | |||
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 1e-159 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 1e-157 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 1e-21 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 1e-20 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 9e-08 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 7e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 |
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 456 bits (1175), Expect = e-159
Identities = 166/398 (41%), Positives = 227/398 (57%), Gaps = 23/398 (5%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-----QVDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA VD+++ LPTP+GLVRSGVAPDHP+ K
Sbjct: 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 62
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+SDR L IPGEDL G
Sbjct: 63 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGS 122
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+A +FV WYN HP + +SPDL S AV++G GNVALDVARILL + LA TDIA +
Sbjct: 123 IAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADH 181
Query: 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253
A +L I++V +VGRRGP+QAA T ELRE+ + + V I + + TDE+
Sbjct: 182 ALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAE-LDGITDEDAAA 240
Query: 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
++ ++ ++L A +P G R + F F P V + +
Sbjct: 241 VGKVCKQNIKVLRGYAD---REPRPGHRRMVFRFLTSPIEIKG----KRKVERIVLGRNE 293
Query: 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373
L G G+ A TGE E+L +V++S+GY+ VP GLPFD+ G +PN+ GR+
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIPNVGGRING--- 350
Query: 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
YV GW+KRGPTG+I TN A++TV +L
Sbjct: 351 ------SPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTL 382
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460 | Back alignment and structure |
|---|
Score = 450 bits (1159), Expect = e-157
Identities = 188/402 (46%), Positives = 246/402 (61%), Gaps = 20/402 (4%)
Query: 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE K VI
Sbjct: 3 QEQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVI 62
Query: 76 NQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135
N F++ + +RC+F+GNV +G V++ EL+ YH VVL+YGAE +AL IPGE+L GV S
Sbjct: 63 NTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFS 122
Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195
AR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL P + L TDI A
Sbjct: 123 ARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAAL 181
Query: 196 TALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255
AL S ++ V++VGRRGP+Q A T KELRE++ + + D + + +
Sbjct: 182 GALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADF--LGLQDRIKEAA 239
Query: 256 RIQRRVYELLSKAAAS-----ASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310
R ++R+ ELL + A +++ R FFR P L S + +G+
Sbjct: 240 RPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDG-RRAAGIRLA 298
Query: 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVL 369
T L+G G + AV TG+ EDL CG+VL SIGYKS P++ +PFD G+VPN+ GRV+
Sbjct: 299 VTRLEGIGEATR-AVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVV 357
Query: 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411
GLY GW+KRGPTG+I T + + T L
Sbjct: 358 D---------VPGLYCSGWVKRGPTGVITTTMTDSFLTGQIL 390
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 1e-21
Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 96/383 (25%)
Query: 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
V V+G+GPAG AE+ ++ V + DR GL+ G+ P K V+ +
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRV 179
Query: 80 RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF 139
+++ + N +G SL ELR+ + V++A G R + PG L + +A ++
Sbjct: 180 KLLADAGVIYHPNFEVGRDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDY 239
Query: 140 VWWYNGHPDGKNLSPDLKSTDTA-----VILGQGNVALDVARILLRPTEELATTDIASYA 194
+ N G + + A V+LG G+ A+D R
Sbjct: 240 LTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVR------------------ 281
Query: 195 WTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254
TA+ R+G A +K LY R D + M
Sbjct: 282 -TAI------------RQG-------ATS------VKCLY--RR---------DRKNMPG 304
Query: 255 SRIQRRVYELLSKAAASASSQPMLGQRE-LHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313
S QR V A A + E + F++ P+ F V+GV +
Sbjct: 305 S--QREV--------AHA-------EEEGVEFIWQAAPEGFTGD----TVVTGVRAVRIH 343
Query: 314 LKGGGP-GKQYAV---GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369
L G+Q G+ EF + +V+K++G++ + + + G +L
Sbjct: 344 LGVADATGRQTPQVIEGS-EFT-VQADLVIKALGFEPEDLPNAF--DEPELKVTRWGTLL 399
Query: 370 KNISGDSSQVENGLYVCGWLKRG 392
+ + ++ G++ G + RG
Sbjct: 400 VDHRTKMTNMD-GVFAAGDIVRG 421
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 1e-20
Identities = 54/375 (14%), Positives = 105/375 (28%), Gaps = 128/375 (34%)
Query: 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
++ ++G+GPA A + + + + I ++ GL S + P+ ++ +
Sbjct: 189 KIALLGAGPASISCASFLARLGYSD--ITIFEKQEYVGGLSTSEI----PQFRLPYD--- 239
Query: 80 RVVQHERCS-------FFGNVTLG-SSVSLSELR-QLYHVVVLAYGAESDRALGIPG--E 128
VV E +L + ++L+ L+ + Y + G + I
Sbjct: 240 -VVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLT 298
Query: 129 DLIGVHSAREF---VWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEEL 185
G +++++F V + SP ++LG G+ A D A
Sbjct: 299 QDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCAT--------- 349
Query: 186 ATTDIASYAWTALEGSSIR----KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241
S++R +V+LV R+
Sbjct: 350 ---------------SALRCGARRVFLVFRK----------------------------- 365
Query: 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH--------FVFFRKPDS 293
+ A E+ F+ F P
Sbjct: 366 ------GFVNI------------------RAV------PEEVELAKEEKCEFLPFLSPRK 395
Query: 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLP 353
+ G + V F +T GK + L +V+ + G SV +
Sbjct: 396 VIVKG---GRIVAVQFVRTEQ--DETGKWNED-EDQIVHLKADVVISAFG--SVLRDPKV 447
Query: 354 FDNHKGIVPNIRGRV 368
+ I N
Sbjct: 448 KEALSPIKFNRWDLP 462
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 29/170 (17%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPTPFGLVR-SGVAPDHPETKI 73
+ VVG+GPAG A A H QV + D G + P E
Sbjct: 371 VQKKNLAVVGAGPAGLAFA-INAAARGH---QVTLFDAHSEIGGQFNIAKQIPGKEEFYE 426
Query: 74 VINQFSRVVQHERCSFFGNVT--LGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
+ + R+++ VT L +V+ +L+ + +LA G R I G D
Sbjct: 427 TLRYYRRMIEVT------GVTLKLNHTVTADQLQA-FDETILASGIVP-RTPPIDGIDHP 478
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181
V S + + + P G I+G G + D A L +P
Sbjct: 479 KVLSYLDVL--RDKAPVGNK----------VAIIGCGGIGFDTAMYLSQP 516
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 50/216 (23%)
Query: 18 NPLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
+ RV VVG+GP+G A + L + V + + G V A
Sbjct: 390 SDARVLVVGAGPSGLEAA-RALGVRGY---DVVLAEAGRDLGGRVTQESALPGLS----- 440
Query: 76 NQFSRVVQH--ERCSFFGNVT--LGSSVSLSELRQL-YHVVVLAYGA-------ESDRAL 123
+ RV ++ + NV S ++ ++ + + V+ A GA
Sbjct: 441 -AWGRVKEYREAVLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTT 499
Query: 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGN--VALDVARILLRP 181
+P + + V + + L V+ + + VA
Sbjct: 500 ALPIAEGMQVLGPDDL------------FAGRLPDGKKVVVYDDDHYYLGGVVA------ 541
Query: 182 TEELA-----TTDIASYAWTALEGSSIRKVYLVGRR 212
E LA + + A + ++ +V + RR
Sbjct: 542 -ELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRR 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 35/230 (15%), Positives = 67/230 (29%), Gaps = 59/230 (25%)
Query: 223 ELREILGIKNLYVHIREDDLIKSPTDEE---------EMKNSRI-QRRV-------YELL 265
+ IL + + D +I S K + Q+ V Y+ L
Sbjct: 41 MPKSILSKEEI------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 266 SKAAASASSQPMLGQR---ELHFVFFRKPDSFLESN-ERSGHVSGVHFEKTALK------ 315
+ QP + R E + F + N R + + AL
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLELRPAK 151
Query: 316 -----G-GGPGKQY-AVGTGEFEDLDCGMVLK----SIGYKSVPVNGLPFDNHKGIVPNI 364
G G GK + A+ + C M K ++ + P L ++ +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE------MLQKL 205
Query: 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414
++ N + S N ++ ++ + Y + L L+
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-----NCL-LV 249
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 415 | |||
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 100.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.98 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.98 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.98 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.98 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.97 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.97 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 99.97 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.97 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.97 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.97 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.97 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.97 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.97 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 99.97 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.97 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.97 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.97 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.97 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.97 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.97 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.97 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.97 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.97 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.97 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.97 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.97 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.97 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.97 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.97 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.97 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.97 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.97 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.97 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.97 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.97 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.97 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.97 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.97 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.97 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.97 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.97 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.97 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.97 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.97 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.97 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.97 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.97 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.97 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.97 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.96 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.96 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.96 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.96 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.96 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.96 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.96 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.96 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.95 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.95 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.95 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.95 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.95 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.94 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.94 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.94 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.94 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.93 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.93 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.91 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.9 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.89 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.84 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.66 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.65 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.35 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.14 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.9 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.88 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.87 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.7 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.67 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.65 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.63 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.58 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.58 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.48 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.48 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.48 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.46 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.45 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.44 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.4 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.38 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.37 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.37 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.36 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.36 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.34 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.34 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.33 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.32 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.31 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.29 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.29 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.27 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.27 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.27 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.26 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.26 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.26 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.25 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.23 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.23 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.23 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.22 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.22 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.21 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.17 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.17 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.17 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.17 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.16 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.13 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.13 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.12 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.12 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.09 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.07 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.04 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.04 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.04 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.03 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.98 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 97.98 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 97.98 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.96 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.96 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.95 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.94 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.94 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 97.94 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.94 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 97.94 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.94 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 97.93 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.93 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 97.92 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 97.92 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.92 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.9 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 97.9 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.88 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.87 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.87 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.87 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.87 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 97.86 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.85 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.85 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.85 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 97.83 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.83 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 97.81 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 97.81 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.79 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.79 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.78 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.78 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.78 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.77 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.77 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 97.76 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.75 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.74 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.74 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 97.73 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.72 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.72 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.71 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.71 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.71 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.7 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.69 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 97.69 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.69 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.68 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.67 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 97.66 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.64 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 97.64 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.63 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.62 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.61 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.61 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 97.61 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.61 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 97.6 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.59 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.59 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.59 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 97.58 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.57 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.57 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.56 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.55 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.54 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 97.54 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 97.53 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.52 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.49 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.48 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.48 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 97.48 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.47 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.46 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.46 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.46 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 97.41 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.39 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.39 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.38 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.38 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.37 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.37 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.35 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.33 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.31 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 97.3 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.29 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 97.25 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.24 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.24 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 97.23 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 97.22 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.21 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.21 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.21 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.2 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 97.2 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 97.2 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.19 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.18 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.17 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.13 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.12 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 97.12 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.11 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 97.1 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.04 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 97.04 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.03 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.02 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.0 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.99 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 96.97 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 96.97 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 96.94 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 96.93 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 96.87 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 96.87 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 96.85 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.83 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 96.81 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 96.78 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 96.78 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.74 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 96.72 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 96.7 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 96.66 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 96.65 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 96.63 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 96.56 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 96.53 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.49 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 96.44 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 96.42 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 96.39 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 96.38 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 96.36 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 96.36 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 96.34 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.31 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 96.31 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.29 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 96.22 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.2 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.2 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.19 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 96.17 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 96.08 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 96.06 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 96.06 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 96.06 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 96.03 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 96.02 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.01 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 96.01 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 95.97 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 95.97 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 95.94 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 95.92 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 95.89 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.85 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 95.82 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 95.8 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.77 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 95.74 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.7 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 95.68 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.66 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 95.64 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 95.64 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.57 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 95.56 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 95.51 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 95.46 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 95.44 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 95.4 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 95.35 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.34 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.28 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 95.26 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 95.21 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 95.2 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 95.18 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.08 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 94.95 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 94.9 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.9 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 94.87 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 94.85 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 94.7 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.67 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 94.58 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.53 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 94.52 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.5 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 94.48 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 94.38 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 94.35 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.19 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.97 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 93.94 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 93.53 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 93.52 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 93.48 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 93.47 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.45 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 93.44 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 93.43 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 93.11 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 93.09 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 93.01 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 92.96 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 92.96 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 92.82 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 92.78 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 92.71 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 92.66 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 92.66 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 92.63 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 92.63 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 92.62 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 92.6 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 92.44 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 92.18 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 92.14 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 92.1 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.1 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 92.08 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 92.03 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 91.94 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 91.88 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 91.85 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 91.79 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 91.72 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 91.72 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 91.72 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 91.71 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.7 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 91.69 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.69 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 91.68 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 91.66 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 91.64 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 91.62 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 91.54 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 91.54 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 91.47 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 91.43 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 91.41 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 91.39 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 91.18 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 91.16 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 91.16 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 91.15 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 91.12 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 91.02 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 91.01 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.87 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 90.83 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 90.81 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 90.77 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 90.73 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 90.69 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 90.63 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 90.63 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 90.56 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 90.54 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 90.54 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 90.5 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 90.48 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.48 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 90.47 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 90.41 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 90.33 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 90.31 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 90.31 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 90.2 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 90.18 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 90.17 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 90.17 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 90.17 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 90.12 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 90.09 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 90.08 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.03 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 90.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 89.95 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 89.92 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 89.85 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 89.71 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 89.7 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 89.65 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 89.65 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 89.6 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 89.52 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 89.47 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 89.4 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 89.39 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 89.38 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 89.38 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 89.37 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 89.37 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 89.29 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 89.28 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 89.24 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 89.15 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 89.14 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 89.08 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 89.05 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 89.01 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 88.97 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 88.95 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 88.95 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 88.87 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 88.86 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 88.68 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 88.65 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 88.58 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 88.56 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 88.43 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 88.36 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 88.32 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 88.31 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 88.3 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 88.18 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 88.13 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 88.12 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 88.07 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 87.91 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 87.9 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 87.86 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 87.84 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 87.8 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 87.78 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 87.75 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 87.74 |
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=363.00 Aligned_cols=374 Identities=42% Similarity=0.681 Sum_probs=295.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-c------CCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK-A------HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~-~------g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
++++|+||||||||+++|..|++ . + .+|+|||+.+.+||.+.|++.|.+...+++..++.+.++..+++++
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g--~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~ 79 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLD--MAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFF 79 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCC--EEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCC--CeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999 7 6 9999999999999999999988888888888888888888899999
Q ss_pred eceEeceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCC-CCCCCCCCCCCeEEEEcCCh
Q 014990 91 GNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNLSPDLKSTDTAVILGQGN 169 (415)
Q Consensus 91 ~~~~v~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~k~V~VVG~G~ 169 (415)
.++.+++.+++++....||+||+|||+..++.+++||.+.++++++.++..|++.+++. .... .+ .+++|+|||+|+
T Consensus 80 ~~v~v~~~v~~~~~~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~-~~-~~~~vvVIG~G~ 157 (456)
T 1lqt_A 80 GNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSP-DL-SGARAVVIGNGN 157 (456)
T ss_dssp ESCCBTTTBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC-CC-CSSEEEEECCSH
T ss_pred eeEEECCEEEECCCeEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchh-hc-CCCEEEEECCCH
Confidence 88777666666555668999999999954788899999888999999998888766443 1111 22 689999999999
Q ss_pred hHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcH
Q 014990 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (415)
Q Consensus 170 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 249 (415)
+|+|+|..|.+..++|..+||...+.+.++..+.++|+++.|+.++...|+.+|++++.+.|++...+...++. .+...
T Consensus 158 ~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~-~~~~~ 236 (456)
T 1lqt_A 158 VALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELD-GITDE 236 (456)
T ss_dssp HHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGT-TCCHH
T ss_pred HHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhc-cchhh
Confidence 99999999998778899999999999999999988999999999999999999999999988887777666653 12222
Q ss_pred HhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCc
Q 014990 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (415)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~ 329 (415)
.....++.+++..+.+.+.... .+....++|.++++..+.++. . ++.+.++++.+..+..+..|......+|+
T Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~gv~i~~~~~~~~i~--~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~ 309 (456)
T 1lqt_A 237 DAAAVGKVCKQNIKVLRGYADR---EPRPGHRRMVFRFLTSPIEIK--G--KRKVERIVLGRNELVSDGSGRVAAKDTGE 309 (456)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTC---C-CTTSEEEEEECSEEEEEEE--C--SSSCCEEEEEEEEEEECSSSSEEEEEEEE
T ss_pred hhhhccHHHHHHHHHHHHHhhc---CCCCCCceEEEEeCCCCeEEe--c--CCcEeEEEEEEEEecCCCcccccccCCCc
Confidence 2223345666667777665431 001112799999999999997 4 46777788876544322222222223455
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCC-cccCCeeeeeccccCCccchhhhhhhHHHHH
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS-QVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~-t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a 408 (415)
.++++||+||+|+|++|+++. ++.++++|.+.+|+. ++ ++.|||||+|||++++.+++..|+.||+.+|
T Consensus 310 ~~~i~~d~vi~a~G~~p~~l~--------gl~~d~~g~i~vn~~--~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a 379 (456)
T 1lqt_A 310 REELPAQLVVRSVGYRGVPTP--------GLPFDDQSGTIPNVG--GRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTV 379 (456)
T ss_dssp EEEEECSEEEECSCEECCCCT--------TSCCBTTTTBCCEET--TEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHH
T ss_pred eEEEEcCEEEEccccccCCCC--------CCcccCCCCeeECCC--CcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHH
Confidence 568999999999999997632 345566677888776 55 7899999999999888877767999999999
Q ss_pred hhccc
Q 014990 409 SSLSL 413 (415)
Q Consensus 409 ~~i~~ 413 (415)
.+|..
T Consensus 380 ~~i~~ 384 (456)
T 1lqt_A 380 DTLIK 384 (456)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=361.52 Aligned_cols=380 Identities=47% Similarity=0.780 Sum_probs=292.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+||||||||+++|..|++.+++.+|+|||+.+.+||.+.+++.|.+...+++...+.+.+++.+++++.++.+++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 84 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR 84 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEee
Confidence 56899999999999999999999987799999999999999999998888877788888888888889999999988876
Q ss_pred EEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHH
Q 014990 98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~ 177 (415)
.++.++....||+||+|||+..++.|++||.+.++++++.++..+++..++.......+ .+++|+|||+|++|+|+|..
T Consensus 85 ~V~~~~~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~-~~~~vvVIGgG~~g~e~A~~ 163 (460)
T 1cjc_A 85 DVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARI 163 (460)
T ss_dssp TBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESCSHHHHHHHHH
T ss_pred EEEeccceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCC-CCCEEEEECCCHHHHHHHHH
Confidence 66665555689999999999546888999998889999999988887665443332223 58999999999999999999
Q ss_pred HhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHH
Q 014990 178 LLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257 (415)
Q Consensus 178 L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 257 (415)
|.+..++|..+||.+.+++.++..+.++|+++.|+.+...+|+.+|++++.+.|+....+...++.. .........+.
T Consensus 164 L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~--~~~~~~~~~~~ 241 (460)
T 1cjc_A 164 LLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLG--LQDRIKEAARP 241 (460)
T ss_dssp HHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTT--HHHHTTTSCHH
T ss_pred HhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcc--hhhhhhhccHH
Confidence 9998899999999999999999999989999999999999999999999887776666554444321 00011112344
Q ss_pred HHHHHHHHHHHHhccCC-----CCCCCceeEEEEeccccccccccCCCCC-CeeeEEEeeeeecCCCCCcceeccCCceE
Q 014990 258 QRRVYELLSKAAASASS-----QPMLGQRELHFVFFRKPDSFLESNERSG-HVSGVHFEKTALKGGGPGKQYAVGTGEFE 331 (415)
Q Consensus 258 ~~~~~~~l~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~v~~~~~~~~-~v~~v~~~~~~~~~~~~g~~~~~~~g~~~ 331 (415)
++++.+.+.+.....+. .+....+||.++++..+.++. .++++ .+.++++.+..+.+. .+....+.+|+.+
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~--~~~~~~~v~~v~~~~~~l~~~-~~~~~~~~~g~~~ 318 (460)
T 1cjc_A 242 RKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVL--PSPDGRRAAGIRLAVTRLEGI-GEATRAVPTGDVE 318 (460)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEE--ECTTSSSEEEEEEEEEEEESS-GGGCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEE--cCCCCceEEEEEEEEEEEccc-cCCCcccCCCceE
Confidence 55566666554421000 000123899999999999997 41125 787888765433211 0111112245557
Q ss_pred EEecCeeEEeeccCCccCCCCcccCCCCc-cccCCCceeeccCCCCCcc-cCCeeeeeccccCCccchhhhhhhHHHHHh
Q 014990 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGI-VPNIRGRVLKNISGDSSQV-ENGLYVCGWLKRGPTGIIATNLYCAEETVS 409 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~~~~~~~~~~g~-~~~~~G~i~v~~~~~~~t~-~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~ 409 (415)
+++||+||+++|++|+.+ .|+ .++++|.+.+|+. ++++ +|||||+|||++++.+++..|+.||+.+|.
T Consensus 319 ~i~~d~Vi~a~G~~p~~l--------~gl~~~d~~g~i~vn~~--~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~ 388 (460)
T 1cjc_A 319 DLPCGLVLSSIGYKSRPI--------DPSVPFDPKLGVVPNME--GRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQ 388 (460)
T ss_dssp EEECSEEEECCCEECCCC--------CTTSCCBTTTTBCCEET--TEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHH
T ss_pred EEEcCEEEECCCCCCCCC--------CCCcccccCCCeeECCC--CcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHH
Confidence 899999999999999763 345 5666788888876 7788 799999999998888777689999999999
Q ss_pred hccc
Q 014990 410 SLSL 413 (415)
Q Consensus 410 ~i~~ 413 (415)
+|..
T Consensus 389 ~i~~ 392 (460)
T 1cjc_A 389 ILLQ 392 (460)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=333.15 Aligned_cols=316 Identities=22% Similarity=0.323 Sum_probs=240.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++.++|+||||||||+++|..|++.| ++|+|||+.+.+||.+.|++ |.+..++++..+..+.++..+++++.++.++
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 196 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKG--YEVHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRVKLLADAGVIYHPNFEVG 196 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHHTTCEEETTCCBT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCcEEEeCCEec
Confidence 46789999999999999999999999 99999999999999999988 7776777888888888888999999999887
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcC--CCCCCC-CC--CCCCCCCeEEEEcCChhH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG--HPDGKN-LS--PDLKSTDTAVILGQGNVA 171 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~--~~~~~~-~~--~~~~~~k~V~VVG~G~sg 171 (415)
.+++.++....||+||+|||+..++.+++||.+.++++++.+|+...+. ..+... .. .....+|+|+|||+|++|
T Consensus 197 ~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a 276 (456)
T 2vdc_G 197 RDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTA 276 (456)
T ss_dssp TTBCHHHHHSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHH
T ss_pred cEEEhhHhHhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhH
Confidence 6666666666899999999996688889999988899998887664321 000000 00 112368999999999999
Q ss_pred HHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHh
Q 014990 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (415)
Q Consensus 172 ~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~ 251 (415)
+|+|..+.+ .+.++|+++.|++... +|....+
T Consensus 277 ~d~A~~~~r--------------------~Ga~~Vtiv~r~~~~~----------------------------~p~~~~e 308 (456)
T 2vdc_G 277 MDCVRTAIR--------------------QGATSVKCLYRRDRKN----------------------------MPGSQRE 308 (456)
T ss_dssp HHHHHHHHH--------------------TTCSEEEEECSSCSTT----------------------------CSSCHHH
T ss_pred HHHHHHHHH--------------------cCCCEEEEEEeCCccC----------------------------CCCCHHH
Confidence 999998886 5777899999986432 3332221
Q ss_pred hhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceecc-CCc
Q 014990 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGE 329 (415)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~-~g~ 329 (415)
+ +.+. ++||+++++..+.++. . ++++.++++.+..+. .+.+|.+.... +|+
T Consensus 309 ~----------~~~~-------------~~Gv~~~~~~~~~~i~--~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~ 361 (456)
T 2vdc_G 309 V----------AHAE-------------EEGVEFIWQAAPEGFT--G--DTVVTGVRAVRIHLGVADATGRQTPQVIEGS 361 (456)
T ss_dssp H----------HHHH-------------HTTCEEECCSSSCCEE--E--EEEEETTEEEEEEEEEEEECTTCCEEEEEEE
T ss_pred H----------HHHH-------------HCCCEEEeCCCceEEe--C--CCcEEEEEEEEEEecccCCcCCccccccCCc
Confidence 1 1111 5689999999999997 4 566655665543321 11234322222 456
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHh
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVS 409 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~ 409 (415)
+.++++|+||+|+|+.|+... .+....++.++++|++.+|+.+ ++|+.|||||+|||++++..+. .|+.||+.||.
T Consensus 362 ~~~i~aD~Vi~A~G~~p~~~~--~~l~~~gl~~~~~G~i~vd~~~-~~Ts~~~VfA~GD~~~g~~~v~-~A~~~G~~aA~ 437 (456)
T 2vdc_G 362 EFTVQADLVIKALGFEPEDLP--NAFDEPELKVTRWGTLLVDHRT-KMTNMDGVFAAGDIVRGASLVV-WAIRDGRDAAE 437 (456)
T ss_dssp EEEEECSEEEECSCEECCCHH--HHHHSTTSCBCTTSSBCCCTTT-CBCSSTTEEECGGGGSSCCSHH-HHHHHHHHHHH
T ss_pred EEEEECCEEEECCCCCCCcch--hhcccCCeeECCCCCEEECCCC-CcCCCCCEEEeccccCCchHHH-HHHHHHHHHHH
Confidence 678999999999999986510 1445667888889999999875 7899999999999998776555 79999999999
Q ss_pred hcccc
Q 014990 410 SLSLI 414 (415)
Q Consensus 410 ~i~~~ 414 (415)
+|++.
T Consensus 438 ~i~~~ 442 (456)
T 2vdc_G 438 GIHAY 442 (456)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=274.29 Aligned_cols=285 Identities=18% Similarity=0.235 Sum_probs=186.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCC---CCCc--chHHHHHHHHHHhhccCeEEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVA---PDHP--ETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~ 90 (415)
+..++|+||||||||++||.+|++.| .+|+|||+.. +||. ...+.. |.+. ...++.........+.+..+.
T Consensus 4 e~~yDvvIIG~GpAGl~aA~~l~~~g--~~V~liE~~~-~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T 4gcm_A 4 EIDFDIAIIGAGPAGMTAAVYASRAN--LKTVMIERGI-PGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQ 80 (312)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEecCC-CCCeeecccccCCcCCccccchHHHHHHHHHHHhhcccccc
Confidence 34689999999999999999999999 9999999865 5554 333332 3322 223455555555555555555
Q ss_pred eceEec-------eEEEecccccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCCCC
Q 014990 91 GNVTLG-------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 91 ~~~~v~-------~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k 160 (415)
.+.... ..+........||+||||||+ .|+.|++||.+. .++.+. ...... ...+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs-~~~~~~ipG~~~~~~~~v~~~-~~~~~~------------~~~~k 146 (312)
T 4gcm_A 81 YGDIKSVEDKGEYKVINFGNKELTAKAVIIATGA-EYKKIGVPGEQELGGRGVSYC-AVCDGA------------FFKNK 146 (312)
T ss_dssp ECCCCEEEECSSCEEEECSSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESC-HHHHGG------------GGTTC
T ss_pred ceeeeeeeeeecceeeccCCeEEEeceeEEcccC-ccCcCCCCChhhhCCccEEee-eccCcc------------ccCCC
Confidence 443321 122333334579999999999 789999999763 233332 222111 12589
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|++|+|+|..|.+ ...+|+++.|++.+..
T Consensus 147 ~vvViGgG~ig~E~A~~l~~---------------------~g~~Vtlv~~~~~~~~----------------------- 182 (312)
T 4gcm_A 147 RLFVIGGGDSAVEEGTFLTK---------------------FADKVTIVHRRDELRA----------------------- 182 (312)
T ss_dssp EEEEECCSHHHHHHHHHHTT---------------------TCSEEEEECSSSSCCS-----------------------
T ss_pred EEEEECCCHHHHHHHHHHHh---------------------cCCEEEEEecccccCc-----------------------
Confidence 99999999999999999986 3468999999875421
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
..... ...+. ..++............ . .+..........
T Consensus 183 ------~~~~~----------~~~~~-------------~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~--------- 221 (312)
T 4gcm_A 183 ------QRILQ----------DRAFK-------------NDKIDFIWSHTLKSIN--E-KDGKVGSVTLTS--------- 221 (312)
T ss_dssp ------CHHHH----------HHHHH-------------CTTEEEECSEEEEEEE--E-ETTEEEEEEEEE---------
T ss_pred ------chhHH----------HHHHH-------------hcCcceeeecceeeee--c-cccccccceeee---------
Confidence 10000 00111 3345555444433333 1 122111121111
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
...++...+++|.|++++|.+|+. .+....++ .+++|++.+|++ ++||.|||||+|||+..+...+..|
T Consensus 222 ----~~~~~~~~~~~d~v~~~~g~~~~~----~~~~~~g~-~~~~G~I~vd~~--~~Ts~pgIyA~GDv~~~~~~~~~~A 290 (312)
T 4gcm_A 222 ----TKDGSEETHEADGVFIYIGMKPLT----APFKDLGI-TNDVGYIVTKDD--MTTSVPGIFAAGDVRDKGLRQIVTA 290 (312)
T ss_dssp ----TTTCCEEEEECSEEEECSCEEESC----GGGGGGTC-BCTTSCBCCCTT--SBCSSTTEEECSTTBSCSCCSHHHH
T ss_pred ----ecCCceeEEeeeeEEeecCCCcCc----hhHHhcce-ecCCCeEeeCCC--CccCCCCEEEEeecCCCcchHHHHH
Confidence 124566789999999999999976 33344444 456899999987 8999999999999986444445579
Q ss_pred hhhHHHHHhhcccc
Q 014990 401 LYCAEETVSSLSLI 414 (415)
Q Consensus 401 ~~~g~~~a~~i~~~ 414 (415)
+.||+.||.+|.+.
T Consensus 291 ~~~G~~AA~~i~~~ 304 (312)
T 4gcm_A 291 TGDGSIAAQSAAEY 304 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=274.36 Aligned_cols=287 Identities=15% Similarity=0.178 Sum_probs=195.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC----CCCccccC-----C--CCCCcchHHHHHHHHHHhhccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT----PFGLVRSG-----V--APDHPETKIVINQFSRVVQHER 86 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~----~gg~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~ 86 (415)
+.++|+||||||||++||.+|++.| .+|+|||+... ++|.+... . .|......++...+.+.+++.+
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~~g--~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~ 80 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGRSS--LKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYG 80 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcC
Confidence 4589999999999999999999999 99999998753 33332211 1 1222344567777888888888
Q ss_pred eEEEeceEece-------EEEecc-cccccCEEEEccCCCCCCCCCCCCCCCC--CeeechhhHHHhcCCCCCCCCCCCC
Q 014990 87 CSFFGNVTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDLI--GVHSAREFVWWYNGHPDGKNLSPDL 156 (415)
Q Consensus 87 ~~~~~~~~v~~-------~v~~~~-~~~~~d~lvlAtG~~~~~~~~i~g~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (415)
..+........ .+...+ ....||+||||||+ .|+.|++||.+.. ...+...+..... ..
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~-~~~~~~ipG~~~~~~~~~~~~~~~~~~~----------~~ 149 (314)
T 4a5l_A 81 TTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGA-TAKRMHVPGEDKYWQNGVSACAICDGAV----------PI 149 (314)
T ss_dssp CEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCE-EECCCCCTTHHHHBTTTEESCHHHHTTS----------GG
T ss_pred cEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccc-cccccCCCccccccccceeeehhhhhhh----------hh
Confidence 87766554321 122222 23479999999999 7899999997632 2222222221110 12
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEE
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 236 (415)
..+++|+|||+|++|+|+|..|.+ .+ .+|+++.|...... ... +
T Consensus 150 ~~~~~vvViGgG~ig~e~A~~l~~--------------------~G-~~Vt~v~~~~~~~~--~~~-~------------ 193 (314)
T 4a5l_A 150 FRNKVLMVVGGGDAAMEEALHLTK--------------------YG-SKVIILHRRDAFRA--SKT-M------------ 193 (314)
T ss_dssp GTTSEEEEECSSHHHHHHHHHHTT--------------------TS-SEEEEECSSSSCCS--CHH-H------------
T ss_pred cCCCeEEEECCChHHHHHHHHHHH--------------------hC-Ceeeeecccccccc--cch-h------------
Confidence 268999999999999999999986 44 58999998754311 000 0
Q ss_pred EcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecC
Q 014990 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (415)
Q Consensus 237 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~ 316 (415)
..... ...++..+....+.++. . ......++.+...
T Consensus 194 ----------------------------~~~~~---------~~~~~~~~~~~~~~~i~--~-~~~~~~~~~~~~~---- 229 (314)
T 4a5l_A 194 ----------------------------QERVL---------NHPKIEVIWNSELVELE--G-DGDLLNGAKIHNL---- 229 (314)
T ss_dssp ----------------------------HHHHH---------TCTTEEEECSEEEEEEE--E-SSSSEEEEEEEET----
T ss_pred ----------------------------hhhhh---------cccceeeEeeeeeEEEE--e-eeeccceeEEeec----
Confidence 00000 03456666666666665 3 3445555655442
Q ss_pred CCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccc
Q 014990 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGI 396 (415)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~ 396 (415)
..++++++++|.|++++|++|+. .+.. ..+..+++|.+ +|+. ++||.|||||+|||+..+...
T Consensus 230 ---------~~~~~~~i~~d~vi~a~G~~pn~----~~l~-~~~~~~~~G~i-v~~~--~~Ts~pgIyA~GDv~~~~~~~ 292 (314)
T 4a5l_A 230 ---------VSGEYKVVPVAGLFYAIGHSPNS----KFLG-GQVKTADDGYI-LTEG--PKTSVDGVFACGDVCDRVYRQ 292 (314)
T ss_dssp ---------TTCCEEEEECSEEEECSCEEESC----GGGT-TSSCBCTTSCB-CCBT--TBCSSTTEEECSTTTCSSCCC
T ss_pred ---------ccccceeeccccceEecccccCh----hHhc-ccceEcCCeeE-eCCC--CccCCCCEEEEEeccCCcchH
Confidence 14566799999999999999976 2322 34567778888 4444 899999999999999777545
Q ss_pred hhhhhhhHHHHHhhcccc
Q 014990 397 IATNLYCAEETVSSLSLI 414 (415)
Q Consensus 397 ~~~a~~~g~~~a~~i~~~ 414 (415)
...|+.||+.||.+|++.
T Consensus 293 ~~~A~~~G~~AA~~~~~y 310 (314)
T 4a5l_A 293 AIVAAGSGCMAALSCEKW 310 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 557999999999998764
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=274.71 Aligned_cols=292 Identities=14% Similarity=0.158 Sum_probs=207.7
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC----CCCCCccccCC----CCC---CcchHHHHHHHHHHh
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL----PTPFGLVRSGV----APD---HPETKIVINQFSRVV 82 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~----~~~gg~~~~~~----~~~---~~~~~~~~~~~~~~~ 82 (415)
++.+..++|+|||||+||+++|..|++.+ ++|+|||+. ..+||.+.+.. .|. .....++..++.+.+
T Consensus 17 ~~~~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T 3itj_A 17 RGSHVHNKVTIIGSGPAAHTAAIYLARAE--IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQS 94 (338)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHH
Confidence 33456789999999999999999999999 999999994 46888765431 122 234567788888888
Q ss_pred hccCeEEEeceEeceE-------EEe----cccccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCC
Q 014990 83 QHERCSFFGNVTLGSS-------VSL----SELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPD 148 (415)
Q Consensus 83 ~~~~~~~~~~~~v~~~-------v~~----~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~ 148 (415)
++.+++++.++.+..+ +.. +.....||+||+|||+ .++.|++||.+ ...+.+... .. ...
T Consensus 95 ~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~-~~~~~~~~g~~~~~~~~~~~~~~-~~---~~~- 168 (338)
T 3itj_A 95 TKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA-SAKRMHLPGEETYWQKGISACAV-CD---GAV- 168 (338)
T ss_dssp HHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCE-EECCCCCTTHHHHBTTTEESCHH-HH---TTS-
T ss_pred HHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCC-CcCCCCCCCchhccCccEEEchh-cc---cch-
Confidence 8889999888743221 222 1123479999999999 67888888864 223333221 11 110
Q ss_pred CCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHH
Q 014990 149 GKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREIL 228 (415)
Q Consensus 149 ~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~ 228 (415)
....+++|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+.. .+
T Consensus 169 ------~~~~~~~v~vvG~G~~g~e~a~~l~~--------------------~-g~~v~~v~~~~~~~~---~~------ 212 (338)
T 3itj_A 169 ------PIFRNKPLAVIGGGDSACEEAQFLTK--------------------Y-GSKVFMLVRKDHLRA---ST------ 212 (338)
T ss_dssp ------GGGTTSEEEEECSSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCS---CH------
T ss_pred ------hhcCCCEEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEEcCCccCC---CH------
Confidence 01268999999999999999999986 3 358999998865321 00
Q ss_pred cCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEE
Q 014990 229 GIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVH 308 (415)
Q Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~ 308 (415)
...+.+.+ ..||+++++..+.++. . +++.+..++
T Consensus 213 -------------------------------~~~~~l~~------------~~gv~i~~~~~v~~i~--~-~~~~~~~v~ 246 (338)
T 3itj_A 213 -------------------------------IMQKRAEK------------NEKIEILYNTVALEAK--G-DGKLLNALR 246 (338)
T ss_dssp -------------------------------HHHHHHHH------------CTTEEEECSEEEEEEE--E-SSSSEEEEE
T ss_pred -------------------------------HHHHHHHh------------cCCeEEeecceeEEEE--c-ccCcEEEEE
Confidence 01111110 3489999999999997 4 345576777
Q ss_pred EeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeec
Q 014990 309 FEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGW 388 (415)
Q Consensus 309 ~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD 388 (415)
+.+. .+|++++++||.||+|+|++|+. .+... ++.++++|++.+++.. ++|+.|||||+||
T Consensus 247 ~~~~-------------~~g~~~~i~~D~vi~a~G~~p~~----~~~~~-~l~~~~~G~i~v~~~~-~~t~~~~vya~GD 307 (338)
T 3itj_A 247 IKNT-------------KKNEETDLPVSGLFYAIGHTPAT----KIVAG-QVDTDEAGYIKTVPGS-SLTSVPGFFAAGD 307 (338)
T ss_dssp EEET-------------TTTEEEEEECSEEEECSCEEECC----GGGBT-TBCBCTTSCBCCCTTS-SBCSSTTEEECGG
T ss_pred EEEC-------------CCCceEEEEeCEEEEEeCCCCCh----hHhhC-ceEecCCCcEEEcCcc-cccCCCCEEEeec
Confidence 7652 14566789999999999999965 34344 7888889999864444 8999999999999
Q ss_pred cccCCccchhhhhhhHHHHHhhcccc
Q 014990 389 LKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 389 ~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|+..+......|+.||+.||.+|.+.
T Consensus 308 ~~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (338)
T 3itj_A 308 VQDSKYRQAITSAGSGCMAALDAEKY 333 (338)
T ss_dssp GGCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCccceeeehhhhHHHHHHHHHH
Confidence 99754444557999999999998753
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=268.70 Aligned_cols=283 Identities=18% Similarity=0.225 Sum_probs=205.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEE-EcCCCCCCCccccCC----CCCCc---chHHHHHHHHHHhhccCeEE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLPTPFGLVRSGV----APDHP---ETKIVINQFSRVVQHERCSF 89 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~l-ie~~~~~gg~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~ 89 (415)
.+++|+|||||+||+++|..|++.+ ++|+| +|+ +.+||.+.+.. .|.+. ...++..++.+.+++.++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGG--LKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKH 79 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHT--CSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCC--CCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEE
Confidence 5689999999999999999999999 99999 999 66677654321 13322 45678888888899899998
Q ss_pred EeceEece--------E--EEecccccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCC
Q 014990 90 FGNVTLGS--------S--VSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDL 156 (415)
Q Consensus 90 ~~~~~v~~--------~--v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (415)
+.+..+.. . +..+. ...||+||+|||+ .++.|++||.+. ..+++... .... .
T Consensus 80 ~~~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~-~~~~~~~~g~~~~~~~~~~~~~~-~~~~------------~ 144 (315)
T 3r9u_A 80 EMVGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGS-APKKAGFKGEDEFFGKGVSTCAT-CDGF------------F 144 (315)
T ss_dssp ECCCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCE-EECCCCCBTTTTTBTTTEESCHH-HHGG------------G
T ss_pred EEEEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCC-CCCCCCCCChhhcCCCeEEeeec-cccc------------c
Confidence 87744322 1 11112 4579999999999 788888998763 44443322 2111 1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEE
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 236 (415)
..+++|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+. .... +
T Consensus 145 ~~~~~v~viG~g~~~~e~a~~l~~--------------------~-g~~v~~~~~~~~~~--~~~~-~------------ 188 (315)
T 3r9u_A 145 YKNKEVAVLGGGDTALEEALYLAN--------------------I-CSKIYLIHRRDEFR--AAPS-T------------ 188 (315)
T ss_dssp GTTSEEEEECCBHHHHHHHHHHHT--------------------T-SSEEEEECSSSSCB--SCHH-H------------
T ss_pred cCcCEEEEECCCHHHHHHHHHHHh--------------------h-CCEEEEEEeCCCCC--CCHH-H------------
Confidence 257999999999999999999986 3 36899999886431 0110 0
Q ss_pred EcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecC
Q 014990 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (415)
Q Consensus 237 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~ 316 (415)
..+++. +.||+++++..+.++. . +++.+..+++..
T Consensus 189 ------------------------~~~~~~-------------~~gv~~~~~~~v~~i~--~-~~~~~~~v~~~~----- 223 (315)
T 3r9u_A 189 ------------------------VEKVKK-------------NEKIELITSASVDEVY--G-DKMGVAGVKVKL----- 223 (315)
T ss_dssp ------------------------HHHHHH-------------CTTEEEECSCEEEEEE--E-ETTEEEEEEEEC-----
T ss_pred ------------------------HHHHHh-------------cCCeEEEeCcEEEEEE--c-CCCcEEEEEEEc-----
Confidence 011111 5689999999999987 4 344666666641
Q ss_pred CCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccC---CCC-ccccCCCceeeccCCCCCcccCCeeeeeccccC
Q 014990 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDN---HKG-IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG 392 (415)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~---~~g-~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~ 392 (415)
.+|+..++++|.||+|+|++|+. .+.. ..| +.++++|++.+|++ ++|+.|||||+|||+..
T Consensus 224 ---------~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~~~~g~l~~~~~g~i~vd~~--~~t~~~~v~a~GD~~~~ 288 (315)
T 3r9u_A 224 ---------KDGSIRDLNVPGIFTFVGLNVRN----EILKQDDSKFLCNMEEGGQVSVDLK--MQTSVAGLFAAGDLRKD 288 (315)
T ss_dssp ---------TTSCEEEECCSCEEECSCEEECC----GGGBCTTSCBSSCBCTTSCBCCCTT--CBCSSTTEEECGGGBTT
T ss_pred ---------CCCCeEEeecCeEEEEEcCCCCc----hhhhcccccceeeecCCCcEEeCCC--cccCCCCEEEeecccCC
Confidence 14555689999999999999976 2322 244 77888899999996 88999999999999854
Q ss_pred CccchhhhhhhHHHHHhhcccc
Q 014990 393 PTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 393 ~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
+......|+.||+.||.+|.+.
T Consensus 289 ~~~~~~~A~~~g~~aa~~i~~~ 310 (315)
T 3r9u_A 289 APKQVICAAGDGAVAALSAMAY 310 (315)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHhhHHHHHHHHHHH
Confidence 4444557999999999998753
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=311.22 Aligned_cols=311 Identities=18% Similarity=0.229 Sum_probs=228.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
+.++|+||||||||+++|.+|++.| + +|+|||+.+.+||.+.+++ |.+..++++.+...+.++..+++++.++.++
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G--~~~Vtv~E~~~~~GG~~~~~i-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 262 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLS 262 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--CCcEEEEeCCCCCCccccccC-CcccCCHHHHHHHHHHHHHCCcEEEcccEec
Confidence 4689999999999999999999999 8 7999999999999998888 7666667777777788888899999998875
Q ss_pred e-EEEecccc-cccCEEEEccCCCCCCCCCC-CCCC-CCCeeechhhHHHhcCC-C-CCCCCCCC-CCCCCeEEEEcCCh
Q 014990 97 S-SVSLSELR-QLYHVVVLAYGAESDRALGI-PGED-LIGVHSAREFVWWYNGH-P-DGKNLSPD-LKSTDTAVILGQGN 169 (415)
Q Consensus 97 ~-~v~~~~~~-~~~d~lvlAtG~~~~~~~~i-~g~~-~~~v~~~~~~~~~~~~~-~-~~~~~~~~-~~~~k~V~VVG~G~ 169 (415)
. +++++++. ..||+||||||+..|+.+++ +|.+ ..+++++.+|+...+.. . ........ ...+++|+|||+|+
T Consensus 263 ~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~ 342 (1025)
T 1gte_A 263 ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGD 342 (1025)
T ss_dssp TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSH
T ss_pred cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCCh
Confidence 3 45555543 58999999999954766664 4654 46889888887644211 0 00000000 11367999999999
Q ss_pred hHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcH
Q 014990 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (415)
Q Consensus 170 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 249 (415)
+|+|+|..+.+ .|.++|+++.|++... +|...
T Consensus 343 ~g~e~A~~~~~--------------------~G~~~Vtvv~r~~~~~----------------------------~~~~~ 374 (1025)
T 1gte_A 343 TAFDCATSALR--------------------CGARRVFLVFRKGFVN----------------------------IRAVP 374 (1025)
T ss_dssp HHHHHHHHHHH--------------------TTCSEEEEECSSCGGG----------------------------CCSCH
T ss_pred HHHHHHHHHHH--------------------cCCCEEEEEEecChhh----------------------------CCCCH
Confidence 99999999986 5777999999986322 22222
Q ss_pred HhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCc
Q 014990 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (415)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~ 329 (415)
.++ +.+. ++||+++++..+.++. . +++.+.++++.+... +.+|..+.. +|+
T Consensus 375 ~e~----------~~~~-------------~~Gv~~~~~~~~~~i~--~-~~g~v~~v~~~~~~~--~~~g~~~~~-~g~ 425 (1025)
T 1gte_A 375 EEV----------ELAK-------------EEKCEFLPFLSPRKVI--V-KGGRIVAVQFVRTEQ--DETGKWNED-EDQ 425 (1025)
T ss_dssp HHH----------HHHH-------------HTTCEEECSEEEEEEE--E-ETTEEEEEEEEEEEE--CTTSCEEEE-EEE
T ss_pred HHH----------HHHH-------------HcCCEEEeCCCceEEE--c-cCCeEEEEEEEEeEE--cCCCCcccC-CCc
Confidence 111 1111 5689999998888887 4 467787787765432 223443222 355
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHH
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a 408 (415)
..++++|+||+|+|++|+.. .|... .|+.++++|++.+|+.+ ++|+.|||||+|||++++..+. .|+.||+.||
T Consensus 426 ~~~i~aD~Vi~A~G~~~~~~---~l~~~~~gl~~~~~G~I~vd~~~-~~Ts~~~VfA~GD~~~~~~~~~-~A~~~G~~aA 500 (1025)
T 1gte_A 426 IVHLKADVVISAFGSVLRDP---KVKEALSPIKFNRWDLPEVDPET-MQTSEPWVFAGGDIVGMANTTV-ESVNDGKQAS 500 (1025)
T ss_dssp EEEEECSEEEECSCEECCCH---HHHHHTTTSCBCTTSSBCCCTTT-CBCSSTTEEECSGGGCSCCCHH-HHHHHHHHHH
T ss_pred eEEEECCEEEECCCCCCCch---hhhhcccCceECCCCCEEECCCC-CccCCCCEEEeCCCCCCchHHH-HHHHHHHHHH
Confidence 56899999999999987431 23222 47778888999999744 8899999999999998776555 7999999999
Q ss_pred hhccc
Q 014990 409 SSLSL 413 (415)
Q Consensus 409 ~~i~~ 413 (415)
.+|+.
T Consensus 501 ~~i~~ 505 (1025)
T 1gte_A 501 WYIHK 505 (1025)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=263.68 Aligned_cols=282 Identities=21% Similarity=0.214 Sum_probs=201.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCC---cchHHHHHHHHHHhhccCeEEE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
..++|+||||||||+++|..|++.+ .+|+|||+. .+||.+.+. ..|.+ ....++..++.+.+++.+++++
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 83 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQ--LSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVE 83 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcC--CcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 4679999999999999999999998 999999998 566655432 11222 2345667777888888888887
Q ss_pred eceEece----------EEEeccc-ccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCC
Q 014990 91 GNVTLGS----------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDL 156 (415)
Q Consensus 91 ~~~~v~~----------~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 156 (415)
.+..... .+...++ ...||+||+|||+ .++.|++||.+. ..+++.. ..... .
T Consensus 84 ~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~-~~~~~~i~g~~~~~~~~~~~~~-~~~~~------------~ 149 (325)
T 2q7v_A 84 MDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGA-DPRKLGIPGEDNFWGKGVSTCA-TCDGF------------F 149 (325)
T ss_dssp ECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCH-HHHGG------------G
T ss_pred eeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCC-CcCCCCCCChhhccCceEEEec-cCCHH------------H
Confidence 6543321 1222222 3479999999999 677888888752 2333322 22111 1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEE
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 236 (415)
..+++|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+.. .+.+
T Consensus 150 ~~~~~v~VvG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~~---~~~~------------ 193 (325)
T 2q7v_A 150 YKGKKVVVIGGGDAAVEEGMFLTK--------------------F-ADEVTVIHRRDTLRA---NKVA------------ 193 (325)
T ss_dssp GTTCEEEEECCSHHHHHHHHHHTT--------------------T-CSEEEEECSSSSCCS---CHHH------------
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEeCCCcCCc---chHH------------
Confidence 257999999999999999999986 3 468999998864310 0000
Q ss_pred EcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecC
Q 014990 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (415)
Q Consensus 237 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~ 316 (415)
.+.+. ...||+++++..+.++. . ++.+.++++.+.
T Consensus 194 -------------------------~~~l~------------~~~gv~i~~~~~v~~i~--~--~~~v~~v~~~~~---- 228 (325)
T 2q7v_A 194 -------------------------QARAF------------ANPKMKFIWDTAVEEIQ--G--ADSVSGVKLRNL---- 228 (325)
T ss_dssp -------------------------HHHHH------------TCTTEEEECSEEEEEEE--E--SSSEEEEEEEET----
T ss_pred -------------------------HHHHH------------hcCCceEecCCceEEEc--c--CCcEEEEEEEEC----
Confidence 01111 03589999999999987 4 556666766531
Q ss_pred CCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccc
Q 014990 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGI 396 (415)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~ 396 (415)
.+|+..+++||.||+|+|++|+. ++.... +.++++|++.+|++ ++|+.|||||+|||+..+...
T Consensus 229 ---------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~-~~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~ 292 (325)
T 2q7v_A 229 ---------KTGEVSELATDGVFIFIGHVPNT----AFVKDT-VSLRDDGYVDVRDE--IYTNIPMLFAAGDVSDYIYRQ 292 (325)
T ss_dssp ---------TTCCEEEEECSEEEECSCEEESC----GGGTTT-SCBCTTSCBCCBTT--TBCSSTTEEECSTTTCSSCCC
T ss_pred ---------CCCcEEEEEcCEEEEccCCCCCh----HHHhhh-cccCCCccEecCCC--CccCCCCEEEeecccCccHHH
Confidence 14555689999999999999975 343444 56677899999987 789999999999998764445
Q ss_pred hhhhhhhHHHHHhhccc
Q 014990 397 IATNLYCAEETVSSLSL 413 (415)
Q Consensus 397 ~~~a~~~g~~~a~~i~~ 413 (415)
...|+.||+.||.+|.+
T Consensus 293 ~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 293 LATSVGAGTRAAMMTER 309 (325)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66899999999999875
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=262.04 Aligned_cols=280 Identities=16% Similarity=0.205 Sum_probs=199.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC--C--CC--CCcchHHHHHHHHHHhhccCeEEEece
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--V--AP--DHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~--~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
++|+||||||||+++|..|++.+ .+|+|||+. .||.+... . .+ .+....++..++.+.+++.+++++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~li~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 77 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKG--IRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCC--CCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence 68999999999999999999998 999999863 55554321 1 01 122345677778888888899998885
Q ss_pred Eec-----------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 94 TLG-----------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 94 ~v~-----------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
.+. ..+..+++ ...||+||+|||+ .++.|++||.+ ...+++... .. .. ...
T Consensus 78 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~-~~---~~---------~~~ 143 (310)
T 1fl2_A 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA-KWRNMNVPGEDQYRTKGVTYCPH-CD---GP---------LFK 143 (310)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE-EECCCCCTTTTTTBTTTEESCHH-HH---GG---------GGB
T ss_pred EEEEEEecccCCceEEEEECCCCEEEeCEEEECcCC-CcCCCCCCChhhcccceeEEecc-Cc---Hh---------hcC
Confidence 431 23344444 3579999999999 57777888875 223433221 11 00 125
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|.+|+|+|..|.+ ...+|+++.|++.+. ..+.
T Consensus 144 ~~~v~VvG~G~~g~e~A~~l~~---------------------~g~~Vtlv~~~~~~~---~~~~--------------- 184 (310)
T 1fl2_A 144 GKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEMK---ADQV--------------- 184 (310)
T ss_dssp TCEEEEECCSHHHHHHHHHHHT---------------------TBSEEEEECSSSSCC---SCHH---------------
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------hCCEEEEEEeCcccC---ccHH---------------
Confidence 8999999999999999999986 346899999886431 0010
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
+.+.+. ...||+++++..+.++. . +++.+..+++.+.
T Consensus 185 ----------------------~~~~l~------------~~~gv~v~~~~~v~~i~--~-~~~~v~~v~~~~~------ 221 (310)
T 1fl2_A 185 ----------------------LQDKLR------------SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR------ 221 (310)
T ss_dssp ----------------------HHHHHH------------TCTTEEEESSEEEEEEE--E-SSSSEEEEEEEET------
T ss_pred ----------------------HHHHHh------------hCCCeEEecCCceEEEE--c-CCCcEEEEEEEEC------
Confidence 111111 02589999999999987 4 3456666766541
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchh
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~ 398 (415)
.+|+..++++|.||+|+|++|+. ++... .+.++++|++.+|+. ++|+.|||||+|||+..+.....
T Consensus 222 -------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~-~l~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~ 287 (310)
T 1fl2_A 222 -------VSGDIHNIELAGIFVQIGLLPNT----NWLEG-AVERNRMGEIIIDAK--CETNVKGVFAAGDCTTVPYKQII 287 (310)
T ss_dssp -------TTCCEEEEECSEEEECSCEEESC----GGGTT-TSCBCTTSCBCCCTT--CBCSSTTEEECSTTBSCSSCCHH
T ss_pred -------CCCcEEEEEcCEEEEeeCCccCc----hHHhc-cccccCCCcEEcCCC--CccCCCCEEEeecccCCcchhhh
Confidence 13555689999999999999975 23333 266777899999987 78999999999999976654555
Q ss_pred hhhhhHHHHHhhccc
Q 014990 399 TNLYCAEETVSSLSL 413 (415)
Q Consensus 399 ~a~~~g~~~a~~i~~ 413 (415)
.|+.||+.||.+|.+
T Consensus 288 ~A~~~g~~aa~~i~~ 302 (310)
T 1fl2_A 288 IATGEGAKASLSAFD 302 (310)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHH
Confidence 799999999999875
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=264.53 Aligned_cols=284 Identities=18% Similarity=0.221 Sum_probs=201.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC----CCCC--cchHHHHHHHHHHhhccCeEEEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV----APDH--PETKIVINQFSRVVQHERCSFFG 91 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 91 (415)
..++|+|||||+||+++|..|++.+ .+|+|||+. .+||.+.... .|.+ ....++...+.+.+++.+++++.
T Consensus 15 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 91 (319)
T 3cty_A 15 RDFDVVIVGAGAAGFSAAVYAARSG--FSVAILDKA-VAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG 91 (319)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-STTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeCC-CCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE
Confidence 3578999999999999999999999 999999994 4565543211 1221 22345667777778888888876
Q ss_pred ceEece-------EEEecccccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCCCCe
Q 014990 92 NVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (415)
Q Consensus 92 ~~~v~~-------~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 161 (415)
...... .+..+.....||+||+|||+ .++.|++||.+. .+++.... .... ...+++
T Consensus 92 ~~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~-~~~~~~i~g~~~~~~~~~~~~~~-~~~~------------~~~~~~ 157 (319)
T 3cty_A 92 VEVRSIKKTQGGFDIETNDDTYHAKYVIITTGT-THKHLGVKGESEYFGKGTSYCST-CDGY------------LFKGKR 157 (319)
T ss_dssp CCEEEEEEETTEEEEEESSSEEEEEEEEECCCE-EECCCCCBTTTTTBTTTEESCHH-HHGG------------GGBTSE
T ss_pred eeEEEEEEeCCEEEEEECCCEEEeCEEEECCCC-CcccCCCCChHHhCCceEEEEEe-cchh------------hcCCCe
Confidence 433221 23333334579999999998 677888888652 23333221 1111 125799
Q ss_pred EEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccc
Q 014990 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (415)
Q Consensus 162 V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (415)
|+|||+|.+|+|+|..|.+ ...+|+++.|++.+.. .+.
T Consensus 158 v~viG~G~~g~e~a~~l~~---------------------~g~~V~~i~~~~~~~~---~~~------------------ 195 (319)
T 3cty_A 158 VVTIGGGNSGAIAAISMSE---------------------YVKNVTIIEYMPKYMC---ENA------------------ 195 (319)
T ss_dssp EEEECCSHHHHHHHHHHTT---------------------TBSEEEEECSSSSCCS---CHH------------------
T ss_pred EEEECCCHHHHHHHHHHHh---------------------hCCcEEEEEcCCccCC---CHH------------------
Confidence 9999999999999999986 3468999998764310 000
Q ss_pred cCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCc
Q 014990 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (415)
Q Consensus 242 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~ 321 (415)
+.+.+. +.||+++++..+.++. . +++.+.++.+.+.
T Consensus 196 -------------------l~~~l~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~~--------- 231 (319)
T 3cty_A 196 -------------------YVQEIK-------------KRNIPYIMNAQVTEIV--G-DGKKVTGVKYKDR--------- 231 (319)
T ss_dssp -------------------HHHHHH-------------HTTCCEECSEEEEEEE--E-SSSSEEEEEEEET---------
T ss_pred -------------------HHHHHh-------------cCCcEEEcCCeEEEEe--c-CCceEEEEEEEEc---------
Confidence 111111 4579999999998887 4 3344666666431
Q ss_pred ceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhh
Q 014990 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401 (415)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~ 401 (415)
.+|+..++++|.||+|+|++|+. ++....++.++++|++.+|+. ++|+.|||||+|||+..+......|+
T Consensus 232 ----~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~gl~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~~A~ 301 (319)
T 3cty_A 232 ----TTGEEKLIETDGVFIYVGLIPQT----SFLKDSGVKLDERGYIVVDSR--QRTSVPGVYAAGDVTSGNFAQIASAV 301 (319)
T ss_dssp ----TTCCEEEECCSEEEECCCEEECC----GGGTTSCCCBCTTSCBCCCTT--CBCSSTTEEECSTTBTTCCCCHHHHH
T ss_pred ----CCCceEEEecCEEEEeeCCccCh----HHHhhccccccCCccEeCCCC--CccCCCCEEEeecccCcchhhHHHHH
Confidence 13555589999999999999975 355566788888899999987 78999999999999876545566899
Q ss_pred hhHHHHHhhcccc
Q 014990 402 YCAEETVSSLSLI 414 (415)
Q Consensus 402 ~~g~~~a~~i~~~ 414 (415)
.||+.||.+|.+.
T Consensus 302 ~~g~~aa~~i~~~ 314 (319)
T 3cty_A 302 GDGCKAALSLYSD 314 (319)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=261.87 Aligned_cols=281 Identities=21% Similarity=0.253 Sum_probs=204.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC----CCCCc--chHHHHHHHHHHhhccCeEEEec
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV----APDHP--ETKIVINQFSRVVQHERCSFFGN 92 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 92 (415)
.++|+|||||+||+++|..|++.+ .+|+|||+. +||.+.+.. .|.+. ...++..++.+.+++.+++++..
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYM--LKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLD 90 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEES
T ss_pred ccCEEEECccHHHHHHHHHHHHCC--CcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 579999999999999999999999 999999998 777665321 13322 34577788888888888888774
Q ss_pred eEece-------EEEecc-cccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCCCCe
Q 014990 93 VTLGS-------SVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (415)
Q Consensus 93 ~~v~~-------~v~~~~-~~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 161 (415)
..... .+...+ ....||+||+|||+ .++.|++||.+. .++.+. .+.... ...+++
T Consensus 91 ~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~~~i~g~~~~~~~~~~~~-~~~~~~------------~~~~~~ 156 (323)
T 3f8d_A 91 IVEKIENRGDEFVVKTKRKGEFKADSVILGIGV-KRRKLGVPGEQEFAGRGISYC-SVADAP------------LFKNRV 156 (323)
T ss_dssp CEEEEEEC--CEEEEESSSCEEEEEEEEECCCC-EECCCCCTTTTTTBTTTEESC-HHHHGG------------GGTTCE
T ss_pred EEEEEEecCCEEEEEECCCCEEEcCEEEECcCC-CCccCCCCchhhhcCCceEEe-ccCCHh------------HcCCCE
Confidence 33221 233334 23579999999999 588888998763 444432 222111 125799
Q ss_pred EEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccc
Q 014990 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (415)
Q Consensus 162 V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (415)
|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+.. .++
T Consensus 157 v~vvG~G~~~~e~a~~l~~--------------------~-g~~v~~~~~~~~~~~---~~~------------------ 194 (323)
T 3f8d_A 157 VAVIGGGDSALEGAEILSS--------------------Y-STKVYLIHRRDTFKA---QPI------------------ 194 (323)
T ss_dssp EEEECCSHHHHHHHHHHHH--------------------H-SSEEEEECSSSSCCS---CHH------------------
T ss_pred EEEECCCHHHHHHHHHHHH--------------------h-CCeEEEEEeCCCCCc---CHH------------------
Confidence 9999999999999999986 2 358999998865321 000
Q ss_pred cCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCc
Q 014990 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (415)
Q Consensus 242 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~ 321 (415)
..+.+. ...||+++++..+.++. . ++.+..+++.+.
T Consensus 195 -------------------~~~~~~------------~~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~--------- 230 (323)
T 3f8d_A 195 -------------------YVETVK------------KKPNVEFVLNSVVKEIK--G--DKVVKQVVVENL--------- 230 (323)
T ss_dssp -------------------HHHHHH------------TCTTEEEECSEEEEEEE--E--SSSEEEEEEEET---------
T ss_pred -------------------HHHHHH------------hCCCcEEEeCCEEEEEe--c--cCceeEEEEEEC---------
Confidence 011111 14489999999999987 4 466666766542
Q ss_pred ceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccC--Cccchhh
Q 014990 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG--PTGIIAT 399 (415)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~--~~~~~~~ 399 (415)
.+|+..++++|.||+|+|++|+. ++....++.++++|++.+|++ ++|+.|||||+|||+.. .......
T Consensus 231 ----~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~g~~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~~~~~~ 300 (323)
T 3f8d_A 231 ----KTGEIKELNVNGVFIEIGFDPPT----DFAKSNGIETDTNGYIKVDEW--MRTSVPGVFAAGDCTSAWLGFRQVIT 300 (323)
T ss_dssp ----TTCCEEEEECSEEEECCCEECCH----HHHHHTTCCBCTTSSBCCCTT--CBCSSTTEEECSTTBSTTTTCCCHHH
T ss_pred ----CCCceEEEEcCEEEEEECCCCCh----hHHhhcCeeecCCCcEecCCC--ceecCCCEEEcceecCCCCcccceee
Confidence 14565689999999999999974 355566778888999999986 88999999999999875 2445558
Q ss_pred hhhhHHHHHhhccc
Q 014990 400 NLYCAEETVSSLSL 413 (415)
Q Consensus 400 a~~~g~~~a~~i~~ 413 (415)
|+.||+.||.+|.+
T Consensus 301 A~~~g~~aa~~i~~ 314 (323)
T 3f8d_A 301 AVAQGAVAATSAYR 314 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHH
Confidence 99999999999865
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=260.84 Aligned_cols=282 Identities=17% Similarity=0.199 Sum_probs=199.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCccccC----CCCCC---cchHHHHHHHHHHhhccCeEEEe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFFG 91 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 91 (415)
++|+|||||+||+++|..|++.+ . +|+|||+. .+||.+.+. ..|.+ ....++..++.+.+++.+++++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ 78 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGG--VKNAVLFEKG-MPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM 78 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CSSEEEECSS-STTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC
T ss_pred ceEEEECccHHHHHHHHHHHHCC--CCcEEEEcCC-CCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE
Confidence 68999999999999999999998 8 99999995 456654321 11222 23456777788888888888876
Q ss_pred ceEece-------EEEeccc-ccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCCCC
Q 014990 92 NVTLGS-------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 92 ~~~v~~-------~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k 160 (415)
...... .+...+. ...||+||+|||+ .++.|++||.+. +.+++... .... ...++
T Consensus 79 ~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~-~~~~------------~~~~~ 144 (311)
T 2q0l_A 79 TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGG-SPKRTGIKGESEYWGKGVSTCAT-CDGF------------FYKNK 144 (311)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCE-EECCCCCBTHHHHBTTTEESCHH-HHGG------------GGTTS
T ss_pred EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCC-CCCCCCCCChhhccCCcEEEeec-CChh------------hcCCC
Confidence 433221 2323332 3579999999998 677888888641 33443321 2111 12579
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+. +. ++
T Consensus 145 ~v~VvG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~--~~-~~----------------- 183 (311)
T 2q0l_A 145 EVAVLGGGDTAVEEAIYLAN--------------------I-CKKVYLIHRRDGFR--CA-PI----------------- 183 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHT--------------------T-SSEEEEECSSSSCC--SC-HH-----------------
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEeeCCccC--CC-HH-----------------
Confidence 99999999999999999986 3 36899999886431 11 10
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
..+.+. ...||+++++..+.++. . +++.+..+++...
T Consensus 184 --------------------~~~~l~------------~~~gv~v~~~~~v~~i~--~-~~~~v~~v~~~~~-------- 220 (311)
T 2q0l_A 184 --------------------TLEHAK------------NNDKIEFLTPYVVEEIK--G-DASGVSSLSIKNT-------- 220 (311)
T ss_dssp --------------------HHHHHH------------TCTTEEEETTEEEEEEE--E-ETTEEEEEEEEET--------
T ss_pred --------------------HHHHHh------------hCCCeEEEeCCEEEEEE--C-CCCcEeEEEEEec--------
Confidence 011111 03589999999998886 4 2355555665431
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCC----CccccCCCceeeccCCCCCcccCCeeeeeccccCCccc
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHK----GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGI 396 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~----g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~ 396 (415)
.+|+..+++||.||+|+|++|+. ++.... ++.++++|++.+|++ ++|+.|||||+|||+..+...
T Consensus 221 -----~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~g~~~~l~~~~~g~i~vd~~--~~t~~~~vya~GD~~~~~~~~ 289 (311)
T 2q0l_A 221 -----ATNEKRELVVPGFFIFVGYDVNN----AVLKQEDNSMLCKCDEYGSIVVDFS--MKTNVQGLFAAGDIRIFAPKQ 289 (311)
T ss_dssp -----TTCCEEEEECSEEEECSCEEECC----GGGBCTTSCBSSCBCTTSCBCCCTT--CBCSSTTEEECSTTBTTCCCC
T ss_pred -----CCCceEEEecCEEEEEecCccCh----hhhhcccccceeEeccCCCEEeCCc--cccCCCCeEEcccccCcchHH
Confidence 13555589999999999999975 344444 377788899999986 889999999999998764445
Q ss_pred hhhhhhhHHHHHhhccc
Q 014990 397 IATNLYCAEETVSSLSL 413 (415)
Q Consensus 397 ~~~a~~~g~~~a~~i~~ 413 (415)
...|+.||+.||.+|.+
T Consensus 290 ~~~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 290 VVCAASDGATAALSVIS 306 (311)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 66899999999999875
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=262.66 Aligned_cols=282 Identities=18% Similarity=0.230 Sum_probs=205.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-------CCCCc--chHHHHHHHHHHhhccCeE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCS 88 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~ 88 (415)
..++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.+.. .+.+. ...++..++.+.+++.+++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (332)
T 3lzw_A 6 KVYDITIIGGGPVGLFTAFYGGMRQ--ASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQT 83 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCE
T ss_pred ccceEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCc
Confidence 3578999999999999999999998 99999999999887764211 13332 3567788888888888999
Q ss_pred EEeceEece---------EEEecccccccCEEEEccCCC--CCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCC
Q 014990 89 FFGNVTLGS---------SVSLSELRQLYHVVVLAYGAE--SDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSP 154 (415)
Q Consensus 89 ~~~~~~v~~---------~v~~~~~~~~~d~lvlAtG~~--~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~ 154 (415)
++.++.+.. .+...++...||+||+|||+. .|+.|++||.+. ..+++ .+.. .
T Consensus 84 ~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~--~~~~----~-------- 149 (332)
T 3lzw_A 84 ICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY--FVDD----L-------- 149 (332)
T ss_dssp EECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES--SCSC----G--------
T ss_pred EEccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE--ecCC----H--------
Confidence 887765522 344444446799999999983 477778888752 22222 1110 0
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCee
Q 014990 155 DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY 234 (415)
Q Consensus 155 ~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~ 234 (415)
....+++|+|||+|.+|+|+|..|.+ ...+|+++.|++.+.
T Consensus 150 ~~~~~~~v~vvG~g~~~~e~a~~l~~---------------------~~~~v~~~~~~~~~~------------------ 190 (332)
T 3lzw_A 150 QKFAGRRVAILGGGDSAVDWALMLEP---------------------IAKEVSIIHRRDKFR------------------ 190 (332)
T ss_dssp GGGBTCEEEEECSSHHHHHHHHHHTT---------------------TBSEEEEECSSSSCS------------------
T ss_pred HHcCCCEEEEECCCHhHHHHHHHHHh---------------------hCCeEEEEEecCcCC------------------
Confidence 01158999999999999999999986 345899999886431
Q ss_pred EEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee
Q 014990 235 VHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314 (415)
Q Consensus 235 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~ 314 (415)
..... .+.+. +.||+++++..+.++. . ++.+..+++.+.
T Consensus 191 ------------~~~~~----------~~~l~-------------~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~-- 229 (332)
T 3lzw_A 191 ------------AHEHS----------VENLH-------------ASKVNVLTPFVPAELI--G--EDKIEQLVLEEV-- 229 (332)
T ss_dssp ------------SCHHH----------HHHHH-------------HSSCEEETTEEEEEEE--C--SSSCCEEEEEET--
T ss_pred ------------ccHHH----------HHHHh-------------cCCeEEEeCceeeEEe--c--CCceEEEEEEec--
Confidence 10000 01111 5689999999999987 4 333556766542
Q ss_pred cCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc--C
Q 014990 315 KGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR--G 392 (415)
Q Consensus 315 ~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~--~ 392 (415)
.+++++++++|.||+|+|++|+. ++....++.. ++|++.+|++ ++|+.|||||+|||+. +
T Consensus 230 -----------~~g~~~~~~~D~vv~a~G~~p~~----~~~~~~~~~~-~~g~i~vd~~--~~t~~~~vya~GD~~~~~~ 291 (332)
T 3lzw_A 230 -----------KGDRKEILEIDDLIVNYGFVSSL----GPIKNWGLDI-EKNSIVVKST--METNIEGFFAAGDICTYEG 291 (332)
T ss_dssp -----------TSCCEEEEECSEEEECCCEECCC----GGGGGSSCCE-ETTEEECCTT--SBCSSTTEEECGGGEECTT
T ss_pred -----------CCCceEEEECCEEEEeeccCCCc----hHHhhcCccc-cCCeEEeCCC--CceecCCEEEccceecCCC
Confidence 14566789999999999999965 3555667766 6799999986 8899999999999984 2
Q ss_pred CccchhhhhhhHHHHHhhccc
Q 014990 393 PTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 393 ~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.......|+.||+.||.+|.+
T Consensus 292 ~~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 292 KVNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred CcceEeeehhhHHHHHHHHHH
Confidence 344455899999999999865
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=260.47 Aligned_cols=287 Identities=18% Similarity=0.253 Sum_probs=202.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC----CCCCCCccccC----CCCCC---cchHHHHHHHHHHhhccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR----LPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHER 86 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~----~~~~gg~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~ 86 (415)
..++|+|||||+||+++|..|++.+ .+|+|||+ ....|+.+.+. ..|.+ ....++...+.+.++..+
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFG 84 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCC
Confidence 3578999999999999999999998 99999998 45566654332 11222 234466777777788888
Q ss_pred eEEEeceEece-------EEEecccccccCEEEEccCCCCCCCCCCCCCCC-------CCeeechhhHHHhcCCCCCCCC
Q 014990 87 CSFFGNVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGEDL-------IGVHSAREFVWWYNGHPDGKNL 152 (415)
Q Consensus 87 ~~~~~~~~v~~-------~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~-------~~v~~~~~~~~~~~~~~~~~~~ 152 (415)
++++.+..... .+..+.....||+||+|||+ .++.|++||.+. ..+++. .... ...
T Consensus 85 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~-~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~---~~~----- 154 (333)
T 1vdc_A 85 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGA-VAKRLSFVGSGEVLGGFWNRGISAC-AVCD---GAA----- 154 (333)
T ss_dssp CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCE-EECCCCCBTCSSSSSCCBTTTEESC-HHHH---TTS-----
T ss_pred CEEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCC-CcCCCCCCCccccccccccCcEEEe-ccCc---cch-----
Confidence 99887763221 23332234579999999999 577778888753 222222 1111 110
Q ss_pred CCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCC
Q 014990 153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKN 232 (415)
Q Consensus 153 ~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~ 232 (415)
....+++|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+.. .+.+
T Consensus 155 --~~~~~~~v~VvG~G~~g~e~A~~l~~--------------------~-g~~V~lv~~~~~~~~---~~~~-------- 200 (333)
T 1vdc_A 155 --PIFRNKPLAVIGGGDSAMEEANFLTK--------------------Y-GSKVYIIHRRDAFRA---SKIM-------- 200 (333)
T ss_dssp --GGGTTSEEEEECCSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCS---CHHH--------
T ss_pred --hhcCCCeEEEECCChHHHHHHHHHHh--------------------c-CCeEEEEecCCcCCc---cHHH--------
Confidence 01368999999999999999999986 3 358999998864310 0000
Q ss_pred eeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCC--CeeeEEEe
Q 014990 233 LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVSGVHFE 310 (415)
Q Consensus 233 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~--~v~~v~~~ 310 (415)
. .+++ .+.||+++++..+.++. . +++ .+..+.+.
T Consensus 201 -------------------------~---~~~~-------------~~~gv~i~~~~~v~~i~--~-~~~~~~v~~v~~~ 236 (333)
T 1vdc_A 201 -------------------------Q---QRAL-------------SNPKIDVIWNSSVVEAY--G-DGERDVLGGLKVK 236 (333)
T ss_dssp -------------------------H---HHHH-------------TCTTEEEECSEEEEEEE--E-SSSSSSEEEEEEE
T ss_pred -------------------------H---HHHH-------------hCCCeeEecCCceEEEe--C-CCCccceeeEEEE
Confidence 0 0111 15689999999999987 4 222 56667665
Q ss_pred eeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccc
Q 014990 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (415)
Q Consensus 311 ~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~ 390 (415)
+. .+|+.++++||.||||+|++|+. ++.. .++.++++|++.+|+.+ ++|+.|||||+|||+
T Consensus 237 ~~-------------~~g~~~~i~~D~vi~a~G~~p~~----~~~~-~~l~~~~~G~i~vd~~~-~~t~~~~vya~GD~~ 297 (333)
T 1vdc_A 237 NV-------------VTGDVSDLKVSGLFFAIGHEPAT----KFLD-GGVELDSDGYVVTKPGT-TQTSVPGVFAAGDVQ 297 (333)
T ss_dssp ET-------------TTCCEEEEECSEEEECSCEEESC----GGGT-TSSCBCTTSCBCCCTTS-CBCSSTTEEECGGGG
T ss_pred ec-------------CCCceEEEecCEEEEEeCCccch----HHhh-ccccccCCCCEEechhh-cccCCCCEEEeeecc
Confidence 31 13555689999999999999976 3333 35677778999999875 789999999999998
Q ss_pred cCCccchhhhhhhHHHHHhhccc
Q 014990 391 RGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 391 ~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
..+......|+.||+.||.+|.+
T Consensus 298 ~~~~~~~~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 298 DKKYRQAITAAGTGCMAALDAEH 320 (333)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHhHHHHHHHHHH
Confidence 76544555799999999999875
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=263.37 Aligned_cols=285 Identities=20% Similarity=0.196 Sum_probs=202.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCC---cchHHHHHHHHHHhhccCeEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSF 89 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~ 89 (415)
+..++|+|||||+||+++|..|++.+ .+|+|||+. .+||.+.+. ..|.+ ....++..++.+.+++.++++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ 88 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQ--LAPLVFEGT-SFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADL 88 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTT--CCCEEECCS-SCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 45689999999999999999999998 999999975 566654432 11222 234566777777788888998
Q ss_pred EeceEece------EE-Eeccc-ccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 90 FGNVTLGS------SV-SLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 90 ~~~~~v~~------~v-~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
+.+..... .+ ...+. ...||+||+|||+ .++.|++||.+. ..+++... .... +..
T Consensus 89 ~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~-~~~~~~i~g~~~~~~~~~~~~~~-~~~~------------~~~ 154 (335)
T 2a87_A 89 RMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGA-AARYLQVPGEQELLGRGVSSCAT-CDGF------------FFR 154 (335)
T ss_dssp ECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCE-EECCCCCTHHHHTBTTTEESCHH-HHGG------------GGT
T ss_pred EEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCC-CccCCCCCchHhccCCceEEeec-cchh------------hcC
Confidence 88764322 13 33333 3579999999999 677778887541 23333221 1111 125
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+..
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~--------------------~-g~~V~l~~~~~~~~~--------------------- 192 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTR--------------------F-ARSVTLVHRRDEFRA--------------------- 192 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTT--------------------T-CSEEEEECSSSSCSS---------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHH--------------------h-CCeEEEEEcCCcCCc---------------------
Confidence 8999999999999999999986 3 468999998864310
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
. ..+.. +++. +.||+++++..+.++. . ++.+..+.+.+.
T Consensus 193 --------~-------~~~~~---~~~~-------------~~gV~v~~~~~v~~i~--~--~~~~~~v~~~~~------ 231 (335)
T 2a87_A 193 --------S-------KIMLD---RARN-------------NDKIRFLTNHTVVAVD--G--DTTVTGLRVRDT------ 231 (335)
T ss_dssp --------C-------TTHHH---HHHH-------------CTTEEEECSEEEEEEE--C--SSSCCEEEEEEE------
T ss_pred --------c-------HHHHH---HHhc-------------cCCcEEEeCceeEEEe--c--CCcEeEEEEEEc------
Confidence 0 00000 1111 5689999999999987 4 445556666532
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchh
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~ 398 (415)
.+|+.++++||.||||+|++|+. ++.. .++.++++|++.+|+.+ ++|+.|||||+|||+..+.....
T Consensus 232 -------~~g~~~~i~~D~vi~a~G~~p~~----~~~~-~~l~~~~~G~i~vd~~~-~~t~~~~iya~GD~~~~~~~~~~ 298 (335)
T 2a87_A 232 -------NTGAETTLPVTGVFVAIGHEPRS----GLVR-EAIDVDPDGYVLVQGRT-TSTSLPGVFAAGDLVDRTYRQAV 298 (335)
T ss_dssp -------TTSCCEEECCSCEEECSCEEECC----TTTB-TTBCBCTTSCBCCSTTS-SBCSSTTEEECGGGTCCSCCCHH
T ss_pred -------CCCceEEeecCEEEEccCCccCh----hHhh-cccccCCCccEEeCCCC-CccCCCCEEEeeecCCccHHHHH
Confidence 13445689999999999999975 2323 46777888999999865 78999999999999875444455
Q ss_pred hhhhhHHHHHhhcccc
Q 014990 399 TNLYCAEETVSSLSLI 414 (415)
Q Consensus 399 ~a~~~g~~~a~~i~~~ 414 (415)
.|+.+|+.||.+|.+.
T Consensus 299 ~A~~~g~~aA~~i~~~ 314 (335)
T 2a87_A 299 TAAGSGCAAAIDAERW 314 (335)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 7999999999998753
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=259.93 Aligned_cols=288 Identities=17% Similarity=0.198 Sum_probs=201.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCC---cchHHHHHHHHHHhhccCeEEE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
..++|+|||||+||+++|..|++.+ .+|+|||+. .+||.+.+. ..|.+ ....++..++.+.++..+++++
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (320)
T 1trb_A 4 KHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII 80 (320)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCS-STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEccC-CCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4578999999999999999999998 999999975 566654332 11222 2345667777778888889988
Q ss_pred eceEeceE-----EE-ecc-cccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCCCC
Q 014990 91 GNVTLGSS-----VS-LSE-LRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 91 ~~~~v~~~-----v~-~~~-~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k 160 (415)
.+.....+ ++ ..+ ....||+||+|||+ .+..|++||.+ ...+++... .... +..++
T Consensus 81 ~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~-~~~~~~~~g~~~~~~~~~~~~~~-~~~~------------~~~~~ 146 (320)
T 1trb_A 81 FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACAT-SDGF------------FYRNQ 146 (320)
T ss_dssp CCCEEEEECSSSSEEEEESSCEEEEEEEEECCCE-EECCCCCHHHHHTBTTTEESCHH-HHGG------------GGTTS
T ss_pred EeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCC-CcCCCCCCChHHhCCceeEeccc-CCcc------------ccCCC
Confidence 87643221 11 222 23579999999999 57777888754 123333221 1111 12579
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+.. .
T Consensus 147 ~v~ViG~G~~g~e~A~~l~~--------------------~-g~~Vtlv~~~~~~~~---~------------------- 183 (320)
T 1trb_A 147 KVAVIGGGNTAVEEALYLSN--------------------I-ASEVHLIHRRDGFRA---E------------------- 183 (320)
T ss_dssp EEEEECSSHHHHHHHHHHTT--------------------T-SSEEEEECSSSSCCC---C-------------------
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------c-CCeEEEEEeCCcccc---C-------------------
Confidence 99999999999999999986 3 358999998864310 0
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
+.+..++.+.+. +.||+++++..+.++. . +++.+.++++.+..
T Consensus 184 --------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~~~------- 226 (320)
T 1trb_A 184 --------------KILIKRLMDKVE-------------NGNIILHTNRTLEEVT--G-DQMGVTGVRLRDTQ------- 226 (320)
T ss_dssp --------------HHHHHHHHHHHH-------------TSSEEEECSCEEEEEE--E-CSSSEEEEEEECCT-------
T ss_pred --------------HHHHHHHHHhcc-------------cCCeEEEcCceeEEEE--c-CCCceEEEEEEecc-------
Confidence 111122222222 6789999999999987 4 34466667664310
Q ss_pred cceeccC-CceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC---CCCcccCCeeeeeccccCCccc
Q 014990 321 KQYAVGT-GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGPTGI 396 (415)
Q Consensus 321 ~~~~~~~-g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~---~~~t~~p~vfaiGD~~~~~~~~ 396 (415)
+ |+.++++||.||+|+|++|+. ++.. .++.++ +|++.+|+.+ .++|++|||||+|||+..+...
T Consensus 227 ------~~g~~~~i~~D~vv~a~G~~p~~----~~~~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~ 294 (320)
T 1trb_A 227 ------NSDNIESLDVAGLFVAIGHSPNT----AIFE-GQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ 294 (320)
T ss_dssp ------TCCCCEEEECSEEEECSCEEESC----GGGT-TTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCC
T ss_pred ------CCCceEEEEcCEEEEEeCCCCCh----HHhc-cccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchh
Confidence 2 445689999999999999975 3333 356677 8999999862 1389999999999998765445
Q ss_pred hhhhhhhHHHHHhhcccc
Q 014990 397 IATNLYCAEETVSSLSLI 414 (415)
Q Consensus 397 ~~~a~~~g~~~a~~i~~~ 414 (415)
...|+.||+.||.+|.+.
T Consensus 295 ~~~A~~~g~~aa~~i~~~ 312 (320)
T 1trb_A 295 AITSAGTGCMAALDAERY 312 (320)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHH
Confidence 557999999999998753
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=273.32 Aligned_cols=289 Identities=13% Similarity=0.158 Sum_probs=194.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc---cCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR---SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++|+|||||+||+++|.+|++.+++.+|+|||+++.+|.... +..........++.....+.+.+.+++++.+..+.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 689999999999999999999955599999999987762211 00101111111221113344556788887776552
Q ss_pred e------EEEe----cccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEc
Q 014990 97 S------SVSL----SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (415)
Q Consensus 97 ~------~v~~----~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG 166 (415)
. .+.+ +.....||+||+|||+ .|+.|++||.+.+++++...+..... .......+++++|||
T Consensus 83 ~id~~~~~v~v~~~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~~~v~~~~~~~~~~~-------~~~~~~~~~~vvViG 154 (452)
T 3oc4_A 83 AMDVENQLIAWTRKEEQQWYSYDKLILATGA-SQFSTQIRGSQTEKLLKYKFLSGALA-------AVPLLENSQTVAVIG 154 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEECSEEEECCCC-CBCCCCCBTTTCTTEEEGGGCC-----------CCHHHHTCSEEEEEC
T ss_pred EEECCCCEEEEEecCceEEEEcCEEEECCCc-ccCCCCCCCCCCCCEEEeCCHHHHHH-------HHHHHhcCCEEEEEC
Confidence 1 2322 1223579999999999 78888999998777776643321100 000112579999999
Q ss_pred CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCC
Q 014990 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSP 246 (415)
Q Consensus 167 ~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p 246 (415)
+|.+|+|+|..+.+ .+ .+|+++.|++.+.....++++
T Consensus 155 gG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~d~~~---------------------- 191 (452)
T 3oc4_A 155 AGPIGMEAIDFLVK--------------------MK-KTVHVFESLENLLPKYFDKEM---------------------- 191 (452)
T ss_dssp CSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTCCHHH----------------------
T ss_pred CCHHHHHHHHHHHh--------------------CC-CeEEEEEccCccccccCCHHH----------------------
Confidence 99999999999986 34 589999998765332222222
Q ss_pred CcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceecc
Q 014990 247 TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG 326 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~ 326 (415)
...+.+.+. +.||+++++..+.++. . .++.+ .+.+
T Consensus 192 -----------~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v-~v~~----------------- 226 (452)
T 3oc4_A 192 -----------VAEVQKSLE-------------KQAVIFHFEETVLGIE--E-TANGI-VLET----------------- 226 (452)
T ss_dssp -----------HHHHHHHHH-------------TTTEEEEETCCEEEEE--E-CSSCE-EEEE-----------------
T ss_pred -----------HHHHHHHHH-------------HcCCEEEeCCEEEEEE--c-cCCeE-EEEE-----------------
Confidence 111222222 6789999999999886 3 34444 3332
Q ss_pred CCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc---------cch
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GII 397 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---------~~~ 397 (415)
.+. +++||.||+|+|++|+. ++... .+.++++|.+.+|++ ++|+.|||||+|||+..+. ...
T Consensus 227 ~~g--~i~aD~Vv~A~G~~p~~----~~l~~-~~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~ 297 (452)
T 3oc4_A 227 SEQ--EISCDSGIFALNLHPQL----AYLDK-KIQRNLDQTIAVDAY--LQTSVPNVFAIGDCISVMNEPVAETFYAPLV 297 (452)
T ss_dssp SSC--EEEESEEEECSCCBCCC----SSCCT-TSCBCTTSCBCCCTT--CBCSSTTEEECGGGBCEEEGGGTEEECCCCH
T ss_pred CCC--EEEeCEEEECcCCCCCh----HHHHh-hhccCCCCCEEECcC--ccCCCCCEEEEEeeEEeccccCCceeecchH
Confidence 122 79999999999999976 23333 367788899999986 8999999999999986431 255
Q ss_pred hhhhhhHHHHHhhccc
Q 014990 398 ATNLYCAEETVSSLSL 413 (415)
Q Consensus 398 ~~a~~~g~~~a~~i~~ 413 (415)
..|+.||+.||.+|..
T Consensus 298 ~~A~~~g~~aa~~i~g 313 (452)
T 3oc4_A 298 NNAVRTGLVVANNLEE 313 (452)
T ss_dssp HHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5799999999999874
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=259.11 Aligned_cols=286 Identities=20% Similarity=0.223 Sum_probs=201.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-------CCCCc--chHHHHHHHHHHhhccCeE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCS 88 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~ 88 (415)
..++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.... .+.++ ...++..++.+.+...++.
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPV 81 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCE
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 4579999999999999999999998 99999999988887653211 12222 3456777777888887888
Q ss_pred EEeceEece--------EEEeccc-ccccCEEEEccCCC--CCCCCCCCCCCC-C--CeeechhhHHHhcCCCCCCCCCC
Q 014990 89 FFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE--SDRALGIPGEDL-I--GVHSAREFVWWYNGHPDGKNLSP 154 (415)
Q Consensus 89 ~~~~~~v~~--------~v~~~~~-~~~~d~lvlAtG~~--~~~~~~i~g~~~-~--~v~~~~~~~~~~~~~~~~~~~~~ 154 (415)
++.++.+.. .+...+. ...||+||+|||+. .|..|+++|.+. . .+++.. ...
T Consensus 82 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~------~~~-------- 147 (335)
T 2zbw_A 82 YSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAV------KSK-------- 147 (335)
T ss_dssp EEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSC------SCG--------
T ss_pred EEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEec------Cch--------
Confidence 877765422 2333333 35799999999984 367777888652 1 222211 000
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCee
Q 014990 155 DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY 234 (415)
Q Consensus 155 ~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~ 234 (415)
....+++|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+.
T Consensus 148 ~~~~~~~v~viG~G~~g~e~a~~l~~--------------------~-g~~V~~v~~~~~~~------------------ 188 (335)
T 2zbw_A 148 AEFQGKRVLIVGGGDSAVDWALNLLD--------------------T-ARRITLIHRRPQFR------------------ 188 (335)
T ss_dssp GGGTTCEEEEECSSHHHHHHHHHTTT--------------------T-SSEEEEECSSSSCC------------------
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHh--------------------h-CCEEEEEEcCCccC------------------
Confidence 01157999999999999999999986 2 35899999986431
Q ss_pred EEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee
Q 014990 235 VHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314 (415)
Q Consensus 235 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~ 314 (415)
+. . ....++.+.+. +.||+++++..+.++. . ++.+..+++...
T Consensus 189 -----------~~-~------~~~~~l~~~l~-------------~~gv~v~~~~~v~~i~--~--~~~~~~v~~~~~-- 231 (335)
T 2zbw_A 189 -----------AH-E------ASVKELMKAHE-------------EGRLEVLTPYELRRVE--G--DERVRWAVVFHN-- 231 (335)
T ss_dssp -----------SC-H------HHHHHHHHHHH-------------TTSSEEETTEEEEEEE--E--SSSEEEEEEEET--
T ss_pred -----------cc-H------HHHHHHHhccc-------------cCCeEEecCCcceeEc--c--CCCeeEEEEEEC--
Confidence 10 0 01111222221 5689999999999987 3 455556666431
Q ss_pred cCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC-
Q 014990 315 KGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP- 393 (415)
Q Consensus 315 ~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~- 393 (415)
.+|+.+++++|.||+|+|++|+. ++....++..+ +|++.+|++ ++|+.|||||+|||+..+
T Consensus 232 -----------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~~~~~~-~g~i~vd~~--~~t~~~~vya~GD~~~~~~ 293 (335)
T 2zbw_A 232 -----------QTQEELALEVDAVLILAGYITKL----GPLANWGLALE-KNKIKVDTT--MATSIPGVYACGDIVTYPG 293 (335)
T ss_dssp -----------TTCCEEEEECSEEEECCCEEEEC----GGGGGSCCCEE-TTEEECCTT--CBCSSTTEEECSTTEECTT
T ss_pred -----------CCCceEEEecCEEEEeecCCCCc----hHhhhcceecc-CCeeeeCCC--CCCCCCCEEEeccccccCc
Confidence 03445689999999999999975 34455566666 689999986 889999999999998533
Q ss_pred -ccchhhhhhhHHHHHhhccc
Q 014990 394 -TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 -~~~~~~a~~~g~~~a~~i~~ 413 (415)
......|+.||+.+|.+|..
T Consensus 294 ~~~~~~~A~~~g~~aa~~i~~ 314 (335)
T 2zbw_A 294 KLPLIVLGFGEAAIAANHAAA 314 (335)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHH
Confidence 34555799999999999864
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=273.08 Aligned_cols=291 Identities=18% Similarity=0.164 Sum_probs=201.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc---cccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
+..++|||||||+||+++|..|++.++..+|+|||+++.++.. +......+.....++.....+.+...+++++.++
T Consensus 7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 86 (415)
T 3lxd_A 7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGA 86 (415)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETC
T ss_pred CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCC
Confidence 3568999999999999999999999954569999998765432 1111112221222222233445566789998885
Q ss_pred Eec------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCC-CCeEE
Q 014990 94 TLG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKS-TDTAV 163 (415)
Q Consensus 94 ~v~------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~-~k~V~ 163 (415)
.+. +.+...++ ...||+||+|||+ .|+.|++||.+.+++++...... .+... +.. +++|+
T Consensus 87 ~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~-~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~---------~~~~~~~vv 156 (415)
T 3lxd_A 87 EVVSLDPAAHTVKLGDGSAIEYGKLIWATGG-DPRRLSCVGADLAGVHAVRTKEDADRLMAE---------LDAGAKNAV 156 (415)
T ss_dssp CEEEEETTTTEEEETTSCEEEEEEEEECCCE-ECCCCBTTSSCCBTEECCCSHHHHHHHHHH---------HHTTCCEEE
T ss_pred EEEEEECCCCEEEECCCCEEEeeEEEEccCC-ccCCCCCCCccccCEEEEcCHHHHHHHHHH---------hhhcCCeEE
Confidence 542 24555444 3589999999998 78888999988777765432211 11110 113 89999
Q ss_pred EEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccC
Q 014990 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (415)
Q Consensus 164 VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (415)
|||+|.+|+|+|..+.+ .+ .+|+++.+.+.+......+++
T Consensus 157 ViGgG~~g~e~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~~~~~~------------------- 196 (415)
T 3lxd_A 157 VIGGGYIGLEAAAVLTK--------------------FG-VNVTLLEALPRVLARVAGEAL------------------- 196 (415)
T ss_dssp EECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTSCHHH-------------------
T ss_pred EECCCHHHHHHHHHHHh--------------------cC-CeEEEEecCCchhhhhcCHHH-------------------
Confidence 99999999999999986 34 589999998754322222222
Q ss_pred CCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcce
Q 014990 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (415)
Q Consensus 244 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~ 323 (415)
...+.+.+. +.||+++++..+.++. . +++.+..+++.+
T Consensus 197 --------------~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~~v~l~d------------ 234 (415)
T 3lxd_A 197 --------------SEFYQAEHR-------------AHGVDLRTGAAMDCIE--G-DGTKVTGVRMQD------------ 234 (415)
T ss_dssp --------------HHHHHHHHH-------------HTTCEEEETCCEEEEE--E-SSSBEEEEEESS------------
T ss_pred --------------HHHHHHHHH-------------hCCCEEEECCEEEEEE--e-cCCcEEEEEeCC------------
Confidence 111222222 5689999999999987 4 355665665432
Q ss_pred eccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccc-------
Q 014990 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGI------- 396 (415)
Q Consensus 324 ~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~------- 396 (415)
| ++++||.||+|+|++|+. ++....|+..+ +| +.+|++ ++|+.|||||+|||+..+...
T Consensus 235 ----G--~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--~~t~~~~iyA~GD~a~~~~~~~~g~~~~ 300 (415)
T 3lxd_A 235 ----G--SVIPADIVIVGIGIVPCV----GALISAGASGG-NG-VDVDEF--CRTSLTDVYAIGDCAAHANDFADGAVIR 300 (415)
T ss_dssp ----S--CEEECSEEEECSCCEESC----HHHHHTTCCCS-SS-EECCTT--CBCSSTTEEECGGGEEEECGGGTTCEEC
T ss_pred ----C--CEEEcCEEEECCCCccCh----HHHHhCCCCcC-CC-EEECCC--CCcCCCCEEEEEeeeeecCcccCCccee
Confidence 2 279999999999999975 34455666666 46 888886 789999999999998655422
Q ss_pred ---hhhhhhhHHHHHhhccc
Q 014990 397 ---IATNLYCAEETVSSLSL 413 (415)
Q Consensus 397 ---~~~a~~~g~~~a~~i~~ 413 (415)
...|+.||+.||.+|..
T Consensus 301 ~~~~~~A~~qg~~aa~~i~g 320 (415)
T 3lxd_A 301 LESVQNANDMATAAAKDICG 320 (415)
T ss_dssp CCSHHHHHHHHHHHHHHHTT
T ss_pred echHHHHHHHHHHHHHHhcC
Confidence 35799999999999874
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=274.06 Aligned_cols=280 Identities=15% Similarity=0.214 Sum_probs=187.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc---ccc---CCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRS---GVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
+|||||||||||++||.+|++.+++.+|+|||+++..+.. +.+ +..... ...+.....+..++.+++++.+.
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~ 78 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDR--RYALAYTPEKFYDRKQITVKTYH 78 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCG--GGTBCCCHHHHHHHHCCEEEETE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccch--hhhhhcCHHHHHHhcCCEEEeCC
Confidence 4799999999999999999999977899999998764321 111 110110 00000111233455678887776
Q ss_pred Eece------EEEecc------cccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 94 TLGS------SVSLSE------LRQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 94 ~v~~------~v~~~~------~~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
.+.. .++... ....||+||||||+ .|+.|++||... ..+.++......+.. ..
T Consensus 79 ~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs-~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~-----------~~ 146 (437)
T 4eqs_A 79 EVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGA-SANSLGFESDITFTLRNLEDTDAIDQFIKA-----------NQ 146 (437)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCE-EECCCCCCCTTEECCSSHHHHHHHHHHHHH-----------HT
T ss_pred eEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCC-ccccccccCceEEeeccHHHHHHHHHhhhc-----------cC
Confidence 5421 222211 12479999999999 678888887531 111122111111111 14
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|.+|+|+|..+.+ .+ .+|+++.|++.+...+
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~ll~~~------------------- 186 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYE--------------------RG-LHPTLIHRSDKINKLM------------------- 186 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--------------------HT-CEEEEEESSSCCSTTS-------------------
T ss_pred CcEEEEECCccchhhhHHHHHh--------------------cC-Ccceeeeeeccccccc-------------------
Confidence 7899999999999999999986 33 5899999987653211
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
..++ ...+.+.+. ++||+++++..+.++. . + .+.++
T Consensus 187 ----------d~~~-----~~~~~~~l~-------------~~gV~i~~~~~v~~~~--~--~----~v~~~-------- 222 (437)
T 4eqs_A 187 ----------DADM-----NQPILDELD-------------KREIPYRLNEEINAIN--G--N----EITFK-------- 222 (437)
T ss_dssp ----------CGGG-----GHHHHHHHH-------------HTTCCEEESCCEEEEE--T--T----EEEET--------
T ss_pred ----------cchh-----HHHHHHHhh-------------ccceEEEeccEEEEec--C--C----eeeec--------
Confidence 1111 122223332 5689999988877764 2 2 23321
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc----
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---- 394 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---- 394 (415)
+| ++++||.||||+|++|+. .+.+..|+.++++|++.+|++ ++|++|||||+|||+..+.
T Consensus 223 --------~g--~~~~~D~vl~a~G~~Pn~----~~~~~~gl~~~~~G~I~vd~~--~~Ts~p~IyA~GDva~~~~~~~~ 286 (437)
T 4eqs_A 223 --------SG--KVEHYDMIIEGVGTHPNS----KFIESSNIKLDRKGFIPVNDK--FETNVPNIYAIGDIATSHYRHVD 286 (437)
T ss_dssp --------TS--CEEECSEEEECCCEEESC----GGGTTSSCCCCTTSCEECCTT--CBCSSTTEEECGGGEEEEBSSSS
T ss_pred --------CC--eEEeeeeEEEEeceecCc----HHHHhhhhhhccCCcEecCCC--ccCCCCCEEEEEEccCcccccCC
Confidence 22 378999999999999976 455777899999999999987 8999999999999985432
Q ss_pred -----cchhhhhhhHHHHHhhccc
Q 014990 395 -----GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 395 -----~~~~~a~~~g~~~a~~i~~ 413 (415)
.....|..||+.+|+||..
T Consensus 287 ~~~~~~~a~~A~~~g~~~a~ni~g 310 (437)
T 4eqs_A 287 LPASVPLAWGAHRAASIVAEQIAG 310 (437)
T ss_dssp SEECCCSHHHHHHHHHHHHHHHHS
T ss_pred ccccchhHHHHHHHHHHHHHHHcC
Confidence 2345789999999999864
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.98 E-value=5e-32 Score=258.95 Aligned_cols=277 Identities=12% Similarity=0.115 Sum_probs=181.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCC-----cchHHHHHHHHHHhhcc-CeEE
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----PETKIVINQFSRVVQHE-RCSF 89 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~ 89 (415)
.++.+||+||||||||++||.+|+|.+ .+|+|||++.. ||.+.... |++ ..+.++.....+.+.++ .+.+
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g--~~v~lie~~~~-gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRAR--KQIALFDNNTN-RNRVTQNS-HGFITRDGIKPEEFKEIGLNEVMKYPSVHY 78 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSCC-GGGGSSCB-CCSTTCTTBCHHHHHHHHHHHHTTSTTEEE
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC-CCeeeeec-CCccCCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 467899999999999999999999999 99999998754 44332111 211 23445555555555444 4555
Q ss_pred EeceEec--------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCC
Q 014990 90 FGNVTLG--------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLK 157 (415)
Q Consensus 90 ~~~~~v~--------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 157 (415)
.....+. ..+...+. ...||+||||||+ .|+.|++||.+ ..++++...... . ..
T Consensus 79 ~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs-~p~~p~i~G~~~~~~~~v~~~~~~~~----~---------~~ 144 (304)
T 4fk1_A 79 YEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGM-QEEFPSIPNVREYYGKSLFSCPYCDG----W---------EL 144 (304)
T ss_dssp EECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCC-EEECCSCTTHHHHBTTTEESCHHHHS----G---------GG
T ss_pred EeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCC-ccccccccCccccccceeeeccccch----h---------Hh
Confidence 5544431 12333333 3479999999999 78999999965 234444332211 1 11
Q ss_pred CCCeEEEEcCChh-HHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEE
Q 014990 158 STDTAVILGQGNV-ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (415)
Q Consensus 158 ~~k~V~VVG~G~s-g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 236 (415)
.+++++|||+|.. ++|+|..+.+ ...+|+++.|..... . .+
T Consensus 145 ~~~~~~VIggG~~~~~e~a~~~~~---------------------~~~~v~i~~~~~~~~----~-~~------------ 186 (304)
T 4fk1_A 145 KDQPLIIISENEDHTLHMTKLVYN---------------------WSTDLVIATNGNELS----Q-TI------------ 186 (304)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHTT---------------------TCSCEEEECSSCCCC----H-HH------------
T ss_pred cCCceeeecCCCchhhhHHHHHHh---------------------CCceEEEEeccccch----h-hh------------
Confidence 5778899988876 4677776664 446888887765321 1 11
Q ss_pred EcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecC
Q 014990 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (415)
Q Consensus 237 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~ 316 (415)
.+.+. ++++.++.. .+..+. . +++.+..+++.
T Consensus 187 -------------------------~~~l~-------------~~g~~~~~~-~v~~~~--~-~~~~~~~v~~~------ 218 (304)
T 4fk1_A 187 -------------------------MDELS-------------NKNIPVITE-SIRTLQ--G-EGGYLKKVEFH------ 218 (304)
T ss_dssp -------------------------HHHHH-------------TTTCCEECS-CEEEEE--S-GGGCCCEEEET------
T ss_pred -------------------------hhhhh-------------ccceeEeee-eEEEee--c-CCCeeeeeecc------
Confidence 11111 445666654 345554 3 34555555442
Q ss_pred CCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccc
Q 014990 317 GGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGI 396 (415)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~ 396 (415)
+++++++|.+++++|.+|++ .+....|+.++++|++.+|++ ++||.|||||+|||++.+...
T Consensus 219 ------------~g~~i~~~~~vi~~g~~~~~----~~~~~~g~~~~~~G~I~vd~~--~~Ts~p~IyA~GDv~~~~~~~ 280 (304)
T 4fk1_A 219 ------------SGLRIERAGGFIVPTFFRPN----QFIEQLGCELQSNGTFVIDDF--GRTSEKNIYLAGETTTQGPSS 280 (304)
T ss_dssp ------------TSCEECCCEEEECCEEECSS----CHHHHTTCCCCTTSSSCSSTT--CBCSSTTEEECSHHHHTSCCC
T ss_pred ------------ccceeeecceeeeeccccCC----hhhhhcCeEECCCCCEEECcC--CccCCCCEEEEeccCCCcchH
Confidence 22378899888888877755 244567888999999999987 899999999999998644433
Q ss_pred hhhhhhhHHHHHhhcccc
Q 014990 397 IATNLYCAEETVSSLSLI 414 (415)
Q Consensus 397 ~~~a~~~g~~~a~~i~~~ 414 (415)
+..|+.||+.||..|++.
T Consensus 281 ~~~A~~~G~~AA~~i~~~ 298 (304)
T 4fk1_A 281 LIIAASQGNKAAIAINSD 298 (304)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 447999999999998753
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-31 Score=257.60 Aligned_cols=286 Identities=20% Similarity=0.189 Sum_probs=200.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-------CCCCc--chHHHHHHHHHHhhccCeE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHP--ETKIVINQFSRVVQHERCS 88 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~ 88 (415)
..++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.... .+.++ ...++..++.+.++..++.
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNN--ISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPD 90 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCE
Confidence 4679999999999999999999998 99999999988877653111 12222 3356777788888888888
Q ss_pred EEeceEece---------EEEeccc-ccccCEEEEccCCC--CCCCCCCCC-CC-CC--CeeechhhHHHhcCCCCCCCC
Q 014990 89 FFGNVTLGS---------SVSLSEL-RQLYHVVVLAYGAE--SDRALGIPG-ED-LI--GVHSAREFVWWYNGHPDGKNL 152 (415)
Q Consensus 89 ~~~~~~v~~---------~v~~~~~-~~~~d~lvlAtG~~--~~~~~~i~g-~~-~~--~v~~~~~~~~~~~~~~~~~~~ 152 (415)
++.+..+.. .+...++ ...||+||+|||+. .|..+++|| .+ .. .+++... ..
T Consensus 91 ~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~------~~------ 158 (360)
T 3ab1_A 91 VVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVK------SV------ 158 (360)
T ss_dssp EECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCS------CG------
T ss_pred EEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecC------CH------
Confidence 877655421 2333333 35799999999984 366667777 43 21 2322210 00
Q ss_pred CCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCC
Q 014990 153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKN 232 (415)
Q Consensus 153 ~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~ 232 (415)
....+++|+|||+|.+|+|+|..|.+ . ..+|+++.|++.+..
T Consensus 159 --~~~~~~~vvVvG~G~~g~e~A~~l~~--------------------~-g~~V~lv~~~~~~~~--------------- 200 (360)
T 3ab1_A 159 --EDFKGKRVVIVGGGDSALDWTVGLIK--------------------N-AASVTLVHRGHEFQG--------------- 200 (360)
T ss_dssp --GGGTTCEEEEECSSHHHHHHHHHTTT--------------------T-SSEEEEECSSSSCSS---------------
T ss_pred --HHcCCCcEEEECCCHHHHHHHHHHHh--------------------c-CCEEEEEEcCCCCCC---------------
Confidence 01157999999999999999999986 2 468999998864311
Q ss_pred eeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeee
Q 014990 233 LYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKT 312 (415)
Q Consensus 233 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~ 312 (415)
.+. ...++.+.+. +.||+++++..+.++. . +++.+..+.+..
T Consensus 201 ------------~~~---------~~~~l~~~~~-------------~~gv~i~~~~~v~~i~--~-~~~~v~~v~~~~- 242 (360)
T 3ab1_A 201 ------------HGK---------TAHEVERARA-------------NGTIDVYLETEVASIE--E-SNGVLTRVHLRS- 242 (360)
T ss_dssp ------------CSH---------HHHSSHHHHH-------------HTSEEEESSEEEEEEE--E-ETTEEEEEEEEE-
T ss_pred ------------CHH---------HHHHHHHHhh-------------cCceEEEcCcCHHHhc--c-CCCceEEEEEEe-
Confidence 010 0011111111 4579999999999887 4 345565666541
Q ss_pred eecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccC
Q 014990 313 ALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG 392 (415)
Q Consensus 313 ~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~ 392 (415)
.+|+.+++++|.||+|+|++|+. ++....++.++ +|++.+|+. ++|+.|||||+|||+..
T Consensus 243 -------------~~g~~~~i~~D~vi~a~G~~p~~----~~l~~~~~~~~-~g~i~vd~~--~~t~~~~vya~GD~~~~ 302 (360)
T 3ab1_A 243 -------------SDGSKWTVEADRLLILIGFKSNL----GPLARWDLELY-ENALVVDSH--MKTSVDGLYAAGDIAYY 302 (360)
T ss_dssp -------------TTCCEEEEECSEEEECCCBCCSC----GGGGGSSCCEE-TTEEECCTT--SBCSSTTEEECSTTEEC
T ss_pred -------------cCCCeEEEeCCEEEECCCCCCCH----HHHHhhccccc-cCeeeecCC--CcCCCCCEEEecCccCC
Confidence 14555689999999999999965 34455566666 689999985 88999999999999853
Q ss_pred C--ccchhhhhhhHHHHHhhccc
Q 014990 393 P--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 393 ~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ......|+.||+.+|.+|.+
T Consensus 303 ~~~~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 303 PGKLKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCccceeehhHHHHHHHHHHHHh
Confidence 3 34555799999999999864
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-31 Score=270.01 Aligned_cols=292 Identities=17% Similarity=0.226 Sum_probs=201.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-CC------------------------CCCCc-
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GV------------------------APDHP- 69 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~~------------------------~~~~~- 69 (415)
.+..++|+|||||+||+++|.+|++.+ .+|+|||+++.+||...+ +. .+...
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~ 117 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTE 117 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHh
Confidence 346789999999999999999999998 999999999877775321 10 11111
Q ss_pred c---hHHHHHHHH-------HHh-----hccCeEEE-eceEe---ceEEEecccccccCEEEEccCCCCCCCCCCCCCCC
Q 014990 70 E---TKIVINQFS-------RVV-----QHERCSFF-GNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDL 130 (415)
Q Consensus 70 ~---~~~~~~~~~-------~~~-----~~~~~~~~-~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~ 130 (415)
. ..++...+. ..+ +..+++++ .+... ...+.+......||+||+|||+ .|..|++||.+.
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~G~~~ 196 (523)
T 1mo9_A 118 KVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGA-GPGTLDVPGVNA 196 (523)
T ss_dssp CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCE-ECCCCCSTTTTS
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECCCC-CCCCCCCCCccc
Confidence 1 333333332 344 56678877 33221 1234443334589999999999 788889999887
Q ss_pred CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEe
Q 014990 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (415)
Q Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 210 (415)
.++++..++...+.. . ++++|+|||+|.+|+|+|..|.+ .+ .+|+++.
T Consensus 197 ~~v~~~~~~~~~l~~----------~-~g~~vvViGgG~~g~E~A~~l~~--------------------~G-~~Vtlv~ 244 (523)
T 1mo9_A 197 KGVFDHATLVEELDY----------E-PGSTVVVVGGSKTAVEYGCFFNA--------------------TG-RRTVMLV 244 (523)
T ss_dssp BTEEEHHHHHHHCCS----------C-CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEC
T ss_pred CcEeeHHHHHHHHHh----------c-CCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEE
Confidence 778877665522211 1 35999999999999999999986 34 5899999
Q ss_pred ecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccc
Q 014990 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (415)
Q Consensus 211 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (415)
+++.+...+ +++ +...+.+.+. +.||+++++..
T Consensus 245 ~~~~~l~~~-~~~---------------------------------~~~~l~~~l~-------------~~GV~i~~~~~ 277 (523)
T 1mo9_A 245 RTEPLKLIK-DNE---------------------------------TRAYVLDRMK-------------EQGMEIISGSN 277 (523)
T ss_dssp SSCTTTTCC-SHH---------------------------------HHHHHHHHHH-------------HTTCEEESSCE
T ss_pred ecCcccccc-cHH---------------------------------HHHHHHHHHH-------------hCCcEEEECCE
Confidence 987542211 111 1112222332 56899999999
Q ss_pred cccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCc-ccCCCCccccCCCcee
Q 014990 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLP-FDNHKGIVPNIRGRVL 369 (415)
Q Consensus 291 ~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~-~~~~~g~~~~~~G~i~ 369 (415)
+.++. .++++.+.++.+.. .+|+ .+++||.||+|+|++|+. . +....|+.++++|++.
T Consensus 278 V~~i~--~~~~~~v~~~~v~~--------------~~G~-~~i~aD~Vv~A~G~~p~~----~~~l~~~gl~~~~~G~i~ 336 (523)
T 1mo9_A 278 VTRIE--EDANGRVQAVVAMT--------------PNGE-MRIETDFVFLGLGEQPRS----AELAKILGLDLGPKGEVL 336 (523)
T ss_dssp EEEEE--ECTTSBEEEEEEEE--------------TTEE-EEEECSCEEECCCCEECC----HHHHHHHTCCBCTTSCBC
T ss_pred EEEEE--EcCCCceEEEEEEE--------------CCCc-EEEEcCEEEECcCCccCC----ccCHHHcCCccCCCCCEE
Confidence 99886 31233332232211 1232 379999999999999975 2 3455677788889999
Q ss_pred eccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 370 v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|++ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 337 Vd~~--~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~g 377 (523)
T 1mo9_A 337 VNEY--LQTSVPNVYAVGDLIGGPM-EMFKARKSGCYAARNVMG 377 (523)
T ss_dssp CCTT--SBCSSTTEEECGGGGCSSC-SHHHHHHHHHHHHHHHTT
T ss_pred ECCC--CccCCCCEEEEeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 9987 8899999999999986554 455799999999999874
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=267.36 Aligned_cols=282 Identities=16% Similarity=0.210 Sum_probs=202.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC--CC--C--CCcchHHHHHHHHHHhhccCeEEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--VA--P--DHPETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~--~~--~--~~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
+..++|+||||||||+++|.+|++.| .+|+|||+ ..||.+... +. + .+....++...+.+.+++.+++++
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G--~~v~lie~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~ 285 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKG--IRTGLMGE--RFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVI 285 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECS--STTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEE
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCC--CeEEEEEC--CCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 35789999999999999999999999 99999986 355554321 10 1 112345667778888888899998
Q ss_pred eceEec-----------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCC
Q 014990 91 GNVTLG-----------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPD 155 (415)
Q Consensus 91 ~~~~v~-----------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~ 155 (415)
.++.+. ..++++++ ...||+||+|||+ .++.|++||.+ ..++++... . ...
T Consensus 286 ~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~-~~~~~~ipG~~~~~~~~v~~~~~-~------------~~~ 351 (521)
T 1hyu_A 286 DSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGA-KWRNMNVPGEDQYRTKGVTYCPH-C------------DGP 351 (521)
T ss_dssp CSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCE-EECCCCCTTTTTTTTTTEECCTT-C------------CGG
T ss_pred cCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCC-CcCCCCCCChhhhcCceEEEeec-C------------chh
Confidence 885431 22444444 3579999999999 67778888875 123332211 0 001
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeE
Q 014990 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (415)
Q Consensus 156 ~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~ 235 (415)
...+++|+|||+|++|+|+|..|.+ ...+|+++.|++.+.. .+.+
T Consensus 352 ~~~~k~V~ViGgG~~g~E~A~~L~~---------------------~g~~Vtlv~~~~~l~~---~~~l----------- 396 (521)
T 1hyu_A 352 LFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEMKA---DQVL----------- 396 (521)
T ss_dssp GGBTSEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEECSSSSCCS---CHHH-----------
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEeCcccCc---CHHH-----------
Confidence 2368999999999999999999986 2368999998865321 0001
Q ss_pred EEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCc-eeEEEEeccccccccccCCCCCCeeeEEEeeeee
Q 014990 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ-RELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314 (415)
Q Consensus 236 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~ 314 (415)
.+.+. + .||+++++..++++. . +++++.++.+.+.
T Consensus 397 --------------------------~~~l~-------------~~~gV~v~~~~~v~~i~--~-~~~~v~~v~~~~~-- 432 (521)
T 1hyu_A 397 --------------------------QDKVR-------------SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR-- 432 (521)
T ss_dssp --------------------------HHHHT-------------TCTTEEEECSEEEEEEE--E-CSSSEEEEEEEET--
T ss_pred --------------------------HHHHh-------------cCCCcEEEeCCEEEEEE--c-CCCcEEEEEEEeC--
Confidence 11111 3 589999999999987 4 3556767776541
Q ss_pred cCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc
Q 014990 315 KGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT 394 (415)
Q Consensus 315 ~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~ 394 (415)
.+|+..++++|.|++++|++|+. +|... .+.++++|++.+|++ ++|+.|||||+|||+..+.
T Consensus 433 -----------~~g~~~~i~~D~vi~a~G~~pn~----~~l~~-~l~~~~~G~I~Vd~~--~~ts~p~VfA~GD~~~~~~ 494 (521)
T 1hyu_A 433 -----------VSGDIHSVALAGIFVQIGLLPNT----HWLEG-ALERNRMGEIIIDAK--CETSVKGVFAAGDCTTVPY 494 (521)
T ss_dssp -----------TTCCEEEEECSEEEECCCEEESC----GGGTT-TSCBCTTSCBCCCTT--CBCSSTTEEECSTTBCCSS
T ss_pred -----------CCCceEEEEcCEEEECcCCCCCc----hHHhh-hhccCCCCcEEeCCC--CCCCCCCEEEeecccCCCc
Confidence 14555689999999999999976 34333 366788899999987 8899999999999997665
Q ss_pred cchhhhhhhHHHHHhhccc
Q 014990 395 GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 395 ~~~~~a~~~g~~~a~~i~~ 413 (415)
.....|+.||+.||.+|..
T Consensus 495 ~~~~~A~~~g~~aa~~i~~ 513 (521)
T 1hyu_A 495 KQIIIATGEGAKASLSAFD 513 (521)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred ceeeehHHhHHHHHHHHHH
Confidence 5555899999999999875
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=268.70 Aligned_cols=290 Identities=16% Similarity=0.174 Sum_probs=193.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC---CCCCcchHHHHHHHHHHh-hccCeEEEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHPETKIVINQFSRVV-QHERCSFFGNV 93 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 93 (415)
.+++|+|||||+||+++|..|++.+++.+|+|||+++.++... ++. ..+...+.++..+..+.+ +..+++++.++
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 80 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP-CGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNA 80 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-------------------------CTHHHHTTCEEETTC
T ss_pred CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC-cCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecC
Confidence 3589999999999999999999996559999999998765332 111 011122223333333333 56789998886
Q ss_pred Eec------eEEEeccc--ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEE
Q 014990 94 TLG------SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAV 163 (415)
Q Consensus 94 ~v~------~~v~~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~ 163 (415)
.+. ..+...+. ...||+||+|||+ .|+.|++||.+.+++++...... .+...+. ...+++|+
T Consensus 81 ~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~-------~~~~~~vv 152 (449)
T 3kd9_A 81 EVIEVDTGYVRVRENGGEKSYEWDYLVFANGA-SPQVPAIEGVNLKGVFTADLPPDALAIREYME-------KYKVENVV 152 (449)
T ss_dssp EEEEECSSEEEEECSSSEEEEECSEEEECCCE-EECCCSCBTTTSTTEECSCSTHHHHHHHHHHS-------SSCCCEEE
T ss_pred EEEEEecCCCEEEECCceEEEEcCEEEECCCC-CCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHH-------hcCCCeEE
Confidence 542 23444433 3579999999998 78888999988777765432211 1111100 01578999
Q ss_pred EEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccC
Q 014990 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (415)
Q Consensus 164 VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (415)
|||+|.+|+|+|..|.+ .+ .+|+++.|++.+.....++++.+
T Consensus 153 ViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~~~~~----------------- 194 (449)
T 3kd9_A 153 IIGGGYIGIEMAEAFAA--------------------QG-KNVTMIVRGERVLRRSFDKEVTD----------------- 194 (449)
T ss_dssp EECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTSCHHHHH-----------------
T ss_pred EECCCHHHHHHHHHHHh--------------------CC-CeEEEEEcCCccchhhcCHHHHH-----------------
Confidence 99999999999999986 34 58999999876533212221111
Q ss_pred CCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcce
Q 014990 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (415)
Q Consensus 244 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~ 323 (415)
.+.+.+ . +. |+++++..+.++. . ++.+..+..
T Consensus 195 ----------------~l~~~l----~---------~~-v~i~~~~~v~~i~--~--~~~v~~v~~-------------- 226 (449)
T 3kd9_A 195 ----------------ILEEKL----K---------KH-VNLRLQEITMKIE--G--EERVEKVVT-------------- 226 (449)
T ss_dssp ----------------HHHHHH----T---------TT-SEEEESCCEEEEE--C--SSSCCEEEE--------------
T ss_pred ----------------HHHHHH----H---------hC-cEEEeCCeEEEEe--c--cCcEEEEEe--------------
Confidence 111222 1 45 8999998888886 3 333332211
Q ss_pred eccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc------CC---c
Q 014990 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR------GP---T 394 (415)
Q Consensus 324 ~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~------~~---~ 394 (415)
++ .++++|.||+|+|++|+. ++....|+.++++|++.+|++ ++|+.|||||+|||+. +. .
T Consensus 227 ---~g--~~i~~D~Vv~a~G~~p~~----~l~~~~gl~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~~~~ 295 (449)
T 3kd9_A 227 ---DA--GEYKAELVILATGIKPNI----ELAKQLGVRIGETGAIWTNEK--MQTSVENVYAAGDVAETRHVITGRRVWV 295 (449)
T ss_dssp ---TT--EEEECSEEEECSCEEECC----HHHHHTTCCBCTTSSBCCCTT--CBCSSTTEEECSTTBCEEBTTTCSEECC
T ss_pred ---CC--CEEECCEEEEeeCCccCH----HHHHhCCccCCCCCCEEECCC--CccCCCCEEEeeeeeeeccccCCceEEe
Confidence 22 379999999999999975 344566788888999999986 8999999999999974 21 2
Q ss_pred cchhhhhhhHHHHHhhccc
Q 014990 395 GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 395 ~~~~~a~~~g~~~a~~i~~ 413 (415)
.....|..||+.+|.+|..
T Consensus 296 ~l~~~A~~~g~~aa~~i~g 314 (449)
T 3kd9_A 296 PLAPAGNKMGYVAGSNIAG 314 (449)
T ss_dssp CCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHhcC
Confidence 3455799999999999864
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-32 Score=269.32 Aligned_cols=286 Identities=17% Similarity=0.231 Sum_probs=195.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc---cccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++|+|||||+||+++|..|++.+++.+|+|||+++.++.. +......+......+ ....+.+.+.+++++.++.+.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~v~ 81 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADWYGEARIDMLTGPEVT 81 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTHHHHTTCEEEESCCEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHHHHHCCCEEEeCCEEE
Confidence 5899999999999999999999955569999998865421 000000000001111 111233455689998885542
Q ss_pred ------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEEEcC
Q 014990 97 ------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVILGQ 167 (415)
Q Consensus 97 ------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~VVG~ 167 (415)
+.+...++ ...||+||+|||+ .|+.|++||.+.+++++...... .+... +..+++|+|||+
T Consensus 82 ~id~~~~~v~~~~g~~~~~d~lvlAtG~-~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~---------~~~~~~vvViGg 151 (410)
T 3ef6_A 82 ALDVQTRTISLDDGTTLSADAIVIATGS-RARTMALPGSQLPGVVTLRTYGDVQVLRDS---------WTSATRLLIVGG 151 (410)
T ss_dssp EEETTTTEEEETTSCEEECSEEEECCCE-EECCCCCTTTTSTTEECCCSHHHHHHHHHH---------CCTTCEEEEECC
T ss_pred EEECCCCEEEECCCCEEECCEEEEccCC-cccCCCCCCccccceEEeccHHHHHHHHHH---------hccCCeEEEECC
Confidence 24555444 3589999999999 68888999988777776533222 12111 226899999999
Q ss_pred ChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCC
Q 014990 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (415)
Q Consensus 168 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 247 (415)
|.+|+|+|..|.+ .+ .+|+++.+.+.+....
T Consensus 152 G~~g~E~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~---------------------------- 182 (410)
T 3ef6_A 152 GLIGCEVATTARK--------------------LG-LSVTILEAGDELLVRV---------------------------- 182 (410)
T ss_dssp SHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSSHHH----------------------------
T ss_pred CHHHHHHHHHHHh--------------------CC-CeEEEEecCCccchhh----------------------------
Confidence 9999999999986 34 5899999886532100
Q ss_pred cHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccC
Q 014990 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~ 327 (415)
..+.+...+.+.+. +.||+++++..+.++. . ++.+..+++. +
T Consensus 183 -----~~~~~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~--~~~~~~v~~~----------------d 224 (410)
T 3ef6_A 183 -----LGRRIGAWLRGLLT-------------ELGVQVELGTGVVGFS--G--EGQLEQVMAS----------------D 224 (410)
T ss_dssp -----HCHHHHHHHHHHHH-------------HHTCEEECSCCEEEEE--C--SSSCCEEEET----------------T
T ss_pred -----cCHHHHHHHHHHHH-------------HCCCEEEeCCEEEEEe--c--cCcEEEEEEC----------------C
Confidence 00111222223332 5689999999999987 4 4455455542 2
Q ss_pred CceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCcc--------chhh
Q 014990 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG--------IIAT 399 (415)
Q Consensus 328 g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~--------~~~~ 399 (415)
| ++++||.||+|+|++|+. ++....|+..+ +| +.+|++ ++|+.|||||+|||+..+.. ....
T Consensus 225 g--~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~ 294 (410)
T 3ef6_A 225 G--RSFVADSALICVGAEPAD----QLARQAGLACD-RG-VIVDHC--GATLAKGVFAVGDVASWPLRAGGRRSLETYMN 294 (410)
T ss_dssp S--CEEECSEEEECSCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEEEBTTSSEECCCCHHH
T ss_pred C--CEEEcCEEEEeeCCeecH----HHHHhCCCccC-Ce-EEEccC--eeECCCCEEEEEcceeccCCCCCeeeechHHH
Confidence 2 279999999999999975 34455677766 45 888886 78999999999999864431 2457
Q ss_pred hhhhHHHHHhhccc
Q 014990 400 NLYCAEETVSSLSL 413 (415)
Q Consensus 400 a~~~g~~~a~~i~~ 413 (415)
|+.||+.||.+|..
T Consensus 295 A~~qg~~aa~~i~g 308 (410)
T 3ef6_A 295 AQRQAAAVAAAILG 308 (410)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999874
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=266.75 Aligned_cols=288 Identities=17% Similarity=0.180 Sum_probs=195.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-ccc--CCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRS--GVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
+++|+|||||+||+++|..|++.+++.+|+|||+++.++.. ... ....+.....++.......+.+.+++++. ..+
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v 79 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRM 79 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCE
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEE
Confidence 46899999999999999999999944599999998754321 100 01011111111111223344556888877 333
Q ss_pred ------ceEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEEEc
Q 014990 96 ------GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVILG 166 (415)
Q Consensus 96 ------~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~VVG 166 (415)
.+.+...++ ...||+||+|||+ .|+.|++||.+.+++++...... .+... +..+++|+|||
T Consensus 80 ~~id~~~~~v~~~~g~~~~~d~lvlAtG~-~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~---------~~~~~~vvViG 149 (404)
T 3fg2_P 80 VSIDREGRKLLLASGTAIEYGHLVLATGA-RNRMLDVPNASLPDVLYLRTLDESEVLRQR---------MPDKKHVVVIG 149 (404)
T ss_dssp EEEETTTTEEEESSSCEEECSEEEECCCE-EECCCCSTTTTSTTEECCSSHHHHHHHHHH---------GGGCSEEEEEC
T ss_pred EEEECCCCEEEECCCCEEECCEEEEeeCC-CccCCCCCCCCCCcEEEECCHHHHHHHHHH---------hhcCCeEEEEC
Confidence 223555444 3589999999999 78888999988777775432221 11111 22579999999
Q ss_pred CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCC
Q 014990 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSP 246 (415)
Q Consensus 167 ~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p 246 (415)
+|.+|+|+|..+.+ .+ .+|+++.+.+.+......+++
T Consensus 150 gG~~g~e~A~~l~~--------------------~g-~~Vtvv~~~~~~~~~~~~~~~---------------------- 186 (404)
T 3fg2_P 150 AGFIGLEFAATARA--------------------KG-LEVDVVELAPRVMARVVTPEI---------------------- 186 (404)
T ss_dssp CSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSTTTTTSCHHH----------------------
T ss_pred CCHHHHHHHHHHHh--------------------CC-CEEEEEeCCCcchhhccCHHH----------------------
Confidence 99999999999986 33 589999988654322111111
Q ss_pred CcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceecc
Q 014990 247 TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG 326 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~ 326 (415)
...+.+.+. +.||+++++..+.++. . +++.+..+++.
T Consensus 187 -----------~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~~V~~~---------------- 223 (404)
T 3fg2_P 187 -----------SSYFHDRHS-------------GAGIRMHYGVRATEIA--A-EGDRVTGVVLS---------------- 223 (404)
T ss_dssp -----------HHHHHHHHH-------------HTTCEEECSCCEEEEE--E-ETTEEEEEEET----------------
T ss_pred -----------HHHHHHHHH-------------hCCcEEEECCEEEEEE--e-cCCcEEEEEeC----------------
Confidence 111222222 5689999999998887 4 34555555442
Q ss_pred CCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCcc---------ch
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG---------II 397 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~---------~~ 397 (415)
+| ++++||.||+|+|++|+. ++....|+..+ +| +.+|++ ++|+.|||||+|||+..+.. ..
T Consensus 224 dG--~~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~-~G-i~vd~~--~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~ 293 (404)
T 3fg2_P 224 DG--NTLPCDLVVVGVGVIPNV----EIAAAAGLPTA-AG-IIVDQQ--LLTSDPHISAIGDCALFESVRFGETMRVESV 293 (404)
T ss_dssp TS--CEEECSEEEECCCEEECC----HHHHHTTCCBS-SS-EEECTT--SBCSSTTEEECGGGEEEEETTTTEEECCCSH
T ss_pred CC--CEEEcCEEEECcCCccCH----HHHHhCCCCCC-CC-EEECCC--cccCCCCEEEeecceeecCccCCceeeehHH
Confidence 23 279999999999999975 34455677666 46 889886 78999999999999864431 24
Q ss_pred hhhhhhHHHHHhhccc
Q 014990 398 ATNLYCAEETVSSLSL 413 (415)
Q Consensus 398 ~~a~~~g~~~a~~i~~ 413 (415)
..|+.||+.||.+|..
T Consensus 294 ~~A~~qg~~aa~~i~g 309 (404)
T 3fg2_P 294 QNATDQARCVAARLTG 309 (404)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5799999999999875
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=270.52 Aligned_cols=292 Identities=18% Similarity=0.206 Sum_probs=199.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-CCCCCC----------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDH---------------------------- 68 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~~~~~~---------------------------- 68 (415)
..++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.. +..|.+
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLG--FKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVR 82 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCc
Confidence 4579999999999999999999998 999999999888775321 110100
Q ss_pred cchHHH-----------HHHHHHHhhccCeEEEeceEec-----eEEEecc---cccccCEEEEccCCCCCCCCCCCCCC
Q 014990 69 PETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSE---LRQLYHVVVLAYGAESDRALGIPGED 129 (415)
Q Consensus 69 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~---~~~~~d~lvlAtG~~~~~~~~i~g~~ 129 (415)
.....+ ...+...++..+++++.+..+. ..+...+ ....||+||+|||+ .|+.|+++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs-~p~~p~i~g~~ 161 (474)
T 1zmd_A 83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGS-EVTPFPGITID 161 (474)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCE-EECCCTTCCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCC-CCCCCCCCCCC
Confidence 001111 1122455566789988876542 1233333 23589999999999 68888899887
Q ss_pred CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEE
Q 014990 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (415)
Q Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 209 (415)
..+++++.++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++
T Consensus 162 ~~~v~t~~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv 207 (474)
T 1zmd_A 162 EDTIVSSTGALS----L---------KKVPEKMVVIGAGVIGVELGSVWQR--------------------LG-ADVTAV 207 (474)
T ss_dssp SSSEECHHHHTT----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEE
T ss_pred cCcEEcHHHHhh----c---------cccCceEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEE
Confidence 656766554331 1 0146899999999999999999986 34 589999
Q ss_pred eecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecc
Q 014990 210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (415)
Q Consensus 210 ~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~ 289 (415)
.|++.+.....++++ ...+.+.+. +.||+++++.
T Consensus 208 ~~~~~~l~~~~~~~~---------------------------------~~~l~~~l~-------------~~Gv~i~~~~ 241 (474)
T 1zmd_A 208 EFLGHVGGVGIDMEI---------------------------------SKNFQRILQ-------------KQGFKFKLNT 241 (474)
T ss_dssp CSSSSSSCSSCCHHH---------------------------------HHHHHHHHH-------------HTTCEEECSE
T ss_pred eccCccCCcccCHHH---------------------------------HHHHHHHHH-------------HCCCEEEeCc
Confidence 998754320111111 111222232 5689999999
Q ss_pred ccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCcee
Q 014990 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (415)
Q Consensus 290 ~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~ 369 (415)
.+.++. . +++....+++.+. ..++++++++|.||+|+|++|+. ..+. .+..|+.++++|++.
T Consensus 242 ~v~~i~--~-~~~~~~~v~~~~~-------------~~~~~~~i~~D~vv~a~G~~p~~-~~l~-l~~~g~~~~~~G~i~ 303 (474)
T 1zmd_A 242 KVTGAT--K-KSDGKIDVSIEAA-------------SGGKAEVITCDVLLVCIGRRPFT-KNLG-LEELGIELDPRGRIP 303 (474)
T ss_dssp EEEEEE--E-CTTSCEEEEEEET-------------TSCCCEEEEESEEEECSCEEECC-TTSS-HHHHTCCCCTTSCCC
T ss_pred eEEEEE--E-cCCceEEEEEEec-------------CCCCceEEEcCEEEECcCCCcCC-CcCC-chhcCCccCCCCCEE
Confidence 999886 3 2322123333210 02344589999999999999975 1111 234567778789999
Q ss_pred eccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 370 v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|+. ++|+.|||||+|||+..+. +...|+.||+.+|.+|..
T Consensus 304 vd~~--~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 344 (474)
T 1zmd_A 304 VNTR--FQTKIPNIYAIGDVVAGPM-LAHKAEDEGIICVEGMAG 344 (474)
T ss_dssp CCTT--CBCSSTTEEECGGGSSSCC-CHHHHHHHHHHHHHHHTT
T ss_pred ECcC--CccCCCCEEEeeecCCCCc-cHHHHHHHHHHHHHHhcC
Confidence 9987 7899999999999986554 455799999999999864
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=264.51 Aligned_cols=285 Identities=15% Similarity=0.214 Sum_probs=194.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-c------------------------CCCCCC--cch
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-S------------------------GVAPDH--PET 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~------------------------~~~~~~--~~~ 71 (415)
.++|+|||||+||+++|..|++.+ .+|+|||+. .+||... . ++.... ...
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 478999999999999999999998 999999998 5555321 1 110000 011
Q ss_pred HH-----------HHHHHHHHhhccCeEEEeceEec-----eEEEeccc--ccccCEEEEccCCCCCCCCCCCCCCCCCe
Q 014990 72 KI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (415)
Q Consensus 72 ~~-----------~~~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~~~~v 133 (415)
.. +...+...++..+++++.+..+. ..+...++ ...||+||+|||+ .|+.|+++|.+.. +
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs-~p~~~~~~g~~~~-v 157 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGS-RPIELPNFKFSNR-I 157 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCE-EECCBTTBCCCSS-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCC-CCCCCCCCCccce-E
Confidence 11 12223455667789988877542 12333333 3589999999999 6777788886543 5
Q ss_pred eechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+..++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.+++
T Consensus 158 ~~~~~~~~----~---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~ 203 (455)
T 1ebd_A 158 LDSTGALN----L---------GEVPKSLVVIGGGYIGIELGTAYAN--------------------FG-TKVTILEGAG 203 (455)
T ss_dssp ECHHHHHT----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSS
T ss_pred ecHHHHhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCC
Confidence 55444331 1 0147999999999999999999986 34 5899999986
Q ss_pred cccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccc
Q 014990 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (415)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 293 (415)
.+...+ + +.+...+.+.+. +.||+++++..+.+
T Consensus 204 ~~l~~~-~---------------------------------~~~~~~l~~~l~-------------~~gv~i~~~~~v~~ 236 (455)
T 1ebd_A 204 EILSGF-E---------------------------------KQMAAIIKKRLK-------------KKGVEVVTNALAKG 236 (455)
T ss_dssp SSSTTS-C---------------------------------HHHHHHHHHHHH-------------HTTCEEEESEEEEE
T ss_pred cccccc-C---------------------------------HHHHHHHHHHHH-------------HCCCEEEeCCEEEE
Confidence 542111 1 111122223332 56899999999888
Q ss_pred ccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccC
Q 014990 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (415)
Q Consensus 294 v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~ 373 (415)
+. . +++.+ .+++.. +|+++++++|.||+|+|++|+. ..+. .+..|+.++++|++.+|++
T Consensus 237 i~--~-~~~~~-~v~~~~---------------~g~~~~~~~D~vv~a~G~~p~~-~~l~-~~~~g~~~~~~G~i~vd~~ 295 (455)
T 1ebd_A 237 AE--E-REDGV-TVTYEA---------------NGETKTIDADYVLVTVGRRPNT-DELG-LEQIGIKMTNRGLIEVDQQ 295 (455)
T ss_dssp EE--E-ETTEE-EEEEEE---------------TTEEEEEEESEEEECSCEEESC-SSSS-TTTTTCCBCTTSCBCCCTT
T ss_pred EE--E-eCCeE-EEEEEe---------------CCceeEEEcCEEEECcCCCccc-CcCC-hhhcCCccCCCCCEeeCCC
Confidence 86 3 22222 233321 3445689999999999999975 1111 3566788888899999987
Q ss_pred CCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 374 ~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 296 --~~t~~~~Iya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 296 --CRTSVPNIFAIGDIVPGPA-LAHKASYEGKVAAEAIAG 332 (455)
T ss_dssp --CBCSSTTEEECGGGSSSCC-CHHHHHHHHHHHHHHHTS
T ss_pred --cccCCCCEEEEeccCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 8899999999999986554 455799999999999864
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=247.69 Aligned_cols=269 Identities=13% Similarity=0.145 Sum_probs=188.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc--cCCCC-CCcchHHHHHHHHHHhhcc-CeEEEeceEe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR--SGVAP-DHPETKIVINQFSRVVQHE-RCSFFGNVTL 95 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~--~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v 95 (415)
++|+|||||+||+++|..|++.+ .+|+|||+.+..+.+.. +.... ......++..++.+.+.+. ++.+..+...
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 80 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRAR--KNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVT 80 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEESCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEE
Confidence 68999999999999999999999 99999999865443331 11211 1234557777888888776 6777655433
Q ss_pred c-------eEEEecccc-cccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEE
Q 014990 96 G-------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVI 164 (415)
Q Consensus 96 ~-------~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~V 164 (415)
. ..+...+.. ..||+||+|||+ .++.|++||.+. ..++++. +.... ...+++|+|
T Consensus 81 ~i~~~~~~~~v~~~~g~~~~~d~vviAtG~-~~~~~~~~g~~~~~~~~~~~~~-~~~~~------------~~~~~~v~v 146 (297)
T 3fbs_A 81 DAKGSFGEFIVEIDGGRRETAGRLILAMGV-TDELPEIAGLRERWGSAVFHCP-YCHGY------------ELDQGKIGV 146 (297)
T ss_dssp EEEEETTEEEEEETTSCEEEEEEEEECCCC-EEECCCCBTTGGGBTTTEESCH-HHHTG------------GGTTCEEEE
T ss_pred EEEEcCCeEEEEECCCCEEEcCEEEECCCC-CCCCCCCCCchhhcCCeeEEcc-cCcch------------hhcCCEEEE
Confidence 2 134444443 579999999999 678888998763 3444332 22111 115899999
Q ss_pred EcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCC
Q 014990 165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244 (415)
Q Consensus 165 VG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (415)
||+|.+|+|+|..|.+ .+ +|+++.++... +. +.+
T Consensus 147 vG~G~~~~e~a~~l~~--------------------~g--~v~~v~~~~~~---~~-~~~-------------------- 180 (297)
T 3fbs_A 147 IAASPMAIHHALMLPD--------------------WG--ETTFFTNGIVE---PD-ADQ-------------------- 180 (297)
T ss_dssp ECCSTTHHHHHHHGGG--------------------TS--EEEEECTTTCC---CC-HHH--------------------
T ss_pred EecCccHHHHHHHhhh--------------------cC--cEEEEECCCCC---CC-HHH--------------------
Confidence 9999999999999986 44 89999887531 11 111
Q ss_pred CCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCccee
Q 014990 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYA 324 (415)
Q Consensus 245 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~ 324 (415)
.+.+. +.||+++. ..+.++. . ++ .+.+.
T Consensus 181 -----------------~~~l~-------------~~gv~i~~-~~v~~i~--~--~~---~v~~~-------------- 208 (297)
T 3fbs_A 181 -----------------HALLA-------------ARGVRVET-TRIREIA--G--HA---DVVLA-------------- 208 (297)
T ss_dssp -----------------HHHHH-------------HTTCEEEC-SCEEEEE--T--TE---EEEET--------------
T ss_pred -----------------HHHHH-------------HCCcEEEc-ceeeeee--c--CC---eEEeC--------------
Confidence 11221 55788875 6777775 3 22 34332
Q ss_pred ccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcccc--CCC-ceeeccCCCCCcccCCeeeeeccccCCccchhhhh
Q 014990 325 VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN--IRG-RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401 (415)
Q Consensus 325 ~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~--~~G-~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~ 401 (415)
+| +++++|.||+|+|++|+. ++....++..+ .+| ++.+|++ ++|+.|||||+|||+..+.. ...|+
T Consensus 209 --~g--~~~~~D~vi~a~G~~p~~----~~~~~~g~~~~~~~~G~~i~vd~~--~~t~~~~vya~GD~~~~~~~-~~~A~ 277 (297)
T 3fbs_A 209 --DG--RSIALAGLFTQPKLRITV----DWIEKLGCAVEEGPMGSTIVTDPM--KQTTARGIFACGDVARPAGS-VALAV 277 (297)
T ss_dssp --TS--CEEEESEEEECCEEECCC----SCHHHHTCCEEEETTEEEECCCTT--CBCSSTTEEECSGGGCTTCC-HHHHH
T ss_pred --CC--CEEEEEEEEEccCcccCc----hhHHhcCCccccCCCCceEEeCCC--CccCCCCEEEEeecCCchHH-HHHHH
Confidence 22 379999999999999965 34444555555 357 8999987 88999999999999875554 44799
Q ss_pred hhHHHHHhhccc
Q 014990 402 YCAEETVSSLSL 413 (415)
Q Consensus 402 ~~g~~~a~~i~~ 413 (415)
.||+.||.+|.+
T Consensus 278 ~~g~~aa~~i~~ 289 (297)
T 3fbs_A 278 GDGAMAGAAAHR 289 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 999999999865
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-31 Score=265.72 Aligned_cols=288 Identities=17% Similarity=0.214 Sum_probs=197.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCCC----------------------------c
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH----------------------------P 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~~----------------------------~ 69 (415)
.++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+. .+..|.+ .
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLG--MKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTM 79 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 478999999999999999999999 99999999988876522 1110100 0
Q ss_pred chHHH-----------HHHHHHHhhccCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCCCCC
Q 014990 70 ETKIV-----------INQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (415)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~ 130 (415)
....+ ...+...+++.+++++.+..+. ..+...++ ...||+||+|||+ .|+.|+++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~-~p~~p~~~g~~~ 158 (468)
T 2qae_A 80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGS-EPTELPFLPFDE 158 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCE-EECCBTTBCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCC-CcCCCCCCCCCc
Confidence 11111 1123445566788888776542 12333333 3589999999999 678888888776
Q ss_pred CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEe
Q 014990 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (415)
Q Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 210 (415)
+++++..++.. .. ..+++|+|||+|.+|+|+|..|.+ .+ .+|+++.
T Consensus 159 ~~v~t~~~~~~----~~---------~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~ 204 (468)
T 2qae_A 159 KVVLSSTGALA----LP---------RVPKTMVVIGGGVIGLELGSVWAR--------------------LG-AEVTVVE 204 (468)
T ss_dssp SSEECHHHHHT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEC
T ss_pred CceechHHHhh----cc---------cCCceEEEECCCHHHHHHHHHHHH--------------------hC-CEEEEEe
Confidence 66776655442 10 147999999999999999999986 34 5899999
Q ss_pred ecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHH-HHHHhccCCCCCCCceeEEEEecc
Q 014990 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELL-SKAAASASSQPMLGQRELHFVFFR 289 (415)
Q Consensus 211 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~v~~~~~~ 289 (415)
|++.+...+ ++ .+...+.+.+ . +.||+++++.
T Consensus 205 ~~~~~l~~~-d~---------------------------------~~~~~l~~~l~~-------------~~gv~i~~~~ 237 (468)
T 2qae_A 205 FAPRCAPTL-DE---------------------------------DVTNALVGALAK-------------NEKMKFMTST 237 (468)
T ss_dssp SSSSSSTTS-CH---------------------------------HHHHHHHHHHHH-------------HTCCEEECSC
T ss_pred cCCcccccC-CH---------------------------------HHHHHHHHHHhh-------------cCCcEEEeCC
Confidence 987542211 11 1112222333 2 5689999999
Q ss_pred ccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCcee
Q 014990 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (415)
Q Consensus 290 ~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~ 369 (415)
.+.++. . +++.+ .+.+.. .+|+.+++++|.||+|+|++|+. ..+. .+..|+.++++|++.
T Consensus 238 ~v~~i~--~-~~~~~-~v~~~~--------------~~g~~~~i~~D~vv~a~G~~p~~-~~l~-l~~~gl~~~~~G~i~ 297 (468)
T 2qae_A 238 KVVGGT--N-NGDSV-SLEVEG--------------KNGKRETVTCEALLVSVGRRPFT-GGLG-LDKINVAKNERGFVK 297 (468)
T ss_dssp EEEEEE--E-CSSSE-EEEEEC--------------C---EEEEEESEEEECSCEEECC-TTSC-HHHHTCCBCTTSCBC
T ss_pred EEEEEE--E-cCCeE-EEEEEc--------------CCCceEEEECCEEEECCCcccCC-CCCC-chhcCCccCCCCCEe
Confidence 998886 3 22222 333321 02434579999999999999975 1111 234567778789999
Q ss_pred eccCCCCCcccCCeeeeecccc-CCccchhhhhhhHHHHHhhccc
Q 014990 370 KNISGDSSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 370 v~~~~~~~t~~p~vfaiGD~~~-~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|++ ++|+.|||||+|||+. .+. ....|+.||+.+|.+|..
T Consensus 298 vd~~--~~t~~~~IyA~GD~~~~~~~-~~~~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 298 IGDH--FETSIPDVYAIGDVVDKGPM-LAHKAEDEGVACAEILAG 339 (468)
T ss_dssp CCTT--SBCSSTTEEECGGGBSSSCS-CHHHHHHHHHHHHHHHTT
T ss_pred ECCC--cccCCCCEEEeeccCCCCCc-cHhHHHHHHHHHHHHHcC
Confidence 9987 8899999999999986 444 455799999999999864
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-31 Score=265.69 Aligned_cols=291 Identities=19% Similarity=0.218 Sum_probs=199.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-CCCCCC---------------------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDH--------------------------- 68 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~~~~~~--------------------------- 68 (415)
...++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.. +..|.+
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE 81 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence 35789999999999999999999999 999999999878775321 110100
Q ss_pred cchHH-----------HHHHHHHHhhccCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCCCC
Q 014990 69 PETKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGED 129 (415)
Q Consensus 69 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~ 129 (415)
..... +...+...++..+++++.+..+. ..+...++ ...||+||+|||+ .|+.|+++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs-~p~~p~~~g~~ 160 (470)
T 1dxl_A 82 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGS-DVKSLPGVTID 160 (470)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCE-EECCBTTBCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCC-CCCCCCCCCCC
Confidence 00111 11123445556688888776542 12322232 3579999999999 67878888876
Q ss_pred CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEE
Q 014990 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (415)
Q Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 209 (415)
.+++++..++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++
T Consensus 161 ~~~v~~~~~~~~----~---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtli 206 (470)
T 1dxl_A 161 EKKIVSSTGALA----L---------SEIPKKLVVIGAGYIGLEMGSVWGR--------------------IG-SEVTVV 206 (470)
T ss_dssp SSSEECHHHHTT----C---------SSCCSEEEESCCSHHHHHHHHHHHH--------------------HT-CEEEEE
T ss_pred cccEEeHHHhhh----h---------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEE
Confidence 556666544331 1 1147999999999999999999985 34 589999
Q ss_pred eecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecc
Q 014990 210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (415)
Q Consensus 210 ~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~ 289 (415)
.|++.+...+ ++ .+...+.+.+. +.||+++++.
T Consensus 207 ~~~~~~l~~~-~~---------------------------------~~~~~l~~~l~-------------~~gv~i~~~~ 239 (470)
T 1dxl_A 207 EFASEIVPTM-DA---------------------------------EIRKQFQRSLE-------------KQGMKFKLKT 239 (470)
T ss_dssp CSSSSSSTTS-CH---------------------------------HHHHHHHHHHH-------------HSSCCEECSE
T ss_pred EcCCcccccc-cH---------------------------------HHHHHHHHHHH-------------HcCCEEEeCC
Confidence 9986542211 11 11112222332 5689999999
Q ss_pred ccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCcee
Q 014990 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (415)
Q Consensus 290 ~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~ 369 (415)
.+.++. . +++.+ .+++.+. .+|+++++++|.||+|+|++|+. ..+. ....|+.++++|++.
T Consensus 240 ~v~~i~--~-~~~~~-~v~~~~~-------------~~g~~~~~~~D~vv~a~G~~p~~-~~l~-~~~~gl~~~~~G~i~ 300 (470)
T 1dxl_A 240 KVVGVD--T-SGDGV-KLTVEPS-------------AGGEQTIIEADVVLVSAGRTPFT-SGLN-LDKIGVETDKLGRIL 300 (470)
T ss_dssp EEEEEE--C-SSSSE-EEEEEES-------------SSCCCEEEEESEEECCCCEEECC-TTSC-CTTTTCCBCSSSCBC
T ss_pred EEEEEE--E-cCCeE-EEEEEec-------------CCCcceEEECCEEEECCCCCcCC-CCCC-chhcCCccCCCCCEe
Confidence 999987 3 22222 3443320 02334589999999999999975 1111 356678888889999
Q ss_pred eccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 370 v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|++ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 301 vd~~--~~t~~~~Iya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 301 VNER--FSTNVSGVYAIGDVIPGPM-LAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp CCTT--CBCSSTTEEECSTTSSSCC-CHHHHHHHHHHHHHHHTT
T ss_pred ECcC--CccCCCCEEEEeccCCCCc-cHHHHHHHHHHHHHHHcC
Confidence 9987 8899999999999986544 455799999999999864
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-32 Score=267.66 Aligned_cols=272 Identities=15% Similarity=0.171 Sum_probs=186.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cc-cCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
++++|+|||||+||++||..|.+.+ .+|+|||+++.++.. .. ....++.....++..+..+.+++.+++++.++.+
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~--~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V 85 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKC--DDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFA 85 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTC--SCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCC--CEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEE
Confidence 5778999999999999999995555 999999999875421 00 0001122222333333445556678999888655
Q ss_pred c------eEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEEEc
Q 014990 96 G------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVILG 166 (415)
Q Consensus 96 ~------~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~VVG 166 (415)
. +.++++++. ..||+||||||+ .|+.|++||.+ ++++...+.. .+... +..+++|+|||
T Consensus 86 ~~id~~~~~v~~~~g~~~~yd~lvlAtG~-~p~~p~i~G~~--~v~~~~~~~d~~~l~~~---------l~~~~~vvVIG 153 (385)
T 3klj_A 86 TSIDPNNKLVTLKSGEKIKYEKLIIASGS-IANKIKVPHAD--EIFSLYSYDDALKIKDE---------CKNKGKAFIIG 153 (385)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCE-EECCCCCTTCS--CEECCSSHHHHHHHHHH---------HHHHSCEEEEC
T ss_pred EEEECCCCEEEECCCCEEECCEEEEecCC-CcCCCCCCCCC--CeEEeCCHHHHHHHHHH---------hhcCCeEEEEC
Confidence 2 245555553 589999999999 78888999987 6665433222 11110 11378999999
Q ss_pred CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCC
Q 014990 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSP 246 (415)
Q Consensus 167 ~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p 246 (415)
+|.+|+|+|..|.+ .+ .+|+++.|++.+.....++++
T Consensus 154 gG~~g~E~A~~l~~--------------------~g-~~Vtvv~~~~~~l~~~~~~~~---------------------- 190 (385)
T 3klj_A 154 GGILGIELAQAIID--------------------SG-TPASIGIILEYPLERQLDRDG---------------------- 190 (385)
T ss_dssp CSHHHHHHHHHHHH--------------------HT-CCEEEECSSSSSCTTTSCHHH----------------------
T ss_pred CCHHHHHHHHHHHh--------------------CC-CeEEEEEcCCccchhhcCHHH----------------------
Confidence 99999999999986 23 589999998765332222211
Q ss_pred CcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceecc
Q 014990 247 TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG 326 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~ 326 (415)
...+.+.+. +.||+++++..+.++
T Consensus 191 -----------~~~~~~~l~-------------~~gV~~~~~~~v~~i-------------------------------- 214 (385)
T 3klj_A 191 -----------GLFLKDKLD-------------RLGIKIYTNSNFEEM-------------------------------- 214 (385)
T ss_dssp -----------HHHHHHHHH-------------TTTCEEECSCCGGGC--------------------------------
T ss_pred -----------HHHHHHHHH-------------hCCCEEEeCCEEEEc--------------------------------
Confidence 111222222 557887776544332
Q ss_pred CCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---ccchhhhhhh
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYC 403 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~---~~~~~~a~~~ 403 (415)
+++++||+||+|+|++|+. ++....++..+ +| +.+|++ ++|+.|+|||+|||+..+ .+....|+.|
T Consensus 215 ---g~~~~~D~vv~a~G~~p~~----~~~~~~gl~~~-~g-i~vd~~--~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~q 283 (385)
T 3klj_A 215 ---GDLIRSSCVITAVGVKPNL----DFIKDTEIASK-RG-ILVNDH--METSIKDIYACGDVAEFYGKNPGLINIANKQ 283 (385)
T ss_dssp ---HHHHHHSEEEECCCEEECC----GGGTTSCCCBS-SS-EEECTT--CBCSSTTEEECGGGEEETTBCCCCHHHHHHH
T ss_pred ---CeEEecCeEEECcCcccCh----hhhhhcCCCcC-CC-EEECCC--cccCCCCEEEEEeeEecCCCcccHHHHHHHH
Confidence 1158899999999999975 45566677765 46 889986 899999999999998522 3445689999
Q ss_pred HHHHHhhccc
Q 014990 404 AEETVSSLSL 413 (415)
Q Consensus 404 g~~~a~~i~~ 413 (415)
|+.||.+|..
T Consensus 284 g~~aa~~i~g 293 (385)
T 3klj_A 284 GEVAGLNACG 293 (385)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 9999999874
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=259.34 Aligned_cols=288 Identities=14% Similarity=0.210 Sum_probs=196.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC--------------------------------CC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--------------------------------VA 65 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~--------------------------------~~ 65 (415)
..++|+|||||+||+++|..|++.| .+|+|||+.+.+||...++ +.
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 79 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLG--LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS 79 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCC--CEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 5689999999999999999999999 9999999987433322111 10
Q ss_pred CC--CcchHH-----------HHHHHHHHhhccCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCC
Q 014990 66 PD--HPETKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALG 124 (415)
Q Consensus 66 ~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~ 124 (415)
.. ...... +...+...++..+++++.+.... ..+...++ ...||+||+|||+ .|..|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~-~p~~~~ 158 (476)
T 3lad_A 80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGS-KPVEIP 158 (476)
T ss_dssp CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCE-EECCCT
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCC-CCCCCC
Confidence 00 000111 11122344556688888776542 12333333 3589999999999 666666
Q ss_pred CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc
Q 014990 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (415)
Q Consensus 125 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (415)
.++.+...++++.++.. . ...+++|+|||+|++|+|+|..|.+ .+ .
T Consensus 159 ~~~~~~~~v~~~~~~~~----~---------~~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~ 204 (476)
T 3lad_A 159 PAPVDQDVIVDSTGALD----F---------QNVPGKLGVIGAGVIGLELGSVWAR--------------------LG-A 204 (476)
T ss_dssp TSCCCSSSEEEHHHHTS----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-C
T ss_pred CCCCCcccEEechhhhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 66666667777655432 1 1157899999999999999999986 34 5
Q ss_pred eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEE
Q 014990 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (415)
Q Consensus 205 ~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 284 (415)
+|+++.|++.+...+.. .+...+.+.+. +.||+
T Consensus 205 ~Vtlv~~~~~~l~~~~~----------------------------------~~~~~l~~~l~-------------~~Gv~ 237 (476)
T 3lad_A 205 EVTVLEAMDKFLPAVDE----------------------------------QVAKEAQKILT-------------KQGLK 237 (476)
T ss_dssp EEEEEESSSSSSTTSCH----------------------------------HHHHHHHHHHH-------------HTTEE
T ss_pred cEEEEecCCCcCcccCH----------------------------------HHHHHHHHHHH-------------hCCCE
Confidence 89999998754321111 11112222332 56899
Q ss_pred EEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccC
Q 014990 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (415)
Q Consensus 285 ~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~ 364 (415)
++++..+.++. . +++.+ .+.+.+. .| .+++++|.||+|+|++|+.. .+ .....++.+++
T Consensus 238 v~~~~~v~~i~--~-~~~~~-~v~~~~~--------------~g-~~~~~~D~vi~a~G~~p~~~-~l-~~~~~g~~~~~ 296 (476)
T 3lad_A 238 ILLGARVTGTE--V-KNKQV-TVKFVDA--------------EG-EKSQAFDKLIVAVGRRPVTT-DL-LAADSGVTLDE 296 (476)
T ss_dssp EEETCEEEEEE--E-CSSCE-EEEEESS--------------SE-EEEEEESEEEECSCEEECCT-TC-CSSCCSCCBCT
T ss_pred EEECCEEEEEE--E-cCCEE-EEEEEeC--------------CC-cEEEECCEEEEeeCCcccCC-CC-CccccCccccC
Confidence 99999999886 3 23332 3444320 22 35899999999999999762 11 24567888888
Q ss_pred CCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 365 ~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|++.+|+. ++|+.|||||+|||+.++. ....|+.||+.+|.+|..
T Consensus 297 ~G~i~vd~~--~~t~~~~Iya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 342 (476)
T 3lad_A 297 RGFIYVDDY--CATSVPGVYAIGDVVRGAM-LAHKASEEGVVVAERIAG 342 (476)
T ss_dssp TSCBCCCTT--SBCSSTTEEECGGGSSSCC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCEeeCCC--cccCCCCEEEEEccCCCcc-cHHHHHHHHHHHHHHhcC
Confidence 999999987 7899999999999986555 455799999999999864
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=267.26 Aligned_cols=285 Identities=15% Similarity=0.166 Sum_probs=193.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCC-------------------C-------cch
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD-------------------H-------PET 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~-------------------~-------~~~ 71 (415)
.++|+|||||+||+++|..|++.| .+|+|||+. .+||... .+..|. + ...
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G--~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLG--LSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY 79 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence 468999999999999999999999 999999998 4554321 110010 0 001
Q ss_pred HH-----------HHHHHHHHhhccCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCCCCCCC
Q 014990 72 KI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDLIG 132 (415)
Q Consensus 72 ~~-----------~~~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~~~ 132 (415)
.. +...+.+.+++.+++++.++.+. ..+...++ ...||+||+|||+ .|+.|+++|.+..
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~-~~~~~~~~g~~~~- 157 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGS-STRLVPGTSLSAN- 157 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCE-EECCCTTCCCBTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCC-CCCCCCCCCCCce-
Confidence 11 11223455666789888776541 12333333 3579999999999 6777788886543
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+.+..++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|+
T Consensus 158 ~~~~~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~ 203 (464)
T 2a8x_A 158 VVTYEEQIL----S---------RELPKSIIIAGAGAIGMEFGYVLKN--------------------YG-VDVTIVEFL 203 (464)
T ss_dssp EECHHHHHT----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSS
T ss_pred EEecHHHhh----c---------cccCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEEcC
Confidence 555444331 1 0147899999999999999999986 34 589999998
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+...+ +++ +...+.+.+. +.||+++++..+.
T Consensus 204 ~~~l~~~-~~~---------------------------------~~~~l~~~l~-------------~~gv~i~~~~~v~ 236 (464)
T 2a8x_A 204 PRALPNE-DAD---------------------------------VSKEIEKQFK-------------KLGVTILTATKVE 236 (464)
T ss_dssp SSSSTTS-CHH---------------------------------HHHHHHHHHH-------------HHTCEEECSCEEE
T ss_pred Ccccccc-CHH---------------------------------HHHHHHHHHH-------------HcCCEEEeCcEEE
Confidence 7542211 111 1112223332 5689999999998
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . +++.+ .+.+.. +|+.+++++|.||+|+|++|+. ..+. ....|+.++++|++.+|+
T Consensus 237 ~i~--~-~~~~~-~v~~~~---------------~g~~~~~~~D~vv~a~G~~p~~-~~l~-~~~~gl~~~~~G~i~vd~ 295 (464)
T 2a8x_A 237 SIA--D-GGSQV-TVTVTK---------------DGVAQELKAEKVLQAIGFAPNV-EGYG-LDKAGVALTDRKAIGVDD 295 (464)
T ss_dssp EEE--E-CSSCE-EEEEES---------------SSCEEEEEESEEEECSCEEECC-SSSC-HHHHTCCBCTTSSBCCCT
T ss_pred EEE--E-cCCeE-EEEEEc---------------CCceEEEEcCEEEECCCCCccC-CCCC-chhcCCccCCCCCEeECc
Confidence 886 3 22222 233321 3444589999999999999975 1111 244567778789999998
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 296 ~--~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 296 Y--MRTNVGHIYAIGDVNGLLQ-LAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp T--SBCSSTTEEECGGGGCSSC-SHHHHHHHHHHHHHHHHT
T ss_pred C--CccCCCCEEEeECcCCCcc-CHHHHHHHHHHHHHHhcC
Confidence 7 7899999999999986554 455799999999999864
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=250.54 Aligned_cols=310 Identities=14% Similarity=0.122 Sum_probs=186.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-------------CCC---------CcchHHHHH
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------------APD---------HPETKIVIN 76 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-------------~~~---------~~~~~~~~~ 76 (415)
.++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.+.. .+. +....++..
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSG--LSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA 80 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSS--CCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence 478999999999999999999999 99999999988887654311 011 112256777
Q ss_pred HHHHHhhccCeEEEeceEece--------E-EEecccccccCEEEEccCC-CCCCCCCCCCCCC--CCeeechhhHHHhc
Q 014990 77 QFSRVVQHERCSFFGNVTLGS--------S-VSLSELRQLYHVVVLAYGA-ESDRALGIPGEDL--IGVHSAREFVWWYN 144 (415)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~--------~-v~~~~~~~~~d~lvlAtG~-~~~~~~~i~g~~~--~~v~~~~~~~~~~~ 144 (415)
++.+.++..+++++.++.+.. . ++.++....||+||+|||+ ..+..|++||.+. ....+...+...
T Consensus 81 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-- 158 (357)
T 4a9w_A 81 YLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP-- 158 (357)
T ss_dssp HHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCS--
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCCh--
Confidence 888888888888888765521 2 4445555689999999997 3566788888652 123333222210
Q ss_pred CCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC-cccCCC-CHH
Q 014990 145 GHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG-PVQAAC-TAK 222 (415)
Q Consensus 145 ~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~-~~~~~~-~~~ 222 (415)
....+++|+|||+|.+|+|+|..|.+ .+ +|+++.|+. .+.... ...
T Consensus 159 ----------~~~~~~~v~VvG~G~~g~e~a~~l~~--------------------~~--~v~~v~~~~~~~~~~~~~~~ 206 (357)
T 4a9w_A 159 ----------APFAGMRVAIIGGGNSGAQILAEVST--------------------VA--ETTWITQHEPAFLADDVDGR 206 (357)
T ss_dssp ----------GGGTTSEEEEECCSHHHHHHHHHHTT--------------------TS--EEEEECSSCCCBCCTTCCTH
T ss_pred ----------hhcCCCEEEEECCCcCHHHHHHHHHh--------------------hC--CEEEEECCCCeecchhhcCc
Confidence 11268999999999999999999996 34 599999884 321111 111
Q ss_pred HHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCC
Q 014990 223 ELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG 302 (415)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 302 (415)
.+.+.+... +. ......+...+. .......+.....+.+ ..++ +.....+.++. . +
T Consensus 207 ~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~g~-i~~~~~v~~~~--~--~- 262 (357)
T 4a9w_A 207 VLFERATER-WK-AQQEGREPDLPP--GGFGDIVMVPPVLDAR--------------ARGV-LAAVPPPARFS--P--T- 262 (357)
T ss_dssp HHHTC--------------------------CBCCCHHHHHHH--------------HTTC-CCEECCCSEEE--T--T-
T ss_pred cHHHHHHHH-Hh-ccccccCCCccc--ccccCcccChhHHHHH--------------hcCc-eEEecCcceEe--C--C-
Confidence 111100000 00 000000000000 0000000000000000 0111 11122222221 0 0
Q ss_pred CeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCC
Q 014990 303 HVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENG 382 (415)
Q Consensus 303 ~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~ 382 (415)
.+. ..++++++||+||||+|++|+. +|....++. +++|++.+|+.+.++|+.||
T Consensus 263 ---~v~------------------~~~g~~i~~D~vi~a~G~~p~~----~~l~~~gl~-~~~G~i~vd~~~l~~t~~~~ 316 (357)
T 4a9w_A 263 ---GMQ------------------WADGTERAFDAVIWCTGFRPAL----SHLKGLDLV-TPQGQVEVDGSGLRALAVPS 316 (357)
T ss_dssp ---EEE------------------CTTSCEEECSEEEECCCBCCCC----GGGTTTTCB-CTTSCBCBCTTSCBBSSCTT
T ss_pred ---eeE------------------ECCCCEecCCEEEECCCcCCCC----cccCccccc-CCCCCccccCCcccCCCCCC
Confidence 111 1122479999999999999975 466677777 77899999997227899999
Q ss_pred eeeee--ccccCCccchhhhhhhHHHHHhhcccc
Q 014990 383 LYVCG--WLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 383 vfaiG--D~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|||+| ||+.........|+.||+.+|.+|.+.
T Consensus 317 vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~ 350 (357)
T 4a9w_A 317 VWLLGYGDWNGMASATLIGVTRYAREAVRQVTAY 350 (357)
T ss_dssp EEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHH
T ss_pred eEEeccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 99999 666533444447999999999998764
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-32 Score=278.52 Aligned_cols=320 Identities=14% Similarity=0.131 Sum_probs=192.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCcchHHHHHHHHHHh--hccCeEEEec
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETKIVINQFSRVV--QHERCSFFGN 92 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 92 (415)
.+.+++|||||||+||+++|..|++.+ ++|+|||+++++.- .+.+.+..+...+.++..++.... +..+++|+.+
T Consensus 39 ~~~KprVVIIGgG~AGl~~A~~L~~~~--~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~ 116 (502)
T 4g6h_A 39 HSDKPNVLILGSGWGAISFLKHIDTKK--YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA 116 (502)
T ss_dssp SCSSCEEEEECSSHHHHHHHHHSCTTT--CEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE
T ss_pred CCCCCCEEEECCcHHHHHHHHHhhhCC--CcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE
Confidence 446789999999999999999999887 99999999976322 222333233333333333333332 3446888776
Q ss_pred eEece-----EEEec---------------------ccccccCEEEEccCCCCCCCCCCCCCC-----CCCeeechhhHH
Q 014990 93 VTLGS-----SVSLS---------------------ELRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVW 141 (415)
Q Consensus 93 ~~v~~-----~v~~~---------------------~~~~~~d~lvlAtG~~~~~~~~i~g~~-----~~~v~~~~~~~~ 141 (415)
..... .++++ ..+..||+||||||+ .+..+++||.+ ...+.++..+..
T Consensus 117 ~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs-~~~~~~ipG~~e~a~~l~t~~dA~~ir~ 195 (502)
T 4g6h_A 117 EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGA-EPNTFGIPGVTDYGHFLKEIPNSLEIRR 195 (502)
T ss_dssp EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCC-EECCTTCTTHHHHCEECSSHHHHHHHHH
T ss_pred EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCc-ccccCCccCcccccCCCCCHHHHHHHHH
Confidence 55422 23221 123479999999999 78888999964 222223333322
Q ss_pred HhcCCCCC----CCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccC
Q 014990 142 WYNGHPDG----KNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (415)
Q Consensus 142 ~~~~~~~~----~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~ 217 (415)
.+....+. ....+......+++|||+|++|+|+|.+|.+... ..+..+. ... ....+|+++.+.+.+..
T Consensus 196 ~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~----~~l~~~~-~~~--~~~~~V~lve~~~~il~ 268 (502)
T 4g6h_A 196 TFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVH----QDLRKFL-PAL--AEEVQIHLVEALPIVLN 268 (502)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHH----HTHHHHC-HHH--HHHCEEEEECSSSSSST
T ss_pred HHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHH----HHHHhhc-ccc--cccceeEEecccccccc
Confidence 22100000 0000000123589999999999999999985110 0000000 000 01247999988876533
Q ss_pred CCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccccc
Q 014990 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (415)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 297 (415)
.+.. .+.....+.|. +.||+++++..+.++.
T Consensus 269 ~~~~----------------------------------~~~~~~~~~L~-------------~~GV~v~~~~~v~~v~-- 299 (502)
T 4g6h_A 269 MFEK----------------------------------KLSSYAQSHLE-------------NTSIKVHLRTAVAKVE-- 299 (502)
T ss_dssp TSCH----------------------------------HHHHHHHHHHH-------------HTTCEEETTEEEEEEC--
T ss_pred CCCH----------------------------------HHHHHHHHHHH-------------hcceeeecCceEEEEe--
Confidence 2221 12222333333 6689999999998885
Q ss_pred CCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCC
Q 014990 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (415)
Q Consensus 298 ~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~ 377 (415)
. ++ +.+.... .+| ...++++++|+||||+|.+|++... .+....+...+.+|++.||++ ++
T Consensus 300 ~--~~----~~~~~~~----~dg------~~~~~~i~ad~viwa~Gv~~~~~~~-~l~~~~~~~~~~~g~I~Vd~~--lq 360 (502)
T 4g6h_A 300 E--KQ----LLAKTKH----EDG------KITEETIPYGTLIWATGNKARPVIT-DLFKKIPEQNSSKRGLAVNDF--LQ 360 (502)
T ss_dssp S--SE----EEEEEEC----TTS------CEEEEEEECSEEEECCCEECCHHHH-HHHHHSGGGTTCCSSEEBCTT--SB
T ss_pred C--Cc----eEEEEEe----cCc------ccceeeeccCEEEEccCCcCCHHHH-hHHHhccccccCCCceeECCc--cc
Confidence 2 32 2222110 011 1234589999999999999974210 122233455677799999987 55
Q ss_pred c-ccCCeeeeeccccCC-ccchhhhhhhHHHHHhhccc
Q 014990 378 Q-VENGLYVCGWLKRGP-TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 378 t-~~p~vfaiGD~~~~~-~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ++|||||+|||+..+ ......|+.||+.+|+||.+
T Consensus 361 ~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 361 VKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp BTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHH
Confidence 5 899999999998533 34556799999999999864
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=263.21 Aligned_cols=289 Identities=23% Similarity=0.296 Sum_probs=192.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc--------------------------cCCCCCCc-
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR--------------------------SGVAPDHP- 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~--------------------------~~~~~~~~- 69 (415)
+..++|+||||||||+++|..|++.| .+|+|||+.+.+||.+. +++.....
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPK 100 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCE
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCc
Confidence 34689999999999999999999999 99999999988887422 11100000
Q ss_pred -chHH-----------HHHHHHHHhhccCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCCCC
Q 014990 70 -ETKI-----------VINQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGED 129 (415)
Q Consensus 70 -~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~ 129 (415)
.... +...+...++..+++++.+.... ..+...++ ...||+||||||+. | +++||.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~-p--~~ipg~~ 177 (491)
T 3urh_A 101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSD-V--AGIPGVE 177 (491)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEE-C--CCBTTBC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCC-C--CCCCCcc
Confidence 0111 11123344566788887776541 12333332 35799999999984 3 4566654
Q ss_pred ----CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcce
Q 014990 130 ----LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRK 205 (415)
Q Consensus 130 ----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (415)
...++++.+... . ...+++|+|||+|.+|+|+|..|.+ .+ .+
T Consensus 178 ~~~~~~~~~~~~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~ 223 (491)
T 3urh_A 178 VAFDEKTIVSSTGALA----L---------EKVPASMIVVGGGVIGLELGSVWAR--------------------LG-AK 223 (491)
T ss_dssp CCCCSSSEECHHHHTS----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------HT-CE
T ss_pred cccCCeeEEehhHhhh----h---------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CE
Confidence 233444332221 1 1257999999999999999999986 34 58
Q ss_pred EEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEE
Q 014990 206 VYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHF 285 (415)
Q Consensus 206 v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 285 (415)
|+++.+++.+...+.. + +...+.+.+. +.||++
T Consensus 224 Vtlv~~~~~~l~~~d~-~---------------------------------~~~~l~~~l~-------------~~gV~v 256 (491)
T 3urh_A 224 VTVVEFLDTILGGMDG-E---------------------------------VAKQLQRMLT-------------KQGIDF 256 (491)
T ss_dssp EEEECSSSSSSSSSCH-H---------------------------------HHHHHHHHHH-------------HTTCEE
T ss_pred EEEEeccccccccCCH-H---------------------------------HHHHHHHHHH-------------hCCCEE
Confidence 9999988754322111 1 1112222232 568999
Q ss_pred EeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCC
Q 014990 286 VFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIR 365 (415)
Q Consensus 286 ~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~ 365 (415)
+++..+.++. . ++....+.+.+. .+|+.+++++|.||+|+|++|+. ..+. ....++.++++
T Consensus 257 ~~~~~v~~i~--~--~~~~~~v~~~~~-------------~~g~~~~i~~D~Vi~a~G~~p~~-~~l~-l~~~g~~~~~~ 317 (491)
T 3urh_A 257 KLGAKVTGAV--K--SGDGAKVTFEPV-------------KGGEATTLDAEVVLIATGRKPST-DGLG-LAKAGVVLDSR 317 (491)
T ss_dssp ECSEEEEEEE--E--ETTEEEEEEEET-------------TSCCCEEEEESEEEECCCCEECC-TTSC-HHHHTCCBCTT
T ss_pred EECCeEEEEE--E--eCCEEEEEEEec-------------CCCceEEEEcCEEEEeeCCccCC-CccC-chhcCceECCC
Confidence 9999888886 3 332223444331 02444689999999999999975 2111 23456778888
Q ss_pred CceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 366 GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 366 G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++.+|+. ++|+.|||||+|||+.++. ....|+.||+.+|.+|..
T Consensus 318 G~i~vd~~--~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~g 362 (491)
T 3urh_A 318 GRVEIDRH--FQTSIAGVYAIGDVVRGPM-LAHKAEDEGVAVAEIIAG 362 (491)
T ss_dssp SCBCCCTT--CBCSSTTEEECGGGSSSCC-CHHHHHHHHHHHHHHHTT
T ss_pred CCEeECCC--CCCCCCCEEEEEecCCCcc-chhHHHHHHHHHHHHHcC
Confidence 99999987 8899999999999986664 455799999999999864
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=262.20 Aligned_cols=287 Identities=14% Similarity=0.178 Sum_probs=194.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC---CCCCc---chHHHHHHHHHHhhccCeEEEece
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDHP---ETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
++|+|||||+||+++|..|++.+++.+|+|||+++.++... .++ ..+.. .+.++.....+.+++.+++++.+.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 79 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLS-CGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRH 79 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCG-GGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccc-ccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCC
Confidence 58999999999999999999994449999999988654321 110 00110 122222222334556688887776
Q ss_pred Eec------eEEEecc------cccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHH--hcCCCCCCCCCCCCCCC
Q 014990 94 TLG------SSVSLSE------LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKST 159 (415)
Q Consensus 94 ~v~------~~v~~~~------~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~ 159 (415)
.+. ..+.+.+ ....||+||+|||+ .|+.|++||.+.+++++...+... +... ...+
T Consensus 80 ~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~---------~~~~ 149 (452)
T 2cdu_A 80 QVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGS-KPTVPPIPGIDSSRVYLCKNYNDAKKLFEE---------APKA 149 (452)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTTTSTTEEECSSHHHHHHHHHH---------GGGC
T ss_pred EEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCC-CcCCCCCCCCCCCCEEEeCcHHHHHHHHHH---------hccC
Confidence 542 2233322 23589999999998 788889999887777765433221 1100 1257
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 239 (415)
++|+|||+|.+|+|+|..|.+ .+ .+|+++.+++.+.....++++
T Consensus 150 ~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~~~--------------- 193 (452)
T 2cdu_A 150 KTITIIGSGYIGAELAEAYSN--------------------QN-YNVNLIDGHERVLYKYFDKEF--------------- 193 (452)
T ss_dssp SEEEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESSSSTTTTTSCHHH---------------
T ss_pred CeEEEECcCHHHHHHHHHHHh--------------------cC-CEEEEEEcCCchhhhhhhhhH---------------
Confidence 999999999999999999986 34 589999998754321122111
Q ss_pred cccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCC
Q 014990 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (415)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~ 319 (415)
...+.+.+. +.||+++++..+.++. . .++.+..+..
T Consensus 194 ------------------~~~l~~~l~-------------~~Gv~i~~~~~v~~i~--~-~~~~v~~v~~---------- 229 (452)
T 2cdu_A 194 ------------------TDILAKDYE-------------AHGVNLVLGSKVAAFE--E-VDDEIITKTL---------- 229 (452)
T ss_dssp ------------------HHHHHHHHH-------------HTTCEEEESSCEEEEE--E-ETTEEEEEET----------
T ss_pred ------------------HHHHHHHHH-------------HCCCEEEcCCeeEEEE--c-CCCeEEEEEe----------
Confidence 112222332 5689999999998886 3 2443322211
Q ss_pred CcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC------
Q 014990 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP------ 393 (415)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~------ 393 (415)
+| +++++|.||+|+|++|+. ++.+.. +.++++|++.+|++ ++|+.|||||+|||+..+
T Consensus 230 -------~g--~~i~~D~vv~a~G~~p~~----~ll~~~-l~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~g~ 293 (452)
T 2cdu_A 230 -------DG--KEIKSDIAILCIGFRPNT----ELLKGK-VAMLDNGAIITDEY--MHSSNRDIFAAGDSAAVHYNPTNS 293 (452)
T ss_dssp -------TS--CEEEESEEEECCCEEECC----GGGTTT-SCBCTTSCBCCCTT--SBCSSTTEEECSTTBCEEETTTTE
T ss_pred -------CC--CEEECCEEEECcCCCCCH----HHHHHh-hhcCCCCCEEECCC--cCcCCCCEEEcceEEEeccccCCC
Confidence 22 379999999999999976 344444 66778899999997 889999999999998632
Q ss_pred ---ccchhhhhhhHHHHHhhccc
Q 014990 394 ---TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 ---~~~~~~a~~~g~~~a~~i~~ 413 (415)
......|+.||+.+|.+|..
T Consensus 294 ~~~~~~~~~A~~~g~~aa~~i~g 316 (452)
T 2cdu_A 294 NAYIPLATNAVRQGRLVGLNLTE 316 (452)
T ss_dssp EECCCCHHHHHHHHHHHHHTSSS
T ss_pred eeecchHHHHHHHHHHHHHHhCC
Confidence 13456899999999999874
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=264.95 Aligned_cols=292 Identities=17% Similarity=0.160 Sum_probs=186.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC---CCCC-cchHH-------HHHHHHHHhhccCe
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH-PETKI-------VINQFSRVVQHERC 87 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~---~~~~-~~~~~-------~~~~~~~~~~~~~~ 87 (415)
+++|+|||||+||+++|..|++.+++.+|+|||+++.++.. ..+. ..+. ....+ +..+...+.+..++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~-~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi 81 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYG-GCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDV 81 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--------------------------------------------C
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccc-ccccchhhcCCCCchHHhccccchhccCHHHHhhhcCc
Confidence 57999999999999999999999555999999999875421 1111 0111 11111 23334444445678
Q ss_pred EEEeceEece------EEEecc---c---ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCC
Q 014990 88 SFFGNVTLGS------SVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLS 153 (415)
Q Consensus 88 ~~~~~~~v~~------~v~~~~---~---~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~ 153 (415)
.++.+..+.. .+.+.. + ...||+||+|||+ .|+.|++||.+.+++++...... .+.....
T Consensus 82 ~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~----- 155 (472)
T 3iwa_A 82 EALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS-KANRPPVEGMDLAGVTPVTNLDEAEFVQHAIS----- 155 (472)
T ss_dssp EEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCSCTTTTSBTEEECCSHHHHHHHHHHCC-----
T ss_pred EEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC-CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh-----
Confidence 8877766522 233322 2 3479999999999 78888999988777766443221 1211000
Q ss_pred CCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCe
Q 014990 154 PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNL 233 (415)
Q Consensus 154 ~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~ 233 (415)
...+++|+|||+|.+|+|+|..|.+ ....+|+++.|++.+.....++++
T Consensus 156 --~~~~~~vvViGgG~~g~e~A~~l~~--------------------~~g~~Vtlv~~~~~~l~~~~~~~~--------- 204 (472)
T 3iwa_A 156 --AGEVSKAVIVGGGFIGLEMAVSLAD--------------------MWGIDTTVVELADQIMPGFTSKSL--------- 204 (472)
T ss_dssp --TTSCSEEEEECCSHHHHHHHHHHHH--------------------HHCCEEEEECSSSSSSTTTSCHHH---------
T ss_pred --cCCCCEEEEECCCHHHHHHHHHHHH--------------------hcCCcEEEEEccCcccccccCHHH---------
Confidence 0147999999999999999999985 303589999998754321111111
Q ss_pred eEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeee
Q 014990 234 YVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313 (415)
Q Consensus 234 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~ 313 (415)
...+.+.+. +.||+++++..+.++. . +++.+. +.+.
T Consensus 205 ------------------------~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~-~~~~v~-v~~~--- 240 (472)
T 3iwa_A 205 ------------------------SQMLRHDLE-------------KNDVVVHTGEKVVRLE--G-ENGKVA-RVIT--- 240 (472)
T ss_dssp ------------------------HHHHHHHHH-------------HTTCEEECSCCEEEEE--E-SSSBEE-EEEE---
T ss_pred ------------------------HHHHHHHHH-------------hcCCEEEeCCEEEEEE--c-cCCeEE-EEEe---
Confidence 112222332 5689999999999886 3 344443 3332
Q ss_pred ecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC
Q 014990 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP 393 (415)
Q Consensus 314 ~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~ 393 (415)
+|+ +++||.||+|+|++|+. ++....|+.++++|++.+|+. ++|+.|||||+|||+..+
T Consensus 241 -------------~g~--~i~aD~Vv~a~G~~p~~----~l~~~~gl~~~~~g~i~vd~~--~~t~~~~Iya~GD~~~~~ 299 (472)
T 3iwa_A 241 -------------DKR--TLDADLVILAAGVSPNT----QLARDAGLELDPRGAIIVDTR--MRTSDPDIFAGGDCVTIP 299 (472)
T ss_dssp -------------SSC--EEECSEEEECSCEEECC----HHHHHHTCCBCTTCCEECCTT--CBCSSTTEEECGGGEEEE
T ss_pred -------------CCC--EEEcCEEEECCCCCcCH----HHHHhCCccCCCCCCEEECCC--cccCCCCEEEeccceecc
Confidence 232 79999999999999975 344456778888899999987 889999999999998321
Q ss_pred ---------ccchhhhhhhHHHHHhhccc
Q 014990 394 ---------TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 ---------~~~~~~a~~~g~~~a~~i~~ 413 (415)
......|+.||+.+|.+|..
T Consensus 300 ~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 328 (472)
T 3iwa_A 300 NLVTGKPGFFPLGSMANRQGRVIGTNLAD 328 (472)
T ss_dssp BTTTSSEECCCCTTHHHHHHHHHHHHHTT
T ss_pred cccCCceeecchHHHHHHHHHHHHHHhcC
Confidence 12344699999999999864
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=258.89 Aligned_cols=288 Identities=16% Similarity=0.228 Sum_probs=194.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC----CCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV----APDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
++|+|||||+||+++|..|++.+++.+|+|||+++..+.. ..+. ........++.....+.+++.+++++.+..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 79 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-SAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI 79 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-GGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-cccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence 5899999999999999999998444999999999876522 1110 0011112222222233445568888777665
Q ss_pred c------eEEEecc---c---ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHH--hcCCCCCCCCCCCCCCCCe
Q 014990 96 G------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDT 161 (415)
Q Consensus 96 ~------~~v~~~~---~---~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~ 161 (415)
. ..+.+.. + ...||+||+|||+ .|+.|++||.+.+++++...+... +..... ...+++
T Consensus 80 ~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~-------~~~~~~ 151 (447)
T 1nhp_A 80 TAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA-VPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV-------DPEVNN 151 (447)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCSTTTTSBSEECCCHHHHHHHHHHHHT-------CTTCCE
T ss_pred EEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCC-CcCCCCCCCCCCCCeEEECCHHHHHHHHHHhh-------hcCCCe
Confidence 2 2344432 2 2579999999999 688889999887777765443221 110000 015799
Q ss_pred EEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccc
Q 014990 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (415)
Q Consensus 162 V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (415)
|+|||+|++|+|+|..|.+ .+ .+|+++.+++.+...+.++++
T Consensus 152 vvIiG~G~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~~~----------------- 193 (447)
T 1nhp_A 152 VVVIGSGYIGIEAAEAFAK--------------------AG-KKVTVIDILDRPLGVYLDKEF----------------- 193 (447)
T ss_dssp EEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTTTTCCHHH-----------------
T ss_pred EEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCcccccccCCHHH-----------------
Confidence 9999999999999999986 34 589999998654321111111
Q ss_pred cCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCc
Q 014990 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (415)
Q Consensus 242 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~ 321 (415)
...+.+.+. +.||+++++..+.++. . ++.+..+..
T Consensus 194 ----------------~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~--~~~v~~v~~------------ 228 (447)
T 1nhp_A 194 ----------------TDVLTEEME-------------ANNITIATGETVERYE--G--DGRVQKVVT------------ 228 (447)
T ss_dssp ----------------HHHHHHHHH-------------TTTEEEEESCCEEEEE--C--SSBCCEEEE------------
T ss_pred ----------------HHHHHHHHH-------------hCCCEEEcCCEEEEEE--c--cCcEEEEEE------------
Confidence 111222222 6689999999998886 4 344433322
Q ss_pred ceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC--------
Q 014990 322 QYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-------- 393 (415)
Q Consensus 322 ~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~-------- 393 (415)
++ .++++|.||+|+|++|+. ++.... +.++++|++.+|++ ++|+.|+|||+|||+..+
T Consensus 229 -----~~--~~i~~d~vi~a~G~~p~~----~~~~~~-~~~~~~G~i~Vd~~--~~t~~~~Iya~GD~~~~~~~~~g~~~ 294 (447)
T 1nhp_A 229 -----DK--NAYDADLVVVAVGVRPNT----AWLKGT-LELHPNGLIKTDEY--MRTSEPDVFAVGDATLIKYNPADTEV 294 (447)
T ss_dssp -----SS--CEEECSEEEECSCEEESC----GGGTTT-SCBCTTSCBCCCTT--CBCSSTTEEECGGGSCEEEGGGTEEE
T ss_pred -----CC--CEEECCEEEECcCCCCCh----HHHHhh-hhhcCCCcEEECcc--ccCCCCCEEEeeeEEEeeccCCCCce
Confidence 12 269999999999999975 343444 66677899999987 889999999999998522
Q ss_pred -ccchhhhhhhHHHHHhhccc
Q 014990 394 -TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 -~~~~~~a~~~g~~~a~~i~~ 413 (415)
......|+.||+.+|.+|..
T Consensus 295 ~~~~~~~A~~qg~~aa~~i~g 315 (447)
T 1nhp_A 295 NIALATNARKQGRFAVKNLEE 315 (447)
T ss_dssp CCCCHHHHHHHHHHHHHTSSS
T ss_pred echhHHHHHHHHHHHHHhhcC
Confidence 13455799999999999864
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=262.34 Aligned_cols=286 Identities=16% Similarity=0.159 Sum_probs=196.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-CCCCC---------------------CcchHHHH-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPD---------------------HPETKIVI- 75 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~~~~~---------------------~~~~~~~~- 75 (415)
.++|+||||||||+++|..|++.| .+|+|||+.+.+||.+.+ +..|. ......+.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G--~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAK--YNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD 81 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 479999999999999999999999 999999999888886432 11110 01111111
Q ss_pred -----------HHHHHHhhccCeEEEeceEec-----eEEEeccc-c--cccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 014990 76 -----------NQFSRVVQHERCSFFGNVTLG-----SSVSLSEL-R--QLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (415)
Q Consensus 76 -----------~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~-~--~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~ 136 (415)
..+...++..+++++.+.... ..+...++ . ..||+||+|||+ .|+.|++||.+ ++++.
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~--~~~t~ 158 (466)
T 3l8k_A 82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGA-ETAKLRLPGVE--YCLTS 158 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCE-EECCCCCTTGG--GSBCH
T ss_pred HHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCC-CccCCCCCCcc--ceEeH
Confidence 334455667788888775431 12333332 3 579999999999 78888999986 46665
Q ss_pred hhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCccc
Q 014990 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (415)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~ 216 (415)
.++....... ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|.+.+.
T Consensus 159 ~~~~~~~~~l---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l 208 (466)
T 3l8k_A 159 DDIFGYKTSF---------RKLPQDMVIIGAGYIGLEIASIFRL--------------------MG-VQTHIIEMLDRAL 208 (466)
T ss_dssp HHHHSTTCSC---------CSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSC
T ss_pred HHHHHHHHHH---------hhCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEEEeCCcCC
Confidence 5544211111 1147899999999999999999986 34 5899999987653
Q ss_pred CCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccc
Q 014990 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (415)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~ 296 (415)
..+.++++. +.+.+.. . |+++++..+.++.
T Consensus 209 ~~~~d~~~~-------------------------------------~~l~~~l----------~--v~i~~~~~v~~i~- 238 (466)
T 3l8k_A 209 ITLEDQDIV-------------------------------------NTLLSIL----------K--LNIKFNSPVTEVK- 238 (466)
T ss_dssp TTSCCHHHH-------------------------------------HHHHHHH----------C--CCEECSCCEEEEE-
T ss_pred CCCCCHHHH-------------------------------------HHHHhcC----------E--EEEEECCEEEEEE-
Confidence 322122211 1111111 2 8888888888886
Q ss_pred cCCCC-CCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 297 SNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 297 ~~~~~-~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. .+ +.+ .+.+.+ .+|+.+++++|.||+|+|++|+.. + .....|+.++++| +.+|++
T Consensus 239 -~-~~~~~v-~v~~~~--------------~~G~~~~i~~D~vi~a~G~~p~~~--l-~l~~~gl~~~~~G-i~vd~~-- 295 (466)
T 3l8k_A 239 -K-IKDDEY-EVIYST--------------KDGSKKSIFTNSVVLAAGRRPVIP--E-GAREIGLSISKTG-IVVDET-- 295 (466)
T ss_dssp -E-EETTEE-EEEECC--------------TTSCCEEEEESCEEECCCEEECCC--T-TTGGGTCCBCSSS-BCCCTT--
T ss_pred -E-cCCCcE-EEEEEe--------------cCCceEEEEcCEEEECcCCCcccc--c-chhhcCceeCCCC-EeECCC--
Confidence 3 22 332 233321 034445899999999999999762 2 1355678888899 999986
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 296 ~~t~~~~Iya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 332 (466)
T 3l8k_A 296 MKTNIPNVFATGDANGLAP-YYHAAVRMSIAAANNIMA 332 (466)
T ss_dssp CBCSSTTEEECGGGTCSCC-SHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEEecCCCCc-cHhHHHHHHHHHHHHHhC
Confidence 8999999999999986544 445799999999999874
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=256.84 Aligned_cols=291 Identities=16% Similarity=0.207 Sum_probs=195.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CCc-cccCCCCCCcchHHHHH-HHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGL-VRSGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 94 (415)
..++|+|||||+||+++|..|++.++..+|+|+|+++.. ... ......+......++.. .+...++..+++++.+..
T Consensus 3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 82 (384)
T 2v3a_A 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTR 82 (384)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEECSCC
T ss_pred CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEeCCE
Confidence 357899999999999999999999866789999987521 110 11111122222333322 234455667888887654
Q ss_pred ec------eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 014990 95 LG------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQG 168 (415)
Q Consensus 95 v~------~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G 168 (415)
+. +.+.+.+....||+||+|||+ .|+.|++||.+.+++++...+....... ..+..+++|+|||+|
T Consensus 83 v~~i~~~~~~v~~~~~~~~~d~lviAtG~-~p~~p~i~g~~~~~v~~~~~~~~~~~~~-------~~~~~~~~v~ViGgG 154 (384)
T 2v3a_A 83 VTGIDPGHQRIWIGEEEVRYRDLVLAWGA-EPIRVPVEGDAQDALYPINDLEDYARFR-------QAAAGKRRVLLLGAG 154 (384)
T ss_dssp CCEEEGGGTEEEETTEEEECSEEEECCCE-EECCCCCBSTTTTCEEECSSHHHHHHHH-------HHHTTCCEEEEECCS
T ss_pred EEEEECCCCEEEECCcEEECCEEEEeCCC-CcCCCCCCCcCcCCEEEECCHHHHHHHH-------HhhccCCeEEEECCC
Confidence 32 345554445689999999999 7888899998766777765554321100 001247999999999
Q ss_pred hhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCc
Q 014990 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (415)
Q Consensus 169 ~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 248 (415)
.+|+|+|..|.+ .+ .+|+++.+.+.+...+.++++
T Consensus 155 ~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~~~~~~~~~~------------------------ 189 (384)
T 2v3a_A 155 LIGCEFANDLSS--------------------GG-YQLDVVAPCEQVMPGLLHPAA------------------------ 189 (384)
T ss_dssp HHHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTSCHHH------------------------
T ss_pred HHHHHHHHHHHh--------------------CC-CeEEEEecCcchhhcccCHHH------------------------
Confidence 999999999986 34 589999988654322212111
Q ss_pred HHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCC
Q 014990 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (415)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g 328 (415)
...+.+.+. +.|++++++..+.++. . ++....+++. +|
T Consensus 190 ---------~~~l~~~l~-------------~~gv~i~~~~~v~~i~--~--~~~~~~v~~~----------------~g 227 (384)
T 2v3a_A 190 ---------AKAVQAGLE-------------GLGVRFHLGPVLASLK--K--AGEGLEAHLS----------------DG 227 (384)
T ss_dssp ---------HHHHHHHHH-------------TTTCEEEESCCEEEEE--E--ETTEEEEEET----------------TS
T ss_pred ---------HHHHHHHHH-------------HcCCEEEeCCEEEEEE--e--cCCEEEEEEC----------------CC
Confidence 111222222 5689999999888886 3 2222223221 23
Q ss_pred ceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc--CC-ccchhhhhhhHH
Q 014990 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR--GP-TGIIATNLYCAE 405 (415)
Q Consensus 329 ~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~--~~-~~~~~~a~~~g~ 405 (415)
+++++|.||+|+|++|+. ++....|+..+ +| +.+|++ ++|+.|||||+|||+. +. ......|+.||+
T Consensus 228 --~~i~~d~vv~a~G~~p~~----~l~~~~g~~~~-~g-i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~ 297 (384)
T 2v3a_A 228 --EVIPCDLVVSAVGLRPRT----ELAFAAGLAVN-RG-IVVDRS--LRTSHANIYALGDCAEVDGLNLLYVMPLMACAR 297 (384)
T ss_dssp --CEEEESEEEECSCEEECC----HHHHHTTCCBS-SS-EEECTT--CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHH
T ss_pred --CEEECCEEEECcCCCcCH----HHHHHCCCCCC-CC-EEECCC--CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHH
Confidence 379999999999999975 24455677776 57 999987 7899999999999984 22 223446899999
Q ss_pred HHHhhccc
Q 014990 406 ETVSSLSL 413 (415)
Q Consensus 406 ~~a~~i~~ 413 (415)
.+|.+|..
T Consensus 298 ~~a~~i~g 305 (384)
T 2v3a_A 298 ALAQTLAG 305 (384)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcC
Confidence 99999864
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-31 Score=265.75 Aligned_cols=289 Identities=16% Similarity=0.169 Sum_probs=193.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------cCCCCC--Ccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD--HPE 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~~~~~~--~~~ 70 (415)
..++|+||||||||+++|..|++.| .+|+|||+. .+||.+. +++... ...
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 95 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELG--ARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN 95 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 4689999999999999999999999 999999977 4554321 111110 001
Q ss_pred hH-----------HHHHHHHHHhhccCeEEEeceEec-----eEEEecccccccCEEEEccCCCCCCCC---CCCCCCCC
Q 014990 71 TK-----------IVINQFSRVVQHERCSFFGNVTLG-----SSVSLSELRQLYHVVVLAYGAESDRAL---GIPGEDLI 131 (415)
Q Consensus 71 ~~-----------~~~~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~~~~~d~lvlAtG~~~~~~~---~i~g~~~~ 131 (415)
.. .+...+...++..+++++.+.... ..+..+.....||+||||||+ .|+.| ++||.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~-~p~~p~~~~i~G~~-- 172 (478)
T 3dk9_A 96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGG-MPSTPHESQIPGAS-- 172 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCE-EECCCCTTTSTTGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCC-CCCCCCcCCCCCCc--
Confidence 11 111223445566788888776431 234433334689999999998 67777 888875
Q ss_pred CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEee
Q 014990 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (415)
Q Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r 211 (415)
...++..+.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|
T Consensus 173 ~~~~~~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~ 218 (478)
T 3dk9_A 173 LGITSDGFFQ----L---------EELPGRSVIVGAGYIAVEMAGILSA--------------------LG-SKTSLMIR 218 (478)
T ss_dssp GSBCHHHHTT----C---------CSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECS
T ss_pred eeEchHHhhc----h---------hhcCccEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEe
Confidence 2333333221 1 1147999999999999999999986 34 58999999
Q ss_pred cCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccc
Q 014990 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (415)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (415)
++.+...+.. . +...+.+.+. +.||+++++..+
T Consensus 219 ~~~~l~~~d~-----------------------------~-----~~~~~~~~l~-------------~~gv~i~~~~~v 251 (478)
T 3dk9_A 219 HDKVLRSFDS-----------------------------M-----ISTNCTEELE-------------NAGVEVLKFSQV 251 (478)
T ss_dssp SSSSCTTSCH-----------------------------H-----HHHHHHHHHH-------------HTTCEEETTEEE
T ss_pred CCccccccCH-----------------------------H-----HHHHHHHHHH-------------HCCCEEEeCCEE
Confidence 8754321111 1 1112223332 568999999988
Q ss_pred ccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCc--eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCcee
Q 014990 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE--FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (415)
Q Consensus 292 ~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~--~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~ 369 (415)
.++. ...++....+.+.+. ..++ +.++++|.||+|+|++|+.. .+. ....|+.++++|++.
T Consensus 252 ~~i~--~~~~~~~~~v~~~~~-------------~~g~~~g~~~~~D~vi~a~G~~p~~~-~l~-l~~~g~~~~~~G~i~ 314 (478)
T 3dk9_A 252 KEVK--KTLSGLEVSMVTAVP-------------GRLPVMTMIPDVDCLLWAIGRVPNTK-DLS-LNKLGIQTDDKGHII 314 (478)
T ss_dssp EEEE--ECSSSEEEEEEECCT-------------TSCCEEEEEEEESEEEECSCEEESCT-TSC-GGGGTCCBCTTCCBC
T ss_pred EEEE--EcCCCcEEEEEEccC-------------CCCcccceEEEcCEEEEeeccccCCC-CCC-chhcCCeeCCCCCEe
Confidence 8886 311221122333220 0122 36899999999999999762 121 345678888899999
Q ss_pred eccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 370 v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|++ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 315 vd~~--~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 355 (478)
T 3dk9_A 315 VDEF--QNTNVKGIYAVGDVCGKAL-LTPVAIAAGRKLAHRLFE 355 (478)
T ss_dssp CCTT--CBCSSTTEEECGGGGCSSC-CHHHHHHHHHHHHHHHHS
T ss_pred eCCC--cccCCCCEEEEEecCCCCc-cHhHHHHHHHHHHHHHcC
Confidence 9987 8999999999999985554 455799999999999864
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=260.34 Aligned_cols=289 Identities=18% Similarity=0.221 Sum_probs=194.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc--------------------------CCCC-C--Cc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--------------------------GVAP-D--HP 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~--------------------------~~~~-~--~~ 69 (415)
.++|+|||||+||+++|..|++.+ .+|+|||+.+.+||.+.. ++.. . ..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 82 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI 82 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 578999999999999999999998 999999998777764211 1100 0 00
Q ss_pred chHHHH-----------HHHHHHhhccCeEEEeceEec-----eEEEeccc---c------cccCEEEEccCCCCCCCCC
Q 014990 70 ETKIVI-----------NQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---R------QLYHVVVLAYGAESDRALG 124 (415)
Q Consensus 70 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~------~~~d~lvlAtG~~~~~~~~ 124 (415)
....+. ..+...++..+++++.++.+. ..+...++ . ..||+||+|||+ .|+ +
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs-~p~--~ 159 (478)
T 1v59_A 83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGS-EVT--P 159 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCE-EEC--C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCC-CCC--C
Confidence 111111 123345566789988877542 12333332 4 679999999999 342 3
Q ss_pred CCCCCCC--CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC
Q 014990 125 IPGEDLI--GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (415)
Q Consensus 125 i~g~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (415)
+||.+.. .+.++.++.. .. ..+++|+|||+|.+|+|+|..|.+ .+
T Consensus 160 ~~g~~~~~~~v~~~~~~~~----~~---------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g 206 (478)
T 1v59_A 160 FPGIEIDEEKIVSSTGALS----LK---------EIPKRLTIIGGGIIGLEMGSVYSR--------------------LG 206 (478)
T ss_dssp CTTCCCCSSSEECHHHHTT----CS---------SCCSEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CCCCCCCCceEEcHHHHHh----hh---------ccCceEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 4555433 3555443321 10 137999999999999999999986 34
Q ss_pred cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCcee
Q 014990 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (415)
Q Consensus 203 ~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (415)
.+|+++.|++.+...+. ++ +...+.+.+. +.|
T Consensus 207 -~~Vtlv~~~~~~l~~~~-~~---------------------------------~~~~l~~~l~-------------~~g 238 (478)
T 1v59_A 207 -SKVTVVEFQPQIGASMD-GE---------------------------------VAKATQKFLK-------------KQG 238 (478)
T ss_dssp -CEEEEECSSSSSSSSSC-HH---------------------------------HHHHHHHHHH-------------HTT
T ss_pred -CEEEEEEeCCccccccC-HH---------------------------------HHHHHHHHHH-------------HCC
Confidence 58999999875432111 11 1112222232 568
Q ss_pred EEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccc
Q 014990 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (415)
Q Consensus 283 v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~ 362 (415)
|+++++..+.++. .++++....+++.+. .+++++++++|.||+|+|++|+. ..+ +....|+.+
T Consensus 239 v~i~~~~~v~~i~--~~~~~~~~~v~~~~~-------------~~g~~~~~~~D~vv~a~G~~p~~-~~l-~l~~~g~~~ 301 (478)
T 1v59_A 239 LDFKLSTKVISAK--RNDDKNVVEIVVEDT-------------KTNKQENLEAEVLLVAVGRRPYI-AGL-GAEKIGLEV 301 (478)
T ss_dssp CEEECSEEEEEEE--EETTTTEEEEEEEET-------------TTTEEEEEEESEEEECSCEEECC-TTS-CTTTTTCCB
T ss_pred CEEEeCCEEEEEE--EecCCCeEEEEEEEc-------------CCCCceEEECCEEEECCCCCcCC-CCC-CchhcCcee
Confidence 9999999888886 200333334444321 13455689999999999999975 211 446678888
Q ss_pred cCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 363 ~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+++|++.+|+. ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 302 ~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 302 DKRGRLVIDDQ--FNSKFPHIKVVGDVTFGPM-LAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp CTTSCBCCCTT--SBCSSTTEEECGGGSSSCC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeECcC--CccCCCCEEEeeccCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 88899999987 7899999999999987554 455799999999999864
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=268.69 Aligned_cols=307 Identities=14% Similarity=0.158 Sum_probs=195.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCCc-chHHHHHHHHHHhhccCeEEEeceE
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP-ETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
++|+|||||+||+++|..|++.+++.+|+|||+++.++.. ..+ ...... ....+..+...+.++.+++++.++.
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA-NCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE 80 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC-GGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc-ccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 6899999999999999999999666999999999876521 111 101111 1112223344445556888877766
Q ss_pred ec------eEEEecc---c---ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCC
Q 014990 95 LG------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 95 v~------~~v~~~~---~---~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k 160 (415)
+. +.+++.. . ...||+||||||+ .|+.|++||.+..++++...+.. .+.... ....++
T Consensus 81 V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~-~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~-------~~~~~~ 152 (565)
T 3ntd_A 81 VVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVPPIPGVDNPLTHSLRNIPDMDRILQTI-------QMNNVE 152 (565)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTCCSTTEECCSSHHHHHHHHHHH-------HHTTCS
T ss_pred EEEEECCCCEEEEEecCCCCeEEEECCEEEECCCC-CCCCCCCCCCCCCCEEEeCCHHHHHHHHHHH-------hhCCCC
Confidence 52 2233322 2 3479999999999 78888999998777766543321 111000 001578
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+...+. +++
T Consensus 153 ~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~-~~~---------------- 194 (565)
T 3ntd_A 153 HATVVGGGFIGLEMMESLHH--------------------LG-IKTTLLELADQVMTPVD-REM---------------- 194 (565)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSCTTSC-HHH----------------
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------cC-CcEEEEEcCCccchhcC-HHH----------------
Confidence 99999999999999999986 34 58999999875432111 111
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
...+.+.+. +.||+++++..+.++. ...+..+..............++
T Consensus 195 -----------------~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~~~~~~~~~~~~~~~~~~~~~~~ 242 (565)
T 3ntd_A 195 -----------------AGFAHQAIR-------------DQGVDLRLGTALSEVS--YQVQTHVASDAAGEDTAHQHIKG 242 (565)
T ss_dssp -----------------HHHHHHHHH-------------HTTCEEEETCCEEEEE--EECCCCCCCGGGTCCCTTCCTTC
T ss_pred -----------------HHHHHHHHH-------------HCCCEEEeCCeEEEEe--ccccccccccccccccccccCCC
Confidence 111222222 5689999998888876 20010000000000000000001
Q ss_pred cc-eeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc------CC
Q 014990 321 KQ-YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR------GP 393 (415)
Q Consensus 321 ~~-~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~------~~ 393 (415)
.. +...+| ++++||.||+|+|++|+. .+....|+.++++|++.+|++ ++|+.|||||+|||+. +.
T Consensus 243 ~~~v~~~~g--~~i~~D~vi~a~G~~p~~----~l~~~~g~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~g~ 314 (565)
T 3ntd_A 243 HLSLTLSNG--ELLETDLLIMAIGVRPET----QLARDAGLAIGELGGIKVNAM--MQTSDPAIYAVGDAVEEQDFVTGQ 314 (565)
T ss_dssp EEEEEETTS--CEEEESEEEECSCEEECC----HHHHHHTCCBCTTSSBCCCTT--CBCSSTTEEECGGGBCEEBTTTCC
T ss_pred cEEEEEcCC--CEEEcCEEEECcCCccch----HHHHhCCcccCCCCCEEECCC--cccCCCCEEEeeeeEeeccccCCc
Confidence 00 001123 379999999999999975 344455778888899999986 8899999999999973 22
Q ss_pred c---cchhhhhhhHHHHHhhccc
Q 014990 394 T---GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 ~---~~~~~a~~~g~~~a~~i~~ 413 (415)
. .....|+.||+.||.+|..
T Consensus 315 ~~~~~~~~~A~~~g~~aa~~i~g 337 (565)
T 3ntd_A 315 ACLVPLAGPANRQGRMAADNMFG 337 (565)
T ss_dssp EECCCCHHHHHHHHHHHHHHHTT
T ss_pred eeecccHHHHHHHHHHHHHHhcC
Confidence 1 2455799999999999874
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=256.32 Aligned_cols=282 Identities=18% Similarity=0.205 Sum_probs=193.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------c-CCCCCC--c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------S-GVAPDH--P 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~-~~~~~~--~ 69 (415)
..++|+|||||+||+++|.+|++.+ .+|+|||++ .+||.+. + ++.+.. .
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQG--AQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 79 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence 4689999999999999999999998 999999998 4555321 1 121110 0
Q ss_pred chHHHH-------HH-----HHHHhhcc-CeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCCC
Q 014990 70 ETKIVI-------NQ-----FSRVVQHE-RCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (415)
Q Consensus 70 ~~~~~~-------~~-----~~~~~~~~-~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~ 128 (415)
....+. .. +...++.. +++++.+.... ..+...++ ...||+||+|||+ .|+.|++||.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~G~ 158 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGA-SPAVPPIPGL 158 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCE-EECCCCCTTT
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCC-CCCCCCCCCC
Confidence 111111 11 12445556 88887765321 12333333 3579999999998 7888899998
Q ss_pred CCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEE
Q 014990 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (415)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 208 (415)
+...+++..++.. + ...+++|+|||+|.+|+|+|..|.+ .+ .+|++
T Consensus 159 ~~~~~~~~~~~~~-~------------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtl 204 (467)
T 1zk7_A 159 KESPYWTSTEALA-S------------DTIPERLAVIGSSVVALELAQAFAR--------------------LG-SKVTV 204 (467)
T ss_dssp TTSCCBCHHHHHH-C------------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEE
T ss_pred CcCceecHHHHhc-c------------cccCCEEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 7655666554442 1 1147999999999999999999986 34 58999
Q ss_pred EeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEec
Q 014990 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (415)
Q Consensus 209 ~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 288 (415)
+.|++.+.. + +++ +...+.+.+. +.||+++++
T Consensus 205 v~~~~~~l~-~-~~~---------------------------------~~~~l~~~l~-------------~~Gv~i~~~ 236 (467)
T 1zk7_A 205 LARNTLFFR-E-DPA---------------------------------IGEAVTAAFR-------------AEGIEVLEH 236 (467)
T ss_dssp ECSSCTTTT-S-CHH---------------------------------HHHHHHHHHH-------------HTTCEEETT
T ss_pred EEECCccCC-C-CHH---------------------------------HHHHHHHHHH-------------hCCCEEEcC
Confidence 999875421 1 111 1112222232 568999999
Q ss_pred cccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCce
Q 014990 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (415)
Q Consensus 289 ~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i 368 (415)
..+.++. . ++....+.+ .+ .++++|.||+|+|++|+. ..+ .....++.++++|++
T Consensus 237 ~~v~~i~--~--~~~~~~v~~-----------------~~--~~i~aD~Vv~a~G~~p~~-~~l-~l~~~gl~~~~~G~i 291 (467)
T 1zk7_A 237 TQASQVA--H--MDGEFVLTT-----------------TH--GELRADKLLVATGRTPNT-RSL-ALDAAGVTVNAQGAI 291 (467)
T ss_dssp CCEEEEE--E--ETTEEEEEE-----------------TT--EEEEESEEEECSCEEESC-TTS-CGGGGTCCBCTTSCB
T ss_pred CEEEEEE--E--eCCEEEEEE-----------------CC--cEEEcCEEEECCCCCcCC-CcC-CchhcCCcCCCCCCE
Confidence 9888886 3 332222221 22 279999999999999975 111 124557777888999
Q ss_pred eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 369 ~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.+|+. ++|+.|+|||+|||+..+.. ...|+.||+.+|.+|..
T Consensus 292 ~vd~~--~~t~~~~iya~GD~~~~~~~-~~~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 292 VIDQG--MRTSNPNIYAAGDCTDQPQF-VYVAAAAGTRAAINMTG 333 (467)
T ss_dssp CCCTT--CBCSSTTEEECSTTBSSCCC-HHHHHHHHHHHHHHHTT
T ss_pred EECCC--cccCCCCEEEEeccCCCccc-HHHHHHHHHHHHHHHcC
Confidence 99987 88999999999999876543 44799999999999863
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=263.57 Aligned_cols=284 Identities=14% Similarity=0.131 Sum_probs=192.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------cCCC------C
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVA------P 66 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~~~~------~ 66 (415)
..++|+|||||+||+++|..|++.+ .+|+|||++. .||.+. ++.. +
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g--~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 86 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYG--AKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK 86 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTS--CCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCC--CcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence 4689999999999999999999998 9999999984 555321 1110 0
Q ss_pred --CCcchHHHH-----------HHHHHHhhccCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCC-C
Q 014990 67 --DHPETKIVI-----------NQFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRAL-G 124 (415)
Q Consensus 67 --~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~-~ 124 (415)
.......+. ..+...++..+++++.+.... ..+...++ ...||+||+|||+ .|+.| +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~~ 165 (479)
T 2hqm_A 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGG-KAIFPEN 165 (479)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCE-EECCCTT
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCC-CCCCCCC
Confidence 000111111 123344556788888775431 12333333 3579999999999 67787 8
Q ss_pred CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc
Q 014990 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (415)
Q Consensus 125 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (415)
+||.+ .+.++.++.. + ...+++|+|||+|.+|+|+|..|.+ .+ .
T Consensus 166 i~g~~--~~~~~~~~~~-l------------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~ 209 (479)
T 2hqm_A 166 IPGFE--LGTDSDGFFR-L------------EEQPKKVVVVGAGYIGIELAGVFHG--------------------LG-S 209 (479)
T ss_dssp STTGG--GSBCHHHHHH-C------------SSCCSEEEEECSSHHHHHHHHHHHH--------------------TT-C
T ss_pred CCCcc--cccchHHHhc-c------------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 88874 2444444432 1 0147999999999999999999986 34 5
Q ss_pred eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEE
Q 014990 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (415)
Q Consensus 205 ~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 284 (415)
+|+++.|++.+...+. ++ +...+.+.+. +.||+
T Consensus 210 ~Vtlv~~~~~~l~~~d-~~---------------------------------~~~~l~~~l~-------------~~Gv~ 242 (479)
T 2hqm_A 210 ETHLVIRGETVLRKFD-EC---------------------------------IQNTITDHYV-------------KEGIN 242 (479)
T ss_dssp EEEEECSSSSSCTTSC-HH---------------------------------HHHHHHHHHH-------------HHTCE
T ss_pred ceEEEEeCCccccccC-HH---------------------------------HHHHHHHHHH-------------hCCeE
Confidence 8999999875432111 11 1122223332 56899
Q ss_pred EEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccC
Q 014990 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (415)
Q Consensus 285 ~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~ 364 (415)
++++..+.++. .++++.+..+++. +|+ +++++|.||+|+|++|+. .+. .+..|+.+++
T Consensus 243 i~~~~~v~~i~--~~~~~~~~~v~~~----------------~G~-~~i~~D~vv~a~G~~p~~--~l~-l~~~gl~~~~ 300 (479)
T 2hqm_A 243 VHKLSKIVKVE--KNVETDKLKIHMN----------------DSK-SIDDVDELIWTIGRKSHL--GMG-SENVGIKLNS 300 (479)
T ss_dssp EECSCCEEEEE--ECC-CCCEEEEET----------------TSC-EEEEESEEEECSCEEECC--CSS-GGGGTCCBCT
T ss_pred EEeCCEEEEEE--EcCCCcEEEEEEC----------------CCc-EEEEcCEEEECCCCCCcc--ccC-hhhcCceECC
Confidence 99999998886 3112222233321 232 479999999999999976 221 3556788888
Q ss_pred CCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 365 ~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|++.+|+. ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 301 ~G~i~vd~~--~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 301 HDQIIADEY--QNTNVPNIYSLGDVVGKVE-LTPVAIAAGRKLSNRLFG 346 (479)
T ss_dssp TSCBCCCTT--CBCSSTTEEECGGGTTSSC-CHHHHHHHHHHHHHHHHS
T ss_pred CCCEeECCC--CccCCCCEEEEEecCCCcc-cHHHHHHHHHHHHHHhcC
Confidence 899999987 7899999999999975544 455799999999999863
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=265.32 Aligned_cols=285 Identities=19% Similarity=0.234 Sum_probs=193.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCCceEEEEc--------CCCCCCCcccc-CCCC---------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIID--------RLPTPFGLVRS-GVAP--------------------- 66 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~v~lie--------~~~~~gg~~~~-~~~~--------------------- 66 (415)
..++|+|||||+||+++|..|++ .| .+|+||| +...+||.+.. ++.|
T Consensus 6 ~~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g 83 (495)
T 2wpf_A 6 KAFDLVVIGAGSGGLEAGWNAATLYG--KRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFG 83 (495)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCEEEECCChhHHHHHHHHHHhcC--CeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcC
Confidence 35799999999999999999999 98 9999999 34556664321 1111
Q ss_pred ---C----CcchHHHHH-----------HHHHHhhcc-CeEEEeceEec---eEEEec---------ccccccCEEEEcc
Q 014990 67 ---D----HPETKIVIN-----------QFSRVVQHE-RCSFFGNVTLG---SSVSLS---------ELRQLYHVVVLAY 115 (415)
Q Consensus 67 ---~----~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~v~---~~v~~~---------~~~~~~d~lvlAt 115 (415)
. .....++.. .+...++.. +++++.+.... +.+.+. .....||+|||||
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViAT 163 (495)
T 2wpf_A 84 WEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLAT 163 (495)
T ss_dssp EECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred cccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeC
Confidence 0 001111111 223344566 89988876431 234443 2235899999999
Q ss_pred CCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHH
Q 014990 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195 (415)
Q Consensus 116 G~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~ 195 (415)
|+ .|+.|++||.+ .++++.++.. . ...+++|+|||+|.+|+|+|..|.+
T Consensus 164 Gs-~p~~p~i~G~~--~~~~~~~~~~----~---------~~~~~~vvViGgG~ig~E~A~~l~~--------------- 212 (495)
T 2wpf_A 164 GS-WPQMPAIPGIE--HCISSNEAFY----L---------PEPPRRVLTVGGGFISVEFAGIFNA--------------- 212 (495)
T ss_dssp CE-EECCCCCTTGG--GCEEHHHHTT----C---------SSCCSEEEEECSSHHHHHHHHHHHH---------------
T ss_pred CC-CcCCCCCCCcc--ccccHHHHHh----h---------hhcCCeEEEECCCHHHHHHHHHHHh---------------
Confidence 99 67888899873 3455444331 1 1147899999999999999999986
Q ss_pred HHhhcC-C-cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccC
Q 014990 196 TALEGS-S-IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASAS 273 (415)
Q Consensus 196 ~~~~~~-~-~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (415)
. . ..+|+++.|++.+...+.. + +...+.+.+.
T Consensus 213 -----~~~~g~~Vtlv~~~~~~l~~~d~-~---------------------------------~~~~l~~~l~------- 246 (495)
T 2wpf_A 213 -----YKPPGGKVTLCYRNNLILRGFDE-T---------------------------------IREEVTKQLT------- 246 (495)
T ss_dssp -----HCCTTCEEEEEESSSSSCTTSCH-H---------------------------------HHHHHHHHHH-------
T ss_pred -----hCCCCCeEEEEEcCCccccccCH-H---------------------------------HHHHHHHHHH-------
Confidence 2 0 3589999998754321111 1 1122223332
Q ss_pred CCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCc
Q 014990 274 SQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLP 353 (415)
Q Consensus 274 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~ 353 (415)
+.||+++++..+.++. . +++....+++. +|+ ++++|.||+|+|++|+. ..+
T Consensus 247 ------~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~G~--~i~~D~vv~a~G~~p~~-~~L- 297 (495)
T 2wpf_A 247 ------ANGIEIMTNENPAKVS--L-NTDGSKHVTFE----------------SGK--TLDVDVVMMAIGRIPRT-NDL- 297 (495)
T ss_dssp ------HTTCEEEESCCEEEEE--E-CTTSCEEEEET----------------TSC--EEEESEEEECSCEEECC-GGG-
T ss_pred ------hCCCEEEeCCEEEEEE--E-cCCceEEEEEC----------------CCc--EEEcCEEEECCCCcccc-ccc-
Confidence 5689999999999886 3 22222233321 232 79999999999999975 111
Q ss_pred ccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 354 FDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 354 ~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
..+..|+.++++|++.+|+. ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 298 ~l~~~gl~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~-l~~~A~~~g~~aa~~i~g 354 (495)
T 2wpf_A 298 QLGNVGVKLTPKGGVQVDEF--SRTNVPNIYAIGDITDRLM-LTPVAINEGAALVDTVFG 354 (495)
T ss_dssp TGGGTTCCBCTTSSBCCCTT--CBCSSTTEEECGGGGCSCC-CHHHHHHHHHHHHHHHHS
T ss_pred chhhcCccCCCCCCEEECCC--CccCCCCEEEEeccCCCcc-CHHHHHHHHHHHHHHhcC
Confidence 13556788888899999987 8899999999999986543 555799999999999864
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=261.48 Aligned_cols=290 Identities=15% Similarity=0.151 Sum_probs=193.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc---cCCCCCCcchHHHHHHH-HHHhhccCeEEEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR---SGVAPDHPETKIVINQF-SRVVQHERCSFFGNVT 94 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 94 (415)
.++|+|||||+||+++|..|++.+++.+|+|||+.+..+.... ...........++.... ..+.+..+++++.+..
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~ 115 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHE 115 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEE
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCE
Confidence 5799999999999999999999743499999999887542210 00001111122222111 2222455888887655
Q ss_pred ec------eEEEecc---c---ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCC
Q 014990 95 LG------SSVSLSE---L---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 95 v~------~~v~~~~---~---~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k 160 (415)
+. ..+.+.. + ...||+||+|||+ .|+.|++||.+.+++++...+.. .+..... ...++
T Consensus 116 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~-------~~~~~ 187 (480)
T 3cgb_A 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGV-RPVMPEWEGRDLQGVHLLKTIPDAERILKTLE-------TNKVE 187 (480)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCBTTTSBTEECCSSHHHHHHHHHHHH-------SSCCC
T ss_pred EEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCC-cccCCCCCCccCCCEEEeCCHHHHHHHHHHhh-------hcCCC
Confidence 42 2333332 2 3589999999999 68888999987667766432221 1110000 01579
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+...+. +
T Consensus 188 ~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~-~------------------ 227 (480)
T 3cgb_A 188 DVTIIGGGAIGLEMAETFVE--------------------LG-KKVRMIERNDHIGTIYD-G------------------ 227 (480)
T ss_dssp EEEEECCHHHHHHHHHHHHH--------------------TT-CEEEEECCGGGTTSSSC-H------------------
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------cC-CeEEEEEeCCchhhcCC-H------------------
Confidence 99999999999999999986 34 58999998865422111 1
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
.+...+.+.+. +.||+++++..+.++. . ++.+..+..
T Consensus 228 ---------------~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i~--~--~~~v~~v~~----------- 264 (480)
T 3cgb_A 228 ---------------DMAEYIYKEAD-------------KHHIEILTNENVKAFK--G--NERVEAVET----------- 264 (480)
T ss_dssp ---------------HHHHHHHHHHH-------------HTTCEEECSCCEEEEE--E--SSBEEEEEE-----------
T ss_pred ---------------HHHHHHHHHHH-------------HcCcEEEcCCEEEEEE--c--CCcEEEEEE-----------
Confidence 11112222222 5689999999988886 3 443433321
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc------
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT------ 394 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~------ 394 (415)
.+ .+++||.||+|+|++|+. ++....|+.++++|++.+|++ ++|+.|||||+|||+..+.
T Consensus 265 ------~~--~~i~~D~vi~a~G~~p~~----~~l~~~g~~~~~~G~I~Vd~~--~~ts~p~IyA~GD~~~~~~~~~g~~ 330 (480)
T 3cgb_A 265 ------DK--GTYKADLVLVSVGVKPNT----DFLEGTNIRTNHKGAIEVNAY--MQTNVQDVYAAGDCATHYHVIKEIH 330 (480)
T ss_dssp ------TT--EEEECSEEEECSCEEESC----GGGTTSCCCBCTTSCBCCCTT--SBCSSTTEEECGGGBCEEBTTTCSE
T ss_pred ------CC--CEEEcCEEEECcCCCcCh----HHHHhCCcccCCCCCEEECCC--ccCCCCCEEEeeeEEEecCCCCCcc
Confidence 12 279999999999999975 355667788888899999987 8899999999999984321
Q ss_pred ---cchhhhhhhHHHHHhhccc
Q 014990 395 ---GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 395 ---~~~~~a~~~g~~~a~~i~~ 413 (415)
.....|+.||+.+|.+|..
T Consensus 331 ~~~~~~~~A~~qg~~aa~~i~g 352 (480)
T 3cgb_A 331 DHIPIGTTANKQGRLAGLNMLD 352 (480)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTT
T ss_pred eecchHHHHHHHHHHHHHHhcC
Confidence 2455799999999999864
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-30 Score=259.66 Aligned_cols=281 Identities=16% Similarity=0.099 Sum_probs=196.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc---CCCceEEEEcCCCCCCCccc-------------------------cCCC--CC-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVR-------------------------SGVA--PD- 67 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~---g~~~~v~lie~~~~~gg~~~-------------------------~~~~--~~- 67 (415)
.++|+|||||+||+++|.+|++. + .+|+|||+.+ +||... +++. ..
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G--~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPET--TQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD 78 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTT--EEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCc--CEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 36899999999999999999999 7 9999999988 665321 1110 00
Q ss_pred -CcchHHH-----------HHHHHHHhhccCeEEEeceEec---------eE--EEeccc---ccccCEEEEccCCCCCC
Q 014990 68 -HPETKIV-----------INQFSRVVQHERCSFFGNVTLG---------SS--VSLSEL---RQLYHVVVLAYGAESDR 121 (415)
Q Consensus 68 -~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~---------~~--v~~~~~---~~~~d~lvlAtG~~~~~ 121 (415)
......+ ...+.+.++..+++++.+.... .. +...++ ...||+||+|||+ .|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs-~p~ 157 (499)
T 1xdi_A 79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA-SPR 157 (499)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE-EEC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCC-CCC
Confidence 0111111 2224555667789988776431 22 222223 3579999999999 688
Q ss_pred CCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcC
Q 014990 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (415)
Q Consensus 122 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 201 (415)
.|+++|.+..++++..++.. . ...+++|+|||+|.+|+|+|..+.+ .
T Consensus 158 ~p~i~g~~~~~v~~~~~~~~----~---------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~ 204 (499)
T 1xdi_A 158 ILPSAQPDGERILTWRQLYD----L---------DALPDHLIVVGSGVTGAEFVDAYTE--------------------L 204 (499)
T ss_dssp CCGGGCCCSSSEEEGGGGGG----C---------SSCCSSEEEESCSHHHHHHHHHHHH--------------------T
T ss_pred CCCCCCCCcCcEEehhHhhh----h---------hccCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence 88899987666776655432 1 1146899999999999999999986 3
Q ss_pred CcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce
Q 014990 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (415)
Q Consensus 202 ~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (415)
+ .+|+++.+++.+...+ ++ .+...+.+.+. +.
T Consensus 205 g-~~Vtlv~~~~~~l~~~-d~---------------------------------~~~~~l~~~l~-------------~~ 236 (499)
T 1xdi_A 205 G-VPVTVVASQDHVLPYE-DA---------------------------------DAALVLEESFA-------------ER 236 (499)
T ss_dssp T-CCEEEECSSSSSSCCS-SH---------------------------------HHHHHHHHHHH-------------HT
T ss_pred C-CeEEEEEcCCcccccc-CH---------------------------------HHHHHHHHHHH-------------HC
Confidence 4 5899999987542211 11 11122223332 56
Q ss_pred eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcc--cCCCC
Q 014990 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF--DNHKG 359 (415)
Q Consensus 282 ~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~--~~~~g 359 (415)
||+++++..+.++. . +++.+ .++. ++++++++|.||+|+|++|+. ++ .+..|
T Consensus 237 GV~i~~~~~V~~i~--~-~~~~v-~v~~------------------~~g~~i~aD~Vv~a~G~~p~~----~~l~l~~~g 290 (499)
T 1xdi_A 237 GVRLFKNARAASVT--R-TGAGV-LVTM------------------TDGRTVEGSHALMTIGSVPNT----SGLGLERVG 290 (499)
T ss_dssp TCEEETTCCEEEEE--E-CSSSE-EEEE------------------TTSCEEEESEEEECCCEEECC----SSSCTTTTT
T ss_pred CCEEEeCCEEEEEE--E-eCCEE-EEEE------------------CCCcEEEcCEEEECCCCCcCC----CcCCchhcC
Confidence 89999999998886 3 23322 2221 122379999999999999976 22 35668
Q ss_pred ccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 360 ~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+.++++|++.+|+. ++|+.|+|||+|||+..+. +...|+.||+.+|.+|..
T Consensus 291 l~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~-l~~~A~~~g~~aa~~i~g 341 (499)
T 1xdi_A 291 IQLGRGNYLTVDRV--SRTLATGIYAAGDCTGLLP-LASVAAMQGRIAMYHALG 341 (499)
T ss_dssp CCCBTTTBCCCCSS--SBCSSTTEEECSGGGTSCS-CHHHHHHHHHHHHHHHTT
T ss_pred ceECCCCCEEECCC--cccCCCCEEEEeccCCCcc-cHHHHHHHHHHHHHHhcC
Confidence 88888899999987 8899999999999986554 455799999999999874
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=260.24 Aligned_cols=290 Identities=16% Similarity=0.160 Sum_probs=192.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC--------CCCCCCccc-------------------------cCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR--------LPTPFGLVR-------------------------SGV 64 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~--------~~~~gg~~~-------------------------~~~ 64 (415)
..++|+||||||||+++|..|++.| .+|+|||+ ...+||.+. +++
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 82 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLG--KKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW 82 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence 5689999999999999999999999 99999997 445676321 122
Q ss_pred CC---CCcchHHHHH-----------HHHHHhhccCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCC
Q 014990 65 AP---DHPETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 65 ~~---~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.. .......+.. .+...++..+++++.+.... ..+...++ ...||+||||||+ .|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~ 161 (488)
T 3dgz_A 83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGG-RPRY 161 (488)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCE-EECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCC-CCCC
Confidence 11 1111111111 12334555678887665431 12333332 3579999999998 7888
Q ss_pred CC-CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcC
Q 014990 123 LG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (415)
Q Consensus 123 ~~-i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 201 (415)
|+ +||.+.. ..++.++.. . ...+++|+|||+|.+|+|+|..|.+ .
T Consensus 162 p~~i~G~~~~-~~~~~~~~~----~---------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~ 207 (488)
T 3dgz_A 162 PTQVKGALEY-GITSDDIFW----L---------KESPGKTLVVGASYVALECAGFLTG--------------------I 207 (488)
T ss_dssp CSSCBTHHHH-CBCHHHHTT----C---------SSCCCSEEEECCSHHHHHHHHHHHH--------------------T
T ss_pred CCCCCCcccc-cCcHHHHHh----h---------hhcCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence 88 9987422 233333221 1 1146789999999999999999986 3
Q ss_pred CcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce
Q 014990 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (415)
Q Consensus 202 ~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (415)
+ .+|+++.|+..+ ..+ +++ +...+.+.+. +.
T Consensus 208 g-~~Vtlv~~~~~l-~~~-d~~---------------------------------~~~~l~~~l~-------------~~ 238 (488)
T 3dgz_A 208 G-LDTTVMMRSIPL-RGF-DQQ---------------------------------MSSLVTEHME-------------SH 238 (488)
T ss_dssp T-CCEEEEESSCSS-TTS-CHH---------------------------------HHHHHHHHHH-------------HT
T ss_pred C-CceEEEEcCccc-ccC-CHH---------------------------------HHHHHHHHHH-------------HC
Confidence 4 589999886421 111 111 1112223332 56
Q ss_pred eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcc
Q 014990 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361 (415)
Q Consensus 282 ~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~ 361 (415)
||+++++..+.++. . .++....+++.+. ..|+..++++|.||+|+|++|+. ..+. ....++.
T Consensus 239 gv~~~~~~~v~~i~--~-~~~~~~~v~~~~~-------------~~g~~~~~~~D~vi~a~G~~p~~-~~l~-l~~~g~~ 300 (488)
T 3dgz_A 239 GTQFLKGCVPSHIK--K-LPTNQLQVTWEDH-------------ASGKEDTGTFDTVLWAIGRVPET-RTLN-LEKAGIS 300 (488)
T ss_dssp TCEEEETEEEEEEE--E-CTTSCEEEEEEET-------------TTTEEEEEEESEEEECSCEEESC-GGGT-GGGGTCC
T ss_pred CCEEEeCCEEEEEE--E-cCCCcEEEEEEeC-------------CCCeeEEEECCEEEEcccCCccc-CcCC-ccccCcE
Confidence 89999998888886 3 2222223444331 02444578999999999999976 1111 2456778
Q ss_pred cc-CCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 362 PN-IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 362 ~~-~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++ ++|++.+|++ ++|+.|||||+|||+.+.......|+.||+.+|.+|..
T Consensus 301 ~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 351 (488)
T 3dgz_A 301 TNPKNQKIIVDAQ--EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG 351 (488)
T ss_dssp BCSSSCCBCCCTT--SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred ecCCCCeEeECCC--CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcC
Confidence 88 7899999987 88999999999999755555566899999999999864
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=262.97 Aligned_cols=283 Identities=11% Similarity=0.165 Sum_probs=191.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCC-------------------C--------c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD-------------------H--------P 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~-------------------~--------~ 69 (415)
..++|+|||||+||+++|.+|++.+ .+|+|||++ .+||.+. .++.|. + .
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYG--QKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF 79 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCC--CeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 4579999999999999999999998 999999998 4565421 110000 0 0
Q ss_pred chHH-----------HHHHHHHHhhccCeEEEeceEec---eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 014990 70 ETKI-----------VINQFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (415)
Q Consensus 70 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~---~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~ 135 (415)
.... +...+...++..+++++.+.... +.+.++.....||+||+|||+ .|..|++||.+ .+.+
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs-~p~~p~i~g~~--~~~~ 156 (450)
T 1ges_A 80 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGG-RPSHPDIPGVE--YGID 156 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCE-EECCCCSTTGG--GSBC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCC-CCCCCCCCCcc--ceec
Confidence 0111 11122334456688888775431 234443334589999999999 67888899874 3444
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..++.. +. ..+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+
T Consensus 157 ~~~~~~-~~------------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~ 202 (450)
T 1ges_A 157 SDGFFA-LP------------ALPERVAVVGAGYIGVELGGVING--------------------LG-AKTHLFEMFDAP 202 (450)
T ss_dssp HHHHHH-CS------------SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSS
T ss_pred HHHhhh-hh------------hcCCeEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEEeCCch
Confidence 444432 11 147899999999999999999986 34 589999988654
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
...+.. .+...+.+.+. +.||+++++..+.++.
T Consensus 203 l~~~~~----------------------------------~~~~~l~~~l~-------------~~Gv~i~~~~~v~~i~ 235 (450)
T 1ges_A 203 LPSFDP----------------------------------MISETLVEVMN-------------AEGPQLHTNAIPKAVV 235 (450)
T ss_dssp STTSCH----------------------------------HHHHHHHHHHH-------------HHSCEEECSCCEEEEE
T ss_pred hhhhhH----------------------------------HHHHHHHHHHH-------------HCCCEEEeCCEEEEEE
Confidence 221111 11122223332 5689999999998886
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. +++....+++. +|+ ++++|.||+|+|++|+. ..+ ..+..|+.++++|++.+|+.
T Consensus 236 --~-~~~~~~~v~~~----------------~g~--~i~~D~vv~a~G~~p~~-~~l-~~~~~gl~~~~~g~i~vd~~-- 290 (450)
T 1ges_A 236 --K-NTDGSLTLELE----------------DGR--SETVDCLIWAIGREPAN-DNI-NLEAAGVKTNEKGYIVVDKY-- 290 (450)
T ss_dssp --E-CTTSCEEEEET----------------TSC--EEEESEEEECSCEEESC-TTS-CHHHHTCCBCTTSCBCCCTT--
T ss_pred --E-eCCcEEEEEEC----------------CCc--EEEcCEEEECCCCCcCC-CCC-CchhcCceECCCCCEeECCC--
Confidence 3 22221223321 232 79999999999999965 111 12345677888899999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 291 ~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 291 QNTNIEGIYAVGDNTGAVE-LTPVAVAAGRRLSERLFN 327 (450)
T ss_dssp SBCSSTTEEECSGGGTSCC-CHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCEEEEeccCCCCc-cHHHHHHHHHHHHHHHcC
Confidence 7899999999999986544 455799999999999864
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=260.96 Aligned_cols=282 Identities=13% Similarity=0.187 Sum_probs=187.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------cCCCCC-CcchH
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD-HPETK 72 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~~~~~~-~~~~~ 72 (415)
.++|+|||||+||+++|..|++.+ .+|+|||+++ .||.+. +++... .....
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~-~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHN--AKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP 78 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC-cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence 378999999999999999999998 9999999985 555421 121100 00111
Q ss_pred -----------HHHHHHHHHhhccCeEEEeceEec---eEEEecc--------------cccccCEEEEccCCCCCCCCC
Q 014990 73 -----------IVINQFSRVVQHERCSFFGNVTLG---SSVSLSE--------------LRQLYHVVVLAYGAESDRALG 124 (415)
Q Consensus 73 -----------~~~~~~~~~~~~~~~~~~~~~~v~---~~v~~~~--------------~~~~~d~lvlAtG~~~~~~~~ 124 (415)
.+...+...++..+++++.+..+. +.+.+.. ....||+||+|||+ .|..|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs-~p~~p~ 157 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGN-KPVFPP 157 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCC-CBCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCC-CCCCCC
Confidence 111223445566789888775431 1233321 23589999999999 678888
Q ss_pred CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc
Q 014990 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (415)
Q Consensus 125 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (415)
+||.+ .+.++.++.. +..+++|+|||+|.+|+|+|..|.+ .+ .
T Consensus 158 i~G~~--~~~~~~~~~~--------------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~ 200 (500)
T 1onf_A 158 VKGIE--NTISSDEFFN--------------IKESKKIGIVGSGYIAVELINVIKR--------------------LG-I 200 (500)
T ss_dssp CTTGG--GCEEHHHHTT--------------CCCCSEEEEECCSHHHHHHHHHHHT--------------------TT-C
T ss_pred CCCCC--cccCHHHHhc--------------cCCCCeEEEECChHHHHHHHHHHHH--------------------cC-C
Confidence 99874 3444443321 1127899999999999999999986 34 5
Q ss_pred eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEE
Q 014990 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (415)
Q Consensus 205 ~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 284 (415)
+|+++.|++.+...+. ++ +...+.+.+. +.||+
T Consensus 201 ~Vtlv~~~~~~l~~~d-~~---------------------------------~~~~l~~~l~-------------~~gv~ 233 (500)
T 1onf_A 201 DSYIFARGNRILRKFD-ES---------------------------------VINVLENDMK-------------KNNIN 233 (500)
T ss_dssp EEEEECSSSSSCTTSC-HH---------------------------------HHHHHHHHHH-------------HTTCE
T ss_pred eEEEEecCCccCcccc-hh---------------------------------hHHHHHHHHH-------------hCCCE
Confidence 8999999875432111 11 1112223332 56899
Q ss_pred EEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccC
Q 014990 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (415)
Q Consensus 285 ~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~ 364 (415)
++++..+.++. . .++....+.+. +|+. ++++|.||+|+|++|+. ..+ .....|+.+ +
T Consensus 234 i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g~~-~~~~D~vi~a~G~~p~~-~~l-~~~~~g~~~-~ 290 (500)
T 1onf_A 234 IVTFADVVEIK--K-VSDKNLSIHLS----------------DGRI-YEHFDHVIYCVGRSPDT-ENL-KLEKLNVET-N 290 (500)
T ss_dssp EECSCCEEEEE--E-SSTTCEEEEET----------------TSCE-EEEESEEEECCCBCCTT-TTS-SCTTTTCCB-S
T ss_pred EEECCEEEEEE--E-cCCceEEEEEC----------------CCcE-EEECCEEEECCCCCcCC-CCC-CchhcCccc-c
Confidence 99999998886 3 22221223321 2332 39999999999999975 111 135667777 7
Q ss_pred CCceeeccCCCCCcccCCeeeeecccc---------------------------------CCccchhhhhhhHHHHHhhc
Q 014990 365 RGRVLKNISGDSSQVENGLYVCGWLKR---------------------------------GPTGIIATNLYCAEETVSSL 411 (415)
Q Consensus 365 ~G~i~v~~~~~~~t~~p~vfaiGD~~~---------------------------------~~~~~~~~a~~~g~~~a~~i 411 (415)
+|++.+|+. ++|+.|||||+|||+. +.......|+.||+.+|.+|
T Consensus 291 ~G~i~vd~~--~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 368 (500)
T 1onf_A 291 NNYIVVDEN--QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRL 368 (500)
T ss_dssp SSCEEECTT--CBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCC--cccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHH
Confidence 899999987 7899999999999981 23345668999999999998
Q ss_pred cc
Q 014990 412 SL 413 (415)
Q Consensus 412 ~~ 413 (415)
..
T Consensus 369 ~g 370 (500)
T 1onf_A 369 FL 370 (500)
T ss_dssp HS
T ss_pred hC
Confidence 63
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=261.33 Aligned_cols=285 Identities=18% Similarity=0.241 Sum_probs=193.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCCceEEEEc--------CCCCCCCccc-------------------------cC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIID--------RLPTPFGLVR-------------------------SG 63 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~v~lie--------~~~~~gg~~~-------------------------~~ 63 (415)
..++|+|||||+||+++|.+|++ .| .+|+||| +.+.+||... ++
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 79 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHK--KRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFG 79 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcC--CEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999 98 9999999 3556677432 11
Q ss_pred CCCC----CcchHHHH-----------HHHHHHhhcc-CeEEEeceEec---eEEEec-----cc----ccccCEEEEcc
Q 014990 64 VAPD----HPETKIVI-----------NQFSRVVQHE-RCSFFGNVTLG---SSVSLS-----EL----RQLYHVVVLAY 115 (415)
Q Consensus 64 ~~~~----~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~v~---~~v~~~-----~~----~~~~d~lvlAt 115 (415)
+... ......+. ..+...++.. +++++.+.... ..+.+. ++ ...||+|||||
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAt 159 (490)
T 1fec_A 80 WELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLAT 159 (490)
T ss_dssp EECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECC
T ss_pred cccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeC
Confidence 1000 00111111 2234445667 89988876432 133332 22 35899999999
Q ss_pred CCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHH
Q 014990 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195 (415)
Q Consensus 116 G~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~ 195 (415)
|+ .|+.|++||.+ .+++..++.. . ...+++++|||+|.+|+|+|..|.+
T Consensus 160 Gs-~p~~p~i~g~~--~~~~~~~~~~----~---------~~~~~~vvViGgG~ig~E~A~~l~~--------------- 208 (490)
T 1fec_A 160 GS-WPQHLGIEGDD--LCITSNEAFY----L---------DEAPKRALCVGGGYISIEFAGIFNA--------------- 208 (490)
T ss_dssp CE-EECCCCSBTGG--GCBCHHHHTT----C---------SSCCSEEEEECSSHHHHHHHHHHHH---------------
T ss_pred CC-CCCCCCCCCcc--ceecHHHHhh----h---------hhcCCeEEEECCCHHHHHHHHHHHh---------------
Confidence 99 67888888873 3444433321 1 1147899999999999999999985
Q ss_pred HHhhcC--CcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccC
Q 014990 196 TALEGS--SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASAS 273 (415)
Q Consensus 196 ~~~~~~--~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (415)
. ...+|+++.|++.+...+.. .+...+.+.+.
T Consensus 209 -----~~~~g~~Vtlv~~~~~~l~~~d~----------------------------------~~~~~l~~~l~------- 242 (490)
T 1fec_A 209 -----YKARGGQVDLAYRGDMILRGFDS----------------------------------ELRKQLTEQLR------- 242 (490)
T ss_dssp -----HSCTTCEEEEEESSSSSSTTSCH----------------------------------HHHHHHHHHHH-------
T ss_pred -----hccCcCeEEEEEcCCCcccccCH----------------------------------HHHHHHHHHHH-------
Confidence 2 13589999998754221111 11112222332
Q ss_pred CCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCc
Q 014990 274 SQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLP 353 (415)
Q Consensus 274 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~ 353 (415)
+.||+++++..+.++. . +++....+++. +|+ ++++|.||+|+|++|+. ..+
T Consensus 243 ------~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~G~--~i~~D~vv~a~G~~p~~-~~L- 293 (490)
T 1fec_A 243 ------ANGINVRTHENPAKVT--K-NADGTRHVVFE----------------SGA--EADYDVVMLAIGRVPRS-QTL- 293 (490)
T ss_dssp ------HTTEEEEETCCEEEEE--E-CTTSCEEEEET----------------TSC--EEEESEEEECSCEEESC-TTS-
T ss_pred ------hCCCEEEeCCEEEEEE--E-cCCCEEEEEEC----------------CCc--EEEcCEEEEccCCCcCc-ccc-
Confidence 5689999999999986 3 22222233321 232 79999999999999975 112
Q ss_pred ccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 354 FDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 354 ~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.....|+.++++|++.+|+. ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 294 ~l~~~gl~~~~~G~I~Vd~~--~~t~~~~IyA~GD~~~~~~-l~~~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 294 QLEKAGVEVAKNGAIKVDAY--SKTNVDNIYAIGDVTDRVM-LTPVAINEGAAFVDTVFA 350 (490)
T ss_dssp CGGGGTCCBCTTSCBCCCTT--CBCSSTTEEECGGGGCSCC-CHHHHHHHHHHHHHHHHS
T ss_pred CchhcCccCCCCCCEEECCC--CccCCCCEEEEeccCCCcc-CHHHHHHHHHHHHHHhcC
Confidence 13456788888899999987 8899999999999986443 555799999999999864
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=264.79 Aligned_cols=286 Identities=15% Similarity=0.167 Sum_probs=189.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------cCCCCCC--cch
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPDH--PET 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~~~~~~~--~~~ 71 (415)
.++|+||||||||+++|..|++.| .+|+|||+++ +||... +++.... ...
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G--~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 84 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHT--DKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG 84 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTC--SCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence 479999999999999999999999 9999999975 666421 1211100 111
Q ss_pred HHHHHHHH-----------HHhhcc-CeEEEeceEe---ceEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 014990 72 KIVINQFS-----------RVVQHE-RCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (415)
Q Consensus 72 ~~~~~~~~-----------~~~~~~-~~~~~~~~~v---~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~ 135 (415)
.++..++. ..+... ++.++.+... ...+.+++. ...||+||||||+ .|+.|++++.....+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs-~p~~p~~~~~~~~~v~t 163 (492)
T 3ic9_A 85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGS-RPNYPEFLAAAGSRLLT 163 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCE-ECCCCHHHHTTGGGEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCC-CCcCCCCCCccCCcEEc
Confidence 22222211 111111 2333333221 234455333 4589999999998 67777766654556666
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+.++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+
T Consensus 164 ~~~~~~----~---------~~~~k~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~~ 209 (492)
T 3ic9_A 164 NDNLFE----L---------NDLPKSVAVFGPGVIGLELGQALSR--------------------LG-VIVKVFGRSGSV 209 (492)
T ss_dssp HHHHTT----C---------SSCCSEEEEESSCHHHHHHHHHHHH--------------------TT-CEEEEECCTTCC
T ss_pred HHHHhh----h---------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEECCcc
Confidence 654432 1 1147999999999999999999986 34 579999998765
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
...+ ++++ ...+.+.+. +. |+++++..+.++.
T Consensus 210 l~~~-d~~~---------------------------------~~~l~~~l~-------------~~-V~i~~~~~v~~i~ 241 (492)
T 3ic9_A 210 ANLQ-DEEM---------------------------------KRYAEKTFN-------------EE-FYFDAKARVISTI 241 (492)
T ss_dssp TTCC-CHHH---------------------------------HHHHHHHHH-------------TT-SEEETTCEEEEEE
T ss_pred cccC-CHHH---------------------------------HHHHHHHHh-------------hC-cEEEECCEEEEEE
Confidence 3211 1111 111222221 34 8999998888886
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeec-cCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN-ISG 374 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~-~~~ 374 (415)
. .++.+ .+++.+ .+|+.+++++|.||+|+|++|+. ..+. ....|+.++++|++.+| ++
T Consensus 242 --~-~~~~v-~v~~~~--------------~~G~~~~i~~D~Vi~a~G~~p~~-~~l~-l~~~gl~~~~~G~i~vd~~~- 300 (492)
T 3ic9_A 242 --E-KEDAV-EVIYFD--------------KSGQKTTESFQYVLAATGRKANV-DKLG-LENTSIELDKKNSPLFDELT- 300 (492)
T ss_dssp --E-CSSSE-EEEEEC--------------TTCCEEEEEESEEEECSCCEESC-SSSC-GGGSCCCBCTTCCBCCCTTT-
T ss_pred --E-cCCEE-EEEEEe--------------CCCceEEEECCEEEEeeCCccCC-CCCC-hhhcCCEECCCCCEeECccc-
Confidence 3 23333 233321 03444689999999999999976 1111 35568888989999999 54
Q ss_pred CCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 375 ~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+..+. +...|+.||+.||.+|..
T Consensus 301 -~~t~~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 301 -LQTSVDHIFVAGDANNTLT-LLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp -CBCSSTTEEECGGGGTSSC-SHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCCEEEEEecCCCCc-cHHHHHHHHHHHHHHHcC
Confidence 8999999999999986554 455799999999999875
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=260.65 Aligned_cols=287 Identities=17% Similarity=0.196 Sum_probs=191.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCC-------------------------CcchH
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD-------------------------HPETK 72 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~-------------------------~~~~~ 72 (415)
.++|+|||||+||+++|..|++.+ .+|+|||+.+ +||... .+..|. .....
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g--~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLG--LKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 578999999999999999999998 9999999987 565321 111010 00111
Q ss_pred HHH-------H----HHHHHhhccCeEEEeceEec---eEEEecccccccCEEEEccCCCCCCCCC-CCCCCCCCeeech
Q 014990 73 IVI-------N----QFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG-IPGEDLIGVHSAR 137 (415)
Q Consensus 73 ~~~-------~----~~~~~~~~~~~~~~~~~~v~---~~v~~~~~~~~~d~lvlAtG~~~~~~~~-i~g~~~~~v~~~~ 137 (415)
.+. + .+...++..+++++.+..+. +.+.+......||+||+|||+ .|+.|+ +++. ..+++..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs-~p~~p~gi~~~--~~v~~~~ 159 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGS-EPLELKGFPFG--EDVWDST 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCE-EECCBTTBCCS--SSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCC-CCCCCCCCCCC--CcEEcHH
Confidence 111 1 12344566789988776542 234443224589999999999 566665 6662 2455554
Q ss_pred hhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccC
Q 014990 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (415)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~ 217 (415)
++.. +.. ..+++|+|||+|.+|+|+|..|.+ .+ .+|+++.+++.+..
T Consensus 160 ~~~~-l~~-----------~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~ 206 (464)
T 2eq6_A 160 RALK-VEE-----------GLPKRLLVIGGGAVGLELGQVYRR--------------------LG-AEVTLIEYMPEILP 206 (464)
T ss_dssp HHTC-GGG-----------CCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSST
T ss_pred HHHh-hhh-----------hcCCEEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEEcCCcccc
Confidence 4332 110 036899999999999999999986 34 58999999865421
Q ss_pred CCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccccc
Q 014990 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (415)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 297 (415)
.+ ++ .+...+.+.+. +.||+++++..+.++.
T Consensus 207 ~~-~~---------------------------------~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~-- 237 (464)
T 2eq6_A 207 QG-DP---------------------------------ETAALLRRALE-------------KEGIRVRTKTKAVGYE-- 237 (464)
T ss_dssp TS-CH---------------------------------HHHHHHHHHHH-------------HTTCEEECSEEEEEEE--
T ss_pred cc-CH---------------------------------HHHHHHHHHHH-------------hcCCEEEcCCEEEEEE--
Confidence 11 11 11112222232 5689999999998886
Q ss_pred CCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCC
Q 014990 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (415)
Q Consensus 298 ~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~ 377 (415)
. +++.+ .+++.+. .+|+.+++++|.||+|+|++|+. ..+ ..+..|+.++++|++.+|++ ++
T Consensus 238 ~-~~~~~-~v~~~~~-------------~~g~~~~i~~D~vv~a~G~~p~~-~~l-~l~~~g~~~~~~G~i~vd~~--~~ 298 (464)
T 2eq6_A 238 K-KKDGL-HVRLEPA-------------EGGEGEEVVVDKVLVAVGRKPRT-EGL-GLEKAGVKVDERGFIRVNAR--ME 298 (464)
T ss_dssp E-ETTEE-EEEEEET-------------TCCSCEEEEESEEEECSCEEESC-TTS-SHHHHTCCBCTTSCBCCCTT--CB
T ss_pred E-eCCEE-EEEEeec-------------CCCceeEEEcCEEEECCCcccCC-CCC-ChhhcCceecCCCCEEECCC--cc
Confidence 3 22222 3433210 01444479999999999999975 111 12345677777899999987 88
Q ss_pred cccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 378 t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+.|||||+|||+..+. +...|+.||+.+|.+|..
T Consensus 299 t~~~~Iya~GD~~~~~~-l~~~A~~~g~~aa~~i~g 333 (464)
T 2eq6_A 299 TSVPGVYAIGDAARPPL-LAHKAMREGLIAAENAAG 333 (464)
T ss_dssp CSSTTEEECGGGTCSSC-CHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEeccCCCcc-cHHHHHHHHHHHHHHhcC
Confidence 99999999999986554 455799999999999864
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=267.26 Aligned_cols=291 Identities=16% Similarity=0.199 Sum_probs=199.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC---CCCC--cchHHHHHHHHHHhhccCeEEE
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APDH--PETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
.+.+++|||||||+||++||.+|++.+++.+|+|||+++.++.. ..+. ..+. .....+..++..+.++.++.++
T Consensus 33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~-~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~ 111 (588)
T 3ics_A 33 RWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFA-NCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIR 111 (588)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC-GGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEE
T ss_pred cccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcccc-CCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEE
Confidence 45678999999999999999999999555999999999876521 1110 0111 1111223345556667788887
Q ss_pred eceEece------EEEec---cc---ccccCEEEEccCCCCCCCCCCCCC-CCCCeeechhhHHHhc--CCCCCCCCCCC
Q 014990 91 GNVTLGS------SVSLS---EL---RQLYHVVVLAYGAESDRALGIPGE-DLIGVHSAREFVWWYN--GHPDGKNLSPD 155 (415)
Q Consensus 91 ~~~~v~~------~v~~~---~~---~~~~d~lvlAtG~~~~~~~~i~g~-~~~~v~~~~~~~~~~~--~~~~~~~~~~~ 155 (415)
.+..+.. .+.+. .. ...||+||+|||+ .|+.|++||. +.+++++...+..... ....
T Consensus 112 ~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~-~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~------- 183 (588)
T 3ics_A 112 VLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA-KPIVPSIPGIEEAKALFTLRNVPDTDRIKAYID------- 183 (588)
T ss_dssp CSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE-EECCCCCTTTTTCTTEEECSSHHHHHHHHHHHH-------
T ss_pred ECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC-CCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHh-------
Confidence 7766521 23332 12 3479999999999 7888899998 6777776654332210 0000
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeE
Q 014990 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (415)
Q Consensus 156 ~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~ 235 (415)
-..+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+...+..
T Consensus 184 ~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~-------------- 228 (588)
T 3ics_A 184 EKKPRHATVIGGGFIGVEMVENLRE--------------------RG-IEVTLVEMANQVMPPIDY-------------- 228 (588)
T ss_dssp HHCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSCTTSCH--------------
T ss_pred hcCCCeEEEECCCHHHHHHHHHHHh--------------------CC-CeEEEEecCCcccccCCH--------------
Confidence 0147999999999999999999986 34 589999988754322111
Q ss_pred EEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec
Q 014990 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (415)
Q Consensus 236 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~ 315 (415)
. +...+.+.+. +.||+++++..+.++. . ++. .+.+.
T Consensus 229 ---------------~-----~~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~--~~~--~v~~~----- 264 (588)
T 3ics_A 229 ---------------E-----MAAYVHEHMK-------------NHDVELVFEDGVDALE--E--NGA--VVRLK----- 264 (588)
T ss_dssp ---------------H-----HHHHHHHHHH-------------HTTCEEECSCCEEEEE--G--GGT--EEEET-----
T ss_pred ---------------H-----HHHHHHHHHH-------------HcCCEEEECCeEEEEe--c--CCC--EEEEC-----
Confidence 1 1112222332 5689999999888886 3 221 33331
Q ss_pred CCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc----
Q 014990 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR---- 391 (415)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~---- 391 (415)
+| +++++|.||+|+|++|+. ++.+..|+.++++|++.+|+. ++|+.|||||+|||+.
T Consensus 265 -----------~g--~~i~~D~Vi~a~G~~p~~----~~l~~~g~~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~ 325 (588)
T 3ics_A 265 -----------SG--SVIQTDMLILAIGVQPES----SLAKGAGLALGVRGTIKVNEK--FQTSDPHIYAIGDAIEVKDF 325 (588)
T ss_dssp -----------TS--CEEECSEEEECSCEEECC----HHHHHTTCCBCGGGCBCCCTT--SBCSSTTEEECGGGBCEEBT
T ss_pred -----------CC--CEEEcCEEEEccCCCCCh----HHHHhcCceEcCCCCEEECCc--cccCCCCEEEeeeeeecccc
Confidence 23 279999999999999975 344566788888999999987 8999999999999983
Q ss_pred --CC---ccchhhhhhhHHHHHhhccc
Q 014990 392 --GP---TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 392 --~~---~~~~~~a~~~g~~~a~~i~~ 413 (415)
+. ......|+.||+.+|.+|..
T Consensus 326 ~~g~~~~~~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 326 VTETETMIPLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp TTCCEECCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCcccccccHHHHHHHHHHHHHHhcC
Confidence 21 23455799999999999875
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=258.26 Aligned_cols=290 Identities=17% Similarity=0.170 Sum_probs=192.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cc--cCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VR--SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
.++|+|||||+||+++|..|++.+.+.+|+|||+.+..+.. .. .....+......+.....+.+++.+++++.++.+
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 57999999999999999999999944489999998754311 10 0111111111111111123345678988887654
Q ss_pred c------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCC---eeechhh--HHHhcCCCCCCCCCCCCCCCCeEE
Q 014990 96 G------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIG---VHSAREF--VWWYNGHPDGKNLSPDLKSTDTAV 163 (415)
Q Consensus 96 ~------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~---v~~~~~~--~~~~~~~~~~~~~~~~~~~~k~V~ 163 (415)
. +.+.+.++ ...||+||+|||+ .|+.|++||.+.++ +++.... ...+... +..+++|+
T Consensus 84 ~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~---------l~~~~~vv 153 (431)
T 1q1r_A 84 TAINRDRQQVILSDGRALDYDRLVLATGG-RPRPLPVASGAVGKANNFRYLRTLEDAECIRRQ---------LIADNRLV 153 (431)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCE-EECCCGGGTTHHHHSTTEEESSSHHHHHHHHHT---------CCTTCEEE
T ss_pred EEEECCCCEEEECCCCEEECCEEEEcCCC-CccCCCCCCcccCCCceEEEECCHHHHHHHHHH---------hhcCCeEE
Confidence 2 23555444 3589999999999 78888899876444 6543222 1122211 22589999
Q ss_pred EEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccC
Q 014990 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (415)
Q Consensus 164 VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (415)
|||+|.+|+|+|..|.+ .+ .+|+++.+.+.+......+++
T Consensus 154 ViGgG~~g~E~A~~l~~--------------------~G-~~Vtlv~~~~~~l~~~~~~~~------------------- 193 (431)
T 1q1r_A 154 VIGGGYIGLEVAATAIK--------------------AN-MHVTLLDTAARVLERVTAPPV------------------- 193 (431)
T ss_dssp EECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSTTTTTSCHHH-------------------
T ss_pred EECCCHHHHHHHHHHHh--------------------CC-CEEEEEEeCCccccchhhHHH-------------------
Confidence 99999999999999986 34 589999988654221111111
Q ss_pred CCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCC-CCCCeeeEEEeeeeecCCCCCcc
Q 014990 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE-RSGHVSGVHFEKTALKGGGPGKQ 322 (415)
Q Consensus 244 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~-~~~~v~~v~~~~~~~~~~~~g~~ 322 (415)
...+.+.+. +.||+++++..+.++. .. +++.+..+.+.
T Consensus 194 --------------~~~l~~~l~-------------~~GV~i~~~~~v~~i~--~~~~~~~v~~v~~~------------ 232 (431)
T 1q1r_A 194 --------------SAFYEHLHR-------------EAGVDIRTGTQVCGFE--MSTDQQKVTAVLCE------------ 232 (431)
T ss_dssp --------------HHHHHHHHH-------------HHTCEEECSCCEEEEE--ECTTTCCEEEEEET------------
T ss_pred --------------HHHHHHHHH-------------hCCeEEEeCCEEEEEE--eccCCCcEEEEEeC------------
Confidence 111222222 5589999999888886 20 13445444432
Q ss_pred eeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCcc-------
Q 014990 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG------- 395 (415)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~------- 395 (415)
+| ++++||.||+|+|++|+. ++....|+.++ +| +.+|+. ++|+.|+|||+|||+..+..
T Consensus 233 ----~G--~~i~~D~Vv~a~G~~p~~----~l~~~~gl~~~-~g-i~Vd~~--~~ts~~~IyA~GD~~~~~~~~~g~~~~ 298 (431)
T 1q1r_A 233 ----DG--TRLPADLVIAGIGLIPNC----ELASAAGLQVD-NG-IVINEH--MQTSDPLIMAVGDCARFHSQLYDRWVR 298 (431)
T ss_dssp ----TS--CEEECSEEEECCCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEEEETTTTEEEE
T ss_pred ----CC--CEEEcCEEEECCCCCcCc----chhhccCCCCC-CC-EEECCC--cccCCCCEEEEEeEEEEccccCCceEe
Confidence 22 379999999999999965 34455666665 45 889886 88999999999999864421
Q ss_pred --chhhhhhhHHHHHhhccc
Q 014990 396 --IIATNLYCAEETVSSLSL 413 (415)
Q Consensus 396 --~~~~a~~~g~~~a~~i~~ 413 (415)
....|+.||+.+|.+|..
T Consensus 299 ~~~~~~A~~qg~~aa~~i~g 318 (431)
T 1q1r_A 299 IESVPNALEQARKIAAILCG 318 (431)
T ss_dssp CCSHHHHHHHHHHHHHHHTT
T ss_pred eCHHHHHHHHHHHHHHHhcC
Confidence 234799999999999864
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=257.40 Aligned_cols=284 Identities=14% Similarity=0.161 Sum_probs=190.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------cCCCC--CCcch
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAP--DHPET 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~~~~~--~~~~~ 71 (415)
.++|+|||||+||+++|..|++.+ .+|+|||+.+.+||... +++.. .....
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~ 83 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI 83 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 578999999999999999999998 99999999877765321 11100 00111
Q ss_pred HHHH-----------HHHHHHhhccCeEEEeceEec---eEEEe--cc-------------cccccCEEEEccCCCCCCC
Q 014990 72 KIVI-----------NQFSRVVQHERCSFFGNVTLG---SSVSL--SE-------------LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 72 ~~~~-----------~~~~~~~~~~~~~~~~~~~v~---~~v~~--~~-------------~~~~~d~lvlAtG~~~~~~ 122 (415)
..+. ..+...++..+++++.+..+. ..+.+ .+ ....||+||+|||+ .|+.
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs-~p~~ 162 (482)
T 1ojt_A 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGS-RVTK 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCE-EECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCC-CCCC
Confidence 1111 123345566788888776432 12222 12 23579999999999 5666
Q ss_pred CC-CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcC
Q 014990 123 LG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (415)
Q Consensus 123 ~~-i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 201 (415)
|+ ++ .+. .+.+..++.. . ...+++|+|||+|.+|+|+|..|.+ .
T Consensus 163 ~~~i~-~~~-~v~~~~~~~~----~---------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~ 207 (482)
T 1ojt_A 163 LPFIP-EDP-RIIDSSGALA----L---------KEVPGKLLIIGGGIIGLEMGTVYST--------------------L 207 (482)
T ss_dssp CSSCC-CCT-TEECHHHHTT----C---------CCCCSEEEEESCSHHHHHHHHHHHH--------------------H
T ss_pred CCCCC-ccC-cEEcHHHHhc----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------c
Confidence 55 55 222 4555444321 1 1147999999999999999999986 3
Q ss_pred CcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce
Q 014990 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (415)
Q Consensus 202 ~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (415)
+ .+|+++.|++.+...+. + + +...+.+.+. +.
T Consensus 208 G-~~Vtlv~~~~~~l~~~~-~----------------------------~-----~~~~l~~~l~-------------~~ 239 (482)
T 1ojt_A 208 G-SRLDVVEMMDGLMQGAD-R----------------------------D-----LVKVWQKQNE-------------YR 239 (482)
T ss_dssp T-CEEEEECSSSSSSTTSC-H----------------------------H-----HHHHHHHHHG-------------GG
T ss_pred C-CeEEEEEECCccccccC-H----------------------------H-----HHHHHHHHHH-------------hc
Confidence 4 58999999875432111 1 1 1111222221 67
Q ss_pred eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcc--cCCCC
Q 014990 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPF--DNHKG 359 (415)
Q Consensus 282 ~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~--~~~~g 359 (415)
||+++++..+.++. . ++....+++.+. .++++++++|.||+|+|++|+. ++ .+..|
T Consensus 240 gV~i~~~~~v~~i~--~--~~~~~~v~~~~~--------------~~~g~~~~~D~vv~a~G~~p~~----~~l~~~~~g 297 (482)
T 1ojt_A 240 FDNIMVNTKTVAVE--P--KEDGVYVTFEGA--------------NAPKEPQRYDAVLVAAGRAPNG----KLISAEKAG 297 (482)
T ss_dssp EEEEECSCEEEEEE--E--ETTEEEEEEESS--------------SCCSSCEEESCEEECCCEEECG----GGTTGGGTT
T ss_pred CCEEEECCEEEEEE--E--cCCeEEEEEecc--------------CCCceEEEcCEEEECcCCCcCC----CCCChhhcC
Confidence 99999999999886 3 322223443320 1112368899999999999976 22 35667
Q ss_pred ccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 360 ~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+.++++|++.+|++ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 298 l~~~~~G~i~vd~~--~~t~~~~IyA~GD~~~~~~-l~~~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 298 VAVTDRGFIEVDKQ--MRTNVPHIYAIGDIVGQPM-LAHKAVHEGHVAAENCAG 348 (482)
T ss_dssp CCCCTTSCCCCCTT--SBCSSTTEEECGGGTCSSC-CHHHHHHHHHHHHHHHTT
T ss_pred ceeCCCCCEeeCCC--cccCCCCEEEEEcccCCCc-cHHHHHHHHHHHHHHHcC
Confidence 88888899999986 8899999999999986554 455799999999999864
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=252.00 Aligned_cols=276 Identities=19% Similarity=0.223 Sum_probs=189.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHH-------HHHHHhhccCeEEE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN-------QFSRVVQHERCSFF 90 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 90 (415)
..++|+|||||+||+++|..|++.+++.+|+|||+.+.++.. . +. ..+.+.. .+. .+++.+++++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~----~-~~--~~~~~~~~~~~~~~~~~-~~~~~~v~~~ 77 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD----R-PP--LSKDFMAHGDAEKIRLD-CKRAPEVEWL 77 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC----S-GG--GGTHHHHHCCGGGSBCC-CTTSCSCEEE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCccc----C-CC--CCHHHhCCCchhhhhHH-HHHHCCCEEE
Confidence 568999999999999999999999944579999998764311 1 00 0011110 001 3456688888
Q ss_pred eceEec------eEEEeccc-ccccCEEEEccCCCCCCCCCC-CCCCCCCeeechhhH--HHhcCCCCCCCCCCCCCCCC
Q 014990 91 GNVTLG------SSVSLSEL-RQLYHVVVLAYGAESDRALGI-PGEDLIGVHSAREFV--WWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 91 ~~~~v~------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i-~g~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~k 160 (415)
.++.+. +.+.+.++ ...||+||+|||+ .|+.|++ ||.+ +++++..... ..+... +..++
T Consensus 78 ~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~i~~G~~-~~v~~~~~~~~~~~l~~~---------~~~~~ 146 (408)
T 2gqw_A 78 LGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGA-APRALPTLQGAT-MPVHTLRTLEDARRIQAG---------LRPQS 146 (408)
T ss_dssp ETCCEEEEETTTTEEEETTSCEEECSEEEECCCE-EECCCGGGTTCS-SCEEECCSHHHHHHHHTT---------CCTTC
T ss_pred cCCEEEEEECCCCEEEECCCCEEECCEEEECCCC-CCCCCCccCCCC-CcEEEECCHHHHHHHHHH---------hhcCC
Confidence 886431 23555444 3589999999999 7888888 9987 6776543322 222221 22589
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|.+|+|+|..|.+ .+ .+|+++.+++.+.....++++
T Consensus 147 ~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~~~---------------- 189 (408)
T 2gqw_A 147 RLLIVGGGVIGLELAATART--------------------AG-VHVSLVETQPRLMSRAAPATL---------------- 189 (408)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSSSSTTTSCHHH----------------
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------CC-CEEEEEEeCCcccccccCHHH----------------
Confidence 99999999999999999986 34 589999998754321111111
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
...+.+.+. +.||+++++..+.++. ++ .+++.
T Consensus 190 -----------------~~~l~~~l~-------------~~GV~i~~~~~v~~i~-----~~---~v~~~---------- 221 (408)
T 2gqw_A 190 -----------------ADFVARYHA-------------AQGVDLRFERSVTGSV-----DG---VVLLD---------- 221 (408)
T ss_dssp -----------------HHHHHHHHH-------------HTTCEEEESCCEEEEE-----TT---EEEET----------
T ss_pred -----------------HHHHHHHHH-------------HcCcEEEeCCEEEEEE-----CC---EEEEC----------
Confidence 112222332 5689999998888874 22 34331
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc------
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT------ 394 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~------ 394 (415)
+| ++++||.||+|+|++|+. ++....|+..+ +| +.+|++ ++|+.|+|||+|||+..+.
T Consensus 222 ------~g--~~i~~D~vi~a~G~~p~~----~l~~~~gl~~~-~g-i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~g~~ 285 (408)
T 2gqw_A 222 ------DG--TRIAADMVVVGIGVLAND----ALARAAGLACD-DG-IFVDAY--GRTTCPDVYALGDVTRQRNPLSGRF 285 (408)
T ss_dssp ------TS--CEEECSEEEECSCEEECC----HHHHHHTCCBS-SS-EECCTT--CBCSSTTEEECGGGEEEEETTTTEE
T ss_pred ------CC--CEEEcCEEEECcCCCccH----HHHHhCCCCCC-CC-EEECCC--CccCCCCEEEEEEEEEecCccCCce
Confidence 23 379999999999999975 34444566665 56 999986 8899999999999986442
Q ss_pred ---cchhhhhhhHHHHHhhccc
Q 014990 395 ---GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 395 ---~~~~~a~~~g~~~a~~i~~ 413 (415)
.....|+.||+.+|.+|..
T Consensus 286 ~~~~~~~~A~~~g~~aa~~i~g 307 (408)
T 2gqw_A 286 ERIETWSNAQNQGIAVARHLVD 307 (408)
T ss_dssp ECCCCHHHHHHHHHHHHHHHHC
T ss_pred eeccHHHHHHHHHHHHHHHhcC
Confidence 1344799999999999864
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=255.19 Aligned_cols=290 Identities=17% Similarity=0.197 Sum_probs=191.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC---C------CCCCccc-------------------------c
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---P------TPFGLVR-------------------------S 62 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~---~------~~gg~~~-------------------------~ 62 (415)
+..++|+||||||||+++|..|++.| .+|+|||+. + .+||.+. +
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~ 84 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNG--ARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY 84 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--CEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999 999999942 1 2555421 2
Q ss_pred CCCC---CCcchHHHHH-----------HHHHHhhccCeEEEeceEec-----eEEEeccc--ccccCEEEEccCCCCCC
Q 014990 63 GVAP---DHPETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDR 121 (415)
Q Consensus 63 ~~~~---~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~--~~~~d~lvlAtG~~~~~ 121 (415)
++.. .......+.. .....++..+++++.+...- ..+...+. ...||+||||||+ .|+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs-~p~ 163 (483)
T 3dgh_A 85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGG-RPR 163 (483)
T ss_dssp TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCE-EEC
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCC-CcC
Confidence 2211 0111112211 12233455678887665431 12333333 3589999999998 788
Q ss_pred CCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcC
Q 014990 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (415)
Q Consensus 122 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 201 (415)
.|++||.+.. ..++.++.. . ...+++|+|||+|.+|+|+|..|.+ .
T Consensus 164 ~p~i~G~~~~-~~~~~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~ 209 (483)
T 3dgh_A 164 YPDIPGAVEY-GITSDDLFS----L---------DREPGKTLVVGAGYIGLECAGFLKG--------------------L 209 (483)
T ss_dssp CCSSTTHHHH-CBCHHHHTT----C---------SSCCCEEEEECCSHHHHHHHHHHHH--------------------T
T ss_pred CCCCCCcccc-cCcHHHHhh----h---------hhcCCcEEEECCCHHHHHHHHHHHH--------------------c
Confidence 8899987532 233333221 1 1147899999999999999999986 3
Q ss_pred CcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce
Q 014990 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (415)
Q Consensus 202 ~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (415)
+ .+|+++.|+.. ...+ +++ +...+.+.+. +.
T Consensus 210 g-~~Vtlv~~~~~-l~~~-d~~---------------------------------~~~~l~~~l~-------------~~ 240 (483)
T 3dgh_A 210 G-YEPTVMVRSIV-LRGF-DQQ---------------------------------MAELVAASME-------------ER 240 (483)
T ss_dssp T-CEEEEEESSCS-STTS-CHH---------------------------------HHHHHHHHHH-------------HT
T ss_pred C-CEEEEEeCCCC-Cccc-CHH---------------------------------HHHHHHHHHH-------------hC
Confidence 4 58999988532 1111 111 1112223332 56
Q ss_pred eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcc
Q 014990 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361 (415)
Q Consensus 282 ~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~ 361 (415)
||+++++..+.++. ..+++.+ .+++.+. . +++..++++|.||+|+|++|+. ..+. ....|+.
T Consensus 241 Gv~i~~~~~v~~i~--~~~~~~~-~v~~~~~--------~-----~~~~~~~~~D~vi~a~G~~p~~-~~l~-l~~~gl~ 302 (483)
T 3dgh_A 241 GIPFLRKTVPLSVE--KQDDGKL-LVKYKNV--------E-----TGEESEDVYDTVLWAIGRKGLV-DDLN-LPNAGVT 302 (483)
T ss_dssp TCCEEETEEEEEEE--ECTTSCE-EEEEEET--------T-----TCCEEEEEESEEEECSCEEECC-GGGT-GGGTTCC
T ss_pred CCEEEeCCEEEEEE--EcCCCcE-EEEEecC--------C-----CCceeEEEcCEEEECcccccCc-CcCC-chhcCcc
Confidence 89999999888886 3123333 3555431 1 3455689999999999999975 1111 1456788
Q ss_pred ccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 362 PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 362 ~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+++ |++.+|++ ++|+.|||||+|||+.+.......|+.||+.+|.+|..
T Consensus 303 ~~~-G~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g 351 (483)
T 3dgh_A 303 VQK-DKIPVDSQ--EATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYG 351 (483)
T ss_dssp CBT-TBBCCCTT--CBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHS
T ss_pred ccC-CEEEECcC--CccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcC
Confidence 887 99999987 78999999999999855445566799999999999864
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=257.68 Aligned_cols=290 Identities=14% Similarity=0.155 Sum_probs=189.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC--------CCCCccc-------------------------cCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGLVR-------------------------SGV 64 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~--------~~gg~~~-------------------------~~~ 64 (415)
..++|+||||||||+++|..|++.| .+|+|||+.+ .+||... +++
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~ 108 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYG--KKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGW 108 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCc
Confidence 4689999999999999999999999 9999999864 5666421 121
Q ss_pred CC---CCcchHHHHH-----------HHHHHhhccCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCC
Q 014990 65 AP---DHPETKIVIN-----------QFSRVVQHERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 65 ~~---~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.. .......+.. .+...++..+++++.+...- ..+...++ ...||+||||||+ .|+.
T Consensus 109 ~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs-~p~~ 187 (519)
T 3qfa_A 109 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGE-RPRY 187 (519)
T ss_dssp CCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCE-EECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCC-CcCC
Confidence 11 0111111111 12234555688887775431 12333333 3579999999999 7888
Q ss_pred CCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC
Q 014990 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (415)
Q Consensus 123 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (415)
|++||.+. .+.+..++.. . ...+++|+|||+|++|+|+|..|.+ .+
T Consensus 188 p~i~G~~~-~~~t~~~~~~----l---------~~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G 233 (519)
T 3qfa_A 188 LGIPGDKE-YCISSDDLFS----L---------PYCPGKTLVVGASYVALECAGFLAG--------------------IG 233 (519)
T ss_dssp CCCTTHHH-HCBCHHHHTT----C---------SSCCCSEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CCCCCccC-ceEcHHHHhh----h---------hhcCCeEEEECCcHHHHHHHHHHHH--------------------cC
Confidence 89998642 2333333221 1 1146789999999999999999986 34
Q ss_pred cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCcee
Q 014990 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (415)
Q Consensus 203 ~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (415)
.+|+++.|+. +...+ ++++ ...+.+.+. +.|
T Consensus 234 -~~Vtlv~~~~-~l~~~-d~~~---------------------------------~~~~~~~l~-------------~~G 264 (519)
T 3qfa_A 234 -LDVTVMVRSI-LLRGF-DQDM---------------------------------ANKIGEHME-------------EHG 264 (519)
T ss_dssp -CCEEEEESSC-SSTTS-CHHH---------------------------------HHHHHHHHH-------------HTT
T ss_pred -CeEEEEeccc-ccccC-CHHH---------------------------------HHHHHHHHH-------------HCC
Confidence 5899998853 21111 1111 112222232 568
Q ss_pred EEEEeccccccccccCCCCC--CeeeEEEeeeeecCCCCCcceeccCC-ceEEEecCeeEEeeccCCccCCCCcccCCCC
Q 014990 283 LHFVFFRKPDSFLESNERSG--HVSGVHFEKTALKGGGPGKQYAVGTG-EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (415)
Q Consensus 283 v~~~~~~~~~~v~~~~~~~~--~v~~v~~~~~~~~~~~~g~~~~~~~g-~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g 359 (415)
|+++++..+.++. ...++ ....+++... .+ +..++++|.||+|+|++|+. ..+. ....|
T Consensus 265 V~v~~~~~v~~v~--~~~~~~~~~~~v~~~~~--------------~g~~~~~~~~D~vi~a~G~~p~~-~~l~-l~~~g 326 (519)
T 3qfa_A 265 IKFIRQFVPIKVE--QIEAGTPGRLRVVAQST--------------NSEEIIEGEYNTVMLAIGRDACT-RKIG-LETVG 326 (519)
T ss_dssp CEEEESEEEEEEE--EEECCTTCEEEEEEEES--------------SSSCEEEEEESEEEECSCEEESC-SSSC-STTTT
T ss_pred CEEEeCCeEEEEE--EccCCCCceEEEEEEEC--------------CCcEEEEEECCEEEEecCCcccC-CCCC-hhhcC
Confidence 9999987777665 20111 1112322211 22 33578999999999999976 2121 35667
Q ss_pred cccc-CCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 360 IVPN-IRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 360 ~~~~-~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+.++ ++|++.+|++ ++|+.|||||+|||+.+.......|+.||+.+|.+|..
T Consensus 327 l~~~~~~G~I~Vd~~--~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g 379 (519)
T 3qfa_A 327 VKINEKTGKIPVTDE--EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 379 (519)
T ss_dssp CCCCTTTCCBCCCTT--SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHS
T ss_pred cEEcCCCCeEeeCCC--CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 8887 5799999987 88999999999999855555666899999999999863
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=254.87 Aligned_cols=283 Identities=14% Similarity=0.144 Sum_probs=191.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------cCCCCC--Ccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPD--HPE 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~~~~~~--~~~ 70 (415)
+.++|+|||||+||+++|.+|++.+ .+|+|||+. .+||.+. +++... ...
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFG--KRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLD 79 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CC
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCC--CcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence 4689999999999999999999998 999999998 4565421 111100 001
Q ss_pred hHHH-----------HHHHHHHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 014990 71 TKIV-----------INQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (415)
Q Consensus 71 ~~~~-----------~~~~~~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~ 136 (415)
...+ ...+...++..+++++.+... .+.+.++.....||+||+|||+ .|+.|++||.+ .+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs-~p~~p~i~G~~--~~~~~ 156 (463)
T 2r9z_A 80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGG-RPIVPRLPGAE--LGITS 156 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCE-EECCCSCTTGG--GSBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCC-CCCCCCCCCcc--ceecH
Confidence 1111 112233445678888877543 1234443334589999999999 67888899873 34444
Q ss_pred hhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCccc
Q 014990 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (415)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~ 216 (415)
.++.. +. ..+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+.
T Consensus 157 ~~~~~-~~------------~~~~~vvVvGgG~~g~e~A~~l~~--------------------~G-~~Vtlv~~~~~~l 202 (463)
T 2r9z_A 157 DGFFA-LQ------------QQPKRVAIIGAGYIGIELAGLLRS--------------------FG-SEVTVVALEDRLL 202 (463)
T ss_dssp HHHHH-CS------------SCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSS
T ss_pred HHHhh-hh------------ccCCEEEEECCCHHHHHHHHHHHh--------------------cC-CEEEEEEcCCccc
Confidence 44332 10 147899999999999999999986 34 5899999986542
Q ss_pred CCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccc
Q 014990 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (415)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~ 296 (415)
..+.. + ....+.+.+. +.||+++++..+.++.
T Consensus 203 ~~~~~-~---------------------------------~~~~l~~~l~-------------~~gv~i~~~~~v~~i~- 234 (463)
T 2r9z_A 203 FQFDP-L---------------------------------LSATLAENMH-------------AQGIETHLEFAVAALE- 234 (463)
T ss_dssp TTSCH-H---------------------------------HHHHHHHHHH-------------HTTCEEESSCCEEEEE-
T ss_pred cccCH-H---------------------------------HHHHHHHHHH-------------HCCCEEEeCCEEEEEE-
Confidence 21111 1 1111222222 5689999999888886
Q ss_pred cCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCC
Q 014990 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDS 376 (415)
Q Consensus 297 ~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~ 376 (415)
. +++. ..+++. +|+. ++++|.||+|+|++|+. ..+. ....|+.++++|++.+|+. +
T Consensus 235 -~-~~~~-~~v~~~----------------~G~~-~i~~D~vv~a~G~~p~~-~~l~-~~~~g~~~~~~G~i~vd~~--~ 290 (463)
T 2r9z_A 235 -R-DAQG-TTLVAQ----------------DGTR-LEGFDSVIWAVGRAPNT-RDLG-LEAAGIEVQSNGMVPTDAY--Q 290 (463)
T ss_dssp -E-ETTE-EEEEET----------------TCCE-EEEESEEEECSCEEESC-TTSC-HHHHTCCCCTTSCCCCCTT--S
T ss_pred -E-eCCe-EEEEEe----------------CCcE-EEEcCEEEECCCCCcCC-CCCC-chhcCCccCCCCCEeECCC--C
Confidence 3 2222 223221 3332 69999999999999965 1111 2344677788899999987 7
Q ss_pred CcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 377 SQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 377 ~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|+.|||||+|||...+. ....|+.||+.+|.+|..
T Consensus 291 ~t~~~~Iya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 291 NTNVPGVYALGDITGRDQ-LTPVAIAAGRRLAERLFD 326 (463)
T ss_dssp BCSSTTEEECGGGGTSCC-CHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCEEEEeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 899999999999986543 455799999999999863
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=258.66 Aligned_cols=283 Identities=15% Similarity=0.148 Sum_probs=191.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------cCCCC--CCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAP--DHPE 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~~~~~--~~~~ 70 (415)
..++|+|||||+||+++|..|++.| .+|+|||+ +.+||.+. +++.. ....
T Consensus 4 ~~~DVvVIGaG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T 4dna_A 4 FDYDLFVIGGGSGGVRSGRLAAALG--KKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFD 80 (463)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTT--CCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEEC
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCC--CEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcC
Confidence 3579999999999999999999999 99999999 56676321 11100 0001
Q ss_pred hH-----------HHHHHHHHHhhccCeEEEeceEe---ceEEEe--cccccccCEEEEccCCCCCC-CCCCCCCCCCCe
Q 014990 71 TK-----------IVINQFSRVVQHERCSFFGNVTL---GSSVSL--SELRQLYHVVVLAYGAESDR-ALGIPGEDLIGV 133 (415)
Q Consensus 71 ~~-----------~~~~~~~~~~~~~~~~~~~~~~v---~~~v~~--~~~~~~~d~lvlAtG~~~~~-~~~i~g~~~~~v 133 (415)
.. .+...+...++..+++++.+... ...+.. +.....||+||+|||+ .|. .|++||.+ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~-~p~~~p~i~G~~--~~ 157 (463)
T 4dna_A 81 WAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGG-HPSPHDALPGHE--LC 157 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCE-EECCCTTSTTGG--GC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCC-CcccCCCCCCcc--cc
Confidence 11 12223344556668888877543 223444 2234589999999999 677 88888875 23
Q ss_pred eechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
+++.++.. . ...+++++|||+|.+|+|+|..+.+ .+ .+|+++.+.+
T Consensus 158 ~~~~~~~~----~---------~~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~~Vt~v~~~~ 203 (463)
T 4dna_A 158 ITSNEAFD----L---------PALPESILIAGGGYIAVEFANIFHG--------------------LG-VKTTLIYRGK 203 (463)
T ss_dssp BCHHHHTT----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSS
T ss_pred ccHHHHhh----h---------hcCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCC
Confidence 44333321 1 1147999999999999999999986 34 5899999886
Q ss_pred cccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccc
Q 014990 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (415)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 293 (415)
.+...+.. + +...+.+.+. +.|++++++..+.+
T Consensus 204 ~~l~~~~~-~---------------------------------~~~~l~~~l~-------------~~Gv~i~~~~~v~~ 236 (463)
T 4dna_A 204 EILSRFDQ-D---------------------------------MRRGLHAAME-------------EKGIRILCEDIIQS 236 (463)
T ss_dssp SSSTTSCH-H---------------------------------HHHHHHHHHH-------------HTTCEEECSCCEEE
T ss_pred ccccccCH-H---------------------------------HHHHHHHHHH-------------HCCCEEECCCEEEE
Confidence 54321111 1 1112222332 56899999999888
Q ss_pred ccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccC
Q 014990 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (415)
Q Consensus 294 v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~ 373 (415)
+. . .++....++. . .+| + +++|.||+|+|++|+.. .+. ....|+.++++|++.+|+.
T Consensus 237 i~--~-~~~~~~~v~~-~--------------~~g--~-i~aD~Vv~a~G~~p~~~-~l~-l~~~g~~~~~~G~i~vd~~ 293 (463)
T 4dna_A 237 VS--A-DADGRRVATT-M--------------KHG--E-IVADQVMLALGRMPNTN-GLG-LEAAGVRTNELGAIIVDAF 293 (463)
T ss_dssp EE--E-CTTSCEEEEE-S--------------SSC--E-EEESEEEECSCEEESCT-TSS-TGGGTCCBCTTSCBCCCTT
T ss_pred EE--E-cCCCEEEEEE-c--------------CCC--e-EEeCEEEEeeCcccCCC-CCC-ccccCceECCCCCEeECcC
Confidence 86 3 2222212320 0 023 3 99999999999999752 111 3456788888999999987
Q ss_pred CCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 374 ~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 294 --~~t~~~~iya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 330 (463)
T 4dna_A 294 --SRTSTPGIYALGDVTDRVQ-LTPVAIHEAMCFIETEYK 330 (463)
T ss_dssp --CBCSSTTEEECSGGGSSCC-CHHHHHHHHHHHHHHHHS
T ss_pred --CCCCCCCEEEEEecCCCCC-ChHHHHHHHHHHHHHHcC
Confidence 7899999999999986444 455799999999999864
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=250.64 Aligned_cols=276 Identities=19% Similarity=0.220 Sum_probs=183.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc---cccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
...+|+||||||||+++|..|++.+ +|+|||+++..+.. +.... .+.....++.....+.++..+++++.++.
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g---~V~lie~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~v~~~~g~~ 82 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPYYSKPMLSHYI-AGFIPRNRLFPYSLDWYRKRGIEIRLAEE 82 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS---EEEEECSSSSCCCCSTTHHHHH-TTSSCGGGGCSSCHHHHHHHTEEEECSCC
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC---CEEEEECCCCCccccchhHHHH-hCCCCHHHhccCCHHHHHhCCcEEEECCE
Confidence 3568999999999999999998875 99999998764310 10001 11112222222233445567899888754
Q ss_pred ec------eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHH--hcCCCCCCCCCCCCCCCCeEEEEc
Q 014990 95 LG------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVILG 166 (415)
Q Consensus 95 v~------~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~V~VVG 166 (415)
+. +.++.+.....||+||||||+ .|+.|++|| .+++++...+... +... +.++++|+|||
T Consensus 83 v~~id~~~~~V~~~g~~~~~d~lViATGs-~p~~p~i~G--~~~v~~~~~~~~~~~l~~~---------~~~~~~vvViG 150 (367)
T 1xhc_A 83 AKLIDRGRKVVITEKGEVPYDTLVLATGA-RAREPQIKG--KEYLLTLRTIFDADRIKES---------IENSGEAIIIG 150 (367)
T ss_dssp EEEEETTTTEEEESSCEEECSEEEECCCE-EECCCCSBT--GGGEECCCSHHHHHHHHHH---------HHHHSEEEEEE
T ss_pred EEEEECCCCEEEECCcEEECCEEEECCCC-CCCCCCCCC--cCCEEEEcCHHHHHHHHHH---------hhcCCcEEEEC
Confidence 31 234422234589999999999 788888998 3456554332221 1100 11358999999
Q ss_pred CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCC
Q 014990 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSP 246 (415)
Q Consensus 167 ~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p 246 (415)
+|.+|+|+|..|.+ .+ .+|+++.|++.+.. .+++
T Consensus 151 gG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~--~~~~----------------------- 184 (367)
T 1xhc_A 151 GGFIGLELAGNLAE--------------------AG-YHVKLIHRGAMFLG--LDEE----------------------- 184 (367)
T ss_dssp CSHHHHHHHHHHHH--------------------TT-CEEEEECSSSCCTT--CCHH-----------------------
T ss_pred CCHHHHHHHHHHHh--------------------CC-CEEEEEeCCCeecc--CCHH-----------------------
Confidence 99999999999986 34 58999998865422 1111
Q ss_pred CcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceecc
Q 014990 247 TDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG 326 (415)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~ 326 (415)
....+.+.+. +.||+++++..+.++. . + .+++.
T Consensus 185 ----------~~~~l~~~l~-------------~~gV~i~~~~~v~~i~--~--~----~v~~~---------------- 217 (367)
T 1xhc_A 185 ----------LSNMIKDMLE-------------ETGVKFFLNSELLEAN--E--E----GVLTN---------------- 217 (367)
T ss_dssp ----------HHHHHHHHHH-------------HTTEEEECSCCEEEEC--S--S----EEEET----------------
T ss_pred ----------HHHHHHHHHH-------------HCCCEEEcCCEEEEEE--e--e----EEEEC----------------
Confidence 1122223332 5689999998888774 2 2 23321
Q ss_pred CCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccC--C-ccchhhhhhh
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG--P-TGIIATNLYC 403 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~--~-~~~~~~a~~~ 403 (415)
+| + +++|.||+|+|++|+. ++.+..++..+ +| +.+|++ ++|+.|||||+|||+.. + ......|+.|
T Consensus 218 ~g--~-i~~D~vi~a~G~~p~~----~ll~~~gl~~~-~g-i~Vd~~--~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~q 286 (367)
T 1xhc_A 218 SG--F-IEGKVKICAIGIVPNV----DLARRSGIHTG-RG-ILIDDN--FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQ 286 (367)
T ss_dssp TE--E-EECSCEEEECCEEECC----HHHHHTTCCBS-SS-EECCTT--SBCSSTTEEECGGGEEBTTBCCCSHHHHHHH
T ss_pred CC--E-EEcCEEEECcCCCcCH----HHHHhCCCCCC-CC-EEECCC--cccCCCCEEEeEeeeecCCCCccHHHHHHHH
Confidence 22 3 9999999999999975 34455566665 45 888886 88999999999999742 2 3456689999
Q ss_pred HHHHHhhccc
Q 014990 404 AEETVSSLSL 413 (415)
Q Consensus 404 g~~~a~~i~~ 413 (415)
|+.+|.+|..
T Consensus 287 g~~aa~~i~g 296 (367)
T 1xhc_A 287 ARVLADILKG 296 (367)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 9999999864
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=253.57 Aligned_cols=281 Identities=15% Similarity=0.168 Sum_probs=189.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc----------------------------cCCCCC--
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR----------------------------SGVAPD-- 67 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~----------------------------~~~~~~-- 67 (415)
..++|+||||||||+++|.+|++.+ .+|+|||+ +.+||.+. +++...
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP 80 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHT--CCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCC
Confidence 4589999999999999999999999 99999999 55665421 222110
Q ss_pred CcchHHHHH-----------HHHHHhhccCeEEEeceEec---eEEEecccccccCEEEEccCCCCCCCCC-CCCCCCCC
Q 014990 68 HPETKIVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLSELRQLYHVVVLAYGAESDRALG-IPGEDLIG 132 (415)
Q Consensus 68 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~---~~v~~~~~~~~~d~lvlAtG~~~~~~~~-i~g~~~~~ 132 (415)
......+.. .....++..+++++.+..+. +.+.+++....||+||||||+ .|+.|+ ++. +. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs-~p~~~~~~~~-~~-~ 157 (458)
T 1lvl_A 81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGS-SSVELPMLPL-GG-P 157 (458)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCE-EECCBTTBCC-BT-T
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCC-CCCCCCCCCc-cC-c
Confidence 011112211 12345667789988877542 234554444589999999999 565554 552 22 4
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+.+..++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.++
T Consensus 158 v~~~~~~~~----~---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtlv~~~ 203 (458)
T 1lvl_A 158 VISSTEALA----P---------KALPQHLVVVGGGYIGLELGIAYRK--------------------LG-AQVSVVEAR 203 (458)
T ss_dssp EECHHHHTC----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------HT-CEEEEECSS
T ss_pred EecHHHHhh----h---------hccCCeEEEECcCHHHHHHHHHHHH--------------------CC-CeEEEEEcC
Confidence 555443321 1 1147899999999999999999986 34 589999998
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+.. ..+++ +...+.+.+. +.||+++++..+.
T Consensus 204 ~~~l~-~~~~~---------------------------------~~~~l~~~l~-------------~~gv~i~~~~~v~ 236 (458)
T 1lvl_A 204 ERILP-TYDSE---------------------------------LTAPVAESLK-------------KLGIALHLGHSVE 236 (458)
T ss_dssp SSSST-TSCHH---------------------------------HHHHHHHHHH-------------HHTCEEETTCEEE
T ss_pred Ccccc-ccCHH---------------------------------HHHHHHHHHH-------------HCCCEEEECCEEE
Confidence 75422 11111 1112222232 5689999998888
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . +. +.+.. .+|+.+++++|.||+|+|++|+.. .+ ..+..|+.++++ .+.+|+
T Consensus 237 ~i~----~-~~---v~v~~--------------~~G~~~~i~~D~vv~a~G~~p~~~-~l-~~~~~g~~~~~~-~i~vd~ 291 (458)
T 1lvl_A 237 GYE----N-GC---LLAND--------------GKGGQLRLEADRVLVAVGRRPRTK-GF-NLECLDLKMNGA-AIAIDE 291 (458)
T ss_dssp EEE----T-TE---EEEEC--------------SSSCCCEECCSCEEECCCEEECCS-SS-SGGGSCCCEETT-EECCCT
T ss_pred EEE----e-CC---EEEEE--------------CCCceEEEECCEEEECcCCCcCCC-CC-CcHhcCCcccCC-EEeECC
Confidence 885 2 22 33321 023334799999999999999752 11 134567777766 899998
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
. ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 292 ~--~~t~~~~Iya~GD~~~~~~-~~~~A~~~g~~aa~~i~g 329 (458)
T 1lvl_A 292 R--CQTSMHNVWAIGDVAGEPM-LAHRAMAQGEMVAEIIAG 329 (458)
T ss_dssp T--CBCSSTTEEECGGGGCSSC-CHHHHHHHHHHHHHHHTT
T ss_pred C--CcCCCCCEEEeeccCCCcc-cHHHHHHHHHHHHHHhcC
Confidence 7 7899999999999987554 455799999999999864
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=253.96 Aligned_cols=283 Identities=16% Similarity=0.212 Sum_probs=192.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-CCCCC-----------------------C--cchHH
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPD-----------------------H--PETKI 73 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~~~~~-----------------------~--~~~~~ 73 (415)
++|+||||||||+++|..|++.+ .+|+|||+++.+||.+.. +..|. . .....
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLG--MKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA 79 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCC--CeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHH
Confidence 68999999999999999999998 999999999877765321 11010 0 01111
Q ss_pred H-----------HHHHHHHhhccCeEEEeceEec---eEEEec--ccccccCEEEEccCCCCCCCCCCCCCCCCCeeech
Q 014990 74 V-----------INQFSRVVQHERCSFFGNVTLG---SSVSLS--ELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (415)
Q Consensus 74 ~-----------~~~~~~~~~~~~~~~~~~~~v~---~~v~~~--~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~ 137 (415)
+ ...+...++..+++++.+..+. ..+.+. .....||+||+|||+ .|+.|+++|.+..++++..
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~-~p~~~~~~g~~~~~v~~~~ 158 (455)
T 2yqu_A 80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGS-APLIPPWAQVDYERVVTST 158 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCE-EECCCTTBCCCSSSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCC-CCCCCCCCCCCcCcEechH
Confidence 1 1122445566788888776541 122332 223589999999999 6888888887655666654
Q ss_pred hhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccC
Q 014990 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (415)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~ 217 (415)
++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.+++.+.
T Consensus 159 ~~~~----~---------~~~~~~vvIiGgG~~g~e~A~~l~~--------------------~g-~~V~lv~~~~~~l- 203 (455)
T 2yqu_A 159 EALS----F---------PEVPKRLIVVGGGVIGLELGVVWHR--------------------LG-AEVIVLEYMDRIL- 203 (455)
T ss_dssp HHTC----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSC-
T ss_pred Hhhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEEEecCCccc-
Confidence 4331 1 1146899999999999999999986 34 4799999886532
Q ss_pred CCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccccc
Q 014990 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (415)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 297 (415)
|.... .+...+.+.+. +.||+++++..+.++.
T Consensus 204 ----------------------------~~~~~-----~~~~~l~~~l~-------------~~Gv~i~~~~~V~~i~-- 235 (455)
T 2yqu_A 204 ----------------------------PTMDL-----EVSRAAERVFK-------------KQGLTIRTGVRVTAVV-- 235 (455)
T ss_dssp ----------------------------TTSCH-----HHHHHHHHHHH-------------HHTCEEECSCCEEEEE--
T ss_pred ----------------------------cccCH-----HHHHHHHHHHH-------------HCCCEEEECCEEEEEE--
Confidence 11111 11112222232 5589999999988886
Q ss_pred CCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCC
Q 014990 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (415)
Q Consensus 298 ~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~ 377 (415)
. +++.+ .+++. ++ +++++|.||+|+|++|+.. .+ ..+..|+.++++|++.+|+. ++
T Consensus 236 ~-~~~~v-~v~~~----------------~g--~~i~~D~vv~A~G~~p~~~-~l-~~~~~g~~~~~~g~i~vd~~--~~ 291 (455)
T 2yqu_A 236 P-EAKGA-RVELE----------------GG--EVLEADRVLVAVGRRPYTE-GL-SLENAGLSTDERGRIPVDEH--LR 291 (455)
T ss_dssp E-ETTEE-EEEET----------------TS--CEEEESEEEECSCEEECCT-TC-CGGGGTCCCCTTSCCCCCTT--SB
T ss_pred E-eCCEE-EEEEC----------------CC--eEEEcCEEEECcCCCcCCC-CC-ChhhcCCccCCCCcEeECCC--cc
Confidence 3 22211 22211 12 3799999999999999651 11 12455677777899999987 78
Q ss_pred cccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 378 t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+.|+|||+|||+..+. +...|+.||+.+|.+|..
T Consensus 292 t~~~~iya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 326 (455)
T 2yqu_A 292 TRVPHIYAIGDVVRGPM-LAHKASEEGIAAVEHMVR 326 (455)
T ss_dssp CSSTTEEECGGGSSSCC-CHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEecCCCCcc-CHHHHHHhHHHHHHHHcC
Confidence 99999999999986554 455799999999999863
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=257.40 Aligned_cols=281 Identities=15% Similarity=0.152 Sum_probs=190.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-------------------------cCCCCCC--cch
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-------------------------SGVAPDH--PET 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-------------------------~~~~~~~--~~~ 71 (415)
.++|+|||||+||+++|..|++.| .+|+|||+ +.+||... +++.... ...
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 102 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALG--KRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW 102 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred CCCEEEECcCHHHHHHHHHHHhCc--CEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 579999999999999999999999 99999999 55666421 1221110 011
Q ss_pred H-----------HHHHHHHHHhhccCeEEEeceEe---ceEEEe--cccccccCEEEEccCCCCCC-CCCCCCCCCCCee
Q 014990 72 K-----------IVINQFSRVVQHERCSFFGNVTL---GSSVSL--SELRQLYHVVVLAYGAESDR-ALGIPGEDLIGVH 134 (415)
Q Consensus 72 ~-----------~~~~~~~~~~~~~~~~~~~~~~v---~~~v~~--~~~~~~~d~lvlAtG~~~~~-~~~i~g~~~~~v~ 134 (415)
. .+...+...++..+++++.+... ...+.+ +.....||+||+|||+ .|. .|++||.+ .++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~-~p~~~p~i~G~~--~~~ 179 (484)
T 3o0h_A 103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGA-KIVSNSAIKGSD--LCL 179 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCE-EECCC--CBTGG--GSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCC-CcccCCCCCCcc--ccc
Confidence 1 12223445566678888777543 123444 2234589999999999 677 78888875 233
Q ss_pred echhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+..++.. . ...+++|+|||+|.+|+|+|..+.+ .+ .+|+++.+++.
T Consensus 180 ~~~~~~~----~---------~~~~~~v~ViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~ 225 (484)
T 3o0h_A 180 TSNEIFD----L---------EKLPKSIVIVGGGYIGVEFANIFHG--------------------LG-VKTTLLHRGDL 225 (484)
T ss_dssp CTTTGGG----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSS
T ss_pred cHHHHHh----H---------HhcCCcEEEECcCHHHHHHHHHHHH--------------------cC-CeEEEEECCCc
Confidence 3333321 0 1147899999999999999999986 34 48999998865
Q ss_pred ccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccc
Q 014990 215 VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSF 294 (415)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 294 (415)
+...+.. .+...+.+.+. +.||+++++..+.++
T Consensus 226 ~l~~~~~----------------------------------~~~~~l~~~l~-------------~~Gv~i~~~~~V~~i 258 (484)
T 3o0h_A 226 ILRNFDY----------------------------------DLRQLLNDAMV-------------AKGISIIYEATVSQV 258 (484)
T ss_dssp SSTTSCH----------------------------------HHHHHHHHHHH-------------HHTCEEESSCCEEEE
T ss_pred cccccCH----------------------------------HHHHHHHHHHH-------------HCCCEEEeCCEEEEE
Confidence 4221111 11122223332 568999999999888
Q ss_pred cccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC
Q 014990 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (415)
Q Consensus 295 ~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~ 374 (415)
. . .++.+ .+++. +| +++++|.||+|+|++|+.. .+. ....|+.++++|++.+|+.
T Consensus 259 ~--~-~~~~v-~v~~~----------------~g--~~i~aD~Vi~A~G~~p~~~-~l~-l~~~g~~~~~~G~i~vd~~- 313 (484)
T 3o0h_A 259 Q--S-TENCY-NVVLT----------------NG--QTICADRVMLATGRVPNTT-GLG-LERAGVKVNEFGAVVVDEK- 313 (484)
T ss_dssp E--E-CSSSE-EEEET----------------TS--CEEEESEEEECCCEEECCT-TCC-HHHHTCCBCTTSCBCCCTT-
T ss_pred E--e-eCCEE-EEEEC----------------CC--cEEEcCEEEEeeCCCcCCC-CCC-hhhcCceECCCCCEeECCC-
Confidence 6 4 23333 33321 23 3799999999999999751 111 2345778888899999987
Q ss_pred CCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 375 ~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 314 -~~t~~~~Iya~GD~~~~~~-~~~~A~~~g~~aa~~i~~ 350 (484)
T 3o0h_A 314 -MTTNVSHIWAVGDVTGHIQ-LTPVAIHDAMCFVKNAFE 350 (484)
T ss_dssp -SBCSSTTEEECGGGGTSCC-CHHHHHHHHHHHHHHHHC
T ss_pred -CCCCCCCEEEEEecCCCCc-CHHHHHHHHHHHHHHHcC
Confidence 7899999999999986444 455799999999999864
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=246.50 Aligned_cols=265 Identities=14% Similarity=0.065 Sum_probs=182.1
Q ss_pred CeEEEECCCHHHHHHHHHHHH---cCCCce---EEEEcCCCCCCCccccCCC----------------------------
Q 014990 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQ---VDIIDRLPTPFGLVRSGVA---------------------------- 65 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~---~g~~~~---v~lie~~~~~gg~~~~~~~---------------------------- 65 (415)
++|+|||||+||+++|..|++ .| .+ |+|||+.+.+||.+.+...
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~ 80 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKG--AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLE 80 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTT--CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcc
Confidence 689999999999999999999 88 88 9999999988887764210
Q ss_pred --------------CCCcchHHHHHHHHHHhhccCeE--EEeceEec----------eEEEecc------cccccCEEEE
Q 014990 66 --------------PDHPETKIVINQFSRVVQHERCS--FFGNVTLG----------SSVSLSE------LRQLYHVVVL 113 (415)
Q Consensus 66 --------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~----------~~v~~~~------~~~~~d~lvl 113 (415)
+.+....++.+++.+.+++.++. +..++.|. ..++..+ ....||+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVv 160 (464)
T 2xve_A 81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVC 160 (464)
T ss_dssp BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEE
Confidence 11122345666777777777765 66665441 1344433 2347999999
Q ss_pred ccCC-CCCCCCCCCCCCC-C-CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCc
Q 014990 114 AYGA-ESDRALGIPGEDL-I-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDI 190 (415)
Q Consensus 114 AtG~-~~~~~~~i~g~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~ 190 (415)
|||. ..|+.|++||.+. + .+.++.++.... ...+|+|+|||+|.+|+|+|.+|.+
T Consensus 161 AtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~------------~~~~k~VvVVG~G~sg~eiA~~l~~---------- 218 (464)
T 2xve_A 161 CTGHFSTPYVPEFEGFEKFGGRILHAHDFRDAL------------EFKDKTVLLVGSSYSAEDIGSQCYK---------- 218 (464)
T ss_dssp CCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGG------------GGTTSEEEEECCSTTHHHHHHHHHH----------
T ss_pred CCCCCCCCccCCCCCcccCCceEEehhhhCCHh------------HcCCCEEEEEcCCCCHHHHHHHHHH----------
Confidence 9995 3688889999763 3 355555443211 1268999999999999999999996
Q ss_pred hhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHh
Q 014990 191 ASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAA 270 (415)
Q Consensus 191 ~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 270 (415)
-.++|+++.|++... +..
T Consensus 219 -----------~g~~V~li~~~~~~~-----------------------------~~~---------------------- 236 (464)
T 2xve_A 219 -----------YGAKKLISCYRTAPM-----------------------------GYK---------------------- 236 (464)
T ss_dssp -----------TTCSEEEEECSSCCC-----------------------------CCC----------------------
T ss_pred -----------hCCeEEEEEECCCCC-----------------------------CCC----------------------
Confidence 346899999876421 000
Q ss_pred ccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCC
Q 014990 271 SASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN 350 (415)
Q Consensus 271 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~ 350 (415)
...+|.++ ..+.++. . + +|.+. +|+ ++++|.||+|||++|+.
T Consensus 237 --------~~~~V~~~--~~V~~i~--~--~----~V~~~----------------dG~--~i~~D~Vi~atG~~p~~-- 278 (464)
T 2xve_A 237 --------WPENWDER--PNLVRVD--T--E----NAYFA----------------DGS--SEKVDAIILCTGYIHHF-- 278 (464)
T ss_dssp --------CCTTEEEC--SCEEEEC--S--S----EEEET----------------TSC--EEECSEEEECCCBCCCC--
T ss_pred --------CCCceEEc--CCeEEEe--C--C----EEEEC----------------CCC--EEeCCEEEECCCCCCCC--
Confidence 02346655 4555553 2 2 34432 233 68999999999999964
Q ss_pred CCcccCC-CCccccCCCcee-eccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 351 GLPFDNH-KGIVPNIRGRVL-KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 351 ~~~~~~~-~g~~~~~~G~i~-v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|... .++.++++|++. ..... +.++.|+|||+||+..+. ....|..||+++|.+|..
T Consensus 279 --~~l~~~~gl~~~~~~~v~~~~~~~-~~t~~p~i~aiGd~~~~~--~~~~a~~qa~~~a~~l~G 338 (464)
T 2xve_A 279 --PFLNDDLRLVTNNRLWPLNLYKGV-VWEDNPKFFYIGMQDQWY--SFNMFDAQAWYARDVIMG 338 (464)
T ss_dssp --TTBCTTTCCCCCSSSCCSSEETTT-EESSSTTEEECSCSCCSS--CHHHHHHHHHHHHHHHTT
T ss_pred --CCcCcccccccCCCcccccccceE-ecCCCCCEEEEeCccccc--chHHHHHHHHHHHHHHcC
Confidence 34333 567777665652 22222 568999999999997543 345789999999998864
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=239.38 Aligned_cols=287 Identities=13% Similarity=0.093 Sum_probs=181.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCcccc-----------------CCC---------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRS-----------------GVA--------------- 65 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~~~~-----------------~~~--------------- 65 (415)
.++|+|||||+||+++|..|++.+ . +|+|||+.+ +|+.+.+ +..
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g--~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFG--ITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTF 80 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHHcC--CCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccc
Confidence 578999999999999999999998 8 999999987 5553321 110
Q ss_pred -CCCcchHHHHHHHHHHhhccCeEEEeceEec--------eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeec
Q 014990 66 -PDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSA 136 (415)
Q Consensus 66 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~ 136 (415)
..+....++..++.+.++..+++++.++.+. ..+...+....||+||+|||+. +. |.+|+ ..+.+.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~-~~-p~ip~---~~~~~~ 155 (369)
T 3d1c_A 81 NEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDY-NF-PKKPF---KYGIHY 155 (369)
T ss_dssp CCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCST-TS-BCCCS---SSCEEG
T ss_pred cccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCC-Cc-cCCCC---Cceech
Confidence 0011224555667777777889888876542 2343334446799999999983 33 45665 234444
Q ss_pred hhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCccc
Q 014990 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (415)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~ 216 (415)
..+... ...++++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+.
T Consensus 156 ~~~~~~------------~~~~~~~vvVvG~G~~g~e~a~~l~~--------------------~g-~~V~lv~~~~~~~ 202 (369)
T 3d1c_A 156 SEIEDF------------DNFNKGQYVVIGGNESGFDAAYQLAK--------------------NG-SDIALYTSTTGLN 202 (369)
T ss_dssp GGCSCG------------GGSCSSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECC-----
T ss_pred hhcCCh------------hhcCCCEEEEECCCcCHHHHHHHHHh--------------------cC-CeEEEEecCCCCC
Confidence 332210 01157899999999999999999986 33 5899999986432
Q ss_pred CCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCcee-EEEEecccccccc
Q 014990 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE-LHFVFFRKPDSFL 295 (415)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v~ 295 (415)
.+..+ +. ....+....++.+.+. +.| |+++++..+.++.
T Consensus 203 ~~~~d------------------------~~---~~~~~~~~~~l~~~l~-------------~~g~v~~~~~~~v~~i~ 242 (369)
T 3d1c_A 203 DPDAD------------------------PS---VRLSPYTRQRLGNVIK-------------QGARIEMNVHYTVKDID 242 (369)
T ss_dssp -----------------------------CT---TSCCHHHHHHHHHHHH-------------TTCCEEEECSCCEEEEE
T ss_pred CCCCC------------------------CC---ccCCHHHHHHHHHHHh-------------hCCcEEEecCcEEEEEE
Confidence 10000 00 0001122222333332 555 9999998888885
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. .++ ...+++. +|+. ...+|.||||+|++|+. ++....++. +++|++.+|+.+
T Consensus 243 --~-~~~-~~~v~~~----------------~g~~-~~~~d~vi~a~G~~~~~----~~~~~~~~~-~~~g~i~v~~~~- 295 (369)
T 3d1c_A 243 --F-NNG-QYHISFD----------------SGQS-VHTPHEPILATGFDATK----NPIVQQLFV-TTNQDIKLTTHD- 295 (369)
T ss_dssp --E-ETT-EEEEEES----------------SSCC-EEESSCCEECCCBCGGG----SHHHHHHSC-CTTSCCCBCTTS-
T ss_pred --e-cCC-ceEEEec----------------CCeE-eccCCceEEeeccCCcc----chhhhhhcc-CCCCCEEechhh-
Confidence 2 122 1123331 2332 34579999999999965 121222333 567889998865
Q ss_pred CCcccCCeeeeeccccCCc---cchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPT---GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~---~~~~~a~~~g~~~a~~i~~ 413 (415)
++|++|||||+|||+..+. ..+..+..||+.+|.+|..
T Consensus 296 ~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~ 336 (369)
T 3d1c_A 296 ESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQ 336 (369)
T ss_dssp BBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHH
T ss_pred cccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhc
Confidence 7899999999999985432 1233567889999998853
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-30 Score=257.28 Aligned_cols=300 Identities=13% Similarity=0.099 Sum_probs=181.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec--
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 96 (415)
++|||||||+||+++|.+|++.+++++|+|||+++++.-.. .+.+..+...++++..++.+++++.+++++.+....
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id 82 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID 82 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence 58999999999999999999998889999999988643211 111111222333333445566777899998886553
Q ss_pred ---eEEEecccc-cccCEEEEccCCCCCCCCCCCCCC--CCCee---echhhHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 014990 97 ---SSVSLSELR-QLYHVVVLAYGAESDRALGIPGED--LIGVH---SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (415)
Q Consensus 97 ---~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~--~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~ 167 (415)
+.+++++++ ..||+||||||+ .+. +++||.+ ...+. ++.+....+.. +..++.++|+|+
T Consensus 83 ~~~~~V~~~~g~~i~YD~LViAtG~-~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~----------~~~~~~~vv~gg 150 (430)
T 3hyw_A 83 PDANTVTTQSGKKIEYDYLVIATGP-KLV-FGAEGQEENSTSICTAEHALETQKKLQE----------LYANPGPVVIGA 150 (430)
T ss_dssp TTTTEEEETTCCEEECSEEEECCCC-EEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHH----------HHHSCCCEEEEE
T ss_pred CCCCEEEECCCCEEECCEEEEeCCC-Ccc-CCccCcccCcCCcccHHHHHHHHHHHHh----------hccCCceEEEeC
Confidence 346666654 589999999999 443 4678754 11222 22222222221 112444566665
Q ss_pred ChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCc---ceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCC
Q 014990 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244 (415)
Q Consensus 168 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (415)
+ .|++++..+.+ +...+.+.+++.+. -+++++...+.+. .+..
T Consensus 151 ~-~gve~~~~~~e---------~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~-~~~~----------------------- 196 (430)
T 3hyw_A 151 I-PGVSCFGPAYE---------FALMLHYELKKRGIRYKVPMTFITSEPYLG-HFGV----------------------- 196 (430)
T ss_dssp C-TTCCCCHHHHH---------HHHHHHHHHHHTTCGGGCCEEEECSSSSTT-CTTT-----------------------
T ss_pred C-CcEEEhHHHHH---------HHHHHHHHHHHhcccccceeeeecccchhh-hccc-----------------------
Confidence 4 35544443332 11222223333332 2466665543221 0000
Q ss_pred CCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCccee
Q 014990 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYA 324 (415)
Q Consensus 245 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~ 324 (415)
. . .+..++.+.+.+. ++||+++++..+.++. . + .+.+.+.
T Consensus 197 --~----~-~~~~~~~l~~~l~-------------~~GV~~~~~~~v~~v~--~--~----~~~~~~~------------ 236 (430)
T 3hyw_A 197 --G----G-IGASKRLVEDLFA-------------ERNIDWIANVAVKAIE--P--D----KVIYEDL------------ 236 (430)
T ss_dssp --T----C-STTHHHHHHHHHH-------------HTTCEEECSCEEEEEC--S--S----EEEEECT------------
T ss_pred --h----h-hHHHHHHHHHHHH-------------hCCeEEEeCceEEEEe--C--C----ceEEEee------------
Confidence 0 0 0111222223332 5689999999988885 2 2 3434321
Q ss_pred ccCCceEEEecCeeEEeeccCCccCCCCcccCCCC--ccccCCCceeeccCCCCCcccCCeeeeeccccCC---------
Q 014990 325 VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG--IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP--------- 393 (415)
Q Consensus 325 ~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g--~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~--------- 393 (415)
+|+++++++|+++|++|++|++ +....+ +..+.+|++.+|+++ +.+++|||||+|||+..+
T Consensus 237 --~g~~~~i~~d~vi~~~G~~~~~-----~~~~~~~~l~~~~~g~i~vd~~l-q~t~~~~IfAiGD~a~~p~~~~~~~~~ 308 (430)
T 3hyw_A 237 --NGNTHEVPAKFTMFMPSFQGPE-----VVASAGDKVANPANKMVIVNRCF-QNPTYKNIFGVGVVTAIPPIEKTPIPT 308 (430)
T ss_dssp --TSCEEEEECSEEEEECEEECCH-----HHHTTCTTTBCTTTCCBCCCTTS-BCSSSTTEEECSTTBCCCCSSCCSSCC
T ss_pred --CCCceEeecceEEEeccCCCch-----HHHhcccccccCCceEEEecccc-cCCCCCCEEEeccEEecCCcccCcCcC
Confidence 5667799999999999999965 222222 334556789999874 459999999999998532
Q ss_pred --ccchhhhhhhHHHHHhhccc
Q 014990 394 --TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 --~~~~~~a~~~g~~~a~~i~~ 413 (415)
......|+.||+.+|+||..
T Consensus 309 ~~pk~a~~A~~qg~~~A~Ni~~ 330 (430)
T 3hyw_A 309 GVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 23344699999999999974
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=251.99 Aligned_cols=293 Identities=14% Similarity=0.188 Sum_probs=184.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC-C-------CCCCcc-c------------------------cC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-P-------TPFGLV-R------------------------SG 63 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~-~-------~~gg~~-~------------------------~~ 63 (415)
...++|+||||||||+++|.+|++.| .+|+|||+. + .+||.. . ++
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g--~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYG--AKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccEEEECCCccHHHHHHHHHhCC--CeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 46789999999999999999999999 999999973 2 245421 0 11
Q ss_pred CC-CC---CcchHHHHHHH-----------HHHhhccCeEEEeceEe---ceEEEe--ccc---ccccCEEEEccCCCCC
Q 014990 64 VA-PD---HPETKIVINQF-----------SRVVQHERCSFFGNVTL---GSSVSL--SEL---RQLYHVVVLAYGAESD 120 (415)
Q Consensus 64 ~~-~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v---~~~v~~--~~~---~~~~d~lvlAtG~~~~ 120 (415)
.. +. .....++.+++ ...++..+++++.+... ...+.. .++ ...||+||||||+ .|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs-~p 261 (598)
T 2x8g_A 183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGE-RP 261 (598)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCE-EE
T ss_pred ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCC-CC
Confidence 10 10 11112222221 12244557887755432 112222 222 3579999999998 78
Q ss_pred CCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhc
Q 014990 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (415)
Q Consensus 121 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~ 200 (415)
+.|++||.+. ...+..++. .. ...+++|+|||+|++|+|+|..|.+
T Consensus 262 ~~p~i~G~~~-~~~~~~~~~----~~---------~~~~~~vvViGgG~~g~E~A~~l~~-------------------- 307 (598)
T 2x8g_A 262 KYPEIPGAVE-YGITSDDLF----SL---------PYFPGKTLVIGASYVALECAGFLAS-------------------- 307 (598)
T ss_dssp CCCSSTTHHH-HCEEHHHHT----TC---------SSCCCSEEEECCSHHHHHHHHHHHH--------------------
T ss_pred CCCCCCCccc-ceEcHHHHh----hC---------ccCCCEEEEECCCHHHHHHHHHHHH--------------------
Confidence 8889998642 223333222 11 1146789999999999999999986
Q ss_pred CCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCc
Q 014990 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQ 280 (415)
Q Consensus 201 ~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 280 (415)
.+ .+|+++.|+ .+...+ ++++ ...+.+.+. +
T Consensus 308 ~g-~~Vtlv~~~-~~l~~~-d~~~---------------------------------~~~~~~~l~-------------~ 338 (598)
T 2x8g_A 308 LG-GDVTVMVRS-ILLRGF-DQQM---------------------------------AEKVGDYME-------------N 338 (598)
T ss_dssp TT-CCEEEEESS-CSSTTS-CHHH---------------------------------HHHHHHHHH-------------H
T ss_pred cC-CEEEEEECC-cCcCcC-CHHH---------------------------------HHHHHHHHH-------------h
Confidence 44 479999987 321111 1111 111222222 5
Q ss_pred eeEEEEeccccccccccCC-----CCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCccc
Q 014990 281 RELHFVFFRKPDSFLESNE-----RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFD 355 (415)
Q Consensus 281 ~~v~~~~~~~~~~v~~~~~-----~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~ 355 (415)
.||+++++..+.++. .. .++....+.+... ..+|+..++++|.||+|+|++|+. ..+. .
T Consensus 339 ~gv~i~~~~~v~~v~--~~~~~~~~~~~~~~~~v~~~------------~~~g~~~~~~~D~vi~a~G~~p~~-~~l~-~ 402 (598)
T 2x8g_A 339 HGVKFAKLCVPDEIK--QLKVVDTENNKPGLLLVKGH------------YTDGKKFEEEFETVIFAVGREPQL-SKVL-C 402 (598)
T ss_dssp TTCEEEETEEEEEEE--EEECCBTTTTBCCEEEEEEE------------ETTSCEEEEEESEEEECSCEEECG-GGTB-C
T ss_pred CCCEEEECCeEEEEE--eccccccccCCCceEEEEEE------------eCCCcEEeccCCEEEEEeCCcccc-CccC-c
Confidence 589999887776663 10 0111112222110 013444456799999999999976 1111 2
Q ss_pred CCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 356 ~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
...|+.++++|++.+|+. ++|+.|||||+|||+.+.......|+.||+.+|.+|..
T Consensus 403 ~~~gl~~~~~G~i~vd~~--~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 458 (598)
T 2x8g_A 403 ETVGVKLDKNGRVVCTDD--EQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFA 458 (598)
T ss_dssp GGGCCCBCTTSCBCCCTT--SBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hhcCceECCCCcEEeCCC--CcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhc
Confidence 455777888899999987 78999999999999655444566899999999999863
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=254.32 Aligned_cols=284 Identities=16% Similarity=0.159 Sum_probs=183.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC--------CCCCc-cccCCCCCCc--------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHP-------------------- 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~--------~~gg~-~~~~~~~~~~-------------------- 69 (415)
.|||+|||+||||+.+|.++++.| .+|+|||+.. .+||. +..|+.|.+.
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G--~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi 119 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHG--ARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW 119 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTT--CCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence 379999999999999999999999 9999999743 25552 1122111100
Q ss_pred -------chHHH-------H----HHHHHHhhccCeEEEeceEe---ceEEEe--c-----ccccccCEEEEccCCCCCC
Q 014990 70 -------ETKIV-------I----NQFSRVVQHERCSFFGNVTL---GSSVSL--S-----ELRQLYHVVVLAYGAESDR 121 (415)
Q Consensus 70 -------~~~~~-------~----~~~~~~~~~~~~~~~~~~~v---~~~v~~--~-----~~~~~~d~lvlAtG~~~~~ 121 (415)
....+ . ......++..+++++.+... ...+.. . .....+|++|||||+ .|+
T Consensus 120 ~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs-~P~ 198 (542)
T 4b1b_A 120 KFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGC-RPH 198 (542)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCE-EEC
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCC-CCC
Confidence 01111 1 12233455667887766542 112221 1 123478999999999 677
Q ss_pred CCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcC
Q 014990 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (415)
Q Consensus 122 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 201 (415)
.|+.++.+...++++.+++. .. ..+++++|||+|++|+|+|..+.+ .
T Consensus 199 ~P~~~~~~~~~~~ts~~~l~----l~---------~lP~~lvIIGgG~IGlE~A~~~~~--------------------l 245 (542)
T 4b1b_A 199 IPDDVEGAKELSITSDDIFS----LK---------KDPGKTLVVGASYVALECSGFLNS--------------------L 245 (542)
T ss_dssp CCSSSBTHHHHCBCHHHHTT----CS---------SCCCSEEEECCSHHHHHHHHHHHH--------------------H
T ss_pred CCCcccCCCccccCchhhhc----cc---------cCCceEEEECCCHHHHHHHHHHHh--------------------c
Confidence 77654443334455554432 11 147899999999999999999986 4
Q ss_pred CcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce
Q 014990 202 SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (415)
Q Consensus 202 ~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (415)
|. +||++.|+.. + |..+.++. ..+.+.+. +.
T Consensus 246 G~-~VTii~~~~~-L-----------------------------~~~D~ei~-----~~l~~~l~-------------~~ 276 (542)
T 4b1b_A 246 GY-DVTVAVRSIV-L-----------------------------RGFDQQCA-----VKVKLYME-------------EQ 276 (542)
T ss_dssp TC-CEEEEESSCS-S-----------------------------TTSCHHHH-----HHHHHHHH-------------HT
T ss_pred CC-eEEEeccccc-c-----------------------------cccchhHH-----HHHHHHHH-------------hh
Confidence 54 7999987643 2 22122221 11222222 66
Q ss_pred eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcc
Q 014990 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV 361 (415)
Q Consensus 282 ~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~ 361 (415)
||.++++..+.++. . .++.+ .+.+. ++ .++++|.|++|+|.+||. ..+.+ +..++.
T Consensus 277 gi~~~~~~~v~~~~--~-~~~~~-~v~~~----------------~~--~~~~~D~vLvAvGR~Pnt-~~L~l-e~~gv~ 332 (542)
T 4b1b_A 277 GVMFKNGILPKKLT--K-MDDKI-LVEFS----------------DK--TSELYDTVLYAIGRKGDI-DGLNL-ESLNMN 332 (542)
T ss_dssp TCEEEETCCEEEEE--E-ETTEE-EEEET----------------TS--CEEEESEEEECSCEEESC-GGGCG-GGTTCC
T ss_pred cceeecceEEEEEE--e-cCCeE-EEEEc----------------CC--CeEEEEEEEEcccccCCc-cccCc-ccceee
Confidence 89999998888886 3 23322 22221 12 267899999999999976 33323 345677
Q ss_pred ccCCCce-eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 362 PNIRGRV-LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 362 ~~~~G~i-~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++..+.+ .+|+. ++|+.|||||+|||+.+...+...|.+||+.++.+|..
T Consensus 333 ~~~~~~~i~vd~~--~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g 383 (542)
T 4b1b_A 333 VNKSNNKIIADHL--SCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFK 383 (542)
T ss_dssp EETTTTEECCCTT--SBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred ecccCceEecccc--ccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhc
Confidence 7766655 66665 89999999999999866555677899999999999864
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=255.33 Aligned_cols=274 Identities=16% Similarity=0.110 Sum_probs=197.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-CCCCCCcchHHHHHHHHHHhhcc-CeEEEece
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHE-RCSFFGNV 93 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 93 (415)
.+.+++|+|||||+||+++|..|++.| ++|+|||+++.+||.+.+ ...|++....++..++...+.+. +++++.++
T Consensus 388 ~~~~~~VvIIGgG~AGl~aA~~La~~G--~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 465 (690)
T 3k30_A 388 KESDARVLVVGAGPSGLEAARALGVRG--YDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRES 465 (690)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSC
T ss_pred ccccceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 456789999999999999999999999 999999999999987654 23466667777888888888887 89988876
Q ss_pred EeceEEEeccc-ccccCEEEEccCCCC-------CCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEE
Q 014990 94 TLGSSVSLSEL-RQLYHVVVLAYGAES-------DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (415)
Q Consensus 94 ~v~~~v~~~~~-~~~~d~lvlAtG~~~-------~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VV 165 (415)
.+ +.++. ...||+||+|||+.. +..|++||.+...+++..+++.. ....+++|+||
T Consensus 466 ~v----~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~------------~~~~g~~VvVi 529 (690)
T 3k30_A 466 PM----TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAG------------RLPDGKKVVVY 529 (690)
T ss_dssp CC----CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTT------------CCCSSSEEEEE
T ss_pred ee----cHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCC------------CCCCCCEEEEE
Confidence 54 23333 358999999999931 45678899887778877665531 12367899999
Q ss_pred c--CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccC
Q 014990 166 G--QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (415)
Q Consensus 166 G--~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (415)
| +|.+|+|+|..|.+ .+ .+|+++.+.+.+.....
T Consensus 530 G~ggG~~g~e~A~~L~~--------------------~g-~~Vtlv~~~~~l~~~~~----------------------- 565 (690)
T 3k30_A 530 DDDHYYLGGVVAELLAQ--------------------KG-YEVSIVTPGAQVSSWTN----------------------- 565 (690)
T ss_dssp ECSCSSHHHHHHHHHHH--------------------TT-CEEEEEESSSSTTGGGG-----------------------
T ss_pred cCCCCccHHHHHHHHHh--------------------CC-CeeEEEecccccccccc-----------------------
Confidence 9 99999999999986 33 58999998864321000
Q ss_pred CCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcce
Q 014990 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (415)
Q Consensus 244 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~ 323 (415)
.....+.+.+.+. +.||++++++.++++. . ++ +.+...
T Consensus 566 ----------~~~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~--~--~~----~~v~~~----------- 603 (690)
T 3k30_A 566 ----------NTFEVNRIQRRLI-------------ENGVARVTDHAVVAVG--A--GG----VTVRDT----------- 603 (690)
T ss_dssp ----------GGTCHHHHHHHHH-------------HTTCEEEESEEEEEEE--T--TE----EEEEET-----------
T ss_pred ----------cchhHHHHHHHHH-------------HCCCEEEcCcEEEEEE--C--Ce----EEEEEc-----------
Confidence 0111122223332 5689999999998886 3 32 333221
Q ss_pred eccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhh
Q 014990 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYC 403 (415)
Q Consensus 324 ~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~ 403 (415)
.+++++++++|.||+|+|++|+. .+... +...+. +|+.|+||++|||+. +..+. .|+.|
T Consensus 604 --~~~~~~~i~aD~VV~A~G~~p~~----~l~~~----l~~~~~---------~t~~~~VyaiGD~~~-~~~~~-~A~~~ 662 (690)
T 3k30_A 604 --YASIERELECDAVVMVTARLPRE----ELYLD----LVARRD---------AGEIASVRGIGDAWA-PGTIA-AAVWS 662 (690)
T ss_dssp --TTCCEEEEECSEEEEESCEEECC----HHHHH----HHHHHH---------HTSCSEEEECGGGTS-CBCHH-HHHHH
T ss_pred --cCCeEEEEECCEEEECCCCCCCh----HHHHH----Hhhhhc---------ccCCCCEEEEeCCCc-hhhHH-HHHHH
Confidence 14556689999999999999965 22211 111111 468999999999985 44444 69999
Q ss_pred HHHHHhhcccc
Q 014990 404 AEETVSSLSLI 414 (415)
Q Consensus 404 g~~~a~~i~~~ 414 (415)
|+.+|.+|...
T Consensus 663 g~~aa~~i~~~ 673 (690)
T 3k30_A 663 GRRAAEEFDAV 673 (690)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHhh
Confidence 99999999764
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=259.36 Aligned_cols=289 Identities=16% Similarity=0.102 Sum_probs=191.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-CCCCCCcchHHHHHHHHHHhhcc------CeE
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHE------RCS 88 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~ 88 (415)
.++.++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.+ ...|+........+.+...++.. ++.
T Consensus 386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G--~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~ 463 (729)
T 1o94_A 386 TKNKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQL 463 (729)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred ccCCceEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceE
Confidence 456789999999999999999999999 999999999999988765 23355544444444443333322 455
Q ss_pred EEeceEeceEEEeccc-ccccCEEEEccCCCC-------CCCCCCCCCC--CCCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 89 FFGNVTLGSSVSLSEL-RQLYHVVVLAYGAES-------DRALGIPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 89 ~~~~~~v~~~v~~~~~-~~~~d~lvlAtG~~~-------~~~~~i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
+..+.. ++.++. ...||+||+|||+.. |+.|++||.+ .+++++..+++. .. ...
T Consensus 464 i~~~~~----v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~---~~---------~~~ 527 (729)
T 1o94_A 464 ALGQKP----MTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMD---GK---------KKI 527 (729)
T ss_dssp ECSCCC----CCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHH---CC---------SCC
T ss_pred EEeCeE----EehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhc---CC---------CCC
Confidence 544432 334443 357999999999941 5677899987 678888776653 11 226
Q ss_pred CCeEEEEc--CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEE
Q 014990 159 TDTAVILG--QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (415)
Q Consensus 159 ~k~V~VVG--~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 236 (415)
+++|+||| +|.+|+|+|..|.+ .+ .+|+++.|++ +.. ...
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~--------------------~G-~~Vtlv~~~~-l~~---~~~------------- 569 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLAT--------------------AG-HEVTIVSGVH-LAN---YMH------------- 569 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHH--------------------TT-CEEEEEESSC-TTH---HHH-------------
T ss_pred CCeEEEEcCCCCchHHHHHHHHHH--------------------cC-CEEEEEeccc-ccc---ccc-------------
Confidence 89999999 99999999999986 44 4899999886 310 000
Q ss_pred EcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-
Q 014990 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK- 315 (415)
Q Consensus 237 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~- 315 (415)
++. . .+.+.+.+. ++||+++++..+.++. . + .+++......
T Consensus 570 --------~~~--------~-~~~~~~~l~-------------~~GV~i~~~~~v~~i~--~--~----~v~~~~~~~~~ 611 (729)
T 1o94_A 570 --------FTL--------E-YPNMMRRLH-------------ELHVEELGDHFCSRIE--P--G----RMEIYNIWGDG 611 (729)
T ss_dssp --------HTT--------C-HHHHHHHHH-------------HTTCEEECSEEEEEEE--T--T----EEEEEETTCSC
T ss_pred --------ccc--------c-HHHHHHHHH-------------hCCCEEEcCcEEEEEE--C--C----eEEEEEecCCc
Confidence 000 0 111222222 5689999999999986 3 3 2322211000
Q ss_pred ----CCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc
Q 014990 316 ----GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (415)
Q Consensus 316 ----~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~ 391 (415)
.++++.......++..+++||.||+|+|++|+. .+....+ ..+|++ ++|++|+|||+|||+.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~----~l~~~l~--------~~vd~~--~~t~~~~VyAiGD~~~ 677 (729)
T 1o94_A 612 SKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC----TLWNELK--------ARESEW--AENDIKGIYLIGDAEA 677 (729)
T ss_dssp SCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC----HHHHHHH--------HTGGGT--GGGTCCEEEECGGGTS
T ss_pred eEEecccccccccccCCcceeeeCCEEEECCCCCCCh----HHHHHHh--------hhcccc--cccCCCCeEEEeCccc
Confidence 001111111124555679999999999999975 2222111 124554 7899999999999985
Q ss_pred CCccchhhhhhhHHHHHhhcccc
Q 014990 392 GPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 392 ~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
+..+. .|+.||+.||.+|.+.
T Consensus 678 -~~~~~-~A~~~G~~aA~~i~~~ 698 (729)
T 1o94_A 678 -PRLIA-DATFTGHRVAREIEEA 698 (729)
T ss_dssp -CCCHH-HHHHHHHHHHHTTTSS
T ss_pred -hhhHH-HHHHHHHHHHHHhhhh
Confidence 44444 7999999999999764
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=246.23 Aligned_cols=299 Identities=15% Similarity=0.112 Sum_probs=190.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHH---cCCCceEEEEcCCCCCCCccc-cCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTPFGLVR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~---~g~~~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
.++|||||||+||+++|..|++ .+ .+|+|||+.+....... .....+.....++...+.+.++..+++++.+..
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g--~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v 81 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSG--HEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSA 81 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGG--SEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCc--CEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEE
Confidence 5799999999999999999999 66 99999999886422111 011112333445555566777778899886644
Q ss_pred ec-----eEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCC--Ceeechhh------HHHhcCCCCCCCCCCCCCCCC
Q 014990 95 LG-----SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLI--GVHSAREF------VWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 95 v~-----~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~--~v~~~~~~------~~~~~~~~~~~~~~~~~~~~k 160 (415)
.. ..++++++. ..||+||+|||+ .++.|++||.+.. ..++...+ ...+.. ...++
T Consensus 82 ~~id~~~~~V~~~~g~~i~~d~lviAtG~-~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~~~~ 150 (437)
T 3sx6_A 82 EQIDAEAQNITLADGNTVHYDYLMIATGP-KLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQA----------LLREP 150 (437)
T ss_dssp EEEETTTTEEEETTSCEEECSEEEECCCC-EECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHH----------HHHSC
T ss_pred EEEEcCCCEEEECCCCEEECCEEEECCCC-CcCcccCCCCCcccCcceecccccHHHHHHHHHHH----------HHhCC
Confidence 32 235555554 589999999999 7777889997632 22221111 111110 00245
Q ss_pred eEEEEcCChhH------HHHHHHHhcCcccccccCchhHHHHHhhcCCcc---e-EEEEeecCcccCCCCHHHHHHHHcC
Q 014990 161 TAVILGQGNVA------LDVARILLRPTEELATTDIASYAWTALEGSSIR---K-VYLVGRRGPVQAACTAKELREILGI 230 (415)
Q Consensus 161 ~V~VVG~G~sg------~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~-v~l~~r~~~~~~~~~~~~l~~~~~~ 230 (415)
+++|||+|+++ +|+|..+.. .+++.+.+ + |+++.+.+.+.. +.
T Consensus 151 ~~vVVGgG~~~g~~G~~~E~a~~la~----------------~l~~~g~~~~~~~Vtlv~~~~~~~~-~~---------- 203 (437)
T 3sx6_A 151 GPIVIGAMAGASCFGPAYEYAMIVAS----------------DLKKRGMRDKIPSFTFITSEPYIGH-LG---------- 203 (437)
T ss_dssp CCEEEEECTTCCCCHHHHHHHHHHHH----------------HHHHTTCGGGCSCEEEEESSSSTTC-TT----------
T ss_pred CEEEEEcCCCCCcCcHHHHHHHHHHH----------------HHHHcCCcccCcEEEEEcCCccccc-cc----------
Confidence 67899987654 998876653 12233432 2 999998864311 00
Q ss_pred CCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEe
Q 014990 231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (415)
Q Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~ 310 (415)
++... ..+..+.+.+. +.||+++++..+.++. . + .+.+.
T Consensus 204 --------------l~~~~------~~~~~~~~~l~-------------~~gI~~~~~~~v~~v~--~--~----~v~~~ 242 (437)
T 3sx6_A 204 --------------IQGVG------DSKGILTKGLK-------------EEGIEAYTNCKVTKVE--D--N----KMYVT 242 (437)
T ss_dssp --------------TTCCT------THHHHHHHHHH-------------HTTCEEECSEEEEEEE--T--T----EEEEE
T ss_pred --------------cCcch------HHHHHHHHHHH-------------HCCCEEEcCCEEEEEE--C--C----eEEEE
Confidence 01000 01122223332 5689999999998886 3 3 34443
Q ss_pred eeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCc-ccCCeeeeecc
Q 014990 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ-VENGLYVCGWL 389 (415)
Q Consensus 311 ~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t-~~p~vfaiGD~ 389 (415)
... .+|. .++++++++|++++++|++++. ++....++ .+++|++.+|++ +++ ++|||||+|||
T Consensus 243 ~~~----~~g~-----~~~~~~i~~D~vv~~~g~~~~~----~~~~~~gl-~~~~G~i~Vd~~--l~t~~~~~Ifa~GD~ 306 (437)
T 3sx6_A 243 QVD----EKGE-----TIKEMVLPVKFGMMIPAFKGVP----AVAGVEGL-CNPGGFVLVDEH--QRSKKYANIFAAGIA 306 (437)
T ss_dssp EEC----TTSC-----EEEEEEEECSEEEEECCEECCH----HHHTSTTT-BCTTSCBCBCTT--SBBSSCTTEEECGGG
T ss_pred ecc----cCCc-----cccceEEEEeEEEEcCCCcCch----hhhccccc-cCCCCcEEeChh--ccCCCCCCEEEEEEE
Confidence 321 0111 1235689999999999999854 23333455 577899999996 666 99999999999
Q ss_pred ccCC-----------ccchhhhhhhHHHHHhhcccc
Q 014990 390 KRGP-----------TGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 390 ~~~~-----------~~~~~~a~~~g~~~a~~i~~~ 414 (415)
+..+ ......|+.||+.+|.||...
T Consensus 307 ~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~ 342 (437)
T 3sx6_A 307 IAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKAD 342 (437)
T ss_dssp BCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 8632 234557999999999999753
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-28 Score=262.38 Aligned_cols=280 Identities=15% Similarity=0.162 Sum_probs=197.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC---CCCCCcchHHHHHHHHHHhhcc-CeEEEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG---VAPDHPETKIVINQFSRVVQHE-RCSFFGNVT 94 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 94 (415)
.++||||||||||++||..|++.+ .+|+|||+++.+||.+.+. ..+. ....+....+.+.+... +++++.++.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G--~~V~lie~~~~~GG~~~~~~k~~i~~-~~~~~~~~~~~~~l~~~~~v~~~~~~~ 204 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSG--ARVMLLDERAEAGGTLLDTAGEQIDG-MDSSAWIEQVTSELAEAEETTHLQRTT 204 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGGGSSCCEETT-EEHHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCCCceeccCCccccCC-CCHHHHHHHHHHHHhhcCCcEEEeCCE
Confidence 578999999999999999999999 9999999999998877631 1121 12334444555555553 788887765
Q ss_pred eceE--------E-------Ee--------cc-cccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCC
Q 014990 95 LGSS--------V-------SL--------SE-LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK 150 (415)
Q Consensus 95 v~~~--------v-------~~--------~~-~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~ 150 (415)
+... + .. .. ....||+||||||+ .|++|++||++.++++++..+...++...
T Consensus 205 V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs-~p~~~~ipG~~~~gv~~~~~~~~~l~~~~--- 280 (965)
T 2gag_A 205 VFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGA-HERPIVFENNDRPGIMLAGAVRSYLNRYG--- 280 (965)
T ss_dssp EEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCE-EECCCCCBTCCSTTEEEHHHHHHHHHTTC---
T ss_pred EEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCC-ccCCCCCCCCCCCCEEEhHHHHHHHHhcC---
Confidence 4210 0 00 11 13479999999999 68888999999899998766544443221
Q ss_pred CCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcC
Q 014990 151 NLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI 230 (415)
Q Consensus 151 ~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~ 230 (415)
..++++|+|||+|++|+|+|..|.+ .+. +|+++.+++.+.
T Consensus 281 -----~~~gk~vvViGgG~~g~E~A~~L~~--------------------~G~-~Vtvv~~~~~~~-------------- 320 (965)
T 2gag_A 281 -----VRAGARIAVATTNDSAYELVRELAA--------------------TGG-VVAVIDARSSIS-------------- 320 (965)
T ss_dssp -----EESCSSEEEEESSTTHHHHHHHHGG--------------------GTC-CSEEEESCSSCC--------------
T ss_pred -----CCCCCeEEEEcCCHHHHHHHHHHHH--------------------cCC-cEEEEECCCccc--------------
Confidence 1257999999999999999999986 455 499999886431
Q ss_pred CCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCC-CCCeeeEEE
Q 014990 231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER-SGHVSGVHF 309 (415)
Q Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~-~~~v~~v~~ 309 (415)
+ . .+.+. +.||+++++..+.++. . + ++.+.++++
T Consensus 321 ---------------~---------~-----~~~l~-------------~~GV~v~~~~~v~~i~--~-~~~~~v~~v~~ 355 (965)
T 2gag_A 321 ---------------A---------A-----AAQAV-------------ADGVQVISGSVVVDTE--A-DENGELSAIVV 355 (965)
T ss_dssp ---------------H---------H-----HHHHH-------------HTTCCEEETEEEEEEE--E-CTTSCEEEEEE
T ss_pred ---------------h---------h-----HHHHH-------------hCCeEEEeCCEeEEEe--c-cCCCCEEEEEE
Confidence 0 0 11121 5689999999999987 3 2 566767776
Q ss_pred eeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCC-----cccCCee
Q 014990 310 EKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS-----QVENGLY 384 (415)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~-----t~~p~vf 384 (415)
.+.. ..+ ..|+.++++||.|++++|++|+. .+.. ...|.+.+|+. ++ |+.||||
T Consensus 356 ~~~~----~~~-----~~G~~~~i~~D~Vv~a~G~~P~~----~l~~------~~~g~i~vd~~--~~~~v~~ts~p~Iy 414 (965)
T 2gag_A 356 AELD----EAR-----ELGGTQRFEADVLAVAGGFNPVV----HLHS------QRQGKLDWDTT--IHAFVPADAVANQH 414 (965)
T ss_dssp EEEC----TTC-----CEEEEEEEECSEEEEECCEEECC----HHHH------HTTCCEEEETT--TTEEEECSCCTTEE
T ss_pred Eecc----ccC-----CCCceEEEEcCEEEECCCcCcCh----HHHH------hCCCcEEEcCc--ccccccCCCCCCEE
Confidence 5410 000 01334689999999999999965 2221 22467778775 33 8999999
Q ss_pred eeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 385 VCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 385 aiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+|||+.. .++. .|+.||+.||.+|..
T Consensus 415 AaGD~a~~-~~l~-~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 415 LAGAMTGR-LDTA-SALSTGAATGAAAAT 441 (965)
T ss_dssp ECGGGGTC-CSHH-HHHHHHHHHHHHHHH
T ss_pred EEEecCCc-hhHH-HHHHHHHHHHHHHHH
Confidence 99999854 3444 799999999999864
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-28 Score=240.45 Aligned_cols=293 Identities=14% Similarity=0.056 Sum_probs=176.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
.|+|||||||+||+++|.+|++.+++.+|+|||+++..+.... +.+..+.....++...+..+. ..+++++.+..+..
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~-~~gv~~i~~~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLR-AHGIQVVHDSALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHH-HTTCEEECSCEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHH-HCCCEEEEeEEEEE
Confidence 5789999999999999999999987889999999876432211 001011112222222223333 35899988766532
Q ss_pred -----EEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCC----Cee--echhh----HHHhcCCCCCCCCCCCCCCCCe
Q 014990 98 -----SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLI----GVH--SAREF----VWWYNGHPDGKNLSPDLKSTDT 161 (415)
Q Consensus 98 -----~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~----~v~--~~~~~----~~~~~~~~~~~~~~~~~~~~k~ 161 (415)
.+...++ +..||+||+|||+ .+..+++||.+.. .++ ...+. ...+.. + ....
T Consensus 81 d~~~~~v~~~~g~~i~yd~LviAtG~-~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~----------~-~~~~ 148 (401)
T 3vrd_B 81 DPDKKLVKTAGGAEFAYDRCVVAPGI-DLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLES----------M-DDGG 148 (401)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCE-EECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH----------S-CTTC
T ss_pred EccCcEEEecccceeecceeeeccCC-ccccCCccCchhhcccCccceeccHHHHHHHHHHHHh----------c-ccCC
Confidence 3455554 3589999999999 6777788886521 111 11111 111111 1 2333
Q ss_pred EEEEcCCh-------hHHHHHHHHhcCcccccccCchhHHHHHhhcCC-cceEEEEeecCcccCCCCHHHHHHHHcCCCe
Q 014990 162 AVILGQGN-------VALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGPVQAACTAKELREILGIKNL 233 (415)
Q Consensus 162 V~VVG~G~-------sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~ 233 (415)
.+|+++|. .+.|++.++.. .++..+ ..+|+++.+.+.+. ....+
T Consensus 149 ~~v~~~~~~~i~~~~a~~e~~~~~a~----------------~~~~~~~~~~v~i~~~~~~~~---~~~~~--------- 200 (401)
T 3vrd_B 149 VVIIAPPAPPFRCPPGPYERASQIAH----------------YLKAHKSKSKVIILDNSQTFS---KQAQF--------- 200 (401)
T ss_dssp EEEEECCSSSCBCTTHHHHHHHHHHH----------------HHHHHCTTCEEEEECSSSSCT---THHHH---------
T ss_pred cEEEecCCccEEeehHHHHHHHHHHH----------------HHHhcCCCCEEEEEccccccc---ccccc---------
Confidence 44444333 34444444431 111122 24788887765321 00000
Q ss_pred eEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeee
Q 014990 234 YVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTA 313 (415)
Q Consensus 234 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~ 313 (415)
.+.+.... ...+...+|+++++..+..+. . ++....+++
T Consensus 201 ----------------------------~~~~~~~~-----~~~l~~~gi~v~~~~~v~~v~--~--~~~~~~v~~---- 239 (401)
T 3vrd_B 201 ----------------------------TKGWERLY-----GFGTENALIEWHPGPDAAVVK--T--DTEAMTVET---- 239 (401)
T ss_dssp ----------------------------HHHHHHHS-----CTTSTTCSEEEECTTTTCEEE--E--ETTTTEEEE----
T ss_pred ----------------------------cHHHHHHH-----HHHHHhcCcEEEeCceEEEEE--e--cccceEEEc----
Confidence 01111110 223347889999988877775 2 222222322
Q ss_pred ecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccC-
Q 014990 314 LKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG- 392 (415)
Q Consensus 314 ~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~- 392 (415)
.+++++++|+++|++|.+|+. +....++ .+++|++.||+++.+++++|||||+|||+.+
T Consensus 240 --------------~~g~~i~~D~vi~~~g~~~~~-----~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~ 299 (401)
T 3vrd_B 240 --------------SFGETFKAAVINLIPPQRAGK-----IAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAA 299 (401)
T ss_dssp --------------TTSCEEECSEEEECCCEEECH-----HHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCT
T ss_pred --------------CCCcEEEeeEEEEecCcCCch-----hHhhccc-cccCCCEEECCCcceecCCCCEEEecccccCC
Confidence 223479999999999999864 4445565 4778999999875356899999999999753
Q ss_pred C-ccchhhhhhhHHHHHhhccc
Q 014990 393 P-TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 393 ~-~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ +.....|+.||+.+|+||..
T Consensus 300 ~~pk~a~~A~~qa~v~A~ni~~ 321 (401)
T 3vrd_B 300 PMPKSAYSANSQAKVAAAAVVA 321 (401)
T ss_dssp TSCBSHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHH
Confidence 2 34556799999999999974
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=229.46 Aligned_cols=267 Identities=17% Similarity=0.142 Sum_probs=177.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc--eEEEEcCCCCCCCccccCCCC-----------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLPTPFGLVRSGVAP----------------------------- 66 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~--~v~lie~~~~~gg~~~~~~~~----------------------------- 66 (415)
..++|+|||||+||+++|..|++.+ . +|+|||+.+.+||.+.+...+
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G--~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcC--CCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 4689999999999999999999999 7 999999998888766543100
Q ss_pred ---------------------------CCcchHHHHHHHHHHhhccCeEEEeceEece--------EEEecc---c----
Q 014990 67 ---------------------------DHPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSE---L---- 104 (415)
Q Consensus 67 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~---~---- 104 (415)
.+....++.+++.+.++..+..++.++.|.. .++..+ +
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 0111235556667776665556666665521 344433 2
Q ss_pred ccccCEEEEccCCC-CCCCCCCCCCCC-----C-CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHH
Q 014990 105 RQLYHVVVLAYGAE-SDRALGIPGEDL-----I-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177 (415)
Q Consensus 105 ~~~~d~lvlAtG~~-~~~~~~i~g~~~-----~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~ 177 (415)
...||+||+|||+. .|+.|++||.+. + .+.++.++.... ...+++|+|||+|++|+|+|.+
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~------------~~~~k~VvVvG~G~sg~e~A~~ 230 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPE------------LFVGESVLVVGGASSANDLVRH 230 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGG------------GGTTCCEEEECSSHHHHHHHHH
T ss_pred EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChh------------hcCCCEEEEEccCcCHHHHHHH
Confidence 35799999999983 477888888651 2 356655443211 1158999999999999999999
Q ss_pred HhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHH
Q 014990 178 LLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRI 257 (415)
Q Consensus 178 L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 257 (415)
|.+ .+.+.|+++.|++.+ +
T Consensus 231 l~~--------------------~~~~~V~l~~r~~~~------------------------------------l----- 249 (447)
T 2gv8_A 231 LTP--------------------VAKHPIYQSLLGGGD------------------------------------I----- 249 (447)
T ss_dssp HTT--------------------TSCSSEEEECTTCCS------------------------------------C-----
T ss_pred HHH--------------------HhCCcEEEEeCCCCc------------------------------------C-----
Confidence 996 343339999987532 0
Q ss_pred HHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCe
Q 014990 258 QRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGM 337 (415)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~ 337 (415)
...+|.. ...+.++. . ++. .|++. +|+ .++++|.
T Consensus 250 ---------------------~~~~i~~--~~~v~~~~--~--~~~--~v~~~----------------dG~-~~~~~D~ 283 (447)
T 2gv8_A 250 ---------------------QNESLQQ--VPEITKFD--P--TTR--EIYLK----------------GGK-VLSNIDR 283 (447)
T ss_dssp ---------------------BCSSEEE--ECCEEEEE--T--TTT--EEEET----------------TTE-EECCCSE
T ss_pred ---------------------CCCCeEE--ecCeEEEe--c--CCC--EEEEC----------------CCC-EeccCCE
Confidence 0334543 34555664 2 221 34442 333 2479999
Q ss_pred eEEeeccCCccCCCCcc-----cCCC--CccccCCCceeeccCC-CCCcccCCeeeeeccccCCccchhhhhhhHHHHHh
Q 014990 338 VLKSIGYKSVPVNGLPF-----DNHK--GIVPNIRGRVLKNISG-DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVS 409 (415)
Q Consensus 338 vi~atG~~p~~~~~~~~-----~~~~--g~~~~~~G~i~v~~~~-~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~ 409 (415)
||+|||++|+. +| .... ++.. ++...++.+. .+.++.|+||++||+.... ....|..||+++|.
T Consensus 284 vi~atG~~~~~----~~l~~~~l~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~--~~~~a~~qa~~~a~ 355 (447)
T 2gv8_A 284 VIYCTGYLYSV----PFPSLAKLKSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLALHVV--PFPTSQAQAAFLAR 355 (447)
T ss_dssp EEECCCBCCCC----CCHHHHSCCSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCBSSC--HHHHHHHHHHHHHH
T ss_pred EEECCCCCcCC----CCCcccccccccCceec--CCCcccccccccccCCCCcEEEEecccccc--CchHHHHHHHHHHH
Confidence 99999999964 34 3332 3333 3444443321 0237899999999997543 45578999999999
Q ss_pred hccc
Q 014990 410 SLSL 413 (415)
Q Consensus 410 ~i~~ 413 (415)
+|..
T Consensus 356 ~~~g 359 (447)
T 2gv8_A 356 VWSG 359 (447)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 8864
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=243.79 Aligned_cols=282 Identities=17% Similarity=0.175 Sum_probs=186.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-CCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
.+..++|+|||||+||+++|..|++.+ ++|+|||+++.+||.+.+ ...|......+....+...++..+++++.++.
T Consensus 370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 447 (671)
T 1ps9_A 370 AVQKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT 447 (671)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcE
Confidence 345789999999999999999999998 999999999988887653 23465555566667777778888999988876
Q ss_pred eceEEEeccccc-ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHH
Q 014990 95 LGSSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 95 v~~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e 173 (415)
+.. ... .||+||||||+ .|+.|++||.+.+++++..+++. .. ...+++|+|||+|.+|+|
T Consensus 448 v~~------~~~~~~d~lviAtG~-~p~~~~i~G~~~~~v~~~~~~l~---~~---------~~~~~~VvVIGgG~~g~E 508 (671)
T 1ps9_A 448 VTA------DQLQAFDETILASGI-VPRTPPIDGIDHPKVLSYLDVLR---DK---------APVGNKVAIIGCGGIGFD 508 (671)
T ss_dssp CCS------SSSCCSSEEEECCCE-EECCCCCBTTTSTTEEEHHHHHT---SC---------CCCCSEEEEECCHHHHHH
T ss_pred ecH------HHhhcCCEEEEccCC-CcCCCCCCCCCCCcEeeHHHHhh---CC---------CCCCCeEEEECCChhHHH
Confidence 531 123 89999999999 78888999988777887655442 11 226899999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhh------------------cCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeE
Q 014990 174 VARILLRPTEELATTDIASYAWTALE------------------GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYV 235 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~ 235 (415)
+|..|.+...+.. ..+..+. ..|. .....+|+++.+.+...
T Consensus 509 ~A~~l~~~G~~vt-v~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l------------------- 567 (671)
T 1ps9_A 509 TAMYLSQPGESTS-QNIAGFC-NEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKP------------------- 567 (671)
T ss_dssp HHHHHTCCSSCGG-GCHHHHH-HHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCT-------------------
T ss_pred HHHHHHhcCCCcc-cchhhhh-hhhcccccccccccccccccccCCCCcEEEEEEecchhh-------------------
Confidence 9999986221100 0000000 0000 00113455555543211
Q ss_pred EEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec
Q 014990 236 HIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK 315 (415)
Q Consensus 236 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~ 315 (415)
.. .+ .+..++...+.+. +.||+++++..+.++. . + ++.+..
T Consensus 568 ----------~~---~l-~~~~~~~~~~~l~-------------~~GV~v~~~~~v~~i~--~--~----~v~~~~---- 608 (671)
T 1ps9_A 568 ----------GQ---GL-GKTTGWIHRTTLL-------------SRGVKMIPGVSYQKID--D--D----GLHVVI---- 608 (671)
T ss_dssp ----------TT---TS-CTTTHHHHHHHHH-------------HTTCEEECSCEEEEEE--T--T----EEEEEE----
T ss_pred ----------cc---cc-ccccHHHHHHHHH-------------hcCCEEEeCcEEEEEe--C--C----eEEEec----
Confidence 00 00 0111122223332 5689999998888885 2 3 233321
Q ss_pred CCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCcc
Q 014990 316 GGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTG 395 (415)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~ 395 (415)
+|+.+++++|.||||+|++|+. .+... + ....++||++|||......
T Consensus 609 -----------~G~~~~i~~D~Vi~a~G~~p~~----~l~~~----l--------------~~~g~~v~aiGD~~~~~~~ 655 (671)
T 1ps9_A 609 -----------NGETQVLAVDNVVICAGQEPNR----ALAQP----L--------------IDSGKTVHLIGGCDVAMEL 655 (671)
T ss_dssp -----------TTEEEEECCSEEEECCCEEECC----TTHHH----H--------------HTTTCCEEECGGGTCCSSC
T ss_pred -----------CCeEEEEeCCEEEECCCccccH----HHHHH----H--------------HhcCCCEEEECCcCccCch
Confidence 4555689999999999999965 22110 0 1123789999999854432
Q ss_pred chhhhhhhHHHHHhhc
Q 014990 396 IIATNLYCAEETVSSL 411 (415)
Q Consensus 396 ~~~~a~~~g~~~a~~i 411 (415)
....|+.||..+|.+|
T Consensus 656 ~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 656 DARRAIAQGTRLALEI 671 (671)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhC
Confidence 3447999999999986
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=233.98 Aligned_cols=282 Identities=13% Similarity=0.113 Sum_probs=181.5
Q ss_pred CeEEEECCCHHHHHHHHHHHH---cCCCceEEEEcCCCCCCCcccc-CCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTPFGLVRS-GVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~---~g~~~~v~lie~~~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
++|+|||||+||+++|..|++ .+ .+|+|||+++.++..... ....+.....++...+.+.+++.+++++.+..+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g--~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~ 79 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSK--ADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVE 79 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGG--SEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEE
Confidence 689999999999999999999 66 999999999864322111 111222233334445566677778998877443
Q ss_pred c-----eEEEecccc-----cccCEEEEccCCCCCCCCCCCCCCCC--Ceeec---hhhHHHhcCCCCCCCCCCCCCCCC
Q 014990 96 G-----SSVSLSELR-----QLYHVVVLAYGAESDRALGIPGEDLI--GVHSA---REFVWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 96 ~-----~~v~~~~~~-----~~~d~lvlAtG~~~~~~~~i~g~~~~--~v~~~---~~~~~~~~~~~~~~~~~~~~~~~k 160 (415)
. ..+++.+.. ..||+||+|||+ .+..|++||.+.. .+.+. ..+...+.. ..+
T Consensus 80 ~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~-~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~------------~~~ 146 (409)
T 3h8l_A 80 KIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGA-HLATELVKGWDKYGYSVCEPEFATKLREKLES------------FQG 146 (409)
T ss_dssp EEETTTTEEEEECTTSCEEEEECSEEEECCCC-EECGGGSBTHHHHCEESSSTTHHHHHHHHHHH------------CCS
T ss_pred EEeCCCCEEEEccCCcccceeeCCEEEECCCC-CcCccCCCChhhcCcCcCCHHHHHHHHHHHHH------------hcC
Confidence 2 134444333 579999999999 7777788886521 11111 111111111 125
Q ss_pred eEEEEcCCh-------------------------hHHHHHHHHhcCcccccccCchhHHHHHhhcCCc---ceEEEEeec
Q 014990 161 TAVILGQGN-------------------------VALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRR 212 (415)
Q Consensus 161 ~V~VVG~G~-------------------------sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~l~~r~ 212 (415)
+++|||+|. .++|+|..+.. .+++.+. .+|+++.+.
T Consensus 147 ~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~----------------~l~~~g~~~~~~v~~~~~~ 210 (409)
T 3h8l_A 147 GNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHG----------------YFKKKGMLDKVHVTVFSPG 210 (409)
T ss_dssp EEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHH----------------HHHTTTCTTTEEEEEECSS
T ss_pred CeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHH----------------HHHHcCCCCCeEEEEEeCC
Confidence 677999992 47888876653 2223342 478998887
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+ ....+. +.....+.+.+. +.||+++++..+.
T Consensus 211 ~-~l~~~~----------------------------------~~~~~~~~~~l~-------------~~gV~~~~~~~v~ 242 (409)
T 3h8l_A 211 E-YLSDLS----------------------------------PNSRKAVASIYN-------------QLGIKLVHNFKIK 242 (409)
T ss_dssp S-SSTTBC----------------------------------HHHHHHHHHHHH-------------HHTCEEECSCCEE
T ss_pred c-cccccC----------------------------------HHHHHHHHHHHH-------------HCCCEEEcCCceE
Confidence 6 211111 111122223332 5589999999888
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCC--CccccCCCceee
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHK--GIVPNIRGRVLK 370 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~--g~~~~~~G~i~v 370 (415)
++. . + .+++. +| +++++|+||+++|++|+. +.... ++ .+++|++.+
T Consensus 243 ~i~--~--~----~v~~~----------------~g--~~~~~D~vi~a~G~~~~~-----~l~~~~~~l-~~~~G~i~v 290 (409)
T 3h8l_A 243 EIR--E--H----EIVDE----------------KG--NTIPADITILLPPYTGNP-----ALKNSTPDL-VDDGGFIPT 290 (409)
T ss_dssp EEC--S--S----EEEET----------------TS--CEEECSEEEEECCEECCH-----HHHTSCGGG-SCTTSCBCB
T ss_pred EEC--C--C----eEEEC----------------CC--CEEeeeEEEECCCCCccH-----HHHhccccC-cCCCCCEEe
Confidence 885 2 2 23331 22 379999999999999965 32333 33 466799999
Q ss_pred ccCCCCCc-ccCCeeeeeccccC-CccchhhhhhhHHHHHhhcccc
Q 014990 371 NISGDSSQ-VENGLYVCGWLKRG-PTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 371 ~~~~~~~t-~~p~vfaiGD~~~~-~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|+. +++ ++|||||+|||+.. .......|+.||+.||.+|...
T Consensus 291 d~~--~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~ 334 (409)
T 3h8l_A 291 DLN--MVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANR 334 (409)
T ss_dssp BTT--SBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred Ccc--cccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 986 666 89999999999852 2345557999999999998753
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-28 Score=245.35 Aligned_cols=296 Identities=13% Similarity=0.115 Sum_probs=180.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-------cccCCCCC---------C--------cch
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-------VRSGVAPD---------H--------PET 71 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-------~~~~~~~~---------~--------~~~ 71 (415)
.+..++|||||||+||+++|..|++.+++.+|+|||+++.++.. +..+..+. + ..+
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP 87 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccc
Confidence 34678999999999999999999998555999999998764311 11110000 0 000
Q ss_pred HHHHHHHHHH--hhccCeEEEeceEec------eEEEecccc-cccCEEEEccCCCCCCCCCCCCCC----CCCeeechh
Q 014990 72 KIVINQFSRV--VQHERCSFFGNVTLG------SSVSLSELR-QLYHVVVLAYGAESDRALGIPGED----LIGVHSARE 138 (415)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~~~~~~~v~------~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~----~~~v~~~~~ 138 (415)
.+.......+ ....+++++.++.+. +.+++.++. ..||+||||||+ .|+.|++++.. ..+++....
T Consensus 88 ~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs-~p~~~~~~~~~~~~~~~~v~~~~~ 166 (493)
T 1m6i_A 88 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGG-TPRSLSAIDRAGAEVKSRTTLFRK 166 (493)
T ss_dssp GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCE-EECCCHHHHTSCHHHHHTEEECCS
T ss_pred hHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCC-CCCCCCCcccccccccCceEEEcC
Confidence 0000000001 124578888875442 345555443 589999999999 67766655431 123433221
Q ss_pred hH--HHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCccc
Q 014990 139 FV--WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQ 216 (415)
Q Consensus 139 ~~--~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~ 216 (415)
.. ..+... +..+++|+|||+|.+|+|+|..|.+.. +..+ .+|+++.+.+...
T Consensus 167 ~~d~~~l~~~---------~~~~~~vvViGgG~iG~E~A~~l~~~~----------------~~~g-~~V~~v~~~~~~~ 220 (493)
T 1m6i_A 167 IGDFRSLEKI---------SREVKSITIIGGGFLGSELACALGRKA----------------RALG-TEVIQLFPEKGNM 220 (493)
T ss_dssp HHHHHHHHHH---------HHHCSEEEEECCSHHHHHHHHHHHHHH----------------HHHT-CEEEEECSSSSTT
T ss_pred HHHHHHHHHH---------hhcCCeEEEECCCHHHHHHHHHHHhhh----------------hhcC-CEEEEEecCcccc
Confidence 11 111110 114799999999999999999987410 0012 3788887764321
Q ss_pred CCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccc
Q 014990 217 AACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLE 296 (415)
Q Consensus 217 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~ 296 (415)
... +| +.+...+.+.+. +.||+++++..+.++.
T Consensus 221 ~~~-------------------------l~--------~~~~~~~~~~l~-------------~~GV~v~~~~~V~~i~- 253 (493)
T 1m6i_A 221 GKI-------------------------LP--------EYLSNWTMEKVR-------------REGVKVMPNAIVQSVG- 253 (493)
T ss_dssp TTT-------------------------SC--------HHHHHHHHHHHH-------------TTTCEEECSCCEEEEE-
T ss_pred ccc-------------------------CC--------HHHHHHHHHHHH-------------hcCCEEEeCCEEEEEE-
Confidence 111 11 111112222222 6789999999888886
Q ss_pred cCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccC-CCceeeccCCC
Q 014990 297 SNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI-RGRVLKNISGD 375 (415)
Q Consensus 297 ~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~-~G~i~v~~~~~ 375 (415)
. +++.+ .+++. +| ++++||.||+|+|++|+. .+....|+.+++ +|.+.+|++
T Consensus 254 -~-~~~~~-~v~l~----------------dG--~~i~aD~Vv~a~G~~pn~----~l~~~~gl~~~~~~ggi~Vd~~-- 306 (493)
T 1m6i_A 254 -V-SSGKL-LIKLK----------------DG--RKVETDHIVAAVGLEPNV----ELAKTGGLEIDSDFGGFRVNAE-- 306 (493)
T ss_dssp -E-ETTEE-EEEET----------------TS--CEEEESEEEECCCEEECC----TTHHHHTCCBCTTTCSEECCTT--
T ss_pred -e-cCCeE-EEEEC----------------CC--CEEECCEEEECCCCCccH----HHHHHcCCccccCCCcEEECCC--
Confidence 3 23322 33321 23 379999999999999976 344455666664 588899986
Q ss_pred CCcccCCeeeeeccccCCc------c--chhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPT------G--IIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~------~--~~~~a~~~g~~~a~~i~~ 413 (415)
+++ .|||||+|||+..+. . ....|+.||+.||.+|..
T Consensus 307 l~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g 351 (493)
T 1m6i_A 307 LQA-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351 (493)
T ss_dssp CEE-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred ccc-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcC
Confidence 666 699999999985321 1 123699999999999864
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=230.39 Aligned_cols=331 Identities=14% Similarity=0.096 Sum_probs=185.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCC---ceEEEEcCCCCCCCccccC-----C------------CCC----------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQE---AQVDIIDRLPTPFGLVRSG-----V------------APD---------- 67 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~---~~v~lie~~~~~gg~~~~~-----~------------~~~---------- 67 (415)
..++|||||||+||+++|..|++.++. .+|+|||+.+.+|...... . .|.
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 356899999999999999999999744 7999999998766322100 0 000
Q ss_pred --------------CcchHHHHHHHHHHhhccCeEEEeceEece-------------EEEeccc-----ccccCEEEEcc
Q 014990 68 --------------HPETKIVINQFSRVVQHERCSFFGNVTLGS-------------SVSLSEL-----RQLYHVVVLAY 115 (415)
Q Consensus 68 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~v~~~~~-----~~~~d~lvlAt 115 (415)
+....++..++.+..+.+++.++.++.+.. .+...+. ...||+||+||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAt 188 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSP 188 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECC
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECC
Confidence 111234555666777777777776664411 2333332 35799999999
Q ss_pred CCCCCCCCC-CCCCCCC-CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhH
Q 014990 116 GAESDRALG-IPGEDLI-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193 (415)
Q Consensus 116 G~~~~~~~~-i~g~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~ 193 (415)
|+ .|..|+ +++.... .+++..++........ .....+++|+|||+|.+|+|+|..|.+
T Consensus 189 G~-~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vvVvGgG~sg~e~a~~l~~------------- 248 (463)
T 3s5w_A 189 GG-TPRIPQVFRALKGDGRVFHHSQYLEHMAKQP------CSSGKPMKIAIIGGGQSAAEAFIDLND------------- 248 (463)
T ss_dssp CC-EECCCGGGGGGTTCTTEEEGGGHHHHHCC-------------CEEEEEECCSHHHHHHHHHHHH-------------
T ss_pred CC-CCCCcchhhhcCCCCcEEECHHHHhhHHHhh------hcccCCCeEEEECCCHhHHHHHHHHHh-------------
Confidence 99 666655 3343333 5677777665443211 011258999999999999999999986
Q ss_pred HHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHH------------hhhchHHHHHH
Q 014990 194 AWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE------------EMKNSRIQRRV 261 (415)
Q Consensus 194 ~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~------------~~~~~~~~~~~ 261 (415)
..+..+|+++.|++.+......+-..+... |.. ...+..++.... ......+-..+
T Consensus 249 ------~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~-p~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (463)
T 3s5w_A 249 ------SYPSVQADMILRASALKPADDSPFVNEVFA-PKF-----TDLIYSREHAERERLLREYHNTNYSVVDTDLIERI 316 (463)
T ss_dssp ------HCTTEEEEEECSSSSCCBCCCCHHHHGGGS-HHH-----HHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHH
T ss_pred ------cCCCCeEEEEEeCCCCcCccCCccchhccC-hhH-----HHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHH
Confidence 234579999999875422110000000000 000 000000000000 00000111112
Q ss_pred HHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEe
Q 014990 262 YELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKS 341 (415)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a 341 (415)
++.++..... ...+|.+++++.+.++. . ++....+++.+. .+|+.+++++|.||+|
T Consensus 317 ~~~l~~~~~~-------~~~~v~i~~~~~v~~v~--~--~~~~~~v~~~~~-------------~~g~~~~~~~D~Vv~A 372 (463)
T 3s5w_A 317 YGVFYRQKVS-------GIPRHAFRCMTTVERAT--A--TAQGIELALRDA-------------GSGELSVETYDAVILA 372 (463)
T ss_dssp HHHHHHHHHH-------CCCCSEEETTEEEEEEE--E--ETTEEEEEEEET-------------TTCCEEEEEESEEEEC
T ss_pred HHHHHHHHhc-------CCCCeEEEeCCEEEEEE--e--cCCEEEEEEEEc-------------CCCCeEEEECCEEEEe
Confidence 2222211111 13689999999888886 3 333234554431 1456668999999999
Q ss_pred eccCCccCCCCcccCCCCccccCCCceeeccCCCCCcc-----cCCeeeeecccc--C--CccchhhhhhhHHHHHhhc
Q 014990 342 IGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQV-----ENGLYVCGWLKR--G--PTGIIATNLYCAEETVSSL 411 (415)
Q Consensus 342 tG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~-----~p~vfaiGD~~~--~--~~~~~~~a~~~g~~~a~~i 411 (415)
||++|+... ++........ |.+.+|++ +++. .|+|||+|||.. + ...+...|.+++.+++..+
T Consensus 373 tG~~p~~~~--~~l~~l~~~~---g~i~v~~~--~~~~~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~ 444 (463)
T 3s5w_A 373 TGYERQLHR--QLLEPLAEYL---GDHEIGRD--YRLQTDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLY 444 (463)
T ss_dssp CCEECCC-C--TTTGGGGGGB---C--CCCTT--SBCCBCTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHH
T ss_pred eCCCCCCcc--chhHHHHHHh---CCcccCcc--cccccCCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHH
Confidence 999997322 2322211111 67777775 3322 577999999973 1 2234446778887776543
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=226.87 Aligned_cols=249 Identities=15% Similarity=0.087 Sum_probs=176.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCC--CCCc-chHHHHHHHHHHhhccCeEEEeceEe
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA--PDHP-ETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
.++|+|||||+||+++|.+|++. .+|+|||+++.+||.+.+... .++. ...++...+.+.+ ..++++..+..+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v 183 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSA 183 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEE
Confidence 45899999999999999999987 899999999998887654221 1111 3344545555444 558888777654
Q ss_pred ce--------EEEe-ccc---ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEE
Q 014990 96 GS--------SVSL-SEL---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAV 163 (415)
Q Consensus 96 ~~--------~v~~-~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~ 163 (415)
.. .+.. +.. ...||+||+|||+ .++.|++||.+.+++++..++....+... ..++++++
T Consensus 184 ~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~vv 254 (493)
T 1y56_A 184 LGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGA-IDSTMLFENNDMPGVFRRDFALEVMNVWE--------VAPGRKVA 254 (493)
T ss_dssp CCCEECSSSEEEEEEETTEEEEEEESCEEECCCE-EECCCCCTTTTSTTEEEHHHHHHHHHTSC--------BCSCSEEE
T ss_pred EEEEcCCcEEEEEEecCCeEEEEECCEEEECCCC-CccCCCCCCCCCCCEEEcHHHHHHHHhcc--------cCCCCEEE
Confidence 11 1111 222 3579999999999 78888999999889988766554333211 22679999
Q ss_pred EEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccC
Q 014990 164 ILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLI 243 (415)
Q Consensus 164 VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (415)
|||+|.+|+| ..+.
T Consensus 255 ViGgG~~gle--~~l~---------------------------------------------------------------- 268 (493)
T 1y56_A 255 VTGSKADEVI--QELE---------------------------------------------------------------- 268 (493)
T ss_dssp EESTTHHHHH--HHHH----------------------------------------------------------------
T ss_pred EECCCHHHHH--HHHH----------------------------------------------------------------
Confidence 9999999988 1111
Q ss_pred CCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcce
Q 014990 244 KSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQY 323 (415)
Q Consensus 244 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~ 323 (415)
+.||+++++..+.++. . ++.+..+.+.
T Consensus 269 ------------------------------------~~GV~v~~~~~v~~i~--~--~~~v~~v~~~------------- 295 (493)
T 1y56_A 269 ------------------------------------RWGIDYVHIPNVKRVE--G--NEKVERVIDM------------- 295 (493)
T ss_dssp ------------------------------------HHTCEEEECSSEEEEE--C--SSSCCEEEET-------------
T ss_pred ------------------------------------hCCcEEEeCCeeEEEe--c--CCceEEEEeC-------------
Confidence 3468888888888886 4 4444444421
Q ss_pred eccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcc--ccCCCcee-eccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 324 AVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV--PNIRGRVL-KNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 324 ~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~--~~~~G~i~-v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
+| +++++|.||+|+|++|+. .+....|+. ++++|++. +|++ ++ +.|+|||+|||+..+ . ...|
T Consensus 296 ---~g--~~i~aD~Vv~a~G~~p~~----~l~~~~g~~~~~~~~g~i~~vd~~--~~-s~~~vya~GD~~~~~-~-~~~A 361 (493)
T 1y56_A 296 ---NN--HEYKVDALIFADGRRPDI----NPITQAGGKLRFRRGYYSPVLDEY--HR-IKDGIYVAGSAVSIK-P-HYAN 361 (493)
T ss_dssp ---TC--CEEECSEEEECCCEEECC----HHHHHTTCCEEEETTEEEECCCTT--SE-EETTEEECSTTTCCC-C-HHHH
T ss_pred ---CC--eEEEeCEEEECCCcCcCc----hHHHhcCCCccccCCceeeccccc--cC-cCCCEEEEeccCCcc-C-HHHH
Confidence 22 379999999999999975 233444443 34678877 7776 56 999999999998543 3 4479
Q ss_pred hhhHHHHHhhccc
Q 014990 401 LYCAEETVSSLSL 413 (415)
Q Consensus 401 ~~~g~~~a~~i~~ 413 (415)
+.||+.||.+|..
T Consensus 362 ~~~g~~aa~~i~~ 374 (493)
T 1y56_A 362 YLEGKLVGAYILK 374 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999865
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=228.02 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=118.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHH-HcCCCceEEEEcCCCCCCCccccCCCCC---------------------------Cc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HP 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~-~~g~~~~v~lie~~~~~gg~~~~~~~~~---------------------------~~ 69 (415)
..++|+|||||+||+++|..|+ +.| .+|+|||+.+.+||.+.....|+ +.
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~~G--~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 84 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHELG--LTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYI 84 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC--CCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCC--CCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCC
Confidence 4579999999999999999999 887 89999999988887654322121 11
Q ss_pred chHHHHHHHHHHhhccCe--EEEeceEece----------EEEecccc-cccCEEEEccCC-CCCCCCCCCCCC-CC-Ce
Q 014990 70 ETKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LI-GV 133 (415)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~--~~~~~~~v~~----------~v~~~~~~-~~~d~lvlAtG~-~~~~~~~i~g~~-~~-~v 133 (415)
...++..++...++++++ .+..++.+.. .++++++. ..||+||+|||. ..|+.|++||.+ .. .+
T Consensus 85 ~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (540)
T 3gwf_A 85 TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGET 164 (540)
T ss_dssp EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCE
Confidence 234667777887877776 5666655421 34444444 579999999996 468889999976 22 23
Q ss_pred eechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++...+.. .. ...+|+|+|||+|.+|+|+|..|++ ...+|+++.|++
T Consensus 165 ~~~~~~~~---~~---------~~~~krV~VIG~G~sgve~a~~l~~---------------------~~~~Vtv~~r~~ 211 (540)
T 3gwf_A 165 IHTAAWPE---GK---------SLAGRRVGVIGTGSTGQQVITSLAP---------------------EVEHLTVFVRTP 211 (540)
T ss_dssp EEGGGCCS---SC---------CCTTSEEEEECCSHHHHHHHHHHTT---------------------TCSEEEEEESSC
T ss_pred EEeecCCC---cc---------ccccceEEEECCCchHHHHHHHHHh---------------------hCCEEEEEECCC
Confidence 33332221 11 1268999999999999999999996 357999999997
Q ss_pred cc
Q 014990 214 PV 215 (415)
Q Consensus 214 ~~ 215 (415)
.+
T Consensus 212 ~~ 213 (540)
T 3gwf_A 212 QY 213 (540)
T ss_dssp CC
T ss_pred Cc
Confidence 63
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=214.98 Aligned_cols=171 Identities=18% Similarity=0.196 Sum_probs=116.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCC---------------------------Cc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HP 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~---------------------------~~ 69 (415)
+..++|||||||+||+++|..|++.+ .+|+|||+.+.+||.+.....|+ +.
T Consensus 7 ~~~~dVvIIGaG~aGl~aA~~L~~~g--~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~ 84 (545)
T 3uox_A 7 SPALDAVVIGAGVTGIYQAFLINQAG--MKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFA 84 (545)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSC
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCC
Confidence 35679999999999999999999988 99999999998888764332221 22
Q ss_pred chHHHHHHHHHHhhccCe--EEEeceEece----------EEEeccc-ccccCEEEEccCC-CCCCCCCCCCCC-CCC-e
Q 014990 70 ETKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYGA-ESDRALGIPGED-LIG-V 133 (415)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~--~~~~~~~v~~----------~v~~~~~-~~~~d~lvlAtG~-~~~~~~~i~g~~-~~~-v 133 (415)
...++..++...++.+++ .+..++.+.. .++++++ ...||+||+|||. ..|+.|++||.+ ..+ .
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES 164 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence 345677777777777665 4555554421 3444444 3479999999994 268888999976 222 3
Q ss_pred eechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++...+.......++ .....+|+|+|||+|.+|+|+|..|++ ..++|+++.|++
T Consensus 165 ~h~~~~~~~~~~~~~-----~~~~~~krV~VIG~G~tgve~a~~la~---------------------~~~~Vtv~~r~~ 218 (545)
T 3uox_A 165 FHSSRWPTDAEGAPK-----GVDFTGKRVGVIGTGATGVQIIPIAAE---------------------TAKELYVFQRTP 218 (545)
T ss_dssp EEGGGCCBCTTSCBS-----CCCCBTCEEEEECCSHHHHHHHHHHTT---------------------TBSEEEEEESSC
T ss_pred EEccccccccccccc-----ccccCCCeEEEECCCccHHHHHHHHHh---------------------hCCEEEEEEcCC
Confidence 343322211000000 011268999999999999999999996 357999999997
Q ss_pred cc
Q 014990 214 PV 215 (415)
Q Consensus 214 ~~ 215 (415)
.+
T Consensus 219 ~~ 220 (545)
T 3uox_A 219 NW 220 (545)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=211.83 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=118.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCC---------------------------Ccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPD---------------------------HPE 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~---------------------------~~~ 70 (415)
..++|||||||+||+++|..|++.+ .+|+|||+.+.+||.+.....|+ +..
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~ 97 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQG--LTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYAT 97 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCB
T ss_pred CCCCEEEECchHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCC
Confidence 4679999999999999999999988 99999999988887654221111 123
Q ss_pred hHHHHHHHHHHhhccCe--EEEeceEece----------EEEecccc-cccCEEEEccCC-CCCCCCCCCCCC-CC-Cee
Q 014990 71 TKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED-LI-GVH 134 (415)
Q Consensus 71 ~~~~~~~~~~~~~~~~~--~~~~~~~v~~----------~v~~~~~~-~~~d~lvlAtG~-~~~~~~~i~g~~-~~-~v~ 134 (415)
..++..++...+++.++ .+..++.+.. .+++.++. ..||+||+|||. ..|+.|++||.+ .. .++
T Consensus 98 ~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~ 177 (549)
T 4ap3_A 98 QPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDIV 177 (549)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence 34677788888887776 5666655421 34444444 579999999994 368889999976 32 234
Q ss_pred echhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+...+.. .. .++ .+|+|+|||+|.+|+|+|..|++ ..++|+++.|++.
T Consensus 178 ~~~~~~~---~~-------~~~-~~krV~VIG~G~sgve~a~~l~~---------------------~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 178 HTARWPH---DG-------VDF-TGKRVGVIGTGSSGIQSIPIIAE---------------------QAEQLFVFQRSAN 225 (549)
T ss_dssp EGGGCCT---TC-------CCC-BTCEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEEESSCC
T ss_pred Eeccccc---cc-------ccc-CCCEEEEECCCchHHHHHHHHHh---------------------hCCEEEEEECCCC
Confidence 4332210 00 011 68999999999999999999996 3469999999976
Q ss_pred c
Q 014990 215 V 215 (415)
Q Consensus 215 ~ 215 (415)
+
T Consensus 226 ~ 226 (549)
T 4ap3_A 226 Y 226 (549)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=204.16 Aligned_cols=165 Identities=15% Similarity=0.200 Sum_probs=113.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCC---------------------------CCc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP---------------------------DHP 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~---------------------------~~~ 69 (415)
+..++|+|||||++|+++|..|++.| .+|+|||+.+.+||.+.....| .+.
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~ 91 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA 91 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccC
Confidence 34679999999999999999999998 9999999998887755322111 111
Q ss_pred chHHHHHHHHHHhhccC--eEEEeceEece----------EEEeccc-ccccCEEEEccCC-CCCCCCCCCCCC-CCC-e
Q 014990 70 ETKIVINQFSRVVQHER--CSFFGNVTLGS----------SVSLSEL-RQLYHVVVLAYGA-ESDRALGIPGED-LIG-V 133 (415)
Q Consensus 70 ~~~~~~~~~~~~~~~~~--~~~~~~~~v~~----------~v~~~~~-~~~~d~lvlAtG~-~~~~~~~i~g~~-~~~-v 133 (415)
...++.+++....++++ ..+..++.+.. .++.+++ ...+|+||+|||. ..|+.|++||.+ .++ +
T Consensus 92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~ 171 (542)
T 1w4x_A 92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNL 171 (542)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 23355666666666554 34555554421 2344444 3479999999996 368888999975 333 3
Q ss_pred eechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++...+.. ... ...+|+|+|||+|.+|+|++..|.+ ...+|+++.|++
T Consensus 172 ~hs~~~~~---~~~--------~~~gk~V~VIG~G~sg~e~a~~l~~---------------------~~~~vtv~~r~~ 219 (542)
T 1w4x_A 172 YHTGNWPH---EPV--------DFSGQRVGVIGTGSSGIQVSPQIAK---------------------QAAELFVFQRTP 219 (542)
T ss_dssp EEGGGCCS---SCC--------CCBTCEEEEECCSHHHHHHHHHHHH---------------------HBSEEEEEESSC
T ss_pred EECCCCCC---chh--------ccCCCEEEEECCCccHHHHHHHHhh---------------------cCceEEEEEcCC
Confidence 33322210 000 1268999999999999999999986 346899999986
Q ss_pred cc
Q 014990 214 PV 215 (415)
Q Consensus 214 ~~ 215 (415)
.+
T Consensus 220 ~~ 221 (542)
T 1w4x_A 220 HF 221 (542)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-19 Score=179.82 Aligned_cols=171 Identities=14% Similarity=0.085 Sum_probs=115.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC------------CCceEEEEcCCCCCCC---ccccC------------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFG---LVRSG------------------ 63 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g------------~~~~v~lie~~~~~gg---~~~~~------------------ 63 (415)
..-++|||||+||+||++|..|.+.+ .....+.+|+.+.++. ++..+
T Consensus 37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~ 116 (501)
T 4b63_A 37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPR 116 (501)
T ss_dssp TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCC
Confidence 34579999999999999999998764 1246788899875431 11000
Q ss_pred --------------------CCCCCcchHHHHHHHHHHhhccCeEEEeceEec----------------eEEEeccc---
Q 014990 64 --------------------VAPDHPETKIVINQFSRVVQHERCSFFGNVTLG----------------SSVSLSEL--- 104 (415)
Q Consensus 64 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----------------~~v~~~~~--- 104 (415)
....++...++.+|+++.+++++..+++++.|. ..|+..+.
T Consensus 117 s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g 196 (501)
T 4b63_A 117 SSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETG 196 (501)
T ss_dssp CTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTC
T ss_pred CccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCc
Confidence 001233445788888888888776666666552 12333322
Q ss_pred ---ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcC
Q 014990 105 ---RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRP 181 (415)
Q Consensus 105 ---~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~ 181 (415)
...+++||+|||. .|..|..++. .+.++|+.+|........ .....+|+|+|||+|+||+|++.+|++
T Consensus 197 ~~~~~~ar~vVlatG~-~P~iP~~~~~-~g~v~Hss~y~~~~~~~~------~~~~~gKrV~VVG~G~SA~ei~~~L~~- 267 (501)
T 4b63_A 197 EISARRTRKVVIAIGG-TAKMPSGLPQ-DPRIIHSSKYCTTLPALL------KDKSKPYNIAVLGSGQSAAEIFHDLQK- 267 (501)
T ss_dssp CEEEEEEEEEEECCCC-EECCCTTSCC-CTTEEEGGGHHHHHHHHS------CCTTSCCEEEEECCSHHHHHHHHHHHH-
T ss_pred eEEEEEeCEEEECcCC-CCCCCCCCCC-Ccceeeccccccchhhcc------ccccCCcEEEEECCcHHHHHHHHHHHh-
Confidence 1257899999997 6776665544 356888888776543110 011279999999999999999999985
Q ss_pred cccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.....+|++++|++.
T Consensus 268 ------------------~~~~~~v~~~~R~~~ 282 (501)
T 4b63_A 268 ------------------RYPNSRTTLIMRDSA 282 (501)
T ss_dssp ------------------HSTTCEEEEECSSSS
T ss_pred ------------------cCCCceEEEEeCCCc
Confidence 234578999999854
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=137.51 Aligned_cols=166 Identities=13% Similarity=0.059 Sum_probs=108.9
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|++|+++|..|.+ .+ .+|+++.+++...... .
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~--------------------~g-~~v~lie~~~~~~~~~--------------------~ 41 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLAR--------------------AG-LKVLVLDGGRSKVKGV--------------------S 41 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEECSCCTTTTC--------------------S
T ss_pred eEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEeCCCCcccCc--------------------h
Confidence 69999999999999999996 34 5899999886321100 0
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
.+...|.....+....+...+.+.+. +.|++++++ .+.++. . +++.+ .++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~gv~v~~~-~v~~i~--~-~~~~~-~v~------------ 91 (180)
T 2ywl_A 42 RVPNYPGLLDEPSGEELLRRLEAHAR-------------RYGAEVRPG-VVKGVR--D-MGGVF-EVE------------ 91 (180)
T ss_dssp CCCCSTTCTTCCCHHHHHHHHHHHHH-------------HTTCEEEEC-CCCEEE--E-CSSSE-EEE------------
T ss_pred hhhccCCCcCCCCHHHHHHHHHHHHH-------------HcCCEEEeC-EEEEEE--E-cCCEE-EEE------------
Confidence 00011111011111222233333332 457889888 888876 3 22221 121
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
..++ ++++|.||+|+|..|+. ....++.++ +|.+.+|++ ++|+.|+|||+|||+..+......|
T Consensus 92 ------~~~g-~i~ad~vI~A~G~~~~~------~~~~g~~~~-~g~i~vd~~--~~t~~~~i~a~GD~~~~~~~~~~~A 155 (180)
T 2ywl_A 92 ------TEEG-VEKAERLLLCTHKDPTL------PSLLGLTRR-GAYIDTDEG--GRTSYPRVYAAGVARGKVPGHAIIS 155 (180)
T ss_dssp ------CSSC-EEEEEEEEECCTTCCHH------HHHHTCCEE-TTEECCCTT--CBCSSTTEEECGGGGTCCSCCHHHH
T ss_pred ------ECCC-EEEECEEEECCCCCCCc------cccCCCCcc-CceEEeCCC--CCcCCCCEEEeecccCcchhhHHHH
Confidence 1122 69999999999999842 123355667 899999987 8899999999999987655345579
Q ss_pred hhhHHHHHhhccc
Q 014990 401 LYCAEETVSSLSL 413 (415)
Q Consensus 401 ~~~g~~~a~~i~~ 413 (415)
+.||+.+|.+|..
T Consensus 156 ~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 156 AGDGAYVAVHLVS 168 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 9999999999864
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-19 Score=171.78 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=85.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-CCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-APDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
..+||+||||||||++||.+|++...+++|+|||+.+.+||.+.++- .+...... .....++++.++++..+...
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~---~~~~~~~~e~Gv~~~~~~~~- 139 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMR---KPAHLFLQELEIPYEDEGDY- 139 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEE---TTTHHHHHHTTCCCEECSSE-
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHH---HHHHHHHHHcCCEEEECCcc-
Confidence 46799999999999999999986422399999999999999877542 11111111 12233455567665443221
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~ 176 (415)
....+.++++++. .++.+.++|..........++.. ... ....+++++|||+|.++++.|.
T Consensus 140 --------~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~--~~~--------~~~~~~~v~viggg~~av~~a~ 200 (326)
T 3fpz_A 140 --------VVVKHAALFISTV-LSKVLQLPNVKLFNATCVEDLVT--RPP--------TEKGEVTVAGVVTNWTLVTQAH 200 (326)
T ss_dssp --------EEESCHHHHHHHH-HHHHHTSTTEEEETTEEEEEEEE--ESS--------CSSSSCEEEEEEEEEHHHHTCT
T ss_pred --------eecceeEEEEcch-hhhccccccceeecccccceeec--cCC--------cccCCCEEEEEccCceeeehhh
Confidence 1122234445554 45666777765222222222211 011 1236899999999999999997
Q ss_pred HHhc
Q 014990 177 ILLR 180 (415)
Q Consensus 177 ~L~~ 180 (415)
.+..
T Consensus 201 ~~~~ 204 (326)
T 3fpz_A 201 GTQC 204 (326)
T ss_dssp TSSS
T ss_pred hhhh
Confidence 7764
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-13 Score=134.05 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+|+|||||+||+++|..|++.| .+|+|+|+.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G--~~V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAG--KKVTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--CCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEeCC
Confidence 6999999999999999999999 999999998
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=105.92 Aligned_cols=35 Identities=17% Similarity=0.023 Sum_probs=30.0
Q ss_pred cccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 378 t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|++||||++|||+ ... +...++.||+.+|.+|.+.
T Consensus 196 t~~p~iya~G~~a-~~g-~~~~~~~~g~~~a~~i~~~ 230 (232)
T 2cul_A 196 KRLEGLYAVGLCV-REG-DYARMSEEGKRLAEHLLHE 230 (232)
T ss_dssp TTSBSEEECGGGT-SCC-CHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeeeecc-cCc-cHHHHHHHHHHHHHHHHhh
Confidence 6899999999999 544 6668899999999999753
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-09 Score=90.06 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=68.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCC---CcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPD---HPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
++|+|||||++|+++|..|++.+ .+|+|+|+.+..... ......|. .....++...+.+.+++.+++++.+ .+
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v 78 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAG--LKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VV 78 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CC
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EE
Confidence 58999999999999999999999 999999998632111 00000012 1234577778888888889999887 44
Q ss_pred ce--------EEEecccccccCEEEEccCCC
Q 014990 96 GS--------SVSLSELRQLYHVVVLAYGAE 118 (415)
Q Consensus 96 ~~--------~v~~~~~~~~~d~lvlAtG~~ 118 (415)
.. .++.+++...+|.||+|+|..
T Consensus 79 ~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~ 109 (180)
T 2ywl_A 79 KGVRDMGGVFEVETEEGVEKAERLLLCTHKD 109 (180)
T ss_dssp CEEEECSSSEEEECSSCEEEEEEEEECCTTC
T ss_pred EEEEEcCCEEEEEECCCEEEECEEEECCCCC
Confidence 21 233344445799999999984
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-09 Score=106.06 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=34.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
.++|+|||||+||+++|..|++.| .+|+|||+.+.+|
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G--~~V~vlEk~~~~g 40 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIG 40 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSC
T ss_pred CCCEEEECCcHHHHHHHHHHHhCC--CCEEEEeCCCCCc
Confidence 478999999999999999999999 9999999998764
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-09 Score=104.12 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=68.6
Q ss_pred cccCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-----------cCC--------CCCC----
Q 014990 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-----------SGV--------APDH---- 68 (415)
Q Consensus 12 ~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-----------~~~--------~~~~---- 68 (415)
+..+.+..++|+|||||+||+++|..|++.| .+|+|+|+.+.+|+.+. ... .+.+
T Consensus 20 ~~~M~~~~~dViIIGgG~AGl~aA~~La~~G--~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 3v76_A 20 FQSMVAEKQDVVIIGAGAAGMMCAIEAGKRG--RRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSA 97 (417)
T ss_dssp --------CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHH
T ss_pred cccccCCCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHH
Confidence 3334456789999999999999999999999 99999999987654210 000 0000
Q ss_pred -------------------------------cchHHHHHHHHHHhhccCeEEEeceEece--------EEEecccccccC
Q 014990 69 -------------------------------PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSELRQLYH 109 (415)
Q Consensus 69 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~~~~~~d 109 (415)
....++.+.+.+.+++.+++++.++.+.. .+...++...+|
T Consensus 98 l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad 177 (417)
T 3v76_A 98 LARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAA 177 (417)
T ss_dssp HHHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEEEES
T ss_pred HHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEEEee
Confidence 01124556667777777899988776522 233344455799
Q ss_pred EEEEccCCCC
Q 014990 110 VVVLAYGAES 119 (415)
Q Consensus 110 ~lvlAtG~~~ 119 (415)
+||+|+|...
T Consensus 178 ~VIlAtG~~S 187 (417)
T 3v76_A 178 SLVVASGGKS 187 (417)
T ss_dssp EEEECCCCSS
T ss_pred EEEECCCCcc
Confidence 9999999843
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7e-08 Score=97.83 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=70.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCC----------------CC-------cchH
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP----------------DH-------PETK 72 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~----------------~~-------~~~~ 72 (415)
.+..++|+|||||++|+++|..|++.| .+|+|||+.+.+|+.......| .+ ....
T Consensus 89 ~~~~~dVvIVGgG~aGl~aA~~La~~G--~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 166 (497)
T 2bry_A 89 ACTNTKCLVVGAGPCGLRAAVELALLG--ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR 166 (497)
T ss_dssp TTTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred ccCCCCEEEECccHHHHHHHHHHHHCC--CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence 346789999999999999999999999 9999999998766432111111 00 1124
Q ss_pred HHHHHHHHHhhccCeEEEeceEece-----------EEEe--c-cc---ccccCEEEEccCCC
Q 014990 73 IVINQFSRVVQHERCSFFGNVTLGS-----------SVSL--S-EL---RQLYHVVVLAYGAE 118 (415)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~v~~-----------~v~~--~-~~---~~~~d~lvlAtG~~ 118 (415)
++...+.+.++..+++++.++.+.. .+++ . ++ ...+|+||+|+|..
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~ 229 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK 229 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence 5556677777777899888766521 2333 2 33 34799999999983
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-07 Score=88.04 Aligned_cols=39 Identities=38% Similarity=0.507 Sum_probs=35.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg 58 (415)
..++|+|||||++|+++|..|++. + .+|+|||+.+.+++
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G--~~V~viEk~~~~gg 77 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVSPGG 77 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSSCCT
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC--CeEEEEECCCCCCC
Confidence 457999999999999999999997 7 99999999987764
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-07 Score=84.45 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCC-----------------cchHHHHHHHHH
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----------------PETKIVINQFSR 80 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~-----------------~~~~~~~~~~~~ 80 (415)
..++|+|||||++|+++|..|++.+ .+|+|||+.....|. . ..|.. +....+...+.+
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~~g--~~v~lie~~~~~~G~-~--~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~ 76 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQKG--VRVGLLTQSLDAVMM-P--FLPPKPPFPPGSLLERAYDPKDERVWAFHARAKY 76 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTC-C--SSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCcCCc-c--cCccccccchhhHHhhhccCCCCCHHHHHHHHHH
Confidence 3579999999999999999999999 999999998432221 1 11110 012244556667
Q ss_pred Hhhcc-CeEEEeceEece--------EEEeccc-ccccCEEEEccCCC
Q 014990 81 VVQHE-RCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE 118 (415)
Q Consensus 81 ~~~~~-~~~~~~~~~v~~--------~v~~~~~-~~~~d~lvlAtG~~ 118 (415)
.+++. +++++....... .+...++ ...+|+||+|+|..
T Consensus 77 ~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~ 124 (232)
T 2cul_A 77 LLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 124 (232)
T ss_dssp HHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCC
Confidence 77775 888774322111 1333333 35799999999983
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=92.36 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=67.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc--------------ccCC------------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--------------RSGV------------------ 64 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~--------------~~~~------------------ 64 (415)
+..++|+|||||++|+++|..|++.| .+|+|||+.+.++... ..++
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~~G--~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 86 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQNG--WDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWM 86 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEe
Confidence 34689999999999999999999999 9999999987654210 0000
Q ss_pred ------------CCC-CcchHHHHHHHHHHhhccCeEEEeceEece-----EEEecccc-cccCEEEEccCCC
Q 014990 65 ------------APD-HPETKIVINQFSRVVQHERCSFFGNVTLGS-----SVSLSELR-QLYHVVVLAYGAE 118 (415)
Q Consensus 65 ------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~v~~~~~~-~~~d~lvlAtG~~ 118 (415)
.+. ......+...+.+.+...+++++.++.+.. .++..++. ..+|+||.|+|..
T Consensus 87 ~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~ 159 (379)
T 3alj_A 87 HNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVG 159 (379)
T ss_dssp TTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTT
T ss_pred CCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCcc
Confidence 000 001134555666777777889888876532 34444443 5799999999984
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-08 Score=89.37 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=37.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
.+|+||||||||++||..|++.| ++|+|||+.+.+||.+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~~~GG~~~ 42 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSGGRMS 42 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCccc
Confidence 57999999999999999999999 99999999999988653
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.6e-08 Score=91.71 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=68.2
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeee--eecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCC------
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKT--ALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNG------ 351 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~--~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~------ 351 (415)
..|++++++..+.++. . +++.+.++.+... .+. ..+|. .++..++++|.||.|+|..++....
T Consensus 132 ~~gv~i~~~~~V~~i~--~-~~~~v~gv~~~~~~~~~~-~~~g~-----~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~ 202 (284)
T 1rp0_A 132 RPNVKLFNAVAAEDLI--V-KGNRVGGVVTNWALVAQN-HHTQS-----CMDPNVMEAKIVVSSCGHDGPFGATGVKRLK 202 (284)
T ss_dssp STTEEEEETEEEEEEE--E-ETTEEEEEEEEEHHHHTC-TTTSS-----CCCCEEEEEEEEEECCCSSSTTTTHHHHHHH
T ss_pred cCCCEEEcCcEEEEEE--e-cCCeEEEEEEeccccccc-cCccc-----cCceEEEECCEEEECCCCchHHHHHHHHHhh
Confidence 3589999999998886 4 3555656655321 000 00010 2334589999999999987632100
Q ss_pred -----CcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc---C-C--ccchhhhhhhHHHHHhhccc
Q 014990 352 -----LPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR---G-P--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 352 -----~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~---~-~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
++.....++..+....+.++. ..++.|++|++||+.. + + ...+..++.+|+.+|.+|.+
T Consensus 203 ~~g~~~~v~~~~g~~~~~~~~~~v~~---~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~ 272 (284)
T 1rp0_A 203 SIGMIDHVPGMKALDMNTAEDAIVRL---TREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALK 272 (284)
T ss_dssp HTTSSSCCCCCEEECHHHHHHHHHHH---CEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcCCcCCchhhhhhHHHhhc---cccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHH
Confidence 000001111111000112222 3467899999999862 1 1 11244688999999998865
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-07 Score=91.65 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=34.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++|+|||||+||+++|..|++.| .+|+|+|+.+.+|
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~llEk~~~~g 62 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLG 62 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCC--CCEEEEECCCCCC
Confidence 4579999999999999999999999 9999999987655
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-07 Score=93.57 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|||||+||++||..|++.| .+|+|||+..
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G--~kVlLIEk~~ 61 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMG--QQTLLLTHNI 61 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCG
T ss_pred CcCCEEEECChHHHHHHHHHHHhCC--CCEEEEeecc
Confidence 4689999999999999999999999 9999999874
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.4e-07 Score=88.97 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=34.9
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+..+..++|+|||||++|+++|..|++.| .+|+|||+....
T Consensus 12 ~~~~~~~dvvIIGgG~~Gl~~A~~La~~G--~~V~llE~~~~~ 52 (382)
T 1ryi_A 12 RAMKRHYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTMG 52 (382)
T ss_dssp --CCSEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTT
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCC
Confidence 33446789999999999999999999999 999999997543
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.5e-07 Score=92.29 Aligned_cols=41 Identities=37% Similarity=0.472 Sum_probs=36.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
...++|||||||+||+++|..|++.| .+|+|||+.+.+|+.
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G--~~V~vlEk~~~~gg~ 164 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGGN 164 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCc
Confidence 34689999999999999999999999 999999999876653
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.7e-07 Score=92.43 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G--~kV~VlEr~~~ 141 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMG--FNPIIVERGKE 141 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTT--CCCEEECSSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CeEEEEEccCc
Confidence 479999999999999999999999 99999999854
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.2e-07 Score=88.93 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|||||+||+++|..|++.| .+|+|+|+.+
T Consensus 4 ~~~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~ 38 (421)
T 3nix_A 4 EKVDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQK 38 (421)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 3479999999999999999999999 9999999985
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-06 Score=81.79 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=35.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|+|||||+||+++|..|++..++.+|+|||+.+.+|+
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GG 118 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCC
Confidence 46899999999999999999999822299999999987664
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.4e-07 Score=84.74 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=34.8
Q ss_pred CeEEEECCCHHHHHHHHHHHH---cCCCceEEEEcCCCCCCCc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~---~g~~~~v~lie~~~~~gg~ 59 (415)
++|+|||||++|+++|..|++ .| .+|+|||+.+.+||.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~~~gg~ 42 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKADDSGGR 42 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSSSSCGG
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCCCCccc
Confidence 589999999999999999999 77 999999999877764
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=86.10 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++++++|+|||||++|+++|..|++.| .+|+|||+.+.+
T Consensus 20 ~~~~~dV~IVGaG~aGl~~A~~La~~G--~~V~v~E~~~~~ 58 (407)
T 3rp8_A 20 FQGHMKAIVIGAGIGGLSAAVALKQSG--IDCDVYEAVKEI 58 (407)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSCC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCC
Confidence 346789999999999999999999999 999999998653
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=87.97 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||++|+++|..|++.| .+|+|||+.+.
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G--~~v~viEr~~~ 39 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQG--VRVLVVERRPG 39 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 4679999999999999999999999 99999999854
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-06 Score=84.33 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||++|+++|..|++.| .+|+|||+.+.
T Consensus 3 ~~~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~~ 38 (369)
T 3dme_A 3 TDIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEG 38 (369)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence 3579999999999999999999999 99999999864
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=85.24 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|+|||||++|+++|..|++.| .+|+|||+.+.+
T Consensus 5 ~~~dVvIVGaG~aGl~~A~~L~~~G--~~V~viE~~~~~ 41 (399)
T 2x3n_A 5 NHIDVLINGCGIGGAMLAYLLGRQG--HRVVVVEQARRE 41 (399)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCC
Confidence 3579999999999999999999999 999999998643
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-06 Score=88.51 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-------------------cc------------c-cC-C
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-------------------LV------------R-SG-V 64 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-------------------~~------------~-~~-~ 64 (415)
..++|+|||||++|+++|..|++.| ++|+|||+.+.+.. .+ . ++ .
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G--~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 125 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGG--VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI 125 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTT--CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence 3579999999999999999999999 99999999754220 00 0 00 0
Q ss_pred -------------CCC--CcchHHHHHHHHHHhhccCeEEEeceEece--------EEEe--ccc--ccccCEEEEccCC
Q 014990 65 -------------APD--HPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSL--SEL--RQLYHVVVLAYGA 117 (415)
Q Consensus 65 -------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~--~~~--~~~~d~lvlAtG~ 117 (415)
.+. ......+...+.+.++..+++++.++.+.. .++. .++ ...+|+||.|.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 000 012234455666666667888887776521 2333 334 3589999999998
Q ss_pred CC
Q 014990 118 ES 119 (415)
Q Consensus 118 ~~ 119 (415)
..
T Consensus 206 ~S 207 (570)
T 3fmw_A 206 RS 207 (570)
T ss_dssp SC
T ss_pred Cc
Confidence 43
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=83.32 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|||||++|+++|..|++.| .+|+|||+..
T Consensus 4 ~~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~~ 38 (382)
T 1y56_B 4 EKSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKRF 38 (382)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 4679999999999999999999999 9999999984
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-06 Score=89.51 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++|+|||||.+|+++|..|+++| .+|+|||+.+.++
T Consensus 271 ~~~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~g 308 (676)
T 3ps9_A 271 SKREAAIIGGGIASALLSLALLRRG--WQVTLYCADEAPA 308 (676)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCccc
Confidence 4589999999999999999999999 9999999975443
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-06 Score=88.70 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=33.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+|||||+||+++|..|++.| .+|+|||+.+.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~G--~~V~LiEr~~~ 57 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKLG--HDVTIYERSAF 57 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcCC--CCEEEEcCCCC
Confidence 34679999999999999999999999 99999999843
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9.9e-07 Score=85.43 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++|+|||||.+|+++|.+|+ +| .+|+|+|+.+.++
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G--~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AH--GRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TT--SCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CC--CCEEEEECCCCcc
Confidence 5789999999999999999999 58 9999999986544
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=88.24 Aligned_cols=40 Identities=40% Similarity=0.539 Sum_probs=36.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...++|||||||+||+++|..|++.| .+|+|||+.+.+++
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G--~~V~vlEk~~~~gg 158 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGG 158 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 35679999999999999999999999 99999999987664
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=83.93 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+|||||++|+++|..|++.| .+|+|||+.+..
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G--~~V~vle~~~~~ 37 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAG--LNVLMTDAHMPP 37 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTT--CCEEEECSSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence 368999999999999999999999 999999998643
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=85.41 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=64.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC---CCcc---------------c-cC-CC--------------
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLV---------------R-SG-VA-------------- 65 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~---gg~~---------------~-~~-~~-------------- 65 (415)
++|+|||||+||+++|..|++..|+.+|+|+|+.+.+ |... . .. +.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 5899999999999999999999222999999998654 2110 0 00 00
Q ss_pred ------C-CC----cchHHHHHHHHHHhhccCeEEEeceEeceEEEecccccccCEEEEccCCC
Q 014990 66 ------P-DH----PETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAE 118 (415)
Q Consensus 66 ------~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~~d~lvlAtG~~ 118 (415)
. +. ....++...+.+.++..+++++.++.+..... .....+|.||.|+|..
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~~~~ad~vV~AdG~~ 142 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--LPLADYDLVVLANGVN 142 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--CCGGGCSEEEECCGGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--cccccCCEEEECCCCC
Confidence 0 00 11235556667777777888888877632110 1124799999999984
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=7.1e-07 Score=92.82 Aligned_cols=41 Identities=32% Similarity=0.350 Sum_probs=36.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..++|+|||||+||+++|..|++.| .+|+|||+.+..++..
T Consensus 45 ~~~dvvIIG~G~aGl~aA~~l~~~G--~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 45 IKYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEIDSGLK 85 (623)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCSSSS
T ss_pred ccCCEEEECCcHHHHHHHHHHHhCC--CcEEEEeccCCCCCcc
Confidence 3579999999999999999999999 9999999999887644
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=2.6e-06 Score=83.51 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=33.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+|||||++|+++|..|++.| .+|+|||+.+.
T Consensus 3 ~~~~~V~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 39 (397)
T 2vou_A 3 PTTDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSPQ 39 (397)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 35689999999999999999999999 99999999865
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-06 Score=85.37 Aligned_cols=104 Identities=19% Similarity=0.182 Sum_probs=67.1
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc--------------ccCC---------------
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--------------RSGV--------------- 64 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~--------------~~~~--------------- 64 (415)
...+..++|+||||||+|+++|..|++.| .+|+|||+.+.++... ..++
T Consensus 6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (500)
T 2qa1_A 6 HHHRSDAAVIVVGAGPAGMMLAGELRLAG--VEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHF 83 (500)
T ss_dssp --CCSBCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEE
T ss_pred CCccCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccc
Confidence 34557889999999999999999999999 9999999985432100 0000
Q ss_pred ---------CC-CCc-----chHHHHHHHHHHhhccCeEEEeceEece--------EEEeccc----ccccCEEEEccCC
Q 014990 65 ---------AP-DHP-----ETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL----RQLYHVVVLAYGA 117 (415)
Q Consensus 65 ---------~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~~----~~~~d~lvlAtG~ 117 (415)
.+ .++ ....+...+.+.+...+++++.++.+.. .++..+. ...+|+||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~ 163 (500)
T 2qa1_A 84 GGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGG 163 (500)
T ss_dssp TTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCT
T ss_pred cceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCc
Confidence 00 000 1123444566666667888888876522 2333332 3578999999998
Q ss_pred CC
Q 014990 118 ES 119 (415)
Q Consensus 118 ~~ 119 (415)
..
T Consensus 164 ~S 165 (500)
T 2qa1_A 164 RS 165 (500)
T ss_dssp TC
T ss_pred ch
Confidence 54
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.3e-07 Score=87.59 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=34.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+++||+||||||||+++|..|++.| ++|+|||+.+.++
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~~~~ 40 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEIG 40 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCC
Confidence 3589999999999999999999999 9999999987654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.9e-06 Score=87.03 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=34.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++|||||||.+|+++|..|+++| .+|+|||+.+.++
T Consensus 263 ~~~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~g 300 (689)
T 3pvc_A 263 RCDDIAIIGGGIVSALTALALQRRG--AVVTLYCADAQPA 300 (689)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSSTT
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCC--CcEEEEeCCCccc
Confidence 4589999999999999999999999 9999999975443
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-06 Score=86.68 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|||||+||+++|..|++.| .+|+|||+.+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G--~~V~liE~~~ 40 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRG--HRVLLLEREA 40 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCC--CCEEEEccCC
Confidence 4579999999999999999999999 9999999986
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-06 Score=82.83 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||++|+++|..|++.| .+|+|||+.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 68999999999999999999999 99999999763
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.6e-06 Score=81.71 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+|||||++|+++|..|++.| .+|+|||+.+.
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 60 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNG--IDVSVYERDND 60 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTT--CEEEEEECSSS
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 35679999999999999999999999 99999999864
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.6e-06 Score=83.28 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=66.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc--------------ccCC-----------------
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV--------------RSGV----------------- 64 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~--------------~~~~----------------- 64 (415)
.+..++|+||||||+|+++|..|++.| .+|+|||+.+.+.... ..++
T Consensus 9 ~~~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 86 (499)
T 2qa2_A 9 HRSDASVIVVGAGPAGLMLAGELRLGG--VDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGG 86 (499)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETT
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecc
Confidence 446789999999999999999999999 9999999975432100 0000
Q ss_pred -------CC-CCc-----chHHHHHHHHHHhhccCeEEEeceEece--------EEEeccc----ccccCEEEEccCCCC
Q 014990 65 -------AP-DHP-----ETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL----RQLYHVVVLAYGAES 119 (415)
Q Consensus 65 -------~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~~----~~~~d~lvlAtG~~~ 119 (415)
.+ .++ ....+...+.+.+.+.+++++.++.+.. .++..+. ...+|+||.|.|...
T Consensus 87 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 87 RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred eecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 00 010 1224445566666677888888876522 2333332 357899999999854
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=6.6e-06 Score=78.19 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=35.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
.++|+|||||++|+++|..|++.+++.+|+|+|+.+.+|+.
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg 105 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 105 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc
Confidence 34899999999999999999999333999999999887743
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.2e-06 Score=86.22 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|||||+||++||..|++.| .+|+|||+..
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G--~kVlLIEk~~ 60 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMG--AKTAMFVLNA 60 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCG
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CCEEEEEecc
Confidence 4689999999999999999999999 9999999974
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-06 Score=83.07 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc--CCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~--g~~~~v~lie~~~~ 55 (415)
.++|+|||||++|+++|..|++. | .+|+|||+...
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG--~~V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPG--RSLLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTT--SCEEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCC--CeEEEEeCCCC
Confidence 47999999999999999999999 7 99999999754
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.8e-06 Score=81.08 Aligned_cols=93 Identities=25% Similarity=0.271 Sum_probs=69.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+++|+.+.+... ....++...+.+.+++.+++++.++.+..
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~---------~~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 216 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPLGV---------YLDKEFTDVLTEEMEANNITIATGETVER 216 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTTTT---------TCCHHHHHHHHHHHHTTTEEEEESCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCcccccc---------cCCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence 5789999999999999999999999 999999988754221 11245666777888888999988765421
Q ss_pred --------EEEecccccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
.+..+.....+|.||+|+|. .|..
T Consensus 217 i~~~~~v~~v~~~~~~i~~d~vi~a~G~-~p~~ 248 (447)
T 1nhp_A 217 YEGDGRVQKVVTDKNAYDADLVVVAVGV-RPNT 248 (447)
T ss_dssp EECSSBCCEEEESSCEEECSEEEECSCE-EESC
T ss_pred EEccCcEEEEEECCCEEECCEEEECcCC-CCCh
Confidence 12333334579999999998 4443
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=7.1e-06 Score=84.71 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=34.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKA------HQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~------g~~~~v~lie~~~~~gg 58 (415)
.++|+|||||+||+++|..|++. | .+|+|||+.+.+++
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G--~~V~vlEk~~~~g~ 78 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAHIGA 78 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSSTTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCC--CcEEEEeCCCCCCC
Confidence 46899999999999999999998 7 99999999876543
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-06 Score=89.06 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+|+|||||||.+||+||.+|++.| ++|+|+|+++.+||...
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-------C
T ss_pred CCCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCCCCCCcEE
Confidence 478999999999999999999999 99999999999998643
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=88.35 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=38.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|||||||++||+||.+|++. | .+|+|+|+++.+||...
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~k~~G--~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLNQIDG--PSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHCC--SCEEEEESSSSCCGGGC
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCC--CCEEEEECCCCCcCCee
Confidence 467999999999999999999985 7 99999999999999753
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=78.72 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHH-cCCCceEEEEcCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPT 55 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~v~lie~~~~ 55 (415)
.+..++|+|||||++|+++|..|++ .| ..+|+|||+.+.
T Consensus 18 ~~~~~dVvIIG~G~~Gl~~A~~La~~~G-~~~V~vlE~~~~ 57 (405)
T 2gag_B 18 PKKSYDAIIVGGGGHGLATAYFLAKNHG-ITNVAVLEKGWL 57 (405)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHHHC-CCCEEEECSSST
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHhcC-CCcEEEEeCCCC
Confidence 3456899999999999999999999 75 269999999874
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=9.4e-06 Score=83.58 Aligned_cols=40 Identities=33% Similarity=0.479 Sum_probs=36.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
..++|+|||+|+||+++|..|++.| .+|+|+|+.+.+++.
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g--~~v~~~e~~~~~~~~ 164 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGGN 164 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSS--CCEEEECSSSSSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCcc
Confidence 4679999999999999999999999 999999999876653
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=8e-06 Score=81.52 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+|||||+||+++|..|++.| .+|+|||+.+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G--~~V~vlE~~~~ 40 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRG--LKILLVDSKPW 40 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSS--CCEEEECSSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 478999999999999999999999 99999999864
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=8.9e-06 Score=78.94 Aligned_cols=86 Identities=21% Similarity=0.175 Sum_probs=67.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||||+.|+.+|..|++.+ .+|+++++.+.+.. ...++...+.+.+++.+++++.++.+..
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~-----------~~~~~~~~l~~~l~~~gV~i~~~~~v~~i 209 (367)
T 1xhc_A 143 SGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGAMFLG-----------LDEELSNMIKDMLEETGVKFFLNSELLEA 209 (367)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSSCCTT-----------CCHHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCCeecc-----------CCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 378999999999999999999999 99999998876432 2235666777788888999998876532
Q ss_pred ---EEEecccccccCEEEEccCC
Q 014990 98 ---SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---~v~~~~~~~~~d~lvlAtG~ 117 (415)
.+..+++...+|.||+|+|.
T Consensus 210 ~~~~v~~~~g~i~~D~vi~a~G~ 232 (367)
T 1xhc_A 210 NEEGVLTNSGFIEGKVKICAIGI 232 (367)
T ss_dssp CSSEEEETTEEEECSCEEEECCE
T ss_pred EeeEEEECCCEEEcCEEEECcCC
Confidence 24444434679999999997
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=79.94 Aligned_cols=92 Identities=21% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 166 ~~~~vvIiGgG~~g~e~A~~l~~~g--~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~~ 233 (455)
T 2yqu_A 166 VPKRLIVVGGGVIGLELGVVWHRLG--AEVIVLEYMDRIL--------PT--MDLEVSRAAERVFKKQGLTIRTGVRVTA 233 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 4589999999999999999999999 9999999887542 21 2235556667777778999988865522
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.||+|+|. .|..
T Consensus 234 i~~~~~~v~v~~~~g~~i~~D~vv~A~G~-~p~~ 266 (455)
T 2yqu_A 234 VVPEAKGARVELEGGEVLEADRVLVAVGR-RPYT 266 (455)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECSCE-EECC
T ss_pred EEEeCCEEEEEECCCeEEEcCEEEECcCC-CcCC
Confidence 1222233 3479999999998 4443
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-05 Score=76.53 Aligned_cols=89 Identities=19% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+.. . ....++...+.+.+++.+++++.++.+..
T Consensus 144 ~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~--------~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 212 (384)
T 2v3a_A 144 GKRRVLLLGAGLIGCEFANDLSSGG--YQLDVVAPCEQVMP--------G-LLHPAAAKAVQAGLEGLGVRFHLGPVLAS 212 (384)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSST--------T-TSCHHHHHHHHHHHHTTTCEEEESCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCcchhh--------c-ccCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3689999999999999999999999 99999998775422 1 11245566777778888999988865521
Q ss_pred --------EEEeccc-ccccCEEEEccCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.||+|+|.
T Consensus 213 i~~~~~~~~v~~~~g~~i~~d~vv~a~G~ 241 (384)
T 2v3a_A 213 LKKAGEGLEAHLSDGEVIPCDLVVSAVGL 241 (384)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred EEecCCEEEEEECCCCEEECCEEEECcCC
Confidence 2333333 3479999999998
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-06 Score=80.56 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=40.3
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC-CCCCCccc
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFGLVR 61 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~-~~~gg~~~ 61 (415)
++...++|+|||||++|+++|..|.+.| ++|+|+|+. +.+||.+.
T Consensus 40 ~~~~~~~V~IIGAGiaGL~aA~~L~~~G--~~V~VlE~~~~~vGGr~~ 85 (376)
T 2e1m_A 40 PPGPPKRILIVGAGIAGLVAGDLLTRAG--HDVTILEANANRVGGRIK 85 (376)
T ss_dssp SCCSCCEEEEECCBHHHHHHHHHHHHTS--CEEEEECSCSSCCBTTCC
T ss_pred CCCCCceEEEECCCHHHHHHHHHHHHCC--CcEEEEeccccccCCcee
Confidence 3456889999999999999999999999 999999999 88888643
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=78.78 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=68.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 168 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 235 (464)
T 2eq6_A 168 LPKRLLVIGGGAVGLELGQVYRRLG--AEVTLIEYMPEIL--------PQ--GDPETAALLRRALEKEGIRVRTKTKAVG 235 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhcCCEEEcCCEEEE
Confidence 3579999999999999999999999 9999999887542 21 2245566777778888999998876521
Q ss_pred --------EEEec-c--c---ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLS-E--L---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~-~--~---~~~~d~lvlAtG~~~~~~ 122 (415)
.+... + + ...+|.||+|+|. .|..
T Consensus 236 i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~-~p~~ 273 (464)
T 2eq6_A 236 YEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR-KPRT 273 (464)
T ss_dssp EEEETTEEEEEEEETTCCSCEEEEESEEEECSCE-EESC
T ss_pred EEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc-ccCC
Confidence 13332 3 3 3479999999998 4443
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-05 Score=82.28 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=32.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...++|+|||||+||++||..|++.| .+|+|||+..
T Consensus 19 ~~~yDVIVIGgG~AGl~AAlaLAr~G--~kVlLIEk~~ 54 (641)
T 3cp8_A 19 SHMYDVIVVGAGHAGCEAALAVARGG--LHCLLITSDL 54 (641)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCG
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCC--CcEEEEEecc
Confidence 35689999999999999999999999 9999999874
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.1e-06 Score=81.95 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=37.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||++|+++|.+|++.| .+|+|+|+++.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~ 40 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSAMIGGRFT 40 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCCceeE
Confidence 58999999999999999999999 99999999999888653
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-05 Score=78.27 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 237 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARERIL--------PT--YDSELTAPVAESLKKLGIALHLGHSVEG 237 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEETTCEEEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999987643 21 1234556667777778999988866522
Q ss_pred E----EEec--cc---ccccCEEEEccCCCCCCC
Q 014990 98 S----VSLS--EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ~----v~~~--~~---~~~~d~lvlAtG~~~~~~ 122 (415)
- +... ++ ...+|.||+|+|. .|..
T Consensus 238 i~~~~v~v~~~~G~~~~i~~D~vv~a~G~-~p~~ 270 (458)
T 1lvl_A 238 YENGCLLANDGKGGQLRLEADRVLVAVGR-RPRT 270 (458)
T ss_dssp EETTEEEEECSSSCCCEECCSCEEECCCE-EECC
T ss_pred EEeCCEEEEECCCceEEEECCEEEECcCC-CcCC
Confidence 1 2222 23 3479999999998 4444
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=3.9e-05 Score=75.50 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+.. . ....++...+.+.+++.+++++.++.+..
T Consensus 144 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 212 (408)
T 2gqw_A 144 PQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQPRLMS--------R-AAPATLADFVARYHAAQGVDLRFERSVTG 212 (408)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSST--------T-TSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEEeCCcccc--------c-ccCHHHHHHHHHHHHHcCcEEEeCCEEEE
Confidence 4789999999999999999999999 99999998875421 1 12234566677778888999998866532
Q ss_pred ----EEEeccc-ccccCEEEEccCC
Q 014990 98 ----SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ----~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.||+|+|.
T Consensus 213 i~~~~v~~~~g~~i~~D~vi~a~G~ 237 (408)
T 2gqw_A 213 SVDGVVLLDDGTRIAADMVVVGIGV 237 (408)
T ss_dssp EETTEEEETTSCEEECSEEEECSCE
T ss_pred EECCEEEECCCCEEEcCEEEECcCC
Confidence 2444444 3479999999998
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.7e-06 Score=81.50 Aligned_cols=40 Identities=30% Similarity=0.577 Sum_probs=37.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
|+|+|||||.+|++||.+|++.| .+|+|+|+.+.+||...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAG--HEVEVFERLPITGGRFT 40 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CceEEEeCCCCCCCcee
Confidence 58999999999999999999999 99999999999887653
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=8.2e-06 Score=82.14 Aligned_cols=43 Identities=33% Similarity=0.460 Sum_probs=39.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
.+..++|+|||||+|||+||..|++.| .+|+|+|+.+.+||..
T Consensus 8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~ 50 (489)
T 2jae_A 8 VKGSHSVVVLGGGPAGLCSAFELQKAG--YKVTVLEARTRPGGRV 50 (489)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTC
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeccCCCCCce
Confidence 346789999999999999999999999 9999999999998864
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.8e-05 Score=77.40 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ....++...+.+.+++.+++++.++.+.
T Consensus 192 ~~~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 260 (490)
T 2bc0_A 192 KDIKRVAVVGAGYIGVELAEAFQRKG--KEVVLIDVVDTCL--------AG-YYDRDLTDLMAKNMEEHGIQLAFGETVK 260 (490)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEEETCCEE
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCC--CeEEEEEcccchh--------hh-HHHHHHHHHHHHHHHhCCeEEEeCCEEE
Confidence 45789999999999999999999999 9999999887542 11 1223566677778888899998886552
Q ss_pred e--------EEEecccccccCEEEEccCC
Q 014990 97 S--------SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~~~~~~~d~lvlAtG~ 117 (415)
. .+..+.....+|.||+|+|.
T Consensus 261 ~i~~~~~v~~v~~~g~~i~~D~Vi~a~G~ 289 (490)
T 2bc0_A 261 EVAGNGKVEKIITDKNEYDVDMVILAVGF 289 (490)
T ss_dssp EEECSSSCCEEEESSCEEECSEEEECCCE
T ss_pred EEEcCCcEEEEEECCcEEECCEEEECCCC
Confidence 2 12222233579999999998
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.95 E-value=5.2e-06 Score=82.79 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC----CCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g----~~~~v~lie~~~~~gg~~~ 61 (415)
+++|+|||||++|++||.+|++.| |+.+|+|+|+.+.+||...
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~ 51 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEE
Confidence 579999999999999999999997 6689999999998887543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.5e-06 Score=79.94 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=33.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+||||||||+++|..|++.| ++|+|||+.+.+
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~G--~~v~v~Er~~~~ 36 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKHG--IKVTIYERNSAA 36 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CCEEEEecCCCC
Confidence 378999999999999999999999 999999997654
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.94 E-value=7.7e-06 Score=81.74 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=39.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+..++|+|||||.+|+++|..|++.| .+|+|+|+++.+||...
T Consensus 9 ~~~~dvvVIGaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~ 51 (453)
T 2bcg_G 9 DTDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAA 51 (453)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCcccc
Confidence 35689999999999999999999999 99999999999999754
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=4.4e-05 Score=76.13 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=67.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 236 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGEIL--------SG--FEKQMAAIIKKRLKKKGVEVVTNALAKG 236 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999887542 21 2235566677778888999988876522
Q ss_pred --------EEEec---c-cccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLS---E-LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~---~-~~~~~d~lvlAtG~~~~~~ 122 (415)
.++.. + ....+|.||+|+|. .|..
T Consensus 237 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~-~p~~ 272 (455)
T 1ebd_A 237 AEEREDGVTVTYEANGETKTIDADYVLVTVGR-RPNT 272 (455)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESEEEECSCE-EESC
T ss_pred EEEeCCeEEEEEEeCCceeEEEcCEEEECcCC-Cccc
Confidence 12221 2 23479999999998 4443
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.2e-06 Score=82.15 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=37.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCc--eEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~--~v~lie~~~~~gg~~~ 61 (415)
+++|+|||||.+||++|.+|++.| . +|+|+|+.+.+||...
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G--~~~~V~vlEa~~~~GG~~~ 44 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAP--CPPKVVLVESSERLGGWIR 44 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSS--SCCEEEEECSSSSSBTTCC
T ss_pred CceEEEECCcHHHHHHHHHHHhCC--CCCcEEEEeCCCCCCCceE
Confidence 368999999999999999999999 7 9999999999988763
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=78.06 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+.++|+|||||+.|+.+|..+++.+ .+|+|+++.+.+. +.. ..+....+.+.+++.+++++.+..+..
T Consensus 146 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~ll--------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~ 213 (437)
T 4eqs_A 146 QVDKVLVVGAGYVSLEVLENLYERG--LHPTLIHRSDKIN--------KLM--DADMNQPILDELDKREIPYRLNEEINA 213 (437)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSCCS--------TTS--CGGGGHHHHHHHHHTTCCEEESCCEEE
T ss_pred CCcEEEEECCccchhhhHHHHHhcC--Ccceeeeeecccc--------ccc--cchhHHHHHHHhhccceEEEeccEEEE
Confidence 4678999999999999999999999 9999999887642 111 123445666777888999998877632
Q ss_pred ----EEEecccc-cccCEEEEccCC
Q 014990 98 ----SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 98 ----~v~~~~~~-~~~d~lvlAtG~ 117 (415)
.+..++++ ..+|.|++|+|.
T Consensus 214 ~~~~~v~~~~g~~~~~D~vl~a~G~ 238 (437)
T 4eqs_A 214 INGNEITFKSGKVEHYDMIIEGVGT 238 (437)
T ss_dssp EETTEEEETTSCEEECSEEEECCCE
T ss_pred ecCCeeeecCCeEEeeeeEEEEece
Confidence 34455544 479999999997
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.5e-05 Score=78.60 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+.. . ...++...+.+.+++.+++++.++.+..
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~--------~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 252 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELG--KKVRMIERNDHIGT--------I--YDGDMAEYIYKEADKHHIEILTNENVKA 252 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTT--CEEEEECCGGGTTS--------S--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeCCchhh--------c--CCHHHHHHHHHHHHHcCcEEEcCCEEEE
Confidence 5689999999999999999999999 99999998875432 1 1235566777778888999988765522
Q ss_pred --------EEEecccccccCEEEEccCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~ 117 (415)
.+..+.....+|.||+|+|.
T Consensus 253 i~~~~~v~~v~~~~~~i~~D~vi~a~G~ 280 (480)
T 3cgb_A 253 FKGNERVEAVETDKGTYKADLVLVSVGV 280 (480)
T ss_dssp EEESSBEEEEEETTEEEECSEEEECSCE
T ss_pred EEcCCcEEEEEECCCEEEcCEEEECcCC
Confidence 12233334579999999998
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=6.5e-06 Score=81.34 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=36.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
++|+|||||++|+++|..|++.| .+|+|+|+.+.+||..
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~ 40 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAG--KKVLLLEGGERLGGRA 40 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTC
T ss_pred CCEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCccCee
Confidence 68999999999999999999999 9999999998888764
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=3.7e-05 Score=82.65 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~ 55 (415)
..++|+|||||++|+++|.+|++.| . +|+|||+...
T Consensus 3 ~~~dVvIIGgGi~Gls~A~~La~~G--~~~V~vlE~~~~ 39 (830)
T 1pj5_A 3 STPRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGPL 39 (830)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCC
Confidence 4679999999999999999999999 8 9999999875
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.92 E-value=3.3e-05 Score=78.73 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=68.8
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
....+++++|||||+.|+.+|..+++.| .+|+|+++...+ |. ...++...+.+.++..++.+..+..
T Consensus 219 l~~lP~~lvIIGgG~IGlE~A~~~~~lG--~~VTii~~~~~L---------~~--~D~ei~~~l~~~l~~~gi~~~~~~~ 285 (542)
T 4b1b_A 219 LKKDPGKTLVVGASYVALECSGFLNSLG--YDVTVAVRSIVL---------RG--FDQQCAVKVKLYMEEQGVMFKNGIL 285 (542)
T ss_dssp CSSCCCSEEEECCSHHHHHHHHHHHHHT--CCEEEEESSCSS---------TT--SCHHHHHHHHHHHHHTTCEEEETCC
T ss_pred cccCCceEEEECCCHHHHHHHHHHHhcC--CeEEEecccccc---------cc--cchhHHHHHHHHHHhhcceeecceE
Confidence 3345788999999999999999999999 999999864321 32 2346677788888888999988876
Q ss_pred eceE--------EEeccc-ccccCEEEEccCCCCCCC
Q 014990 95 LGSS--------VSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 95 v~~~--------v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
+... +...+. ...+|.|++|+|. .|+.
T Consensus 286 v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR-~Pnt 321 (542)
T 4b1b_A 286 PKKLTKMDDKILVEFSDKTSELYDTVLYAIGR-KGDI 321 (542)
T ss_dssp EEEEEEETTEEEEEETTSCEEEESEEEECSCE-EESC
T ss_pred EEEEEecCCeEEEEEcCCCeEEEEEEEEcccc-cCCc
Confidence 5321 222222 2368999999997 4443
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=77.10 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=65.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
.++|+|||||+.|+.+|..|++.+ .+|+++++.+.+... ....+....+.+.+++.+++++.+..+..-
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtvv~~~~~~l~~---------~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i 214 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIIDSG--TPASIGIILEYPLER---------QLDRDGGLFLKDKLDRLGIKIYTNSNFEEM 214 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCTT---------TSCHHHHHHHHHHHHTTTCEEECSCCGGGC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CeEEEEEcCCccchh---------hcCHHHHHHHHHHHHhCCCEEEeCCEEEEc
Confidence 578999999999999999999999 999999988764211 112345666777788889999988776432
Q ss_pred EEecccccccCEEEEccCC
Q 014990 99 VSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 99 v~~~~~~~~~d~lvlAtG~ 117 (415)
.....+|.||+|+|.
T Consensus 215 ----g~~~~~D~vv~a~G~ 229 (385)
T 3klj_A 215 ----GDLIRSSCVITAVGV 229 (385)
T ss_dssp ----HHHHHHSEEEECCCE
T ss_pred ----CeEEecCeEEECcCc
Confidence 234579999999998
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=7.2e-06 Score=82.20 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=37.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....++|+|||||++|+++|..|++.| .+|+|+|+.+.+||...
T Consensus 13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~g--~~v~v~E~~~~~GGr~~ 56 (478)
T 2ivd_A 13 RTTGMNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVG 56 (478)
T ss_dssp ----CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCC
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceee
Confidence 346789999999999999999999999 99999999999998653
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.5e-05 Score=76.35 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=68.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 165 ~~~~vvVvGgG~~g~e~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 232 (463)
T 2r9z_A 165 QPKRVAIIGAGYIGIELAGLLRSFG--SEVTVVALEDRLL--------FQ--FDPLLSATLAENMHAQGIETHLEFAVAA 232 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEESSCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4679999999999999999999999 9999999887542 11 1234556667777888999988865421
Q ss_pred --------EEEecccc--cccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELR--QLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~--~~~d~lvlAtG~~~~~~ 122 (415)
.+...++. ..+|.||+|+|. .|..
T Consensus 233 i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~-~p~~ 266 (463)
T 2r9z_A 233 LERDAQGTTLVAQDGTRLEGFDSVIWAVGR-APNT 266 (463)
T ss_dssp EEEETTEEEEEETTCCEEEEESEEEECSCE-EESC
T ss_pred EEEeCCeEEEEEeCCcEEEEcCEEEECCCC-CcCC
Confidence 23444444 589999999998 4443
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=97.90 E-value=8.7e-06 Score=82.71 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|+|||||+||++||..|++.| .+|+|+|+++.+||...
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GGr~~ 44 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTY 44 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcee
Confidence 3578999999999999999999999 99999999999988753
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=78.92 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=38.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+..++|+|||||++|++||..|++.|+ .+|+|+|+.+.+||...
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~-~~v~v~E~~~~~GG~~~ 47 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGF-HDYTILERTDHVGGKCH 47 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSSCSSTTCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEECCCCCCCccc
Confidence 356899999999999999999999862 69999999999988653
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.4e-05 Score=76.81 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=67.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 251 (482)
T 1ojt_A 184 VPGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMDGLM--------QG--ADRDLVKVWQKQNEYRFDNIMVNTKTVA 251 (482)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEECCccc--------cc--cCHHHHHHHHHHHHhcCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999887642 21 2345666777788888999998876522
Q ss_pred --------EEEecc----c-ccccCEEEEccCC
Q 014990 98 --------SVSLSE----L-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~----~-~~~~d~lvlAtG~ 117 (415)
.+...+ + ...+|.||+|+|.
T Consensus 252 i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 252 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred EEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 133332 2 2479999999998
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.3e-05 Score=80.17 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=39.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
.+++|+|||||++|+++|.+|++.|++.+|+|+|+.+.+||..
T Consensus 3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~ 45 (475)
T 3lov_A 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKV 45 (475)
T ss_dssp CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTC
T ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCcee
Confidence 3579999999999999999999998779999999999888753
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=78.84 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=38.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|+|||||++|+++|..|++. | .+|+|+|+.+.+||...
T Consensus 6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g--~~v~v~E~~~~~GG~~~ 48 (399)
T 1v0j_A 6 ARFDLFVVGSGFFGLTIAERVATQLD--KRVLVLERRPHIGGNAY 48 (399)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHHSC--CCEEEECSSSSSSGGGC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeee
Confidence 468999999999999999999999 8 99999999999888754
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.9e-05 Score=75.71 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+... ...++...+.+.+++.+++++.++.+..
T Consensus 182 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~----------~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 249 (478)
T 1v59_A 182 IPKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQPQIGAS----------MDGEVAKATQKFLKKQGLDFKLSTKVIS 249 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSSSS----------SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCceEEEECCCHHHHHHHHHHHHcC--CEEEEEEeCCccccc----------cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4689999999999999999999999 999999988764321 1245666777788888999988865522
Q ss_pred ----------EEEec-----c-cccccCEEEEccCCCCCCC
Q 014990 98 ----------SVSLS-----E-LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ----------~v~~~-----~-~~~~~d~lvlAtG~~~~~~ 122 (415)
.+... + ....+|.||+|+|. .|..
T Consensus 250 i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~-~p~~ 289 (478)
T 1v59_A 250 AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR-RPYI 289 (478)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE-EECC
T ss_pred EEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC-CcCC
Confidence 12222 1 23479999999998 4443
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=73.22 Aligned_cols=93 Identities=18% Similarity=0.260 Sum_probs=69.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ....++...+.+.+++.+++++.++.+..
T Consensus 146 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 214 (452)
T 3oc4_A 146 NSQTVAVIGAGPIGMEAIDFLVKMK--KTVHVFESLENLL--------PK-YFDKEMVAEVQKSLEKQAVIFHFEETVLG 214 (452)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT-TCCHHHHHHHHHHHHTTTEEEEETCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCccc--------cc-cCCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4688999999999999999999999 9999999887542 11 12245667778888888999998866522
Q ss_pred --------EEEecccccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
.+..++....+|.||+|+|. .|..
T Consensus 215 i~~~~~~v~v~~~~g~i~aD~Vv~A~G~-~p~~ 246 (452)
T 3oc4_A 215 IEETANGIVLETSEQEISCDSGIFALNL-HPQL 246 (452)
T ss_dssp EEECSSCEEEEESSCEEEESEEEECSCC-BCCC
T ss_pred EEccCCeEEEEECCCEEEeCEEEECcCC-CCCh
Confidence 13333344579999999998 4433
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8.3e-06 Score=81.15 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..++|+|||||++|++||..|++.| .+|+|+|+++.+||..
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~ 44 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAG--LSVAVIEARDRVGGRT 44 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCCCCCce
Confidence 3578999999999999999999998 9999999999998875
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.6e-05 Score=73.05 Aligned_cols=88 Identities=14% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+.. . ....++...+.+.+++.+++++.++.+..
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i 220 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFG--VNVTLLEALPRVLA--------R-VAGEALSEFYQAEHRAHGVDLRTGAAMDCI 220 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTTT--------T-TSCHHHHHHHHHHHHHTTCEEEETCCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCchhh--------h-hcCHHHHHHHHHHHHhCCCEEEECCEEEEE
Confidence 689999999999999999999999 99999998876421 1 12245666777778888999998866522
Q ss_pred --------EEEecccc-cccCEEEEccCC
Q 014990 98 --------SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~~-~~~d~lvlAtG~ 117 (415)
.+.+.++. ..+|.||+|+|.
T Consensus 221 ~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~ 249 (415)
T 3lxd_A 221 EGDGTKVTGVRMQDGSVIPADIVIVGIGI 249 (415)
T ss_dssp EESSSBEEEEEESSSCEEECSEEEECSCC
T ss_pred EecCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 23333443 479999999998
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7e-05 Score=74.95 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. | ...++...+.+.+++.+++++.++.+..
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 241 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFARLG--SKVTVLARNTLFF--------R---EDPAIGEAVTAAFRAEGIEVLEHTQASQ 241 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------T---SCHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEEECCccC--------C---CCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence 4689999999999999999999999 9999999877542 2 1235666777778888999988765522
Q ss_pred --------EEEecccccccCEEEEccCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~ 117 (415)
.+..+.....+|.||+|+|.
T Consensus 242 i~~~~~~~~v~~~~~~i~aD~Vv~a~G~ 269 (467)
T 1zk7_A 242 VAHMDGEFVLTTTHGELRADKLLVATGR 269 (467)
T ss_dssp EEEETTEEEEEETTEEEEESEEEECSCE
T ss_pred EEEeCCEEEEEECCcEEEcCEEEECCCC
Confidence 12333334579999999998
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=4.4e-05 Score=75.12 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+... ....++...+.+.+++.+++++.++.+.
T Consensus 141 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtvv~~~~~~l~~---------~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 209 (410)
T 3ef6_A 141 TSATRLLIVGGGLIGCEVATTARKLG--LSVTILEAGDELLVR---------VLGRRIGAWLRGLLTELGVQVELGTGVV 209 (410)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSSHH---------HHCHHHHHHHHHHHHHHTCEEECSCCEE
T ss_pred ccCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCccchh---------hcCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 35789999999999999999999999 999999987754211 0123456667777888899999877652
Q ss_pred e--------EEEecccc-cccCEEEEccCC
Q 014990 97 S--------SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~~~~-~~~d~lvlAtG~ 117 (415)
. .+...++. ..+|.||+|+|.
T Consensus 210 ~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~ 239 (410)
T 3ef6_A 210 GFSGEGQLEQVMASDGRSFVADSALICVGA 239 (410)
T ss_dssp EEECSSSCCEEEETTSCEEECSEEEECSCE
T ss_pred EEeccCcEEEEEECCCCEEEcCEEEEeeCC
Confidence 2 24444443 479999999998
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.6e-05 Score=77.83 Aligned_cols=43 Identities=33% Similarity=0.340 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
...++|+|||||++|+++|..|++.| .+|+|+|+.+.+||...
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~ 69 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSG--QRVLIVDRRPHIGGNAY 69 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGC
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCC--CceEEEeccCCCCCccc
Confidence 35789999999999999999999998 99999999999888754
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6.8e-05 Score=74.71 Aligned_cols=92 Identities=18% Similarity=0.269 Sum_probs=68.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 233 (450)
T 1ges_A 166 LPERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFDAPL--------PS--FDPMISETLVEVMNAEGPQLHTNAIPKA 233 (450)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHSCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CEEEEEEeCCchh--------hh--hhHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4679999999999999999999999 9999999887542 21 1234566677777788999988865421
Q ss_pred ---------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 ---------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ---------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.||+|+|. .|..
T Consensus 234 i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~-~p~~ 267 (450)
T 1ges_A 234 VVKNTDGSLTLELEDGRSETVDCLIWAIGR-EPAN 267 (450)
T ss_dssp EEECTTSCEEEEETTSCEEEESEEEECSCE-EESC
T ss_pred EEEeCCcEEEEEECCCcEEEcCEEEECCCC-CcCC
Confidence 2333333 3479999999998 4443
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.81 E-value=9e-05 Score=72.69 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=67.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+... ....++...+.+.+++.+++++.++.+..
T Consensus 141 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtvv~~~~~~~~~---------~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 209 (404)
T 3fg2_P 141 DKKHVVVIGAGFIGLEFAATARAKG--LEVDVVELAPRVMAR---------VVTPEISSYFHDRHSGAGIRMHYGVRATE 209 (404)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTT---------TSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCCcchhh---------ccCHHHHHHHHHHHHhCCcEEEECCEEEE
Confidence 4678999999999999999999999 999999988754211 12235666777788888999998865521
Q ss_pred ---------EEEecccc-cccCEEEEccCC
Q 014990 98 ---------SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~~~~-~~~d~lvlAtG~ 117 (415)
.+...++. ..+|.||+|+|.
T Consensus 210 i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~ 239 (404)
T 3fg2_P 210 IAAEGDRVTGVVLSDGNTLPCDLVVVGVGV 239 (404)
T ss_dssp EEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred EEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence 23344443 479999999998
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0001 Score=73.83 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=66.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+... . ...++...+.+.+++.+++++.++.+..
T Consensus 177 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~-------~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 245 (474)
T 1zmd_A 177 VPEKMVVIGAGVIGVELGSVWQRLG--ADVTAVEFLGHVGGV-------G--IDMEISKNFQRILQKQGFKFKLNTKVTG 245 (474)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSSCS-------S--CCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCceEEEECCCHHHHHHHHHHHHcC--CEEEEEeccCccCCc-------c--cCHHHHHHHHHHHHHCCCEEEeCceEEE
Confidence 4589999999999999999999999 999999988754210 1 2235566777788888999998876522
Q ss_pred ---------EEEe-----cc-cccccCEEEEccCC
Q 014990 98 ---------SVSL-----SE-LRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~-----~~-~~~~~d~lvlAtG~ 117 (415)
.++. .+ ....+|.||+|+|.
T Consensus 246 i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~ 280 (474)
T 1zmd_A 246 ATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR 280 (474)
T ss_dssp EEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE
T ss_pred EEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC
Confidence 1221 12 23478999999998
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.79 E-value=2e-05 Score=79.60 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..++|+|||||++|+++|..|++.| .+|+|+|+.+.+||..
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~ 52 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKL 52 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCce
Confidence 4689999999999999999999999 9999999999999864
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.6e-05 Score=80.12 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=37.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
++|+|||||+||++||..|.+.| .+|+|+|+.+.+||..
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GGr~ 78 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAG--FKTLLLEARDRIGGRS 78 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSBSBTTC
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcc
Confidence 79999999999999999999999 9999999999999864
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.7e-05 Score=74.58 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=68.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~Gv~i~~~~~v~~ 251 (479)
T 2hqm_A 184 QPKKVVVVGAGYIGIELAGVFHGLG--SETHLVIRGETVL--------RK--FDECIQNTITDHYVKEGINVHKLSKIVK 251 (479)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEeCCccc--------cc--cCHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence 5689999999999999999999999 9999999887642 21 2235566677777788999988865421
Q ss_pred ----------EEEeccc--ccccCEEEEccCCCCCCC
Q 014990 98 ----------SVSLSEL--RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ----------~v~~~~~--~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.||+|+|. .|..
T Consensus 252 i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~-~p~~ 287 (479)
T 2hqm_A 252 VEKNVETDKLKIHMNDSKSIDDVDELIWTIGR-KSHL 287 (479)
T ss_dssp EEECC-CCCEEEEETTSCEEEEESEEEECSCE-EECC
T ss_pred EEEcCCCcEEEEEECCCcEEEEcCEEEECCCC-CCcc
Confidence 2334444 3579999999998 4443
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.3e-05 Score=79.02 Aligned_cols=43 Identities=37% Similarity=0.475 Sum_probs=39.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
....++|+|||||++|+++|..|++.| .+|+|+|+.+.+||..
T Consensus 30 ~~~~~~v~IiGaG~~Gl~aA~~l~~~g--~~v~vlE~~~~~gg~~ 72 (498)
T 2iid_A 30 TSNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRV 72 (498)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCce
Confidence 345789999999999999999999999 9999999999998865
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=73.70 Aligned_cols=93 Identities=20% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+.
T Consensus 196 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~v~~~~~v~ 263 (491)
T 3urh_A 196 KVPASMIVVGGGVIGLELGSVWARLG--AKVTVVEFLDTIL--------GG--MDGEVAKQLQRMLTKQGIDFKLGAKVT 263 (491)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecccccc--------cc--CCHHHHHHHHHHHHhCCCEEEECCeEE
Confidence 35689999999999999999999999 9999999887642 11 224566677777888899998887652
Q ss_pred e--------EEEecc---c---ccccCEEEEccCCCCCCC
Q 014990 97 S--------SVSLSE---L---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 97 ~--------~v~~~~---~---~~~~d~lvlAtG~~~~~~ 122 (415)
. .+...+ + ...+|.||+|+|. .|..
T Consensus 264 ~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~-~p~~ 302 (491)
T 3urh_A 264 GAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR-KPST 302 (491)
T ss_dssp EEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC-EECC
T ss_pred EEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC-ccCC
Confidence 2 122221 2 3479999999997 4443
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=74.74 Aligned_cols=86 Identities=10% Similarity=-0.020 Sum_probs=66.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece--
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS-- 97 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 97 (415)
++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 282 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTEPLK--------LI--KDNETRAYVLDRMKEQGMEIISGSNVTRIE 282 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------TC--CSHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccc--------cc--ccHHHHHHHHHHHHhCCcEEEECCEEEEEE
Confidence 89999999999999999999999 9999999887532 21 2345666777788888999988866521
Q ss_pred ----------EEEeccc--ccccCEEEEccCC
Q 014990 98 ----------SVSLSEL--RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ----------~v~~~~~--~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.||+|+|.
T Consensus 283 ~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~ 314 (523)
T 1mo9_A 283 EDANGRVQAVVAMTPNGEMRIETDFVFLGLGE 314 (523)
T ss_dssp ECTTSBEEEEEEEETTEEEEEECSCEEECCCC
T ss_pred EcCCCceEEEEEEECCCcEEEEcCEEEECcCC
Confidence 2333344 3579999999998
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.5e-05 Score=77.38 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=36.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~ 59 (415)
..++|||||||++|+++|.+|++.| . +|+|+|+.+..++.
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~~G--~~~V~vlE~~~~~~~~ 45 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLARRG--YTNVTVLDPYPVPSAI 45 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSCSSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCCCC
Confidence 4679999999999999999999999 8 99999999876543
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.6e-05 Score=80.64 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..++|+|||||+|||+||..|.+.| ..+|+|+|+.+.+||..
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G-~~~V~VlEa~~riGGr~ 48 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNG-IQDCLVLEARDRVGGRL 48 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTT-CCSEEEECSSSSSBTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcC-CCCEEEEeCCCCCCCce
Confidence 4579999999999999999999986 37999999999999864
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.8e-05 Score=75.90 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=37.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
.++|+|||||++|+++|..|.+.| .+|+|+|+.+.+||...
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~ 43 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNSY 43 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecCCcCCccc
Confidence 479999999999999999999998 99999999999888653
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=73.43 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gv~i~~~~~v~~i 243 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGNRIL--------RK--FDESVINVLENDMKKNNINIVTFADVVEI 243 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred CCeEEEECChHHHHHHHHHHHHcC--CeEEEEecCCccC--------cc--cchhhHHHHHHHHHhCCCEEEECCEEEEE
Confidence 689999999999999999999999 9999999877642 21 1235566777778888999988865421
Q ss_pred --------EEEecccc--cccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELR--QLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~--~~~d~lvlAtG~~~~~~ 122 (415)
.+...++. ..+|.||+|+|. .|..
T Consensus 244 ~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~-~p~~ 277 (500)
T 1onf_A 244 KKVSDKNLSIHLSDGRIYEHFDHVIYCVGR-SPDT 277 (500)
T ss_dssp EESSTTCEEEEETTSCEEEEESEEEECCCB-CCTT
T ss_pred EEcCCceEEEEECCCcEEEECCEEEECCCC-CcCC
Confidence 23333333 579999999998 4443
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00013 Score=72.96 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=67.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 170 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 237 (464)
T 2a8x_A 170 LPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIVEFLPRAL--------PN--EDADVSKEIEKQFKKLGVTILTATKVES 237 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEECSCEEEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEeCcEEEE
Confidence 4689999999999999999999999 9999999887542 21 2235566677778888999988876522
Q ss_pred --------EEEec-cc---ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLS-EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~-~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.+... ++ ...+|.||+|+|. .|..
T Consensus 238 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~-~p~~ 273 (464)
T 2a8x_A 238 IADGGSQVTVTVTKDGVAQELKAEKVLQAIGF-APNV 273 (464)
T ss_dssp EEECSSCEEEEEESSSCEEEEEESEEEECSCE-EECC
T ss_pred EEEcCCeEEEEEEcCCceEEEEcCEEEECCCC-CccC
Confidence 12222 22 3479999999998 4443
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00015 Score=72.52 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=65.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHh-hccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~ 96 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. |. ...++...+.+.+ ++.+++++.++.+.
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~~gv~i~~~~~v~ 240 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWARLG--AEVTVVEFAPRCA--------PT--LDEDVTNALVGALAKNEKMKFMTSTKVV 240 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCCEEECSCEEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC--CEEEEEecCCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEeCCEEE
Confidence 4689999999999999999999999 9999999887542 21 2235566777777 78899998886652
Q ss_pred e--------EEEec--cc---ccccCEEEEccCC
Q 014990 97 S--------SVSLS--EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~--~~---~~~~d~lvlAtG~ 117 (415)
. .+... ++ ...+|.||+|+|.
T Consensus 241 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~ 274 (468)
T 2qae_A 241 GGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR 274 (468)
T ss_dssp EEEECSSSEEEEEECC---EEEEEESEEEECSCE
T ss_pred EEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc
Confidence 1 12322 22 3479999999998
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00012 Score=72.93 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=66.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +. ....++...+.+.+++.+++++.++.+..
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 216 (452)
T 2cdu_A 148 KAKTITIIGSGYIGAELAEAYSNQN--YNVNLIDGHERVL--------YK-YFDKEFTDILAKDYEAHGVNLVLGSKVAA 216 (452)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEEESSCEEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHhcC--CEEEEEEcCCchh--------hh-hhhhhHHHHHHHHHHHCCCEEEcCCeeEE
Confidence 4678999999999999999999998 9999999877542 11 12235666777788888999988875522
Q ss_pred E---------EEecccccccCEEEEccCC
Q 014990 98 S---------VSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ~---------v~~~~~~~~~d~lvlAtG~ 117 (415)
- +..+.....+|.||+|+|.
T Consensus 217 i~~~~~~v~~v~~~g~~i~~D~vv~a~G~ 245 (452)
T 2cdu_A 217 FEEVDDEIITKTLDGKEIKSDIAILCIGF 245 (452)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred EEcCCCeEEEEEeCCCEEECCEEEECcCC
Confidence 1 2222223478999999998
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00015 Score=73.23 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=66.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~---g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
..++|+|||||+.|+.+|..|.+. + .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.
T Consensus 190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~ 257 (495)
T 2wpf_A 190 PPRRVLTVGGGFISVEFAGIFNAYKPPG--GKVTLCYRNNLIL--------RG--FDETIREEVTKQLTANGIEIMTNEN 257 (495)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTT--CEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEESCC
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 467999999999999999999999 7 9999999887542 21 2235566777778888999988865
Q ss_pred ece---------EEEeccc-ccccCEEEEccCC
Q 014990 95 LGS---------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 95 v~~---------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
+.. .+...++ ...+|.||+|+|.
T Consensus 258 v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 290 (495)
T 2wpf_A 258 PAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR 290 (495)
T ss_dssp EEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence 522 2333333 3479999999998
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=75.70 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=36.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
++|+|||||++|+++|..|++.| .+|+|+|+.+.+||..
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~ 40 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNA 40 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGG
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCcce
Confidence 58999999999999999999998 9999999999888865
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=73.32 Aligned_cols=88 Identities=20% Similarity=0.139 Sum_probs=67.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~---g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
..++++|||||+.|+.+|..|.+. + .+|+++++.+.+. |. ...++...+.+.+++.+++++.++.
T Consensus 186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~ 253 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAYKARG--GQVDLAYRGDMIL--------RG--FDSELRKQLTEQLRANGINVRTHEN 253 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCC
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhccCc--CeEEEEEcCCCcc--------cc--cCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 467999999999999999999999 8 9999999887542 21 2235666777788888999998865
Q ss_pred ece---------EEEeccc-ccccCEEEEccCC
Q 014990 95 LGS---------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 95 v~~---------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
+.. .+...++ ...+|.||+|+|.
T Consensus 254 v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~ 286 (490)
T 1fec_A 254 PAKVTKNADGTRHVVFESGAEADYDVVMLAIGR 286 (490)
T ss_dssp EEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence 522 2333333 3579999999998
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=9.4e-05 Score=73.99 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=66.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 243 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFASEIV--------PT--MDAEIRKQFQRSLEKQGMKFKLKTKVVG 243 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCccc--------cc--ccHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4689999999999999999999999 9999999887542 21 2235566777778888999988876521
Q ss_pred --------EEEec---c---cccccCEEEEccCC
Q 014990 98 --------SVSLS---E---LRQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~---~---~~~~~d~lvlAtG~ 117 (415)
.+... + ....+|.||+|+|.
T Consensus 244 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 277 (470)
T 1dxl_A 244 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR 277 (470)
T ss_dssp EECSSSSEEEEEEESSSCCCEEEEESEEECCCCE
T ss_pred EEEcCCeEEEEEEecCCCcceEEECCEEEECCCC
Confidence 12222 2 23479999999998
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.3e-05 Score=75.88 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~~ 56 (415)
..++|+|||||++|+++|..|++.| .+ |+|||+.+.+
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~~~ 40 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEI 40 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCCCc
Confidence 4579999999999999999999999 99 9999998654
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=70.91 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+.. . ....++...+.+.+++.+++++.++.+..
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~G--~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 216 (431)
T 1q1r_A 148 ADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAARVLE--------R-VTAPPVSAFYEHLHREAGVDIRTGTQVCG 216 (431)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTT--------T-TSCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCC--CEEEEEEeCCcccc--------c-hhhHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence 4789999999999999999999999 99999998765421 1 12234556667777778999988765421
Q ss_pred -----------EEEeccc-ccccCEEEEccCC
Q 014990 98 -----------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 -----------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~ 248 (431)
T 1q1r_A 217 FEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL 248 (431)
T ss_dssp EEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred EEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence 1233333 2479999999997
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=72.15 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=66.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||||+.|+.+|..|++.+ .+|+++++.+.+.. . ...++...+.+.++.. ++++.++.+.
T Consensus 172 ~~~k~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l~--------~--~d~~~~~~l~~~l~~~-V~i~~~~~v~ 238 (492)
T 3ic9_A 172 DLPKSVAVFGPGVIGLELGQALSRLG--VIVKVFGRSGSVAN--------L--QDEEMKRYAEKTFNEE-FYFDAKARVI 238 (492)
T ss_dssp SCCSEEEEESSCHHHHHHHHHHHHTT--CEEEEECCTTCCTT--------C--CCHHHHHHHHHHHHTT-SEEETTCEEE
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEECCcccc--------c--CCHHHHHHHHHHHhhC-cEEEECCEEE
Confidence 35789999999999999999999999 99999998886421 1 1235556666777765 8888776652
Q ss_pred e--------EEEec--cc---ccccCEEEEccCCCCCCC
Q 014990 97 S--------SVSLS--EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 97 ~--------~v~~~--~~---~~~~d~lvlAtG~~~~~~ 122 (415)
. .+... ++ ...+|.||+|+|. .|..
T Consensus 239 ~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~-~p~~ 276 (492)
T 3ic9_A 239 STIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR-KANV 276 (492)
T ss_dssp EEEECSSSEEEEEECTTCCEEEEEESEEEECSCC-EESC
T ss_pred EEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC-ccCC
Confidence 2 13322 22 3479999999998 4443
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00024 Score=71.16 Aligned_cols=89 Identities=15% Similarity=0.295 Sum_probs=67.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+.
T Consensus 178 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~v~~~~~v~ 245 (476)
T 3lad_A 178 NVPGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMDKFL--------PA--VDEQVAKEAQKILTKQGLKILLGARVT 245 (476)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCEEE
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEECCEEE
Confidence 35679999999999999999999999 9999999887542 21 224566677778888899999887653
Q ss_pred e--------EEEecc----cccccCEEEEccCC
Q 014990 97 S--------SVSLSE----LRQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~~----~~~~~d~lvlAtG~ 117 (415)
. .+...+ ....+|.||+|+|.
T Consensus 246 ~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~ 278 (476)
T 3lad_A 246 GTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR 278 (476)
T ss_dssp EEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred EEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence 2 122222 13478999999998
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=3.1e-05 Score=75.60 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
.++|+|||||++|+++|..|++.| .+|+|+|+.+..+
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~~ 40 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAERG--HRVLVLERHTFFN 40 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCC
Confidence 479999999999999999999999 9999999987654
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00018 Score=74.09 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=67.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 253 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRERG--IEVTLVEMANQVM--------PP--IDYEMAAYVHEHMKNHDVELVFEDGVDA 253 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCccc--------cc--CCHHHHHHHHHHHHHcCCEEEECCeEEE
Confidence 4679999999999999999999999 9999999877532 22 2235566777778888999998776522
Q ss_pred ------EEEeccc-ccccCEEEEccCC
Q 014990 98 ------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.||+|+|.
T Consensus 254 i~~~~~~v~~~~g~~i~~D~Vi~a~G~ 280 (588)
T 3ics_A 254 LEENGAVVRLKSGSVIQTDMLILAIGV 280 (588)
T ss_dssp EEGGGTEEEETTSCEEECSEEEECSCE
T ss_pred EecCCCEEEECCCCEEEcCEEEEccCC
Confidence 2334333 3479999999997
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0003 Score=70.51 Aligned_cols=89 Identities=11% Similarity=0.103 Sum_probs=66.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+.
T Consensus 185 ~~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~~~~~l~~~gv~i~~~~~v~ 252 (478)
T 3dk9_A 185 ELPGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL--------RS--FDSMISTNCTEELENAGVEVLKFSQVK 252 (478)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEETTEEEE
T ss_pred hcCccEEEECCCHHHHHHHHHHHHcC--CeEEEEEeCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 34689999999999999999999999 9999999877542 11 123556677777888899998886552
Q ss_pred e----------EEEecc--------cccccCEEEEccCC
Q 014990 97 S----------SVSLSE--------LRQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~----------~v~~~~--------~~~~~d~lvlAtG~ 117 (415)
. .+...+ ....+|.||+|+|.
T Consensus 253 ~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~ 291 (478)
T 3dk9_A 253 EVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR 291 (478)
T ss_dssp EEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred EEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence 1 122222 23479999999997
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00029 Score=66.19 Aligned_cols=86 Identities=22% Similarity=0.213 Sum_probs=63.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. + ...+...+.+.+++.+++++.++.+..
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~----~~~~~~~l~~~l~~~gv~i~~~~~v~~ 209 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR--------A----EKILIKRLMDKVENGNIILHTNRTLEE 209 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------C----CHHHHHHHHHHHHTSSEEEECSCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeCCccc--------c----CHHHHHHHHHhcccCCeEEEcCceeEE
Confidence 4678999999999999999999998 9999999876531 1 123445566667778999988876521
Q ss_pred ---------EEEecc----c---ccccCEEEEccCC
Q 014990 98 ---------SVSLSE----L---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~~----~---~~~~d~lvlAtG~ 117 (415)
.+...+ + ...+|.||+|+|.
T Consensus 210 i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~ 245 (320)
T 1trb_A 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 245 (320)
T ss_dssp EEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred EEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence 133322 2 3478999999997
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.63 E-value=3.4e-05 Score=76.41 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 368999999999999999999999 9999999876
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00024 Score=71.70 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~V~~ 248 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVL--------PY--EDADAALVLEESFAERGVRLFKNARAAS 248 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTT--CCEEEECSSSSSS--------CC--SSHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4688999999999999999999999 9999999887542 22 2235666777788888999998866522
Q ss_pred --------EEEeccc-ccccCEEEEccCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.||+|+|.
T Consensus 249 i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 277 (499)
T 1xdi_A 249 VTRTGAGVLVTMTDGRTVEGSHALMTIGS 277 (499)
T ss_dssp EEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred EEEeCCEEEEEECCCcEEEcCEEEECCCC
Confidence 1222233 3479999999998
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.61 E-value=5.8e-05 Score=79.03 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=38.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...++|+|||+|++|+++|..|.+.| ++|+|+|+.+.+||..
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~ 146 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV 146 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTC
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCcc
Confidence 46789999999999999999999999 9999999999988854
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=7e-05 Score=72.13 Aligned_cols=36 Identities=31% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||.+|+++|..|++.| .+|+|+|+...
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~~~ 40 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKG--YSVHILARDLP 40 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccCC
Confidence 5679999999999999999999999 99999999764
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00026 Score=67.98 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=61.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccC-eEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 96 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+... . ..+....+......+.+.+++.+ ++++.+..+.
T Consensus 165 ~~~~vvVvG~G~~g~e~a~~l~~~g--~~V~lv~~~~~~~~~-~--~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~ 239 (369)
T 3d1c_A 165 NKGQYVVIGGNESGFDAAYQLAKNG--SDIALYTSTTGLNDP-D--ADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVK 239 (369)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTT--CEEEEECC-------------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHhcC--CeEEEEecCCCCCCC-C--CCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEE
Confidence 4568999999999999999999998 999999988654311 0 11222233455566777777775 9888775542
Q ss_pred e--------EEEecccc-c-ccCEEEEccCC
Q 014990 97 S--------SVSLSELR-Q-LYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~~~~-~-~~d~lvlAtG~ 117 (415)
. .+...++. . .+|.||+|||.
T Consensus 240 ~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~ 270 (369)
T 3d1c_A 240 DIDFNNGQYHISFDSGQSVHTPHEPILATGF 270 (369)
T ss_dssp EEEEETTEEEEEESSSCCEEESSCCEECCCB
T ss_pred EEEecCCceEEEecCCeEeccCCceEEeecc
Confidence 1 23333333 2 35999999998
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=4.8e-05 Score=77.10 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
..++|||||+|+||+++|..|++.| .+|+|+||.+..||.
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G--~~V~vlEk~~~~GG~ 79 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAG--ADVLVLERTSGWGGA 79 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTT
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCc
Confidence 3578999999999999999999999 999999999887654
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00032 Score=69.68 Aligned_cols=88 Identities=18% Similarity=0.119 Sum_probs=64.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+.. . ....++...+.+.+++. ++++.++.+..
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~-v~i~~~~~v~~ 214 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQG--KNVTMIVRGERVLR--------R-SFDKEVTDILEEKLKKH-VNLRLQEITMK 214 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTTT--------T-TSCHHHHHHHHHHHTTT-SEEEESCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CeEEEEEcCCccch--------h-hcCHHHHHHHHHHHHhC-cEEEeCCeEEE
Confidence 4679999999999999999999999 99999998875421 1 01235566677777777 88887765522
Q ss_pred --------EEEecccccccCEEEEccCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~ 117 (415)
.+..+.....+|.||+|+|.
T Consensus 215 i~~~~~v~~v~~~g~~i~~D~Vv~a~G~ 242 (449)
T 3kd9_A 215 IEGEERVEKVVTDAGEYKAELVILATGI 242 (449)
T ss_dssp EECSSSCCEEEETTEEEECSEEEECSCE
T ss_pred EeccCcEEEEEeCCCEEECCEEEEeeCC
Confidence 12222233579999999998
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00027 Score=70.62 Aligned_cols=89 Identities=12% Similarity=0.090 Sum_probs=68.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++++|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+.
T Consensus 168 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vt~v~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 235 (463)
T 4dna_A 168 ALPESILIAGGGYIAVEFANIFHGLG--VKTTLIYRGKEIL--------SR--FDQDMRRGLHAAMEEKGIRILCEDIIQ 235 (463)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEECCCEEE
Confidence 35789999999999999999999999 9999999887532 11 123566777778888899999876552
Q ss_pred e---------EEE-ecccccccCEEEEccCC
Q 014990 97 S---------SVS-LSELRQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~---------~v~-~~~~~~~~d~lvlAtG~ 117 (415)
. .+. .+++...+|.||+|+|.
T Consensus 236 ~i~~~~~~~~~v~~~~~g~i~aD~Vv~a~G~ 266 (463)
T 4dna_A 236 SVSADADGRRVATTMKHGEIVADQVMLALGR 266 (463)
T ss_dssp EEEECTTSCEEEEESSSCEEEESEEEECSCE
T ss_pred EEEEcCCCEEEEEEcCCCeEEeCEEEEeeCc
Confidence 1 233 33444679999999998
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00033 Score=70.11 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=66.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
..++|+|||+|+.|+.+|..|++. + .+|+++++.+.+. +. ....++...+.+.+++.+++++.++.+.
T Consensus 158 ~~~~vvViGgG~~g~e~A~~l~~~~g--~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 226 (472)
T 3iwa_A 158 EVSKAVIVGGGFIGLEMAVSLADMWG--IDTTVVELADQIM--------PG-FTSKSLSQMLRHDLEKNDVVVHTGEKVV 226 (472)
T ss_dssp SCSEEEEECCSHHHHHHHHHHHHHHC--CEEEEECSSSSSS--------TT-TSCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcC--CcEEEEEccCccc--------cc-ccCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 468999999999999999999999 9 9999999876532 20 1223566677778888899999886552
Q ss_pred e--------EEEeccc-ccccCEEEEccCC
Q 014990 97 S--------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
. .+...++ ...+|.||+|+|.
T Consensus 227 ~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~ 256 (472)
T 3iwa_A 227 RLEGENGKVARVITDKRTLDADLVILAAGV 256 (472)
T ss_dssp EEEESSSBEEEEEESSCEEECSEEEECSCE
T ss_pred EEEccCCeEEEEEeCCCEEEcCEEEECCCC
Confidence 2 1233333 3479999999998
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=4e-05 Score=73.52 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC----CCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g----~~~~v~lie~~~~ 55 (415)
++|+|||||.+|+++|.+|++.| |+.+|+|+|+...
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 58999999999999999999996 5689999999864
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=5.4e-05 Score=73.38 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
.++|+|||||++|+++|..|++.| .+|+|||+.+..+
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~G--~~V~vie~~~~~~ 39 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDPPH 39 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence 478999999999999999999999 9999999987654
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.57 E-value=7.5e-05 Score=79.98 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...++|+|||+|++|+++|..|.+.| ++|+|+|+.+.+||.+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g--~~v~v~E~~~~~GG~~ 317 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV 317 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCcCCCce
Confidence 46789999999999999999999999 9999999999998864
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=6.3e-05 Score=75.72 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=39.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~ 62 (415)
..++|+|||||++|+++|..|++.+ ..+|+|+|+.+.+||.+..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence 5689999999999999999999986 3599999999999887653
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00037 Score=70.00 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=67.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+.
T Consensus 189 ~~~~~v~ViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~ 256 (484)
T 3o0h_A 189 KLPKSIVIVGGGYIGVEFANIFHGLG--VKTTLLHRGDLIL--------RN--FDYDLRQLLNDAMVAKGISIIYEATVS 256 (484)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEESSCCEE
T ss_pred hcCCcEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 35789999999999999999999999 9999999887542 21 123556667777788899998876652
Q ss_pred e--------EEEeccc-ccccCEEEEccCC
Q 014990 97 S--------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
. .+...++ ...+|.||+|+|.
T Consensus 257 ~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~ 286 (484)
T 3o0h_A 257 QVQSTENCYNVVLTNGQTICADRVMLATGR 286 (484)
T ss_dssp EEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred EEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence 2 2333444 3479999999998
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00031 Score=70.76 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=64.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH----cCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK----AHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~----~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
..++|+|||||+.|+.+|..|++ .+ .+|+++++.+.+.. ...+.++...+.+.+++.+++++.++
T Consensus 179 ~~~~vvViGgG~iG~E~A~~l~~~~~~~g--~~V~~v~~~~~~~~---------~~l~~~~~~~~~~~l~~~GV~v~~~~ 247 (493)
T 1m6i_A 179 EVKSITIIGGGFLGSELACALGRKARALG--TEVIQLFPEKGNMG---------KILPEYLSNWTMEKVRREGVKVMPNA 247 (493)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHT--CEEEEECSSSSTTT---------TTSCHHHHHHHHHHHHTTTCEEECSC
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhhhhcC--CEEEEEecCccccc---------ccCCHHHHHHHHHHHHhcCCEEEeCC
Confidence 36899999999999999999987 35 89999987754211 11123556667777888899999886
Q ss_pred Eece--------EEEeccc-ccccCEEEEccCC
Q 014990 94 TLGS--------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 94 ~v~~--------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+.. .+...++ ...+|.||+|+|.
T Consensus 248 ~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~ 280 (493)
T 1m6i_A 248 IVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 280 (493)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred EEEEEEecCCeEEEEECCCCEEECCEEEECCCC
Confidence 5522 1333333 3479999999998
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.54 E-value=7.7e-05 Score=73.97 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=38.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..++|+|||+|++|+++|..|++.| .+|+++|+++.+||..
T Consensus 5 ~~~~v~iiG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~ 45 (433)
T 1d5t_A 5 EEYDVIVLGTGLTECILSGIMSVNG--KKVLHMDRNPYYGGES 45 (433)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCccccc
Confidence 5679999999999999999999999 9999999999988864
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00043 Score=65.55 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=64.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. +. .+....+.+.+++.+++++.++.+..
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~~g--~~V~~v~~~~~~~--------~~----~~~~~~l~~~l~~~gv~v~~~~~v~~ 216 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLDTA--RRITLIHRRPQFR--------AH----EASVKELMKAHEEGRLEVLTPYELRR 216 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTS--SEEEEECSSSSCC--------SC----HHHHHHHHHHHHTTSSEEETTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEcCCccC--------cc----HHHHHHHHhccccCCeEEecCCccee
Confidence 4679999999999999999999998 9999999876531 11 23445666677777899988865521
Q ss_pred --------EEEec---cc---ccccCEEEEccCC
Q 014990 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~---~~---~~~~d~lvlAtG~ 117 (415)
.+... ++ ...+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (335)
T 2zbw_A 217 VEGDERVRWAVVFHNQTQEELALEVDAVLILAGY 250 (335)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred EccCCCeeEEEEEECCCCceEEEecCEEEEeecC
Confidence 23332 23 3479999999997
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=1.6e-05 Score=80.46 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=50.7
Q ss_pred ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcC----CCCCCCC-CCCCCCCCeEEEEcCChhHHHHHHHHhcC
Q 014990 107 LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG----HPDGKNL-SPDLKSTDTAVILGQGNVALDVARILLRP 181 (415)
Q Consensus 107 ~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~----~~~~~~~-~~~~~~~k~V~VVG~G~sg~e~a~~L~~~ 181 (415)
.||.+++++|+. ++.+++++.+.+++............ ... ... ........+|+|||+|++|+.+|..|++
T Consensus 37 ~~~~l~~~~g~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~- 113 (497)
T 2bry_A 37 SFQGLCRALGVE-SGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQ-PVYQQGQACTNTKCLVVGAGPCGLRAAVELAL- 113 (497)
T ss_dssp HHHHHHHHHTCC-TTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTS-GGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCC-CCCCcEeehhhHHHHHHHHHHHhhhhhhhhhcc-ccccCccccCCCCEEEECccHHHHHHHHHHHH-
Confidence 678899999994 66655554332222222111110000 000 000 0001246799999999999999999996
Q ss_pred cccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 182 TEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
.| .+|+++.+++..
T Consensus 114 -------------------~G-~~V~liEk~~~~ 127 (497)
T 2bry_A 114 -------------------LG-ARVVLVEKRIKF 127 (497)
T ss_dssp -------------------TT-CEEEEEESCSSC
T ss_pred -------------------CC-CeEEEEEecccc
Confidence 45 489999987543
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00039 Score=71.14 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=65.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 150 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 217 (565)
T 3ntd_A 150 NVEHATVVGGGFIGLEMMESLHHLG--IKTTLLELADQVM--------TP--VDREMAGFAHQAIRDQGVDLRLGTALSE 217 (565)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEETCCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CcEEEEEcCCccc--------hh--cCHHHHHHHHHHHHHCCCEEEeCCeEEE
Confidence 4579999999999999999999999 9999999877432 21 2235566677778888999988765522
Q ss_pred E---------------------------EEeccc-ccccCEEEEccCC
Q 014990 98 S---------------------------VSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ~---------------------------v~~~~~-~~~~d~lvlAtG~ 117 (415)
- +...++ ...+|.||+|+|.
T Consensus 218 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 265 (565)
T 3ntd_A 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGV 265 (565)
T ss_dssp EEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCE
T ss_pred EeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCC
Confidence 1 222222 2478999999998
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00058 Score=68.51 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=64.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++...+ +. ...++...+.+.+++.+++++.++.+..
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~l---------~~--~d~~~~~~l~~~l~~~Gv~i~~~~~v~~ 252 (483)
T 3dgh_A 186 EPGKTLVVGAGYIGLECAGFLKGLG--YEPTVMVRSIVL---------RG--FDQQMAELVAASMEERGIPFLRKTVPLS 252 (483)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCSS---------TT--SCHHHHHHHHHHHHHTTCCEEETEEEEE
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCCC---------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4678999999999999999999999 999999874211 22 1245666777778888999988866521
Q ss_pred ---------EEEeccc------ccccCEEEEccCC
Q 014990 98 ---------SVSLSEL------RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~~~------~~~~d~lvlAtG~ 117 (415)
.+...+. ...+|.||+|+|.
T Consensus 253 i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~ 287 (483)
T 3dgh_A 253 VEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR 287 (483)
T ss_dssp EEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred EEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence 1332222 2478999999997
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=7.5e-05 Score=76.39 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+||||||+|+++|..|++.| .+|+|||+.+.+
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G--~~V~vlEr~~~~ 61 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQ--VGHLVVEQTDGT 61 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCC
Confidence 468999999999999999999999 999999998654
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00012 Score=74.77 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH---cCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~---~g~~~~v~lie~~~~ 55 (415)
..++|+|||||++|+++|..|++ .| .+|+|||+...
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~~ 42 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQ--ANITLIESAAI 42 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSS--CEEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCC--CEEEEECCCCC
Confidence 46799999999999999999999 88 99999999653
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00045 Score=65.20 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=59.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHh-hccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~ 96 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+.. . ..+.+.+ +..+++++.++.+.
T Consensus 172 ~~~~v~vvG~G~~g~e~a~~l~~~g--~~v~~v~~~~~~~~------------~----~~~~~~l~~~~gv~i~~~~~v~ 233 (338)
T 3itj_A 172 RNKPLAVIGGGDSACEEAQFLTKYG--SKVFMLVRKDHLRA------------S----TIMQKRAEKNEKIEILYNTVAL 233 (338)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCCS------------C----HHHHHHHHHCTTEEEECSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCccCC------------C----HHHHHHHHhcCCeEEeecceeE
Confidence 5688999999999999999999998 99999998775421 1 1222233 34589998876652
Q ss_pred e---------EEEecc------cccccCEEEEccCC
Q 014990 97 S---------SVSLSE------LRQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~---------~v~~~~------~~~~~d~lvlAtG~ 117 (415)
. .+...+ ....+|.||+|+|.
T Consensus 234 ~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 269 (338)
T 3itj_A 234 EAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGH 269 (338)
T ss_dssp EEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred EEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence 2 133333 23479999999997
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00063 Score=68.98 Aligned_cols=87 Identities=17% Similarity=0.133 Sum_probs=62.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++...+ +. ...++...+.+.+++.+++++.+..+..
T Consensus 209 ~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~l---------~~--~d~~~~~~~~~~l~~~GV~v~~~~~v~~ 275 (519)
T 3qfa_A 209 CPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSILL---------RG--FDQDMANKIGEHMEEHGIKFIRQFVPIK 275 (519)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCSS---------TT--SCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEeccccc---------cc--CCHHHHHHHHHHHHHCCCEEEeCCeEEE
Confidence 4567999999999999999999999 999999974211 22 1245666777778888999988754311
Q ss_pred ------------EEEe--ccc----ccccCEEEEccCC
Q 014990 98 ------------SVSL--SEL----RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ------------~v~~--~~~----~~~~d~lvlAtG~ 117 (415)
.+.. .+. ...+|.||+|+|.
T Consensus 276 v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~ 313 (519)
T 3qfa_A 276 VEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR 313 (519)
T ss_dssp EEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCE
T ss_pred EEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCC
Confidence 1111 122 2358999999997
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00067 Score=68.18 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=63.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++...+ +. ...++...+.+.+++.+++++.++.+..
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~l---------~~--~d~~~~~~l~~~l~~~gv~~~~~~~v~~ 250 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTGIG--LDTTVMMRSIPL---------RG--FDQQMSSLVTEHMESHGTQFLKGCVPSH 250 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCSS---------TT--SCHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEcCccc---------cc--CCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4568999999999999999999999 999999875311 22 1245666777788888999988865421
Q ss_pred ---------EEEecc---cc---cccCEEEEccCC
Q 014990 98 ---------SVSLSE---LR---QLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~~---~~---~~~d~lvlAtG~ 117 (415)
.+...+ +. ..+|.||+|+|.
T Consensus 251 i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~ 285 (488)
T 3dgz_A 251 IKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR 285 (488)
T ss_dssp EEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred EEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC
Confidence 122222 22 368999999997
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00013 Score=74.71 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH---cCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~---~g~~~~v~lie~~~~ 55 (415)
..++|||||||+||+++|..|++ .| .+|+|||+.+.
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~~ 62 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGT--ADITLLQAPDI 62 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTS--SEEEEEECCCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCC--CcEEEEeCCCC
Confidence 46799999999999999999999 77 99999998753
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=9.9e-05 Score=73.89 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=36.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~~~ 61 (415)
..++|+|||||++|+++|..|.+.+ . +|+|+|+.+.+||...
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g--~~~v~~~e~~~~~gg~~~ 45 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMH 45 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcC--CCceEEEeCCCCCCCcee
Confidence 4679999999999999999999998 8 8999999999888643
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=74.79 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=37.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...++|+|||||++|+++|..|+++| .+|+|+|+.+..+|..
T Consensus 16 ~~~~DVvVIGgGi~Gl~~A~~La~~G--~~V~LlEk~d~~~GtS 57 (561)
T 3da1_A 16 EKQLDLLVIGGGITGAGIALDAQVRG--IQTGLVEMNDFASGTS 57 (561)
T ss_dssp TSCEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSTTCSGG
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCCcc
Confidence 35789999999999999999999999 9999999997655543
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00014 Score=73.49 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=33.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+.++|+|||||++|+++|..|+++| .+|+|+|+.+..+
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~G--~~V~llE~~~~~~ 39 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGRG--LSVLMLEAQDLAC 39 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCC--CCEEEEECCCCCC
Confidence 3579999999999999999999999 9999999986433
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00013 Score=74.13 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH------------cCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK------------AHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~------------~g~~~~v~lie~~~~ 55 (415)
..++|+|||||+||+++|..|++ .| .+|+|||+.+.
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G--~~V~liE~~~~ 53 (526)
T 2pyx_A 6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPK--LNITLIESPDV 53 (526)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCS--CEEEEEECSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCC--CeEEEEeCCCC
Confidence 45799999999999999999999 77 99999998754
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=72.94 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+.+..++|+|||+|.+|+++|..|++.| .+|+++|+++..||..
T Consensus 16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g--~~v~~~e~~~~~Gg~~ 59 (475)
T 3p1w_A 16 FQGEHYDVIILGTGLKECILSGLLSHYG--KKILVLDRNPYYGGET 59 (475)
T ss_dssp -CCCEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGG
T ss_pred cccccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeccCCCCCCc
Confidence 3446789999999999999999999999 9999999999988864
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=76.49 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~v~lie~~~~ 55 (415)
..++|+||||||+|+++|..|++ .| .+|+|||+.+.
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G--~~V~viEr~~~ 67 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPD--IRTCIVEQKEG 67 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTT--SCEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCC--CCEEEEeCCCC
Confidence 35689999999999999999999 89 99999999864
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00026 Score=71.72 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=36.5
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.|+++++++.++++. . +++.+.++++... +|+..++.+|.||.|+|...
T Consensus 123 ~~Gv~i~~~~~V~~v~--~-~~~~v~gv~~~~~--------------dG~~~~i~ad~VI~AdG~~S 172 (512)
T 3e1t_A 123 RKGVDVRERHEVIDVL--F-EGERAVGVRYRNT--------------EGVELMAHARFIVDASGNRT 172 (512)
T ss_dssp HTTCEEESSCEEEEEE--E-ETTEEEEEEEECS--------------SSCEEEEEEEEEEECCCTTC
T ss_pred hCCCEEEcCCEEEEEE--E-ECCEEEEEEEEeC--------------CCCEEEEEcCEEEECCCcch
Confidence 4579999999998887 4 4555655655421 35545899999999999864
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00014 Score=77.26 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=37.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+..++|+|||||++|+++|..|++.| .+|+|+|+.+.+||
T Consensus 334 ~~~~~v~viG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~gg 373 (776)
T 4gut_A 334 YHNKSVIIIGAGPAGLAAARQLHNFG--IKVTVLEAKDRIGG 373 (776)
T ss_dssp GTSCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--CcEEEEecccceec
Confidence 34689999999999999999999999 99999999988887
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0002 Score=69.40 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||+||+.+|..|++.| .+|+|||+.+.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G--~~V~liE~~~~ 35 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLG--VPVRLFEMRPK 35 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTT
T ss_pred CCEEEECchHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 68999999999999999999999 99999998763
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=73.97 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHHHH---cCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLK---AHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~---~g~~~~v~lie~~~~ 55 (415)
++|||||||++|+++|..|++ .| .+|+|||+.+.
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G--~~V~lvE~~~~ 39 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDR--IDVTLVESGNV 39 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGG--SEEEEEEC---
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCC--CEEEEEecCCC
Confidence 689999999999999999999 88 99999998753
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00086 Score=64.26 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=61.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+.. . ......+.+..++.+++++.++.+..
T Consensus 162 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~~--------~----~~~~~~l~~~~~~~gv~i~~~~~v~~ 227 (360)
T 3ab1_A 162 KGKRVVIVGGGDSALDWTVGLIKNA--ASVTLVHRGHEFQG--------H----GKTAHEVERARANGTIDVYLETEVAS 227 (360)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTS--SEEEEECSSSSCSS--------C----SHHHHSSHHHHHHTSEEEESSEEEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcC--CEEEEEEcCCCCCC--------C----HHHHHHHHHHhhcCceEEEcCcCHHH
Confidence 4678999999999999999999998 99999998765321 1 12334445555666888888765421
Q ss_pred ---------EEEec--cc---ccccCEEEEccCC
Q 014990 98 ---------SVSLS--EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~--~~---~~~~d~lvlAtG~ 117 (415)
.+... ++ ...+|.||+|+|.
T Consensus 228 i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~ 261 (360)
T 3ab1_A 228 IEESNGVLTRVHLRSSDGSKWTVEADRLLILIGF 261 (360)
T ss_dssp EEEETTEEEEEEEEETTCCEEEEECSEEEECCCB
T ss_pred hccCCCceEEEEEEecCCCeEEEeCCEEEECCCC
Confidence 23332 32 3479999999997
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00058 Score=67.93 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|+|||||..|+.+|..|++..+..+|+++++.+.+
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~ 264 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL 264 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence 478999999999999999999999434999999988753
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0018 Score=60.97 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ..+ ..++.+..+++++.++.+..
T Consensus 151 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~----~~~---~~~l~~~~gv~i~~~~~v~~ 213 (325)
T 2q7v_A 151 KGKKVVVIGGGDAAVEEGMFLTKFA--DEVTVIHRRDTLR--------AN----KVA---QARAFANPKMKFIWDTAVEE 213 (325)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTTTC--SEEEEECSSSSCC--------SC----HHH---HHHHHTCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeCCCcCC--------cc----hHH---HHHHHhcCCceEecCCceEE
Confidence 4589999999999999999999998 9999999876531 11 112 12333446898887765521
Q ss_pred --------EEEec---cc---ccccCEEEEccCC
Q 014990 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~---~~---~~~~d~lvlAtG~ 117 (415)
.+... ++ ...+|.||+|+|.
T Consensus 214 i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 247 (325)
T 2q7v_A 214 IQGADSVSGVKLRNLKTGEVSELATDGVFIFIGH 247 (325)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EccCCcEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence 13332 22 3479999999997
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=74.32 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|||||||+||+++|..|++.| .+|+|+|+.+..
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G--~~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCC
Confidence 568999999999999999999999 999999998643
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00021 Score=72.94 Aligned_cols=38 Identities=29% Similarity=0.435 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|||||||+||+++|..|++ | .+|+|+|+.+..++
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~~g 44 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTEG 44 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTTC-
T ss_pred CCCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCCCC
Confidence 45799999999999999999999 8 99999999876543
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0017 Score=60.59 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=57.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhc-cCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~ 96 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. .. . .+.+.+.. .+++++.++.+.
T Consensus 143 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~----~----~~~~~l~~~~gv~v~~~~~v~ 204 (310)
T 1fl2_A 143 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK--------AD----Q----VLQDKLRSLKNVDIILNAQTT 204 (310)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTB--SEEEEECSSSSCC--------SC----H----HHHHHHHTCTTEEEESSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CEEEEEEeCcccC--------cc----H----HHHHHHhhCCCeEEecCCceE
Confidence 4679999999999999999999998 9999999887541 01 1 22233444 588888776552
Q ss_pred e---------EEEecc---c---ccccCEEEEccCC
Q 014990 97 S---------SVSLSE---L---RQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~---------~v~~~~---~---~~~~d~lvlAtG~ 117 (415)
. .+...+ + ...+|.||+|+|.
T Consensus 205 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 240 (310)
T 1fl2_A 205 EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 240 (310)
T ss_dssp EEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence 1 122221 2 2468999999997
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0019 Score=60.96 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=59.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. .. ..+ ..++++..+++++.++.+..
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~~--------~~----~~~---~~~~~~~~gv~i~~~~~v~~ 220 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDAFR--------AS----KIM---QQRALSNPKIDVIWNSSVVE 220 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS--SEEEEECSSSSCC--------SC----HHH---HHHHHTCTTEEEECSEEEEE
T ss_pred CCCeEEEECCChHHHHHHHHHHhcC--CeEEEEecCCcCC--------cc----HHH---HHHHHhCCCeeEecCCceEE
Confidence 5689999999999999999999998 9999999887541 11 111 12344667899887765521
Q ss_pred -----------EEEecc------cccccCEEEEccCC
Q 014990 98 -----------SVSLSE------LRQLYHVVVLAYGA 117 (415)
Q Consensus 98 -----------~v~~~~------~~~~~d~lvlAtG~ 117 (415)
.+.... ....+|.||+|+|.
T Consensus 221 i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 257 (333)
T 1vdc_A 221 AYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH 257 (333)
T ss_dssp EEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence 133321 23479999999998
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=60.15 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=60.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. .. .+ ...+.++..+++++.++.+..
T Consensus 146 ~~~~v~viG~g~~~~e~a~~l~~~g--~~v~~~~~~~~~~--------~~----~~---~~~~~~~~~gv~~~~~~~v~~ 208 (315)
T 3r9u_A 146 KNKEVAVLGGGDTALEEALYLANIC--SKIYLIHRRDEFR--------AA----PS---TVEKVKKNEKIELITSASVDE 208 (315)
T ss_dssp TTSEEEEECCBHHHHHHHHHHHTTS--SEEEEECSSSSCB--------SC----HH---HHHHHHHCTTEEEECSCEEEE
T ss_pred CcCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEeCCCCC--------CC----HH---HHHHHHhcCCeEEEeCcEEEE
Confidence 4689999999999999999999998 9999999877541 11 12 223344577899988776522
Q ss_pred ---------EEEec--cc---ccccCEEEEccCC
Q 014990 98 ---------SVSLS--EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~--~~---~~~~d~lvlAtG~ 117 (415)
.+... ++ ...+|.||+|+|.
T Consensus 209 i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~ 242 (315)
T 3r9u_A 209 VYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL 242 (315)
T ss_dssp EEEETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred EEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence 12232 33 3479999999997
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=66.22 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=63.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC------------CCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g------------~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (415)
.+++|||||+.|+.+|..|++.. .+.+|+|+|..+.+. |.+ ..++.....+.+++.|+
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il--------~~~--~~~~~~~~~~~L~~~GV 287 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL--------NMF--EKKLSSYAQSHLENTSI 287 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHTTC
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc--------cCC--CHHHHHHHHHHHHhcce
Confidence 57999999999999999887532 126899999887642 322 24566777888888999
Q ss_pred EEEeceEece----EE----Eeccc-----ccccCEEEEccCC
Q 014990 88 SFFGNVTLGS----SV----SLSEL-----RQLYHVVVLAYGA 117 (415)
Q Consensus 88 ~~~~~~~v~~----~v----~~~~~-----~~~~d~lvlAtG~ 117 (415)
+++.++.+.. .+ ...++ ...+|.||.|+|.
T Consensus 288 ~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 288 KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp EEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred eeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCC
Confidence 9999887632 11 11222 2479999999997
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00031 Score=72.18 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=35.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|+|||||.+|+++|..|+++| .+|+|+|+.+..+|
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG--~~V~LlE~~~~~~G 69 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASG--IKTGLIEMQDFAEG 69 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 4689999999999999999999999 99999999875444
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=73.61 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=33.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|||||||+||+++|..|++.|++.+|+|||+.+.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~ 41 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 4789999999999999999999886689999999754
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=70.97 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||++|+++|..|+++|+ .+|+|||+...
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~-~~V~vlE~~~~ 58 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSG-GSVLVVDAGHA 58 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHC-SCEEEEESSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEccCCC
Confidence 45799999999999999999999873 69999999433
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0023 Score=59.74 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=58.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. .. ..+. ..+.+..+++++.+..+..
T Consensus 142 ~~~~v~VvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~----~~~~---~~l~~~~gv~v~~~~~v~~ 204 (311)
T 2q0l_A 142 KNKEVAVLGGGDTAVEEAIYLANIC--KKVYLIHRRDGFR--------CA----PITL---EHAKNNDKIEFLTPYVVEE 204 (311)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHTTS--SEEEEECSSSSCC--------SC----HHHH---HHHHTCTTEEEETTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeeCCccC--------CC----HHHH---HHHhhCCCeEEEeCCEEEE
Confidence 4689999999999999999999998 9999999876541 01 1122 2223346888887765421
Q ss_pred ---------EEEec---cc---ccccCEEEEccCC
Q 014990 98 ---------SVSLS---EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~---~~---~~~~d~lvlAtG~ 117 (415)
.+... ++ ...+|.||+|+|.
T Consensus 205 i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 239 (311)
T 2q0l_A 205 IKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGY 239 (311)
T ss_dssp EEEETTEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred EECCCCcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence 13332 22 2479999999997
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=74.06 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|||||||+||++||..|++.| .+|+|+|+...
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G--~~V~vlEK~~~ 52 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAG--FNTACVTKLFP 52 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCG
T ss_pred ccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 4579999999999999999999999 99999999854
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00026 Score=74.11 Aligned_cols=35 Identities=37% Similarity=0.533 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHH-----cCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLK-----AHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~-----~g~~~~v~lie~~~~ 55 (415)
.++|+||||||+|+++|..|++ .| ++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~G--i~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCC--CCEEEEeCCCC
Confidence 5789999999999999999999 88 99999998743
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0014 Score=62.04 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=58.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. .. +.+. .+++++.+++++.+..+..
T Consensus 154 ~~~~v~ViG~G~~g~e~a~~l~~~g--~~V~l~~~~~~~~--------~~----~~~~---~~~~~~~gV~v~~~~~v~~ 216 (335)
T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTRFA--RSVTLVHRRDEFR--------AS----KIML---DRARNNDKIRFLTNHTVVA 216 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTTC--SEEEEECSSSSCS--------SC----TTHH---HHHHHCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CeEEEEEcCCcCC--------cc----HHHH---HHHhccCCcEEEeCceeEE
Confidence 4689999999999999999999998 9999999876541 11 1111 1234567899888766521
Q ss_pred --------EEEec---cc---ccccCEEEEccCC
Q 014990 98 --------SVSLS---EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~---~~---~~~~d~lvlAtG~ 117 (415)
.+... ++ ...+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (335)
T 2a87_A 217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGH 250 (335)
T ss_dssp EECSSSCCEEEEEEETTSCCEEECCSCEEECSCE
T ss_pred EecCCcEeEEEEEEcCCCceEEeecCEEEEccCC
Confidence 13332 12 3479999999998
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0022 Score=66.06 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=60.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.. + .+. ...+....+.+.+++.+++++.+..+..
T Consensus 285 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~-~--------l~~--~d~~~~~~~~~~l~~~gv~i~~~~~v~~ 351 (598)
T 2x8g_A 285 FPGKTLVIGASYVALECAGFLASLG--GDVTVMVRSI-L--------LRG--FDQQMAEKVGDYMENHGVKFAKLCVPDE 351 (598)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-S--------STT--SCHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEECCc-C--------cCc--CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 4568999999999999999999999 8999999762 1 122 1234455666677778999887753211
Q ss_pred ---------------E--EE--ecccc-c--ccCEEEEccCC
Q 014990 98 ---------------S--VS--LSELR-Q--LYHVVVLAYGA 117 (415)
Q Consensus 98 ---------------~--v~--~~~~~-~--~~d~lvlAtG~ 117 (415)
. +. ..++. . .+|.||+|+|.
T Consensus 352 v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~ 393 (598)
T 2x8g_A 352 IKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR 393 (598)
T ss_dssp EEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCE
T ss_pred EEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCC
Confidence 1 11 11222 2 38999999998
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00028 Score=73.61 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|||||||.||+++|..|++.| .+|+|+|+.+..
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G--~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 568999999999999999999999 999999998643
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0026 Score=59.35 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=60.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+.. . .+ ...++.+..+++++.++.+..
T Consensus 153 ~~~~v~vvG~G~~~~e~a~~l~~~g--~~v~~~~~~~~~~~--------~----~~---~~~~~~~~~gv~~~~~~~v~~ 215 (323)
T 3f8d_A 153 KNRVVAVIGGGDSALEGAEILSSYS--TKVYLIHRRDTFKA--------Q----PI---YVETVKKKPNVEFVLNSVVKE 215 (323)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHS--SEEEEECSSSSCCS--------C----HH---HHHHHHTCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC--CeEEEEEeCCCCCc--------C----HH---HHHHHHhCCCcEEEeCCEEEE
Confidence 5689999999999999999999998 99999998765421 1 11 223344556899988875521
Q ss_pred --------EEEecc---c---ccccCEEEEccCC
Q 014990 98 --------SVSLSE---L---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~---~---~~~~d~lvlAtG~ 117 (415)
.+...+ + ...+|.||+|+|.
T Consensus 216 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 249 (323)
T 3f8d_A 216 IKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGF 249 (323)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred EeccCceeEEEEEECCCCceEEEEcCEEEEEECC
Confidence 133332 3 3479999999998
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0021 Score=64.14 Aligned_cols=86 Identities=22% Similarity=0.241 Sum_probs=58.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +.. ...++...+.+.++ ++++.++.+..
T Consensus 171 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~d~~~~~~l~~~l~---v~i~~~~~v~~ 236 (466)
T 3l8k_A 171 LPQDMVIIGAGYIGLEIASIFRLMG--VQTHIIEMLDRAL--------ITL-EDQDIVNTLLSILK---LNIKFNSPVTE 236 (466)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TTS-CCHHHHHHHHHHHC---CCEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEeCCcCC--------CCC-CCHHHHHHHHhcCE---EEEEECCEEEE
Confidence 4689999999999999999999999 9999999877542 211 02344444444444 66655543311
Q ss_pred ---------EEEec--cc---ccccCEEEEccCC
Q 014990 98 ---------SVSLS--EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~--~~---~~~~d~lvlAtG~ 117 (415)
.+... ++ ...+|.||+|+|.
T Consensus 237 i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~ 270 (466)
T 3l8k_A 237 VKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGR 270 (466)
T ss_dssp EEEEETTEEEEEECCTTSCCEEEEESCEEECCCE
T ss_pred EEEcCCCcEEEEEEecCCceEEEEcCEEEECcCC
Confidence 13333 22 3478999999998
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.002 Score=60.45 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=57.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. .. .. +.+.+...+++++.++.+..
T Consensus 154 ~~~~v~viG~G~~g~e~a~~l~~~g--~~V~~i~~~~~~~--------~~----~~----l~~~l~~~gv~i~~~~~v~~ 215 (319)
T 3cty_A 154 KGKRVVTIGGGNSGAIAAISMSEYV--KNVTIIEYMPKYM--------CE----NA----YVQEIKKRNIPYIMNAQVTE 215 (319)
T ss_dssp BTSEEEEECCSHHHHHHHHHHTTTB--SEEEEECSSSSCC--------SC----HH----HHHHHHHTTCCEECSEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhC--CcEEEEEcCCccC--------CC----HH----HHHHHhcCCcEEEcCCeEEE
Confidence 4578999999999999999999998 9999999876531 11 12 22233456888877765421
Q ss_pred ---------EEEec---cc---ccccCEEEEccCC
Q 014990 98 ---------SVSLS---EL---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~---~~---~~~~d~lvlAtG~ 117 (415)
.+... ++ ...+|.||+|+|.
T Consensus 216 i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 250 (319)
T 3cty_A 216 IVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGL 250 (319)
T ss_dssp EEESSSSEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred EecCCceEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence 12222 22 2479999999997
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0018 Score=64.13 Aligned_cols=37 Identities=11% Similarity=-0.134 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~~ 56 (415)
..++|+|||+|+.|+.+|..|++.+ .+ |+++++.+..
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~~~--~~~V~l~~r~~~~ 248 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLGGGD 248 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTTCCS
T ss_pred CCCEEEEEccCcCHHHHHHHHHHHh--CCcEEEEeCCCCc
Confidence 5688999999999999999999998 88 9999987654
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0011 Score=64.55 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.6
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|+|||+|+.|+.+|..|.+ .....+|+++.+++..
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~-------------------~~~~~~Vtlie~~~~~ 39 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKL-------------------ADPSIEVTLIEPNETY 39 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-------------------HCTTSEEEEECSCSSE
T ss_pred cCEEEEECCcHHHHHHHHHHHh-------------------cCcCCeEEEEeCCCCC
Confidence 7999999999999999999875 1122489999887643
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0005 Score=71.72 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=32.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc------CCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKA------HQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~------g~~~~v~lie~~~~ 55 (415)
.++|||||||.||++||..|++. | .+|+|+|+...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG--~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPE--AKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTT--CCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCC--CcEEEEEecCC
Confidence 57999999999999999999997 7 99999999753
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=67.77 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=35.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.|+.+++++.++++. . +++.+..|++.+ .|+..++.+|.||.|+|...
T Consensus 140 ~~Gv~i~~g~~V~~v~--~-~~g~~~~V~~~~---------------~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 140 SRGITVHEETPVTDVD--L-SDPDRVVLTVRR---------------GGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp HTTCEEETTCCEEEEE--C-CSTTCEEEEEEE---------------TTEEEEEEESEEEECCGGGC
T ss_pred hCCCEEEeCCEEEEEE--E-cCCCEEEEEEec---------------CCceEEEEcCEEEECCCCcc
Confidence 4589999999998886 4 345555665542 34445899999999999765
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0021 Score=67.55 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=64.5
Q ss_pred CCCCeEEEEC--CCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 17 SNPLRVCVVG--SGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 17 ~~~~~VvIIG--gG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
+..++|+||| +|+.|+.+|..|.+.+ .+|+++++.+.+..... .......+.+.+++.+++++.++.
T Consensus 521 ~~g~~VvViG~ggG~~g~e~A~~L~~~g--~~Vtlv~~~~~l~~~~~---------~~~~~~~l~~~l~~~GV~i~~~~~ 589 (690)
T 3k30_A 521 PDGKKVVVYDDDHYYLGGVVAELLAQKG--YEVSIVTPGAQVSSWTN---------NTFEVNRIQRRLIENGVARVTDHA 589 (690)
T ss_dssp CSSSEEEEEECSCSSHHHHHHHHHHHTT--CEEEEEESSSSTTGGGG---------GGTCHHHHHHHHHHTTCEEEESEE
T ss_pred CCCCEEEEEcCCCCccHHHHHHHHHhCC--CeeEEEecccccccccc---------cchhHHHHHHHHHHCCCEEEcCcE
Confidence 4567899999 9999999999999999 99999998876433221 111234556667778999999877
Q ss_pred ece----EEEec-----cc-ccccCEEEEccCC
Q 014990 95 LGS----SVSLS-----EL-RQLYHVVVLAYGA 117 (415)
Q Consensus 95 v~~----~v~~~-----~~-~~~~d~lvlAtG~ 117 (415)
+.. .+... +. ...+|.||+|+|.
T Consensus 590 V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~ 622 (690)
T 3k30_A 590 VVAVGAGGVTVRDTYASIERELECDAVVMVTAR 622 (690)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECSEEEEESCE
T ss_pred EEEEECCeEEEEEccCCeEEEEECCEEEECCCC
Confidence 632 11111 12 3479999999998
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00056 Score=71.25 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHH---H-cCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTL---K-AHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~---~-~g~~~~v~lie~~~~ 55 (415)
..++|||||||+||++||..|+ + .| .+|+|+||.+.
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G--~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTT--CCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCC--CeEEEEeCcCC
Confidence 3579999999999999999999 5 78 99999999864
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0024 Score=59.97 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=58.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+.++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. +. .. ..+.+++.+++++.+..+..
T Consensus 153 ~~~~v~vvG~g~~~~e~a~~l~~~~--~~v~~~~~~~~~~--------~~----~~----~~~~l~~~gv~~~~~~~v~~ 214 (332)
T 3lzw_A 153 AGRRVAILGGGDSAVDWALMLEPIA--KEVSIIHRRDKFR--------AH----EH----SVENLHASKVNVLTPFVPAE 214 (332)
T ss_dssp BTCEEEEECSSHHHHHHHHHHTTTB--SEEEEECSSSSCS--------SC----HH----HHHHHHHSSCEEETTEEEEE
T ss_pred CCCEEEEECCCHhHHHHHHHHHhhC--CeEEEEEecCcCC--------cc----HH----HHHHHhcCCeEEEeCceeeE
Confidence 3678999999999999999999998 8999999876531 11 11 12224567899888766522
Q ss_pred --------EEEecc------cccccCEEEEccCC
Q 014990 98 --------SVSLSE------LRQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~------~~~~~d~lvlAtG~ 117 (415)
.+...+ ....+|.||+|+|.
T Consensus 215 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~ 248 (332)
T 3lzw_A 215 LIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGF 248 (332)
T ss_dssp EECSSSCCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred EecCCceEEEEEEecCCCceEEEECCEEEEeecc
Confidence 133332 12479999999997
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0021 Score=65.42 Aligned_cols=47 Identities=19% Similarity=0.372 Sum_probs=34.5
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSV 347 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~ 347 (415)
+.|+++++++.++++. . +++.+.++++. +| +++.||.||+|+|..+.
T Consensus 232 ~~Gv~I~~~t~V~~I~--~-~~~~v~gV~l~----------------~G--~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 232 ELGGEIRFSTRVDDLH--M-EDGQITGVTLS----------------NG--EEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HTTCEEESSCCEEEEE--E-SSSBEEEEEET----------------TS--CEEECSCEEECCCTTCH
T ss_pred hcCCEEEeCCEEEEEE--E-eCCEEEEEEEC----------------CC--CEEECCEEEECCCCChh
Confidence 4589999999998886 4 34555555442 22 27999999999999884
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0026 Score=63.44 Aligned_cols=37 Identities=22% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+
T Consensus 196 ~~k~VvVVG~G~sg~eiA~~l~~~g--~~V~li~~~~~~ 232 (464)
T 2xve_A 196 KDKTVLLVGSSYSAEDIGSQCYKYG--AKKLISCYRTAP 232 (464)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTT--CSEEEEECSSCC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHhC--CeEEEEEECCCC
Confidence 5789999999999999999999999 999999987654
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0022 Score=61.65 Aligned_cols=137 Identities=17% Similarity=0.241 Sum_probs=76.1
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCC------CHHHHHHHHcCC---
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC------TAKELREILGIK--- 231 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~------~~~~l~~~~~~~--- 231 (415)
.|+|||+|++|+-+|..|++ .| .+|+++.|++.+..+. ....+.+ +..+
T Consensus 6 DViIVGaGpaGl~~A~~La~--------------------~G-~~V~v~Er~~~~~~~~~~g~~l~~~~l~~-l~~~~~~ 63 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAK--------------------YG-LKTLMIEKRPEIGSPVRCGEGLSKGILNE-ADIKADR 63 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSSSTTCSCCSCCEEETHHHHH-TTCCCCT
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CC-CcEEEEeCCCCCCCCCceecccCHHHHHH-cCCCchh
Confidence 59999999999999999997 45 4899999875443221 1222322 2211
Q ss_pred -CeeEEEcccccCCC----------CCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCC
Q 014990 232 -NLYVHIREDDLIKS----------PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER 300 (415)
Q Consensus 232 -~~~~~~~~~~~~~~----------p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~ 300 (415)
.+...+....+... +...........|..+...|...+. +.|+.+++++.++.+. . +
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~---------~~G~~~~~~~~v~~~~--~-~ 131 (397)
T 3oz2_A 64 SFIANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAA---------KAGADVWVKSPALGVI--K-E 131 (397)
T ss_dssp TTEEEEESEEEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHH---------HHTCEEESSCCEEEEE--E-E
T ss_pred hhhhcccceEEEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHH---------hcCcEEeeeeeeeeee--e-c
Confidence 22333322211100 0000000001123334444444333 5578889988888776 4 3
Q ss_pred CCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 301 ~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
++.+..+.... +++..++.+|+||-|.|...
T Consensus 132 ~~~~~~v~~~~---------------~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 132 NGKVAGAKIRH---------------NNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp TTEEEEEEEEE---------------TTEEEEEEEEEEEECCCTTC
T ss_pred cceeeeeeecc---------------cccceEEEEeEEEeCCcccc
Confidence 55554444322 45566899999999999653
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0018 Score=59.79 Aligned_cols=79 Identities=8% Similarity=-0.034 Sum_probs=56.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ +|+++++.+. .. ...+.+.+++.+++++. ..+..
T Consensus 140 ~~~~v~vvG~G~~~~e~a~~l~~~g---~v~~v~~~~~-------~~----------~~~~~~~l~~~gv~i~~-~~v~~ 198 (297)
T 3fbs_A 140 DQGKIGVIAASPMAIHHALMLPDWG---ETTFFTNGIV-------EP----------DADQHALLAARGVRVET-TRIRE 198 (297)
T ss_dssp TTCEEEEECCSTTHHHHHHHGGGTS---EEEEECTTTC-------CC----------CHHHHHHHHHTTCEEEC-SCEEE
T ss_pred cCCEEEEEecCccHHHHHHHhhhcC---cEEEEECCCC-------CC----------CHHHHHHHHHCCcEEEc-ceeee
Confidence 4689999999999999999999984 9999987654 00 12234456667888874 33311
Q ss_pred -----EEEecccc-cccCEEEEccCC
Q 014990 98 -----SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 98 -----~v~~~~~~-~~~d~lvlAtG~ 117 (415)
.+...++. ..+|.||+|+|.
T Consensus 199 i~~~~~v~~~~g~~~~~D~vi~a~G~ 224 (297)
T 3fbs_A 199 IAGHADVVLADGRSIALAGLFTQPKL 224 (297)
T ss_dssp EETTEEEEETTSCEEEESEEEECCEE
T ss_pred eecCCeEEeCCCCEEEEEEEEEccCc
Confidence 34444443 479999999998
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.002 Score=63.53 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=29.7
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
|+|+|||+|+.|+.+|..|.+ .....+|+++.+++.
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~-------------------~~~~~~VtlI~~~~~ 38 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRN-------------------LMPDLKITLISDRPY 38 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHH-------------------HCTTCEEEEECSSSE
T ss_pred CcEEEECCCHHHHHHHHHHhc-------------------cCcCCeEEEEcCCCC
Confidence 789999999999999999985 123358999998864
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0035 Score=58.43 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|+|||||+.|+.+|..|++.+ .+|+|+++.+.
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~~G--~~Vt~v~~~~~ 186 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTKYG--SKVIILHRRDA 186 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHhC--Ceeeeeccccc
Confidence 5689999999999999999999999 99999997543
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00061 Score=71.30 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=34.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC------CceEEEEcCCC-CC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ------EAQVDIIDRLP-TP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~------~~~v~lie~~~-~~ 56 (415)
..++|+|||||++|+++|..|.+.+. .++|+|+|+.+ .+
T Consensus 55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 35789999999999999999998762 27999999998 88
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0049 Score=62.74 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|+|||+|..|+.+|..|++.+ .+|++|++.+.
T Consensus 176 ~~~krV~VIG~G~sgve~a~~l~~~~--~~Vtv~~r~~~ 212 (540)
T 3gwf_A 176 LAGRRVGVIGTGSTGQQVITSLAPEV--EHLTVFVRTPQ 212 (540)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHTTTC--SEEEEEESSCC
T ss_pred cccceEEEECCCchHHHHHHHHHhhC--CEEEEEECCCC
Confidence 45789999999999999999999998 99999999865
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0036 Score=61.59 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|.+|+.+|..|++ .| .+|+++.+.+.
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~--------------------~G-~~V~llEk~~~ 61 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGK--------------------RG-RRVLVIDHARA 61 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--------------------CC-CcEEEEeCCCC
Confidence 45689999999999999999986 34 47899988753
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.002 Score=62.99 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=28.8
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
++|+|||+|.+|+.+|..|.+. .....+|+++.+++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~------------------~~~g~~V~vie~~~~ 38 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRL------------------VGSKADVKVINKSRF 38 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH------------------HGGGSEEEEEESSSE
T ss_pred CeEEEECCCHHHHHHHHHHHhh------------------CCCCCeEEEEeCCCC
Confidence 5799999999999999998740 002258999998864
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0011 Score=67.59 Aligned_cols=37 Identities=27% Similarity=0.517 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+++||||+|++|+.+|.+|.+.+ .+|+|+|++..
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~~g--~~VlvlE~g~~ 41 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSEAG--KKVLLLERGGP 41 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCC
T ss_pred CCceeEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence 35689999999999999999999998 99999999864
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0071 Score=61.22 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=58.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhc-cCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~ 96 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. +. ..+.+.+.. .+++++.++.+.
T Consensus 354 ~~k~V~ViGgG~~g~E~A~~L~~~g--~~Vtlv~~~~~l~--------~~--------~~l~~~l~~~~gV~v~~~~~v~ 415 (521)
T 1hyu_A 354 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK--------AD--------QVLQDKVRSLKNVDIILNAQTT 415 (521)
T ss_dssp BTSEEEEECCSHHHHHHHHHHHHHB--SEEEEECSSSSCC--------SC--------HHHHHHHTTCTTEEEECSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhC--CEEEEEEeCcccC--------cC--------HHHHHHHhcCCCcEEEeCCEEE
Confidence 4679999999999999999999998 9999999876532 11 123334444 588888876552
Q ss_pred e---------EEEecc---c---ccccCEEEEccCC
Q 014990 97 S---------SVSLSE---L---RQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~---------~v~~~~---~---~~~~d~lvlAtG~ 117 (415)
. .+...+ + ...+|.||+|+|.
T Consensus 416 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 451 (521)
T 1hyu_A 416 EVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL 451 (521)
T ss_dssp EEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred EEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence 1 122221 2 2468999999997
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0091 Score=58.20 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=28.6
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+|+|||+|.+|+-+|..|++ .| .+|+++.+..
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~--------------------~G-~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNK--------------------SG-FKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHT--------------------TT-CCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEeCCC
Confidence 579999999999999999986 35 4899998874
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.003 Score=62.64 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=75.6
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccC---CC----CHHHHHHHHc-CC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA---AC----TAKELREILG-IK 231 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~---~~----~~~~l~~~~~-~~ 231 (415)
.+|+|||+|.+|+-+|..|++ .| .+|+++.+...... .+ ....+.++-- .+
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~--------------------~G-~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~ 65 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSR--------------------RG-LKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYP 65 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSS--------------------SS-CCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCC
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CC-CCEEEEECCCCCCCCcccccccccHHHHHHhcCCCC
Confidence 579999999999999999986 34 48999998754311 11 1233333210 00
Q ss_pred ---CeeEEEcccccCCCCCcH--Hhh---hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCC
Q 014990 232 ---NLYVHIREDDLIKSPTDE--EEM---KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGH 303 (415)
Q Consensus 232 ---~~~~~~~~~~~~~~p~~~--~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 303 (415)
.....+....+. .|... ... .....+..+.+.|..... +.|+++++++.++++. . +++.
T Consensus 66 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~---------~~gv~i~~~~~v~~i~--~-~~~~ 132 (453)
T 3atr_A 66 KGEELENKINGIKLY-SPDMQTVWTVNGEGFELNAPLYNQRVLKEAQ---------DRGVEIWDLTTAMKPI--F-EDGY 132 (453)
T ss_dssp CGGGEEEEEEEEEEE-CTTSSCEEEEEEEEEEECHHHHHHHHHHHHH---------HTTCEEESSEEEEEEE--E-ETTE
T ss_pred chHHHHhhhcceEEE-CCCCceEEeECCCcEEEcHHHHHHHHHHHHH---------HcCCEEEeCcEEEEEE--E-ECCE
Confidence 011111111110 01000 000 001123334444444432 4578999999888886 4 3555
Q ss_pred eeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 304 VSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 304 v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.++++... .+|+..++.+|.||.|+|..+
T Consensus 133 v~gv~~~~~-------------~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 133 VKGAVLFNR-------------RTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp EEEEEEEET-------------TTTEEEEEECSEEEECCGGGC
T ss_pred EEEEEEEEc-------------CCCceEEEEcCEEEECcCCch
Confidence 555555320 024445799999999999765
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0091 Score=61.14 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=37.3
Q ss_pred ceeEEEEeccccccccccCCCC-CCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~-~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.|+++++++.+++++ . ++ +.+.++.+.+. +|+..++.+|.||+|+|...
T Consensus 267 ~~gv~i~~~~~v~~l~--~-~~~g~v~Gv~~~~~--------------~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 267 KRNIDLRMNTRGIEVL--K-DDKGTVKGILVKGM--------------YKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HTTCEEESSEEEEEEE--E-CTTSCEEEEEEEET--------------TTEEEEEECSEEEECCCCCT
T ss_pred hcCCEEEeCCEeeEeE--E-cCCCeEEEEEEEeC--------------CCcEEEEECCeEEEeCCCcc
Confidence 5589999999999987 4 34 77777766431 34455799999999999754
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0083 Score=59.69 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~ 56 (415)
...++|+|||||..|+-+|..+.+.+ . +|+++++.+..
T Consensus 262 ~~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtiv~r~~~~ 300 (456)
T 2vdc_G 262 AAGKHVVVLGGGDTAMDCVRTAIRQG--ATSVKCLYRRDRK 300 (456)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSCST
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcC--CCEEEEEEeCCcc
Confidence 45789999999999999999999998 6 59999887653
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0081 Score=57.24 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=29.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...|+|||+|.+|+-+|..|++ .....+|.++.+...
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~-------------------~~~G~~V~LiEk~~~ 115 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLST-------------------LRPDLRITIVEAGVA 115 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHH-------------------HCTTSCEEEEESSSS
T ss_pred cCCEEEECccHHHHHHHHHHHh-------------------cCCCCEEEEEeCCCc
Confidence 3579999999999999999986 112357999988753
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.011 Score=60.35 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=33.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||+|+.|+.+|..|++.+ .+|++|++.+.
T Consensus 190 ~~krV~VIG~G~sgve~a~~l~~~~--~~Vtv~~r~~~ 225 (549)
T 4ap3_A 190 TGKRVGVIGTGSSGIQSIPIIAEQA--EQLFVFQRSAN 225 (549)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHB--SEEEEEESSCC
T ss_pred CCCEEEEECCCchHHHHHHHHHhhC--CEEEEEECCCC
Confidence 5789999999999999999999998 99999999875
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=67.41 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..+++||||+|+||+.+|.+|++ + .+|+|+|++...
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g--~~VlvLEaG~~~ 60 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-K--YKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-T--SCEEEECSSBCG
T ss_pred CcccEEEECccHHHHHHHHHHhc-C--CcEEEEecCCCc
Confidence 56899999999999999999999 8 999999998653
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0037 Score=63.68 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=33.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|+|||+|+.|+.+|..|++.+ .+|++|++.+.
T Consensus 183 ~~~krV~VIG~G~tgve~a~~la~~~--~~Vtv~~r~~~ 219 (545)
T 3uox_A 183 FTGKRVGVIGTGATGVQIIPIAAETA--KELYVFQRTPN 219 (545)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHTTTB--SEEEEEESSCC
T ss_pred cCCCeEEEECCCccHHHHHHHHHhhC--CEEEEEEcCCC
Confidence 35789999999999999999999998 99999999875
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.018 Score=58.93 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=37.2
Q ss_pred ceeEEEEeccccccccccCCCC-CCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~-~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.||++++++.+++++ . ++ +.+.+|.+.+. +|+..++.+|.||+|+|..+
T Consensus 267 ~~gv~i~~~t~v~~l~--~-~~~g~v~GV~~~~~--------------~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 267 KRGTDIRLNSRVVRIL--E-DASGKVTGVLVKGE--------------YTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp HTTCEEESSEEEEEEE--E-C--CCEEEEEEEET--------------TTEEEEEECSEEEECCCCCT
T ss_pred HcCCeEEecCEEEEEE--E-CCCCeEEEEEEEeC--------------CCcEEEEEcCEEEEeCCCCc
Confidence 5589999999999986 4 34 67777766431 35555799999999999665
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.003 Score=62.55 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=52.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+.++|+|||.|.+|+++|..|.++| ++|+++|..... +.. ..++ .++++..+...
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~---------~~~-----------~~l~-~G~~~~~g~~~-- 58 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTP---------PGL-----------DKLP-EAVERHTGSLN-- 58 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTT--CCCEEEESSSSC---------TTG-----------GGSC-TTSCEEESSCC--
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCC--CEEEEEECCCCc---------chh-----------HHhh-CCCEEEECCCc--
Confidence 4578999999999999999999999 999999976642 110 2234 56666544311
Q ss_pred EEEecccccccCEEEEccCCCCCCCCCC
Q 014990 98 SVSLSELRQLYHVVVLAYGAESDRALGI 125 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~~~~~~~~i 125 (415)
.+... .+|.||+++|. ++..|.+
T Consensus 59 ---~~~~~-~~d~vV~s~gi-~~~~p~~ 81 (439)
T 2x5o_A 59 ---DEWLM-AADLIVASPGI-ALAHPSL 81 (439)
T ss_dssp ---HHHHH-TCSEEEECTTS-CTTCHHH
T ss_pred ---HHHhc-cCCEEEeCCCC-CCCCHHH
Confidence 11122 68999999997 3333333
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0089 Score=61.15 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=36.9
Q ss_pred ceeEEEEeccccccccccCCCC-CCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~-~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.|+++++++.+++++ . ++ +.+.++.+.+. +|+...+.+|.||+|+|...
T Consensus 262 ~~gv~i~~~~~v~~l~--~-~~~g~v~Gv~~~~~--------------~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 262 EQGIDTRLNSRVVKLV--V-NDDHSVVGAVVHGK--------------HTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp HTTCCEECSEEEEEEE--E-CTTSBEEEEEEEET--------------TTEEEEEEEEEEEECCCCCT
T ss_pred hcCCEEEeCCEEEEEE--E-CCCCcEEEEEEEeC--------------CCcEEEEEcCEEEEecCCcc
Confidence 4579999999999887 4 34 67777766431 34445799999999999654
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0092 Score=57.71 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=28.4
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|.+|+-+|..|.+ .| .+|+++.+...
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHK--------------------AG-IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--------------------HT-CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEeCCCC
Confidence 369999999999999999986 34 47999988753
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0099 Score=58.85 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=28.0
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..|+|||+|.+|+-+|..|++ .+ .+|+++.+.+
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~--------------------~G-~~V~llEk~~ 59 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAE--------------------EG-ANVLLLDKGN 59 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHH--------------------CC-CCEEEEECCC
Confidence 479999999999999999986 34 4788988765
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0047 Score=58.49 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=28.5
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|.+|+-+|..|.+ .....+|+++.+...
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~-------------------~~~g~~V~v~e~~~~ 101 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAK-------------------NRPDLKVCIIESSVA 101 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHH-------------------HCTTSCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHh-------------------cCCCCeEEEEecCcc
Confidence 479999999999999999986 111358999988643
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0088 Score=63.16 Aligned_cols=67 Identities=15% Similarity=0.062 Sum_probs=48.7
Q ss_pred CCCCeEEEEC--CCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 17 SNPLRVCVVG--SGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 17 ~~~~~VvIIG--gG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
...++|+||| ||+.|+.+|..|++.+ .+|+++++.+ +..... . +.. ...+.+.+++.+++++.++.
T Consensus 526 ~~gk~VvVIG~GgG~~g~e~A~~l~~~G--~~Vtlv~~~~-l~~~~~--~-~~~------~~~~~~~l~~~GV~i~~~~~ 593 (729)
T 1o94_A 526 KIGKRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVH-LANYMH--F-TLE------YPNMMRRLHELHVEELGDHF 593 (729)
T ss_dssp CCCSEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSC-TTHHHH--H-TTC------HHHHHHHHHHTTCEEECSEE
T ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHcC--CEEEEEeccc-cccccc--c-ccc------HHHHHHHHHhCCCEEEcCcE
Confidence 3567999999 9999999999999999 8999999877 432111 1 111 23344556677999988876
Q ss_pred e
Q 014990 95 L 95 (415)
Q Consensus 95 v 95 (415)
+
T Consensus 594 v 594 (729)
T 1o94_A 594 C 594 (729)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0024 Score=64.59 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..+|+||||+|+||..+|.+|++.. +.+|+|+|++..
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~~-~~~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSEDP-DSRVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTST-TSCEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhCC-CCeEEEEcCCCC
Confidence 4789999999999999999999732 389999999853
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0071 Score=60.08 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+.++|+|||.|.+|+++|..|.++| ++|++.|..+.. . + ...+.++..++++..+...
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~-------~-~----------~~~~~L~~~gi~~~~g~~~-- 65 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFD-------E-N----------PTAQSLLEEGIKVVCGSHP-- 65 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGG-------G-C----------HHHHHHHHTTCEEEESCCC--
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCccc-------C-C----------hHHHHHHhCCCEEEECCCh--
Confidence 5689999999999999999999999 999999976520 0 0 1123345568877655331
Q ss_pred EEEecccccc-cCEEEEccCC
Q 014990 98 SVSLSELRQL-YHVVVLAYGA 117 (415)
Q Consensus 98 ~v~~~~~~~~-~d~lvlAtG~ 117 (415)
.+.... +|.||+++|.
T Consensus 66 ----~~~~~~~~d~vv~spgi 82 (451)
T 3lk7_A 66 ----LELLDEDFCYMIKNPGI 82 (451)
T ss_dssp ----GGGGGSCEEEEEECTTS
T ss_pred ----HHhhcCCCCEEEECCcC
Confidence 122234 8999999998
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.019 Score=55.65 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=28.7
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|.+|+-+|..|++ .| .+|+++.++..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~--------------------~G-~~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGR--------------------QG-HRVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHh--------------------CC-CcEEEEeCCCC
Confidence 579999999999999999986 34 47999988743
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0037 Score=63.06 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=34.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++++|||+|++|+.+|.+|.+.+ .+|+|+|++...+
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~--~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAG--VQTLMLEMGQLWN 41 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCCC
Confidence 4579999999999999999999988 9999999987543
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0033 Score=64.43 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+++||||||.||+.+|.+|.+.+ ..+|+|+|+++.
T Consensus 4 ~~~yDyIVVGgG~AG~v~A~rLse~~-~~~VLllEaG~~ 41 (577)
T 3q9t_A 4 GSHFDFVIVGGGTAGNTVAGRLAENP-NVTVLIVEAGIG 41 (577)
T ss_dssp TCEEEEEEESCSHHHHHHHHHHTTST-TSCEEEECSSCS
T ss_pred CCcccEEEECCcHHHHHHHHHHHhCC-CCcEEEEecCCC
Confidence 35689999999999999999999875 579999999865
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.015 Score=60.71 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=57.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCC-----------------------------------ceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQE-----------------------------------AQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~-----------------------------------~~v~lie~~~~~gg~~~ 61 (415)
...++|+|||||+.|+.+|..|++.+.. .+|+++++.+...+.
T Consensus 492 ~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~-- 569 (671)
T 1ps9_A 492 PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQ-- 569 (671)
T ss_dssp CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTT--
T ss_pred CCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhcc--
Confidence 3578999999999999999999987611 234444443321100
Q ss_pred cCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece----EEEe-ccc---ccccCEEEEccCC
Q 014990 62 SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS----SVSL-SEL---RQLYHVVVLAYGA 117 (415)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~v~~-~~~---~~~~d~lvlAtG~ 117 (415)
.. .......+.+.++..+++++.++.+.. .+.. .++ ...+|.||+|+|.
T Consensus 570 -~l------~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~ 626 (671)
T 1ps9_A 570 -GL------GKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ 626 (671)
T ss_dssp -TS------CTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred -cc------ccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCc
Confidence 00 111223345566777999988876522 1222 233 3579999999998
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.02 Score=57.50 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=30.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|++|+-+|..|.+ .|. +|+++.|.+.
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~--------------------~G~-~v~vlE~~~~ 45 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRL--------------------AGV-EVVVLERLVE 45 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 56789999999999999999996 454 7999988753
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.026 Score=53.54 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=28.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..+|+|||+|.+|+-+|..|++ .| .+|+++.+..
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~--------------------~G-~~V~vlE~~~ 37 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAA--------------------GG-HEVLVAEAAE 37 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh--------------------CC-CeEEEEeCCC
Confidence 3579999999999999999996 34 4788888864
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.016 Score=55.79 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
...+|+|||+|.+|+.+|..|.+ .| .+|+++.++...
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~--------------------~G-~~v~viE~~~~~ 46 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQ--------------------NG-WDVRLHEKSSEL 46 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEecCCCC
Confidence 35789999999999999999996 34 489999987543
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.006 Score=56.97 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+
T Consensus 144 ~~k~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~ 180 (312)
T 4gcm_A 144 KNKRLFVIGGGDSAVEEGTFLTKFA--DKVTIVHRRDEL 180 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTTTC--SEEEEECSSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEeccccc
Confidence 3579999999999999999999999 999999987653
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0068 Score=66.08 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. + . .+.+++.+++++.++.+..
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G--~~Vtvv~~~~~~~--------~------~-----~~~l~~~GV~v~~~~~v~~i 342 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATG--GVVAVIDARSSIS--------A------A-----AAQAVADGVQVISGSVVVDT 342 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGT--CCSEEEESCSSCC--------H------H-----HHHHHHTTCCEEETEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcC--CcEEEEECCCccc--------h------h-----HHHHHhCCeEEEeCCEeEEE
Confidence 478999999999999999999999 8899999877541 0 1 2345667888887765421
Q ss_pred ---------EEEecc-------c---ccccCEEEEccCC
Q 014990 98 ---------SVSLSE-------L---RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---------~v~~~~-------~---~~~~d~lvlAtG~ 117 (415)
.+...+ + ...+|.||+|+|.
T Consensus 343 ~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~ 381 (965)
T 2gag_A 343 EADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGF 381 (965)
T ss_dssp EECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCE
T ss_pred eccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCc
Confidence 122222 2 3479999999997
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.015 Score=57.40 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=57.2
Q ss_pred CeEEEECCCHHH------HHHH----HHHHHcCC--Cce-EEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccC
Q 014990 20 LRVCVVGSGPAG------FYTA----EKTLKAHQ--EAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (415)
Q Consensus 20 ~~VvIIGgG~AG------l~aA----~~L~~~g~--~~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (415)
.+++|||+|+.| +..| ..+++.+. ..+ |+++++.+.++.... +... +....+.+.+++.+
T Consensus 150 ~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l----~~~~---~~~~~~~~~l~~~g 222 (437)
T 3sx6_A 150 PGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGI----QGVG---DSKGILTKGLKEEG 222 (437)
T ss_dssp CCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTT----TCCT---THHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCcccccccc----Ccch---HHHHHHHHHHHHCC
Confidence 457899997653 5555 66677771 123 999999887654322 2221 23456667778889
Q ss_pred eEEEeceEece----EEEec----------ccccccCEEEEccCC
Q 014990 87 CSFFGNVTLGS----SVSLS----------ELRQLYHVVVLAYGA 117 (415)
Q Consensus 87 ~~~~~~~~v~~----~v~~~----------~~~~~~d~lvlAtG~ 117 (415)
++++.+..+.. .+... .....+|.+++|+|.
T Consensus 223 I~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~ 267 (437)
T 3sx6_A 223 IEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAF 267 (437)
T ss_dssp CEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred CEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence 99998876632 12222 123479999999985
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=58.31 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=29.6
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..+|+|||+|.+|+-+|..|.+ .|. +|+++.|+..
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~--------------------~G~-~v~viEr~~~ 39 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLAR--------------------QGV-RVLVVERRPG 39 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT--------------------TTC-CEEEECSSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 4689999999999999999996 454 7999988753
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0054 Score=61.92 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=33.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++++|||+|++|+.+|.+|.+.+ .+|+|+|++..
T Consensus 9 ~~~~d~~iiG~G~~g~~~a~~l~~~~--~~v~~~e~~~~ 45 (507)
T 1coy_A 9 GDRVPALVIGSGYGGAVAALRLTQAG--IPTQIVEMGRS 45 (507)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCC
Confidence 35689999999999999999999987 99999999864
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0099 Score=56.15 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|||+|+.|+.+|..|++.+ +|+++.+..
T Consensus 162 ~~~~v~VvG~G~~g~e~a~~l~~~~---~v~~v~~~~ 195 (357)
T 4a9w_A 162 AGMRVAIIGGGNSGAQILAEVSTVA---ETTWITQHE 195 (357)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS---EEEEECSSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHhhC---CEEEEECCC
Confidence 4689999999999999999999986 599998773
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.021 Score=55.66 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=28.3
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|++|+.+|..+++ .| .+|+++.+.+.
T Consensus 5 ~dViIIGgG~aGl~aA~~la~--------------------~G-~~V~vlEk~~~ 38 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAK--------------------LG-KSVTVFDNGKK 38 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHh--------------------CC-CCEEEEeCCCC
Confidence 469999999999999999986 34 47889888753
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.024 Score=52.76 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
+.-.|+|||+|+.|+.+|..+++ .+ .+|+++.+..
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar--------------------~g-~~v~lie~~~ 39 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGR--------------------AR-KQIALFDNNT 39 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEECSC
T ss_pred CCcCEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEeCCC
Confidence 34479999999999999988886 34 5799998764
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.011 Score=57.28 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|.+|+.+|..|.+ .| .+|+++.+++.
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 39 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRD--------------------AG-VDVDVYERSPQ 39 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEecCCC
Confidence 35789999999999999999996 35 48999998754
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.04 Score=55.31 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=30.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|++|+-+|..|++ .|. +|+++.|.+.
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~--------------------~G~-~v~vlE~~~~ 46 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRL--------------------GGV-DVMVLEQLPQ 46 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEESCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEECCCC
Confidence 45689999999999999999996 454 7999998743
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.005 Score=63.14 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+++||||||.||+.+|.+|.+. ++.+|+|+|+++
T Consensus 17 ~~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~ 53 (583)
T 3qvp_A 17 GRTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS 53 (583)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred CCCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence 4678999999999999999999875 248999999987
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.013 Score=48.07 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+..-+.+|+|+|+|.-|...|..|.+.| ++|+++|+.
T Consensus 3 ~~~~~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~ 39 (140)
T 3fwz_A 3 AVDICNHALLVGYGRVGSLLGEKLLASD--IPLVVIETS 39 (140)
T ss_dssp CCCCCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECC
Confidence 3445678999999999999999999999 999999964
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.029 Score=61.56 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
..+|+|||||+.|+.+|..+.+.| . +|+++++.+
T Consensus 332 ~~~VvVIGgG~~g~e~A~~~~~~G--~~~Vtvv~r~~ 366 (1025)
T 1gte_A 332 RGAVIVLGAGDTAFDCATSALRCG--ARRVFLVFRKG 366 (1025)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTT--CSEEEEECSSC
T ss_pred CCcEEEECCChHHHHHHHHHHHcC--CCEEEEEEecC
Confidence 559999999999999999999998 7 899999876
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.012 Score=47.65 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=29.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||+|..|..+|..|.+.+ .+|+++|+.
T Consensus 3 ~~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~ 36 (140)
T 1lss_A 3 HGMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDID 36 (140)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence 3578999999999999999999998 999999863
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.036 Score=55.76 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=37.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecC-eeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCG-MVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D-~vi~atG~~p 346 (415)
+.|+++++++.+++++ .++++.+.+|...+ .++..++.+| .||+|+|-..
T Consensus 214 ~~Gv~i~~~t~v~~L~--~~~~g~v~GV~~~~---------------~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 214 KLGVRAEYDMRVQTLV--TDDTGRVVGIVAKQ---------------YGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HTTCEEECSEEEEEEE--ECTTCCEEEEEEEE---------------TTEEEEEEEEEEEEECCCCCT
T ss_pred HcCCEEEecCEeEEEE--ECCCCcEEEEEEEE---------------CCcEEEEEeCCeEEEeCCChh
Confidence 4589999999999987 52257787776643 3445579996 9999999665
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.015 Score=48.49 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...++|+|+|+|.-|..+|..|.+.| .+|+++|+.+
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~ 52 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNE 52 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 35678999999999999999999998 9999999764
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.038 Score=56.49 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=28.3
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..|+|||+|.+|+-+|..|.+ .|. +|+++.|...
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~--------------------~G~-~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRA--------------------GGV-GALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEcCCCC
Confidence 479999999999999999996 454 7999988743
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.037 Score=52.32 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=51.2
Q ss_pred CCCeEEEECCCHHHHH-HHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFY-TAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~-aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
..++|.|||.|.+|++ +|..|.++| ++|++.|..... + ..+.++..++.+..+..
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G--~~V~~~D~~~~~---------~-----------~~~~L~~~gi~v~~g~~-- 58 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAG--FEVSGCDAKMYP---------P-----------MSTQLEALGIDVYEGFD-- 58 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTT--CEEEEEESSCCT---------T-----------HHHHHHHTTCEEEESCC--
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCC--CEEEEEcCCCCc---------H-----------HHHHHHhCCCEEECCCC--
Confidence 4678999999999997 788889999 999999976531 1 11224445777764422
Q ss_pred eEEEecccc-cccCEEEEccCC
Q 014990 97 SSVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 97 ~~v~~~~~~-~~~d~lvlAtG~ 117 (415)
.+... ..+|.||+.+|.
T Consensus 59 ----~~~l~~~~~d~vV~Spgi 76 (326)
T 3eag_A 59 ----AAQLDEFKADVYVIGNVA 76 (326)
T ss_dssp ----GGGGGSCCCSEEEECTTC
T ss_pred ----HHHcCCCCCCEEEECCCc
Confidence 12222 368999999998
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.033 Score=57.18 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=36.2
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.|++++++..+.++. .++++.+.+|.+.+.... .+|..... ...+.++.+|.||.|.|...
T Consensus 156 ~~Gv~i~~g~~v~~l~--~~~~g~V~gV~~~~~g~~--~~G~~~~~-~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 156 ALGVEVYPGYAAAEIL--FHEDGSVKGIATNDVGIQ--KDGAPKTT-FERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp HTTCEEETTCCEEEEE--ECTTSSEEEEEECCEEEC--TTSCEEEE-EECCCEEECSEEEECCCTTC
T ss_pred HcCCEEEcCCEEEEEE--EcCCCCEEEEEeCCcccc--CCCCcccc-cCCceEEECCEEEEeeCCCc
Confidence 4589999999999886 312456666765431110 01110000 00124799999999999764
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0086 Score=60.99 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~ 56 (415)
..++++|||+|++|+.+|.+|.+. + .+|+|+|++...
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~--~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPA--VSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTT--SCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC--CCEEEEecCCcC
Confidence 468999999999999999999997 6 999999998543
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0088 Score=61.49 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~v~lie~~~~ 55 (415)
..++++|||+|++|+.+|.+|.+ .+ .+|+|+|++..
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~--~~v~~~e~g~~ 59 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPK--IKVLVIEKGFY 59 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTT--CCEEEEESSCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCC--CcEEEEecCCc
Confidence 56899999999999999999999 66 99999999854
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.035 Score=53.18 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=28.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..+|+|||+|.+|+-+|..|++ .| .+|+++.+..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~--------------------~G-~~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAK--------------------RG-EEVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeCCC
Confidence 4679999999999999999996 34 3688888763
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.04 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
..+|+|||+|.+|+-+|..|++
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~ 38 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAK 38 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHh
Confidence 3589999999999999999996
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.006 Score=62.39 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.+++||||||.||+.+|.+|.+. ++.+|+|+|+++..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence 47999999999999999999983 24999999998543
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.065 Score=53.23 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHH--------------------HcCCCc-eEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTL--------------------KAHQEA-QVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~--------------------~~g~~~-~v~lie~~~~ 55 (415)
..++|+|||+|+.|+.+|..|+ +.+ . +|+|+++...
T Consensus 144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g--~~~V~lv~r~~~ 200 (460)
T 1cjc_A 144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSR--VKTVWIVGRRGP 200 (460)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCC--CCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCC--CcEEEEEEcCCh
Confidence 4689999999999999999999 455 6 7999998764
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.089 Score=51.09 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..+|+|||+|.+|+-+|..|.+ .|.++|+++.|++.
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~--------------------~G~~~v~v~E~~~~ 39 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQ--------------------AGIGKVTLLESSSE 39 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEESSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHh--------------------CCCCeEEEEECCCC
Confidence 4689999999999999999986 46533999998754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.34 E-value=0.021 Score=47.47 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.+++|+|+|+|..|...|..|.+.+ ++|+++|+.
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRG--QNVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Confidence 4578999999999999999999998 999999964
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.021 Score=46.62 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|+|+|.-|.+.|..|.+.| ++|+++|+.
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKS 38 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECC
Confidence 3568999999999999999999999 999999964
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.027 Score=58.15 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=28.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
.-.|+|||+|..|+++|..+++ .| .+|.++.++
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr--------------------~G-~kVlLIEk~ 60 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAAR--------------------MG-QQTLLLTHN 60 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEESC
T ss_pred cCCEEEECChHHHHHHHHHHHh--------------------CC-CCEEEEeec
Confidence 3579999999999999999996 34 479999886
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.037 Score=55.45 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..+|+|||+|+.|+.+|..|.+ . .+|+++.+.+.
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~--------------------~--~~V~vie~~~~ 141 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQ--------------------Y--LTVALIEERGW 141 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTT--------------------T--CCEEEECTTSS
T ss_pred cCCEEEECccHHHHHHHHHHHh--------------------c--CCEEEEeCCCC
Confidence 4579999999999999999996 3 68999998754
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.094 Score=53.97 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
.-.|+|||+|..|+++|..+++ .| .+|.++.++
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr--------------------~G-~kVlLIEk~ 59 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAAR--------------------MG-AKTAMFVLN 59 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEESC
T ss_pred cCCEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEEec
Confidence 3579999999999999999996 45 479999886
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.099 Score=51.81 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc--------------------CCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA--------------------HQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~--------------------g~~~~v~lie~~~~ 55 (415)
..++|+|||+|+.|+.+|..|.+. + ..+|+|+++...
T Consensus 146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g-~~~V~lv~r~~~ 202 (456)
T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRG-IQEVVIVGRRGP 202 (456)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCC-CCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCC-CcEEEEEecCCh
Confidence 468999999999999999999974 3 249999998764
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.026 Score=52.90 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=33.9
Q ss_pred Cchhhhhhhcc--cccCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 1 MYKARAWLSRS--FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
||.+..++..+ +..+..+.++|.|||.|.-|...|..|++.| ++|+++|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G--~~V~~~dr~~ 54 (310)
T 3doj_A 1 MGSSHHHHHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNG--FKVTVWNRTL 54 (310)
T ss_dssp -----------------CCCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSG
T ss_pred CCCcccccccccccCcccccCCEEEEECccHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence 34555555554 3344556789999999999999999999999 9999999865
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.078 Score=53.76 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=29.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..+|+|||+|.+|+.+|..|.+ .|. +|+++.++..
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~--------------------~G~-~v~iiE~~~~ 50 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRE--------------------LGR-SVHVIETAGD 50 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHh--------------------CCC-CEEEEeCCCC
Confidence 4589999999999999999986 454 8999988753
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.11 Score=52.99 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=37.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.|+.+++++.++++. . +++.+.++++.+. .+|+..++.+|.||.|+|...
T Consensus 182 ~~G~~i~~~~~V~~l~--~-~~g~v~gV~~~d~-------------~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 182 ARGAVALNYMKVESFI--Y-DQGKVVGVVAKDR-------------LTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HTTCEEEESEEEEEEE--E-ETTEEEEEEEEET-------------TTCCEEEEEEEEEEECCGGGH
T ss_pred HcCCEEEcCCEEEEEE--E-cCCeEEEEEEEEc-------------CCCceEEEECCEEEECCCcch
Confidence 5688999998888887 4 4566666766542 145556899999999999765
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.019 Score=57.15 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..|+|+|+|+|--|.+.|..|...+ ++|++||+.+
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~--~~v~vId~d~ 36 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGEN--NDITIVDKDG 36 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTT--EEEEEEESCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence 5689999999999999999999998 9999999764
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.1 Score=50.47 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|.+|+-+|..|.+ .| .+|+++.|++.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 60 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQ--------------------NG-IDVSVYERDND 60 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEeCCCC
Confidence 45789999999999999999996 45 48999998753
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.1 Score=50.60 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=30.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|.+|+-+|..|++ .| .+|+++.|...
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~--------------------~G-~~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQ--------------------SG-IDCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEeCCCC
Confidence 45789999999999999999996 45 47999998754
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.033 Score=57.49 Aligned_cols=43 Identities=19% Similarity=0.120 Sum_probs=39.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+..++|+|||+|..|..+|..|++.| .+|.+||++++.||.+.
T Consensus 6 ~~~~D~~i~GtGl~~~~~a~~~~~~g--~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 6 PSDFDVIVIGTGLPESIIAAACSRSG--QRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred CCcCCEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCCcccCccc
Confidence 35799999999999999999999999 99999999999888654
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.034 Score=49.49 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=50.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
-+.++|+|||||..|...+..|.+.| .+|+|+++... + .+..+.+..++.++...-
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~----------~----------~l~~l~~~~~i~~i~~~~-- 84 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVS----------A----------EINEWEAKGQLRVKRKKV-- 84 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCC----------H----------HHHHHHHTTSCEEECSCC--
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCC----------H----------HHHHHHHcCCcEEEECCC--
Confidence 46889999999999999999999999 99999985310 0 122333444565543211
Q ss_pred eEEEecccccccCEEEEccCC
Q 014990 97 SSVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~ 117 (415)
. ......+|.||.|||.
T Consensus 85 ---~-~~dL~~adLVIaAT~d 101 (223)
T 3dfz_A 85 ---G-EEDLLNVFFIVVATND 101 (223)
T ss_dssp ---C-GGGSSSCSEEEECCCC
T ss_pred ---C-HhHhCCCCEEEECCCC
Confidence 1 1122368999999997
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.055 Score=52.13 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=28.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..+|+|||+|.+|+-+|..|++ ..|..+|+++.+..
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~-------------------~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAK-------------------NHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH-------------------HHCCCCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHH-------------------hcCCCcEEEEeCCC
Confidence 4579999999999999999984 02424788888764
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.049 Score=42.40 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|+|+|..|..++..|.+.| .++|+++++.
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~ 38 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHD 38 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCC
Confidence 3568999999999999999999986 4689999864
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.064 Score=54.48 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=28.8
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|++|+-+|..|.+ .|. +|+++.|.+.
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~--------------------~G~-~V~vlEr~~~ 60 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAH--------------------RQV-GHLVVEQTDG 60 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 479999999999999999996 454 7999988753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.047 Score=46.67 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~ 53 (415)
...+|+|+|+|..|..+|..|.+. | ++|+++|+.
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~ 72 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYG--KISLGIEIR 72 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECC
Confidence 456899999999999999999998 9 999999864
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.036 Score=44.86 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.++|+|+|+|..|..+|..|.+.+ ++|+++|+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 457999999999999999999998 899999865
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.12 Score=55.41 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
..+|+|||+|.+|+-+|..|++
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~ 25 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVT 25 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHh
Confidence 4679999999999999999996
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.058 Score=55.62 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..-.|+|||+|..|+++|..+++ .| .+|.++.++.
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr--------------------~G-~kVlLIEk~~ 54 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVAR--------------------GG-LHCLLITSDL 54 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEESCG
T ss_pred CcCCEEEECccHHHHHHHHHHHH--------------------CC-CcEEEEEecc
Confidence 34589999999999999999996 45 4799998873
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.17 Score=52.65 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=28.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
...|+|||+|.+|+-+|..|++ .| .+|+++.+.
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~--------------------~G-~~V~vlEk~ 304 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLR--------------------RG-WQVTLYCAD 304 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeCC
Confidence 3689999999999999999996 34 478888875
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.039 Score=50.76 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.++|+|||||..|.+.+..|.+.| .+|+||++..
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~G--a~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCC
Confidence 6789999999999999999999999 9999998654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.047 Score=48.19 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=29.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|+|+|+|.-|.+.|..|.+.+ ++|+++|+.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g--~~v~vid~~ 32 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRK--YGVVIINKD 32 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT--CCEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECC
Confidence 57999999999999999999998 999999953
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.13 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.1
Q ss_pred CeEEEEcCChhHHHHHHHHhc
Q 014990 160 DTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~ 180 (415)
++|+|||+|.+|+-+|..|.+
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~ 22 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRR 22 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHS
T ss_pred CcEEEECCcHHHHHHHHHHHh
Confidence 369999999999999999984
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.25 Score=50.77 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=35.1
Q ss_pred cee-EEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 280 QRE-LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 280 ~~~-v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
+.+ ++++++..+++++ . +++.+.++...+. .+|+...+.++.||+|+|..
T Consensus 146 ~~gnv~i~~~~~v~~l~--~-~~g~v~Gv~~~~~-------------~~G~~~~i~A~~VVlAtGg~ 196 (602)
T 1kf6_A 146 QFPQIQRFDEHFVLDIL--V-DDGHVRGLVAMNM-------------MEGTLVQIRANAVVMATGGA 196 (602)
T ss_dssp TCTTEEEEETEEEEEEE--E-ETTEEEEEEEEET-------------TTTEEEEEECSCEEECCCCC
T ss_pred hCCCcEEEeCCEEEEEE--E-eCCEEEEEEEEEc-------------CCCcEEEEEcCeEEECCCCC
Confidence 456 9999999998887 4 3566666654321 14554579999999999953
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.41 Score=48.23 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=28.7
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..+|+|||||.+|+-+|..|++. + ..| .+|+++.+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~----------------~-~~G-~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRA----------------L-QQQ-ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----------------C-CSS-CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhh----------------c-CCC-CEEEEECCCC
Confidence 46899999999999999999840 0 023 4899999864
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.089 Score=47.40 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=32.5
Q ss_pred ccCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 13 ~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.......++|.|||+|.-|.+.|..|++.| ++|+++++.+.
T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G--~~V~~~~r~~~ 53 (245)
T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALADLG--HEVTIGTRDPK 53 (245)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHH
T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCChh
Confidence 333457889999999999999999999999 99999998753
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.094 Score=50.87 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|+|||+|.+|+.+|..+...| .+|+++|+.+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~ 224 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPA 224 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence 4679999999999999999999999 89999997753
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.084 Score=49.47 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc--eEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~--~v~lie~~ 53 (415)
..++|+|||+|..|.+.|..|++.+ . +|+++|+.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g--~~~~V~l~d~~ 41 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRG--IAREIVLEDIA 41 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCC
Confidence 4579999999999999999999998 7 99999865
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.37 Score=48.80 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||||.+|+-+|..|++. + ..+ .+|+++.+..
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~----------------~-~~G-~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKA----------------L-QGT-ADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH----------------T-TTS-SEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhh----------------c-CCC-CcEEEEeCCC
Confidence 357899999999999999999850 0 023 4899998864
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.13 Score=48.73 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
.+++|+|||+|..|.+.|..|+..+ + +|+|+|...
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g--~~~V~L~D~~~ 43 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRE--LADVVLYDVVK 43 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCh
Confidence 4579999999999999999999988 6 899999654
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.065 Score=53.37 Aligned_cols=51 Identities=18% Similarity=0.069 Sum_probs=38.9
Q ss_pred chhhhhhhcccccCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCc-eEEEEcCCCC
Q 014990 2 YKARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKA-HQEA-QVDIIDRLPT 55 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~-~v~lie~~~~ 55 (415)
.++-+.+...+.+. ...++|.|||+|+-|+..|..|++. | + +|+++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~-~~~mkIaVIGlG~mG~~lA~~la~~~G--~~~V~~~D~~~~ 54 (478)
T 3g79_A 2 SLSMSKLEKLLKER-GPIKKIGVLGMGYVGIPAAVLFADAPC--FEKVLGFQRNSK 54 (478)
T ss_dssp --CCCHHHHHHHHH-CSCCEEEEECCSTTHHHHHHHHHHSTT--CCEEEEECCCCT
T ss_pred CccHhHHHHHHhhc-CCCCEEEEECcCHHHHHHHHHHHHhCC--CCeEEEEECChh
Confidence 34444444444442 2557899999999999999999999 8 9 9999998875
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.51 Score=48.27 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=36.4
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
+.|+++++++.+++++ .++++.+.++...+. .+|+...+.++.||+|||..
T Consensus 155 ~~gv~i~~~~~v~~L~--~~~~g~v~Gv~~~~~-------------~~g~~~~i~A~~VVlAtGg~ 205 (588)
T 2wdq_A 155 KNHTTIFSEWYALDLV--KNQDGAVVGCTALCI-------------ETGEVVYFKARATVLATGGA 205 (588)
T ss_dssp HTTCEEEETEEEEEEE--ECTTSCEEEEEEEET-------------TTCCEEEEEEEEEEECCCCC
T ss_pred hCCCEEEeCcEEEEEE--ECCCCEEEEEEEEEc-------------CCCeEEEEEcCEEEECCCCC
Confidence 4579999999999987 412566777765431 14555579999999999964
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.11 Score=50.07 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|..|+.+|..+...| .+|+++|+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 5679999999999999999999999 8999999774
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=92.96 E-value=0.4 Score=49.43 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=37.1
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.+++++++..+++++ . +++.+.++...+. .+|+...+.++.||+|||-..
T Consensus 167 ~~gv~i~~~~~v~~Li--~-~~g~v~Gv~~~~~-------------~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 167 RYDTSYFVEYFALDLL--M-ENGECRGVIALCI-------------EDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp TSCCEEEETEEEEEEE--E-ETTEEEEEEEEET-------------TTCCEEEEEEEEEEECCCCCG
T ss_pred hCCCEEEEceEEEEEE--E-ECCEEEEEEEEEc-------------CCCcEEEEEcCeEEECCCccc
Confidence 5689999999999887 4 4566766665431 145555799999999999543
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.14 Score=47.55 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.|||+|.-|...|..|++.| ++|+++|+.+
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~ 48 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTE 48 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 4568999999999999999999999 9999999764
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.25 Score=49.40 Aligned_cols=71 Identities=20% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCCCeEEEECCCHHHHH-HHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 17 SNPLRVCVVGSGPAGFY-TAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~-aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
...++|.|||.|-+|++ +|..|.++| ++|++.|.... ...+.++..++.+..+..
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~---------------------~~~~~l~~~gi~~~~g~~- 75 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPN---------------------SVTQHLTALGAQIYFHHR- 75 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCC---------------------HHHHHHHHTTCEEESSCC-
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCC--CeEEEEECCCC---------------------HHHHHHHHCCCEEECCCC-
Confidence 45689999999999997 699999999 99999996431 112234556787765421
Q ss_pred ceEEEecccccccCEEEEccCC
Q 014990 96 GSSVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~ 117 (415)
......+|.||+.+|.
T Consensus 76 ------~~~~~~~d~vV~Spgi 91 (494)
T 4hv4_A 76 ------PENVLDASVVVVSTAI 91 (494)
T ss_dssp ------GGGGTTCSEEEECTTS
T ss_pred ------HHHcCCCCEEEECCCC
Confidence 1112368999999998
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.28 Score=48.71 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=29.7
Q ss_pred CceeeccCCCCCcccCCeeeeecccc-CC---ccchh----hhhhhHHHHHhhccc
Q 014990 366 GRVLKNISGDSSQVENGLYVCGWLKR-GP---TGIIA----TNLYCAEETVSSLSL 413 (415)
Q Consensus 366 G~i~v~~~~~~~t~~p~vfaiGD~~~-~~---~~~~~----~a~~~g~~~a~~i~~ 413 (415)
|.|.+|.. ++|+.|||||+|||+. +. +.+.. .++..|+.|+.++..
T Consensus 317 GGI~vd~~--~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~a~ 370 (472)
T 2e5v_A 317 GGIRVNIR--GESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVDS 370 (472)
T ss_dssp CEEECCTT--CBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred CCeEECCC--CccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 44566665 7899999999999975 32 12222 344557777776643
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.14 Score=46.97 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=31.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|.|||+|.-|.+.|..|.+.| ++|+++++.+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~~~ 34 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQ 34 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCC--CCEEEEEcCcc
Confidence 47999999999999999999999 99999998754
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.12 Score=47.86 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.++|.|||+|..|.+.|..|.+.| ++|+++++.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGG--NDVTLIDQW 35 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred CCeEEEECcCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 468999999999999999999998 999999864
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.37 Score=50.00 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=36.1
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
+.|++++++..+++++ . +++.+.++...+. .+|+...+.++.||+|||-.
T Consensus 170 ~~gv~i~~~~~v~~L~--~-~~g~v~Gv~~~~~-------------~~G~~~~i~A~~VVlATGG~ 219 (660)
T 2bs2_A 170 KLGVSIQDRKEAIALI--H-QDGKCYGAVVRDL-------------VTGDIIAYVAKGTLIATGGY 219 (660)
T ss_dssp HHTCEEECSEEEEEEE--E-ETTEEEEEEEEET-------------TTCCEEEEECSEEEECCCCC
T ss_pred hCCCEEEECcEEEEEE--e-cCCEEEEEEEEEC-------------CCCcEEEEEcCEEEEccCcc
Confidence 4579999999998887 4 3566666655321 14555579999999999954
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.15 Score=44.62 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|.|||+|..|.+.|..|.+.+ .+|+++++.+.
T Consensus 17 ~~~~~I~iiG~G~mG~~la~~l~~~g--~~V~~~~~~~~ 53 (209)
T 2raf_A 17 FQGMEITIFGKGNMGQAIGHNFEIAG--HEVTYYGSKDQ 53 (209)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTT--CEEEEECTTCC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHH
Confidence 35778999999999999999999999 99999998765
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.087 Score=46.61 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=29.4
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
+.++.++||++||+..++ ++ ..|+.+|+.||+.|.+.
T Consensus 290 ~~~~~~~v~l~GDa~~g~-gv-~~A~~sG~~aA~~I~~~ 326 (336)
T 3kkj_A 290 LSDADLGIYVCGDWCLSG-RV-EGAWLSGQEAARRLLEH 326 (336)
T ss_dssp EEETTTTEEECCGGGTTS-SH-HHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCEEEEecccCCc-CH-HHHHHHHHHHHHHHHHH
Confidence 445789999999997654 34 47999999999998753
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.13 Score=48.33 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=30.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|+|||+|.-|.+.|..|.+.| .+|+++++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTG--HCVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTT--CEEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 68999999999999999999998 999999864
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.16 Score=46.79 Aligned_cols=34 Identities=26% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|.|||+|.-|...|..|++.| ++|+++|+.+
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G--~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHG--FAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCH
Confidence 468999999999999999999999 9999999764
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.15 Score=50.81 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.|||.|+-|+..|..|++.| ++|+++|+.+
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G--~~V~~~d~~~ 41 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIG--HDVFCLDVDQ 41 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CCceEEEECcCHHHHHHHHHHHhCC--CEEEEEECCH
Confidence 4689999999999999999999999 9999999874
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.074 Score=43.51 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=29.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.++|+|||+|..|...|..|.+.+ .+|+++++.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g--~~v~v~~r~ 53 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQ--YKVTVAGRN 53 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTT--CEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 778999999999999999999987 888888854
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.21 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHhc
Q 014990 158 STDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
...+|+|||||.+|+-+|..|++
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~ 28 (526)
T 2pyx_A 6 PITEIIIVGGGTAGWITAGLLAA 28 (526)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHh
Confidence 35789999999999999999985
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.18 Score=48.66 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|+|+|+|.+|+.++..+...| .+|+++|+.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~ 206 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAA 206 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence 5789999999999999999999999 89999997653
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.17 Score=49.19 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|.+|+.++..+...| .+|+++|+..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~ 205 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRP 205 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCH
Confidence 4678999999999999999999999 8999999764
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.084 Score=46.73 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEE-EcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~l-ie~~~ 54 (415)
+..++|.|||+|.-|.+.|..|.+.+ ++|++ +++++
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g--~~V~~v~~r~~ 57 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQ--IPAIIANSRGP 57 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTT--CCEEEECTTCG
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCCH
Confidence 34679999999999999999999998 89988 67543
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.16 Score=48.09 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.++|+|||+|.-|.+.|..|++.| .+|+++++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g--~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAG--EAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTT--CCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC--CEEEEEECh
Confidence 478999999999999999999999 899999853
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.17 Score=48.45 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+..++|.|||+|.-|.+.|..|++.| ++|+++++.+
T Consensus 27 ~~~mkI~VIGaG~mG~alA~~La~~G--~~V~l~~r~~ 62 (356)
T 3k96_A 27 PFKHPIAILGAGSWGTALALVLARKG--QKVRLWSYES 62 (356)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHTTT--CCEEEECSCH
T ss_pred ccCCeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCH
Confidence 34679999999999999999999999 9999999763
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.21 Score=47.14 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
.+++|+|||+|..|...|..|+..+ + +|+|+|...
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g--~~~V~L~Di~~ 48 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKD--LGDVYMFDIIE 48 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSST
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCH
Confidence 3468999999999999999999998 7 899999654
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=91.79 E-value=0.22 Score=46.69 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
..++|+|||+|..|.+.|..|++.+ + +|+++|+.+
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g--~~~V~l~D~~~ 38 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDN--LADVVLFDIAE 38 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCc
Confidence 3578999999999999999999998 7 899999754
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.2 Score=49.24 Aligned_cols=38 Identities=24% Similarity=0.148 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..+..+|+|||.|+.|+..|..|++.| ++|+.+|-.+.
T Consensus 18 ~~~m~~IaViGlGYVGLp~A~~~A~~G--~~V~g~Did~~ 55 (444)
T 3vtf_A 18 GSHMASLSVLGLGYVGVVHAVGFALLG--HRVVGYDVNPS 55 (444)
T ss_dssp TCCCCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHH
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHhCC--CcEEEEECCHH
Confidence 346779999999999999999999999 99999998743
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=91.72 E-value=0.29 Score=44.27 Aligned_cols=36 Identities=19% Similarity=0.077 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| -.+++|+|...
T Consensus 27 ~~~~VlvvG~GglG~~va~~La~~G-vg~i~lvD~d~ 62 (251)
T 1zud_1 27 LDSQVLIIGLGGLGTPAALYLAGAG-VGTLVLADDDD 62 (251)
T ss_dssp HTCEEEEECCSTTHHHHHHHHHHTT-CSEEEEECCCB
T ss_pred hcCcEEEEccCHHHHHHHHHHHHcC-CCeEEEEeCCC
Confidence 4679999999999999999999999 23899998763
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.19 Score=46.91 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCc--eEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~--~v~lie~~ 53 (415)
++|+|||+|..|.+.|..|+..+ + +|+++|..
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g--~~~eV~L~D~~ 34 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRG--SCSELVLVDRD 34 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCC
Confidence 47999999999999999999998 6 99999965
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.23 Score=49.04 Aligned_cols=37 Identities=19% Similarity=0.081 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..-++|.|||+|.-|...|..|++.| ++|+++|+.+.
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~aG--~~V~l~D~~~e 88 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLAG--IETFLVVRNEQ 88 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECcHH
Confidence 34578999999999999999999999 99999998764
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.21 Score=47.64 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+++|+|+|||..|..++..+++.| ++++++|..+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G--~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAG--MKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 478999999999999999999999 99999998754
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.18 Score=49.87 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|.|||+|.-|+..|..|++.| ++|+++|+.+.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G--~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELG--ANVRCIDTDRN 36 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcC--CEEEEEECCHH
Confidence 68999999999999999999999 99999998743
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.2 Score=47.90 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+..+|+|+|+|.+|..++..|+..| .+|+++|+.+
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~ 200 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINV 200 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 3489999999999999999999999 8999998653
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.19 Score=48.32 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
-..-+|||+|+|.||+.+|..|...| . +|+++|++-
T Consensus 186 l~d~kVVi~GAGaAG~~iA~ll~~~G--a~~I~v~D~~G 222 (398)
T 2a9f_A 186 LDEVSIVVNGGGSAGLSITRKLLAAG--ATKVTVVDKFG 222 (398)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETTE
T ss_pred CCccEEEEECCCHHHHHHHHHHHHcC--CCeEEEEECCC
Confidence 35678999999999999999999999 7 999999873
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.66 E-value=0.2 Score=47.55 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.++|+|||+|..|...|..|.+.| ++|+++++.
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g--~~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 478999999999999999999998 999999864
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.53 Score=44.71 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| -.+++|+|...
T Consensus 35 ~~~~VlivG~GGlG~~ia~~La~~G-vg~itlvD~d~ 70 (346)
T 1y8q_A 35 RASRVLLVGLKGLGAEIAKNLILAG-VKGLTMLDHEQ 70 (346)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECCCB
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEECCC
Confidence 4678999999999999999999999 23899999763
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.18 Score=49.95 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=32.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+.++|+|||||..|.+.+..|.+.| .+|+++++.
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~g--a~V~vi~~~ 44 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALT 44 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCc--CEEEEEcCC
Confidence 5789999999999999999999999 999999985
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.2 Score=45.27 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| . +++|+|+..
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~~G--v~~i~lvD~d~ 65 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLASAG--VGNLTLLDFDT 65 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECCCB
T ss_pred hCCeEEEEeeCHHHHHHHHHHHHcC--CCeEEEEcCCC
Confidence 4678999999999999999999999 6 899999874
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.2 Score=48.04 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=32.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
-...+|||+|+|.||..+|..|...| . +|+++|+.
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G--~~~I~v~Dr~ 225 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLG--VKNVVAVDRK 225 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECC
Confidence 36789999999999999999999998 7 89999986
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.15 Score=47.71 Aligned_cols=32 Identities=28% Similarity=0.538 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|+|||+|.-|.+.|..|.+.| .+|+++++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g--~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSG--EDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTS--CCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEEcC
Confidence 67999999999999999999998 899999864
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.2 Score=44.03 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=29.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...++|.|||+|..|.+.|..|.+.+ ++|+++++.
T Consensus 26 ~~~~~I~iiG~G~~G~~la~~l~~~g--~~V~~~~r~ 60 (215)
T 2vns_A 26 DEAPKVGILGSGDFARSLATRLVGSG--FKVVVGSRN 60 (215)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 35678999999999999999999998 899999864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.23 Score=45.38 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|+|+|+.|...+..|.+.| ++|+++++...
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~~ 37 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQG--HEVTGLRRSAQ 37 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTT--CCEEEEECTTS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcc
Confidence 3578999999999999999999999 99999988753
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.51 Score=48.80 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=28.0
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...|+|||+|++|+-+|..|++ ..|. +|+++.|.+
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~-------------------~~G~-~V~viEr~~ 66 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAA-------------------FPDI-RTCIVEQKE 66 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTT-------------------CTTS-CEEEECSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHH-------------------hCCC-CEEEEeCCC
Confidence 3579999999999999999984 0243 788988874
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.23 Score=46.62 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++++|+|||+|..|.++|..|+..+...+++|+|...
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4578999999999999999999988223899999653
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=91.16 E-value=0.64 Score=44.25 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| -.+++|+|...
T Consensus 117 ~~~~VlvvG~GglGs~va~~La~aG-vg~i~lvD~D~ 152 (353)
T 3h5n_A 117 KNAKVVILGCGGIGNHVSVILATSG-IGEIILIDNDQ 152 (353)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEECCB
T ss_pred hCCeEEEECCCHHHHHHHHHHHhCC-CCeEEEECCCc
Confidence 4778999999999999999999999 34899999763
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.25 Score=45.92 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.|||.|.-|...|..|++.| ++|+++|+.+
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 40 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAG--LSTWGADLNP 40 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEECCH
Confidence 4578999999999999999999999 9999998764
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.23 Score=46.69 Aligned_cols=35 Identities=29% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|.|||+|.-|..-|..++..| ++|+|+|..+
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G--~~V~l~D~~~ 39 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGG--FRVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTT--CCEEEECSCH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 4678999999999999999999999 9999999764
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.22 Score=46.79 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=32.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+..++|.|||.|.-|...|..|++.| ++|+++|+.+
T Consensus 29 ~~~~~I~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 64 (320)
T 4dll_A 29 PYARKITFLGTGSMGLPMARRLCEAG--YALQVWNRTP 64 (320)
T ss_dssp CCCSEEEEECCTTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred cCCCEEEEECccHHHHHHHHHHHhCC--CeEEEEcCCH
Confidence 34679999999999999999999999 9999999764
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=91.01 E-value=0.27 Score=44.92 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|+|+|-+|.++|..|++.| .+|++++|.
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~ 151 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRT 151 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECC
Confidence 5678999999999999999999999 899999865
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.27 Score=47.13 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|+|+|..|..+|..|+..| .+|+++|+.
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~ 198 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMG--AQVTILDVN 198 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECC
Confidence 4689999999999999999999999 899999854
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.3 Score=46.04 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=30.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...++|+|||+|..|.++|..|+..+-..+++++|..
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN 39 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence 3567899999999999999999998821289999853
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.31 Score=44.80 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.4
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|+|+|.|| |+.|-.++..|.++| ++|+++.|++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G--~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARG--HEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence 68999998 999999999999999 99999988754
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.29 Score=45.79 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||+|..|.+.|..|++.+...+|+++|+..
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 47999999999999999999852238999999764
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.33 Score=45.65 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
.++|+|||+|..|...|..|+..+ + +|+|+|...
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g--~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKN--LGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCH
Confidence 468999999999999999999998 6 899999653
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.18 Score=46.71 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||+|.-|.+.|..|.+.| .+|+++++..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g--~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSL--PHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHC--TTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCC--CeEEEEEecc
Confidence 68999999999999999999999 8999999874
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=90.63 E-value=0.31 Score=42.28 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=29.9
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
|+|+|+|| |..|..++..|.+.| ++|++++|.+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~ 34 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNA 34 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCc
Confidence 57999996 999999999999999 9999998753
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.63 E-value=0.32 Score=45.59 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=31.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
++.++|.|||+|..|.+.|..|+..+ + +|+|+|..
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g--~~~v~l~D~~ 41 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKE--LADVVLVDIP 41 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEecc
Confidence 35678999999999999999999998 7 99999965
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=0.22 Score=48.99 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=30.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|.|||+|..|+..|..|++.| ++|+++|+.+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G--~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSS 33 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCH
Confidence 47999999999999999999999 9999999864
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.34 Score=45.62 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=31.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
++.++|+|||+|..|.++|..|+..+ . +++|+|..+
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~--~~~v~L~Di~~ 41 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKE--LGDVVLFDIAE 41 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCC--CCeEEEEeCCc
Confidence 35679999999999999999999998 6 999999654
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.32 Score=45.83 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
+...++|+|||+|..|.++|..|+..+-..+++|+|.
T Consensus 6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~ 42 (326)
T 3vku_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI 42 (326)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 3467899999999999999999999882228999985
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=0.26 Score=46.29 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCCCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 16 SSNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 16 ~~~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..+.++|+|.|| |+-|..++..|++.| ++|+++++....
T Consensus 16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~ 55 (347)
T 4id9_A 16 PRGSHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG 55 (347)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC
Confidence 346789999998 999999999999999 999999987643
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.29 Score=48.01 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|.|||.|+-|+..|..|++ | ++|+++|+.+.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G--~~V~~~D~~~~ 69 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-N--HEVVALDIVQA 69 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-T--SEEEEECSCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-C--CeEEEEecCHH
Confidence 56799999999999999999998 8 99999998753
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.31 Score=46.91 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||+|..|..+|..+...| .+|+++|+.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~ 200 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDIN 200 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 5789999999999999999999999 899999864
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.36 Score=44.15 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++++|||+|-+|-+++..|.+.| .+|+|++|..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQG--LQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 789999999999999999999999 9999998764
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.32 Score=44.73 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=31.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|.|||.|..|...|..|++.| ++|+++|+.+.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G--~~V~~~dr~~~ 35 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAG--CSVTIWNRSPE 35 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCC--CeEEEEcCCHH
Confidence 68999999999999999999999 99999998753
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=90.33 E-value=0.34 Score=42.84 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=31.4
Q ss_pred CCCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...++|+|+|| |.-|..++..|++.| ++|++++|..
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~ 55 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNE 55 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSG
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECCh
Confidence 35789999998 999999999999999 9999998753
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.31 E-value=0.29 Score=48.82 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.|||.|.-|+..|..|++.+++++|+++|+..
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 3578999999999999999999994349999999864
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=90.31 E-value=0.38 Score=45.19 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
+..++|.|||+|..|.++|..|+..+ . +++|+|..+
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~--~~~v~l~Di~~ 39 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQ--LGDVVLFDIAQ 39 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CceEEEEeCCh
Confidence 34679999999999999999999988 5 999999654
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=0.32 Score=42.33 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=29.3
Q ss_pred CeEEEEC-CCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIG-gG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|+||| +|..|.+.|..|.+.+ ++|+++++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g--~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 4799999 9999999999999998 899999865
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.33 Score=45.25 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=28.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|+|||+|.-|.+.|..|. .+ .+|+++++.
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g--~~V~~~~r~ 33 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LY--HDVTVVTRR 33 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TT--SEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHh-cC--CceEEEECC
Confidence 68999999999999999999 88 999999865
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.33 Score=45.09 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
..++|+|||+|.+|.++|..|.+.| . +|++++|.
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~~G--~~~V~v~nR~ 174 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLSTA--AERIDMANRT 174 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTT--CSEEEEECSS
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCC--CCEEEEEeCC
Confidence 5679999999999999999999998 7 89999865
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=0.42 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=30.8
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|+|| |.-|.+++..|.+.+ ++|+++++.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeCh
Confidence 78999999 999999999999999 9999999864
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.35 Score=42.12 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.5
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
|+|+|+|| |..|..++..|.+.| ++|+++.|.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~ 33 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG--HEVLAVVRD 33 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEec
Confidence 47999998 999999999999999 999999875
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.26 Score=47.87 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=29.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|.|||+|..|+..|..|++ | ++|+++|+.+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G--~~V~~~d~~~ 32 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-Q--NEVTIVDILP 32 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-T--SEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHhC-C--CEEEEEECCH
Confidence 479999999999999999999 8 9999999864
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.33 Score=44.18 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=31.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|+|+|+-|...+..|.+.| ++|+++.+.+
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g--~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQG--WRIIGTSRNP 38 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGT--CEEEEEESCG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCC--CEEEEEEcCh
Confidence 478999999999999999999999 9999998754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.03 E-value=0.3 Score=47.69 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||.|.-|...|..|.+.+ ++|++||+.+
T Consensus 3 ~~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~ 37 (413)
T 3l9w_A 3 HGMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDP 37 (413)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCH
Confidence 4578999999999999999999999 9999999763
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.00 E-value=0.31 Score=45.69 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCc--eEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~--~v~lie~~ 53 (415)
++|+|||+|..|.+.|..|++.+ + +|+++|+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g--~~~~V~l~D~~ 34 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKG--FAREMVLIDVD 34 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT--CCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CCCeEEEEeCC
Confidence 47999999999999999999998 7 99999864
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=89.95 E-value=0.36 Score=46.15 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+.++|.|||.|.-|...|..|.+.| ++|+++|+.+
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G--~~V~v~dr~~ 55 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGG--HECVVYDLNV 55 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 35689999999999999999999999 9999999874
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.92 E-value=0.3 Score=45.79 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
++|.|||+|..|.+.|..|.+.| ++|+++++
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g--~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGT 31 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC--CEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CeEEEEEc
Confidence 47999999999999999999999 99999987
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.85 E-value=0.36 Score=45.46 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=30.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.++|.|||+|.-|...|..|.+.| ++|+++++.
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G--~~V~~~~r~ 46 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENG--EEVILWARR 46 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 578999999999999999999999 999999875
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.71 E-value=0.39 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.|||+|.-|...|..|+ .| ++|+++|+.+
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG--~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SK--HEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TT--SEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cC--CEEEEEECCH
Confidence 5789999999999999999999 98 9999999764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=0.42 Score=44.65 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
++|+|||+|..|...|..|+..+ . +|+|+|...
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g--~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKE--LGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCeEEEEeCCc
Confidence 58999999999999999999988 5 799999653
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=0.29 Score=44.76 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|+|+|-+|.++|..|++.| .+|++++|..
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~G--~~v~v~~R~~ 152 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTF 152 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCH
Confidence 5678999999999999999999999 9999998653
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=89.65 E-value=0.18 Score=50.09 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=23.2
Q ss_pred cccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 378 t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|..||+|.+||.+....++. .|+..|+.+|..|++
T Consensus 455 t~i~gLyl~G~~t~pG~Gv~-ga~~SG~~aA~~il~ 489 (501)
T 4dgk_A 455 KTITNLYLVGAGTHPGAGIP-GVIGSAKATAGLMLE 489 (501)
T ss_dssp -CCTTEEECCCH------HH-HHHHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCcccHH-HHHHHHHHHHHHHHH
Confidence 56899999999764334555 578889999988765
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=89.60 E-value=0.38 Score=44.80 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.++|+|||+|..|.+.|..|+..+...+++|+|...
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 4578999999999999999999998222999999754
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.38 Score=47.41 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=32.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++.|||.|+-|+..|..|++.| ++|+++|+.+.
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G--~~V~~~D~~~~ 42 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFG--HEVVCVDKDAR 42 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCST
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence 468999999999999999999999 99999999865
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.47 E-value=0.46 Score=44.17 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.|||.|.-|...|..|++.| ++|+++|+.+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G--~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQG--KRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCH
Confidence 4678999999999999999999999 9999999874
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=89.40 E-value=0.28 Score=45.43 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|.|||.|.-|...|..|++.| ++|+++|+.+.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWP--GGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTST--TCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCHH
Confidence 568999999999999999999999 99999998764
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.39 Score=44.96 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=27.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDII 50 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~li 50 (415)
..++|+|||+|.-|.+.|..|++.| .+|+++
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G--~~V~l~ 48 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAG--HEVILI 48 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTT--CEEEEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCC--CeEEEE
Confidence 5789999999999999999999998 899988
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.43 Score=47.26 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.|||+|.-|...|..|++.| ++|+++|+.+
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G--~~V~l~D~~~ 70 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVG--ISVVAVESDP 70 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 4568999999999999999999999 9999999764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.43 Score=44.26 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.-..++|.|||+|..|..+|..|...| .+|+++|+.
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~ 189 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARS 189 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECC
Confidence 346789999999999999999999999 899999864
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=0.39 Score=44.57 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=29.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||+|..|.++|..|+..+...+++|+|..+
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~ 35 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 57999999999999999999988212899999643
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.37 E-value=0.44 Score=44.04 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
-..++|.|||.|..|..+|..|...| .+|+++|+.
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~ 187 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAALG--AKVKVGARE 187 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECC
Confidence 46789999999999999999999999 899999864
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.29 E-value=0.46 Score=44.21 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.|||+|.-|...|..|.+.+ ++|+++|+.+
T Consensus 29 ~~~~I~iIG~G~mG~~~a~~l~~~g--~~V~~~~~~~ 63 (316)
T 2uyy_A 29 TDKKIGFLGLGLMGSGIVSNLLKMG--HTVTVWNRTA 63 (316)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSG
T ss_pred CCCeEEEEcccHHHHHHHHHHHhCC--CEEEEEeCCH
Confidence 3578999999999999999999998 8999998654
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.48 Score=44.95 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=30.5
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||+ |..|.++|..+...+...+++|+|..
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~ 43 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF 43 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5678999998 99999999999998833489999853
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=89.24 E-value=0.39 Score=44.86 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
..++|.|||.|.-|...|..|++.| + +|+++|+..
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G--~~~V~~~dr~~ 58 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAG--AIDMAAYDAAS 58 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHS--CCEEEEECSSC
T ss_pred CCCEEEEECccHHHHHHHHHHHHCC--CCeEEEEcCCC
Confidence 4679999999999999999999999 8 999999863
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=0.52 Score=44.16 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.+++|+|||+|..|.++|..|+..+...+++|+|..
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 457999999999999999999988733489999853
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=89.14 E-value=0.47 Score=44.77 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..+.++|+|||+|..|.+.|..|+..+...+++|+|..
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 45678999999999999999999998822389999953
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=89.08 E-value=0.55 Score=44.23 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=30.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|.|||+|..|.++|..|+..+--.+++|+|..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~ 55 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM 55 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 568999999999999999999998821289999963
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=89.05 E-value=0.3 Score=44.90 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=30.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|.|||.|.-|...|..|++.| ++|+++|+.+
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G--~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAG--FDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHT--CCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHHCC--CeEEEEcCCH
Confidence 57999999999999999999999 9999999765
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=89.01 E-value=0.53 Score=43.60 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=31.5
Q ss_pred CCCeEEEEC-CCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIG-gG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|.||| +|.-|.+.|..|.+.| ++|+++++.+
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G--~~V~~~~~~~ 55 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASG--YPISILDRED 55 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCC--CeEEEEECCc
Confidence 346899999 9999999999999999 8999999765
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.97 E-value=0.47 Score=43.26 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|.|||+|.-|.+.|..|.+.+ ++|+++|+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g--~~V~~~~~~ 32 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQ 32 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC--CEEEEEECC
Confidence 47999999999999999999998 899999865
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=0.57 Score=43.86 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=30.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||+|..|.+.|..|+..+...+++++|..
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~ 40 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 457999999999999999999888733489999854
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=88.95 E-value=0.39 Score=47.63 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|.|||.|..|...|..|++.+++++|+++|+.+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 468999999999999999999993339999999874
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=0.54 Score=44.29 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=29.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
.++++|+|||+|..|.++|..|...+-..+++|+|.
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di 42 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI 42 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence 356899999999999999999988872237888884
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=88.86 E-value=0.52 Score=43.43 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=31.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...++++|+|+|-+|-+++..|++.| . +|+|++|.
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G--~~~v~i~~R~ 160 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHG--VQKLQVADLD 160 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEECC
Confidence 36789999999999999999999998 7 69999865
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.68 E-value=0.44 Score=41.65 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+|+|| |+.|...+..|.+.| ++|+++++.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 39 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPE 39 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGG
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcc
Confidence 478999996 999999999999999 99999998743
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=88.65 E-value=0.63 Score=44.49 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
-..++|+|+|.|..|..+|..|.+.| .+|++.|+
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~G--akVvv~D~ 204 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEG--AKLVVTDV 204 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECS
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCC--CEEEEEcC
Confidence 46789999999999999999999999 99998884
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=0.53 Score=44.08 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...++++|+|+|-+|-++|..|++.| . +|+|++|.
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~~G--a~~V~i~nR~ 187 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAALDG--VKEISIFNRK 187 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECS
T ss_pred ccCCEEEEECCChHHHHHHHHHHHCC--CCEEEEEECC
Confidence 36789999999999999999999998 7 89999876
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=0.61 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCc--eEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~--~v~lie~~~ 54 (415)
.++|.|||.|.-|.+.|..|.+.| + +|+++|+.+
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G--~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSG--FKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTT--CCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC--CCCEEEEEECCH
Confidence 478999999999999999999999 6 899998764
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=88.43 E-value=0.51 Score=44.19 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=29.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||+|..|.++|..|+..+-..+++|+|..+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 35 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 57999999999999999999988212899999654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.36 E-value=0.56 Score=42.79 Aligned_cols=32 Identities=22% Similarity=0.089 Sum_probs=28.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCc--eEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEA--QVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~--~v~lie~~ 53 (415)
++|.|||+|.-|.+.|..|.+.| + +|+++|+.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g--~~~~V~~~d~~ 35 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSG--FKGKIYGYDIN 35 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CCSEEEEECSC
T ss_pred cEEEEEecCHHHHHHHHHHHhcC--CCcEEEEEeCC
Confidence 57999999999999999999998 6 89988854
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=0.66 Score=43.28 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCCCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
....++|+|.|| |+.|.+++..|++.| ++|+++++..
T Consensus 17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g--~~V~~~~r~~ 54 (330)
T 2pzm_A 17 RGSHMRILITGGAGCLGSNLIEHWLPQG--HEILVIDNFA 54 (330)
T ss_dssp TTTCCEEEEETTTSHHHHHHHHHHGGGT--CEEEEEECCS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCC
Confidence 345789999998 999999999999999 9999999854
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=88.31 E-value=0.44 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||+|-+|-+.|..|.+.+ .+|+++++.
T Consensus 128 ~~~~v~iiGaG~~g~aia~~L~~~g--~~V~v~~r~ 161 (275)
T 2hk9_A 128 KEKSILVLGAGGASRAVIYALVKEG--AKVFLWNRT 161 (275)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSS
T ss_pred CCCEEEEECchHHHHHHHHHHHHcC--CEEEEEECC
Confidence 4678999999999999999999998 799999865
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=88.30 E-value=0.23 Score=44.16 Aligned_cols=33 Identities=6% Similarity=0.046 Sum_probs=28.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|+|+|..|...|..|.+.+ + |+++|+.
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g--~-v~vid~~ 40 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSE--V-FVLAEDE 40 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSE--E-EEEESCG
T ss_pred CCCEEEEECCChHHHHHHHHHHhCC--e-EEEEECC
Confidence 4678999999999999999999988 8 9999854
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=88.18 E-value=0.62 Score=42.61 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...++++|+|+|-+|-+++..|++.| . +|++++|.
T Consensus 118 l~~k~~lvlGaGg~~~aia~~L~~~G--~~~v~i~~R~ 153 (272)
T 3pwz_A 118 LRNRRVLLLGAGGAVRGALLPFLQAG--PSELVIANRD 153 (272)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTC--CSEEEEECSC
T ss_pred ccCCEEEEECccHHHHHHHHHHHHcC--CCEEEEEeCC
Confidence 36789999999999999999999998 6 89999864
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=88.13 E-value=0.6 Score=42.83 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=30.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|.|||+|.-|.+.|..|.+.+++.+|+++|+.
T Consensus 5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~ 40 (290)
T 3b1f_A 5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS 40 (290)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 357899999999999999999998534789988854
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=88.12 E-value=0.58 Score=43.12 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=32.3
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+++|+|+|| |+.|.+++..|.+.| ++|+++++...
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASG--EEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CCEEEECCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCC--CEEEEEecCCc
Confidence 4678999999 999999999999999 99999998754
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=0.73 Score=44.30 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|+|||+|..|..++..+.+.| ++|+++|..+.
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~ 48 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKN 48 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCC
Confidence 46779999999999999999999999 99999997653
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.91 E-value=0.57 Score=42.99 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=30.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc---eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA---QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~---~v~lie~~~ 54 (415)
..++|.|||+|.-|.+.|..|.+.+ + +|+++|+++
T Consensus 2 ~~~~I~iIG~G~mG~aia~~l~~~g--~~~~~V~v~dr~~ 39 (280)
T 3tri_A 2 NTSNITFIGGGNMARNIVVGLIANG--YDPNRICVTNRSL 39 (280)
T ss_dssp CCSCEEEESCSHHHHHHHHHHHHTT--CCGGGEEEECSSS
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCC--CCCCeEEEEeCCH
Confidence 3578999999999999999999998 6 899998654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=87.90 E-value=0.61 Score=46.25 Aligned_cols=35 Identities=23% Similarity=0.085 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
-..++|+|+|+|..|.++|..|+..| .+|+++|+.
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~G--A~Viv~D~~ 297 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAG--ARVIVTEID 297 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 36789999999999999999999999 899999864
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.86 E-value=0.2 Score=44.77 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=31.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+..++|.|||.|.-|.+.|..|++.| ++|+.+++.
T Consensus 4 ~~~mkI~IIG~G~~G~sLA~~L~~~G--~~V~~~~~~ 38 (232)
T 3dfu_A 4 APRLRVGIFDDGSSTVNMAEKLDSVG--HYVTVLHAP 38 (232)
T ss_dssp CCCCEEEEECCSCCCSCHHHHHHHTT--CEEEECSSG
T ss_pred CCCcEEEEEeeCHHHHHHHHHHHHCC--CEEEEecCH
Confidence 35679999999999999999999999 999999873
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=87.84 E-value=2.2 Score=41.67 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...+|+|||+|-.|-.+|..|++.| -.+++|+|..
T Consensus 39 ~~~~VlvvG~GGlGs~va~~La~aG-vg~i~ivD~D 73 (434)
T 1tt5_B 39 DTCKVLVIGAGGLGCELLKNLALSG-FRQIHVIDMD 73 (434)
T ss_dssp HTCCEEEECSSTHHHHHHHHHHHTT-CCCEEEEECC
T ss_pred cCCEEEEECcCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 4678999999999999999999999 3489999876
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=87.80 E-value=0.38 Score=44.17 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~ 55 (415)
..++++|+|+|-+|-++|..|.+.| . +|++++|...
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~~G--~~~v~v~~R~~~ 152 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYKIV--RPTLTVANRTMS 152 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHTTC--CSCCEEECSCGG
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEeCCHH
Confidence 5678999999999999999999998 7 8999998753
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=87.78 E-value=0.41 Score=45.67 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=29.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+|.|||+|.-|.+.|..|.+.| ++|+++++.+
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G--~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKC--REVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTE--EEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CEEEEEECCH
Confidence 8999999999999999999998 9999999763
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=87.75 E-value=0.61 Score=42.93 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
...++++|+|+|-+|-+++..|.+.| . +|+|++|..
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G--~~~v~v~nRt~ 156 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNF--AKDIYVVTRNP 156 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTT--CSEEEEEESCH
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcC--CCEEEEEeCCH
Confidence 36789999999999999999999998 7 899998653
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=0.66 Score=43.38 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=31.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...++++|+|+|-+|-+++..|++.| . +|+|++|.
T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G--~~~v~v~nRt 181 (312)
T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEG--IKEIKLFNRK 181 (312)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEECS
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 36789999999999999999999998 7 89999876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 415 | ||||
| d1cjca1 | 225 | c.3.1.1 (A:107-331) Adrenodoxin reductase of mitoc | 5e-58 | |
| d1lqta1 | 216 | c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA | 6e-58 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 4e-28 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 2e-23 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 5e-09 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 1e-08 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 7e-07 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 5e-06 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 1e-05 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 6e-04 | |
| d1gtea3 | 153 | c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas | 7e-04 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 7e-04 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 0.002 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 0.002 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 0.002 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 0.003 |
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 187 bits (475), Expect = 5e-58
Identities = 100/229 (43%), Positives = 131/229 (57%), Gaps = 10/229 (4%)
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
+AL IPGE+L GV SAR FV WYNG P+ + L+PDL S DTAVILGQGNVALDVARILL
Sbjct: 2 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLT 60
Query: 181 PTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240
P + L TDI A AL S ++ V++VGRRGP+Q A T KELRE++ + +
Sbjct: 61 PPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPA 120
Query: 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAA-----ASASSQPMLGQRELHFVFFRKPDSFL 295
D + + +R ++R+ ELL + A +++ R FFR P
Sbjct: 121 DF--LGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQV- 177
Query: 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344
+ +G+ T L+G G AV TG+ EDL CG+VL SIGY
Sbjct: 178 LPSPDGRRAAGIRLAVTRLEGIG-EATRAVPTGDVEDLPCGLVLSSIGY 225
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 187 bits (474), Expect = 6e-58
Identities = 89/225 (39%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILL 179
DR L IPGEDL G +A +FV WYN HP + +SPDL S AV++G GNVALDVARILL
Sbjct: 1 DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILL 59
Query: 180 RPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239
+ LA TDIA +A +L I++V +VGRRGP+QAA T ELRE+ + + V I
Sbjct: 60 TDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDP 119
Query: 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNE 299
+ + TDE+ ++ ++ ++L A +P G R + F F P +
Sbjct: 120 AE-LDGITDEDAAAVGKVCKQNIKVLRGY---ADREPRPGHRRMVFRFLTSP----IEIK 171
Query: 300 RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344
V + + L G G+ A TGE E+L +V++S+GY
Sbjct: 172 GKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY 216
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 108 bits (271), Expect = 4e-28
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 9/201 (4%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-----QVDIIDRLPTPFGLVRSGVAPDHPETKI 73
P + +VGSGP+ F+ A LKA VD+++ LPTP+GLVRSGVAPDHP+ K
Sbjct: 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKS 61
Query: 74 VINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGV 133
+ QF + + R FFGNV +G V EL + Y V+ A GA+S
Sbjct: 62 ISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSRGVPTPGLPFDDQS 121
Query: 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASY 193
+ NG P+ + + T VI A D L++ L +
Sbjct: 122 GTIPNVGGRINGSPNEYVVGWIKRG-PTGVIGTNKKDAQDTVDTLIKN---LGNAKEGAE 177
Query: 194 AWTALEGSSIRKVYLVGRRGP 214
+ E + + + R P
Sbjct: 178 CKSFPEDHADQVADWLAARQP 198
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 95.8 bits (237), Expect = 2e-23
Identities = 73/223 (32%), Positives = 103/223 (46%), Gaps = 1/223 (0%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSR 80
++CVVGSGPAGFYTA+ LK H A VDI ++ PFGLVR GVAPDHPE K VIN F++
Sbjct: 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 62
Query: 81 VVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFV 140
+ +RC+F+GNV +G V++ EL+ YH VVL+YGAE P +
Sbjct: 63 TARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNM 122
Query: 141 WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200
G S +K T VI + +ILL+ + ++
Sbjct: 123 EGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSAFIKA 182
Query: 201 S-SIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242
R V+ V + + G + ++ L
Sbjct: 183 LLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEML 225
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 53.6 bits (127), Expect = 5e-09
Identities = 22/161 (13%), Positives = 49/161 (30%), Gaps = 5/161 (3%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVIN 76
+ ++ ++G+GPA A L + + I ++ GL S + +V
Sbjct: 2 AYSAKIALLGAGPASISCAS-FLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNF 60
Query: 77 QFSRVVQHERCSFFGNVTLGSSVSLSELRQL-YHVVVLAYGAESDRALGIPGEDLIGVHS 135
+ + G + ++L+ L++ Y + G E L +
Sbjct: 61 EIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKF 120
Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176
R + + + D G N ++
Sbjct: 121 NRWDLPEVDPETMQTSEPWVFAGGDIV---GMANTTVESVN 158
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 52.1 bits (124), Expect = 1e-08
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 21/159 (13%)
Query: 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVI 75
+ VVG+GPAG A A + QV + D G P E +
Sbjct: 41 VQKKNLAVVGAGPAGLAFAINA--AARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETL 98
Query: 76 NQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135
+ R+++ + L +V+ +L+ ++ A GIP L
Sbjct: 99 RYYRRMIEVTGVTLK----LNHTVTADQLQAFDETIL---------ASGIPNRALAQPLI 145
Query: 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDV 174
G G +++ +L A+ G +AL++
Sbjct: 146 DSGKTVHLIG---GCDVAMEL-DARRAIAQG-TRLALEI 179
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (114), Expect = 7e-07
Identities = 29/185 (15%), Positives = 48/185 (25%), Gaps = 20/185 (10%)
Query: 4 ARAWLSRSFTALSSN-PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
+RA SR F L V +VG+G +G A K + +V II+ P G
Sbjct: 34 SRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 93
Query: 63 GVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRA 122
G + +V+ + + + E L + L +
Sbjct: 94 G---GQLFSAMVMRKPAHLFLQE---------LEIPYEDEGDYVVVKHAALFISTVLSKV 141
Query: 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPT 182
L +P L + V V + + P
Sbjct: 142 LQLPNVKLFNATCVEDLVTRPPTEKGEVT-------VAGVVTNWTLVTQAHGTQCCMDPN 194
Query: 183 EELAT 187
Sbjct: 195 VIELA 199
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 45.3 bits (106), Expect = 5e-06
Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 11/193 (5%)
Query: 4 ARAWLSRSFTALSSNP-LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62
+R R T + + V VVG+G AG +A + + QV II++ +P G
Sbjct: 17 SREMTRRYMTDMITYAETDVVVVGAGSAG-LSAAYEISKNPNVQVAIIEQSVSPGGGAWL 75
Query: 63 G-----VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGA 117
G + +++ V E+ ++ S + L V + A
Sbjct: 76 GGQLFSAMIVRKPAHLFLDEIG-VAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNA 134
Query: 118 ESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
+ L + G + GV + V + ++ V+ G+ A
Sbjct: 135 VAAEDLIVKGNRVGGVVTNWALV---AQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 191
Query: 178 LLRPTEELATTDI 190
+ R +
Sbjct: 192 VKRLKSIGMIDHV 204
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 12/60 (20%)
Query: 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
R I G D V S + L + I+G G + D A L +
Sbjct: 3 RTPPIDGIDHPKVLSYLDV------------LRDKAPVGNKVAIIGCGGIGFDTAMYLSQ 50
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 38.9 bits (89), Expect = 6e-04
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFS 79
R+ ++G GPAG+ A +H E QV +ID V P K I
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPS----KTFIASTG 58
Query: 80 RVVQHERCSFFGNVTLGSSVSL 101
+ R G +
Sbjct: 59 LRTELRRAPHLGFHIDFDDAKI 80
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.8 bits (87), Expect = 7e-04
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 123 LGIPGEDLIGVHSAREFVWWYN-----GHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177
G+ + G +++++F+ G + P ++ ++LG G+ A D A
Sbjct: 8 QGLTQDQ--GFYTSKDFLPLVAKSSKAGMCACHSPLPSIR--GAVIVLGAGDTAFDCATS 63
Query: 178 LLR 180
LR
Sbjct: 64 ALR 66
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 38.7 bits (88), Expect = 7e-04
Identities = 24/169 (14%), Positives = 44/169 (26%), Gaps = 17/169 (10%)
Query: 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVI 75
+ N V +VG+GP+G A V + D G + A
Sbjct: 46 TKNKDSVLIVGAGPSGSEAARV--LMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYH 103
Query: 76 NQFS----RVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLI 131
+ + + + + L+ V++A GA S+ L +
Sbjct: 104 RDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGA-SECTLWNELKARE 162
Query: 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180
+ + Y +I VAR +
Sbjct: 163 SEWAENDIKGIYLIGDAEAPR----------LIADATFTGHRVAREIEE 201
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 37.8 bits (86), Expect = 0.002
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH 68
+SNP V +VG+G AG A A QV +++ P G VR+ +
Sbjct: 27 TSNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVRTYRNEEA 77
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 38.0 bits (86), Expect = 0.002
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP 69
RV VVG+G +G +A K L + I++ G +
Sbjct: 2 RVIVVGAGMSG-ISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGIN 49
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.4 bits (85), Expect = 0.002
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56
P+ + + G+G G A L +V +++
Sbjct: 1 PIDILIAGAGIGGLSCA-LALHQAGIGKVTLLESSSEI 37
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 36.9 bits (84), Expect = 0.003
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR----SGVAPDHPETKIVIN 76
++ ++G+GP+G TA+ L QV + +R +P G+ P T ++
Sbjct: 6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 65
Query: 77 QFSRVVQHERCSFFGNV 93
V + +
Sbjct: 66 TEPIVGPAALPVYPSPL 82
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 415 | |||
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.89 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 99.87 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.78 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.73 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.69 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.68 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.68 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.68 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.65 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.64 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.63 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.62 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.57 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.55 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.53 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.53 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.52 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.5 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.49 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.49 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.46 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.46 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.42 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.41 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.38 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.35 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.29 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.29 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.29 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.28 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.26 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 99.2 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.18 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.17 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.17 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.17 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.17 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.14 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.14 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.13 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.12 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.11 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.11 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.1 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.07 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.07 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.06 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.06 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.06 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.04 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.04 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.02 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.01 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.0 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.99 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.99 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.97 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.97 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.97 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.96 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.95 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.94 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.93 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.92 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.92 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.91 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.9 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.88 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.88 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.86 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.86 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.85 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.82 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.82 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.82 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.81 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.81 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.8 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.8 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.8 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.79 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.78 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.78 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.78 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.77 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.75 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.74 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.72 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.72 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.72 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.71 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.7 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.68 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.66 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.66 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.64 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.62 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.61 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.59 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.58 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.58 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.58 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.57 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.55 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.54 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.5 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.41 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.41 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.38 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.36 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.36 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.3 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.3 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.28 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.26 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.26 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.22 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.18 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.18 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.16 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.14 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.12 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.06 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.99 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.99 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.93 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.86 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.81 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.78 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.75 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.72 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.67 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.66 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.64 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.61 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.39 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.27 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.24 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.21 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.1 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.0 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.99 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 96.87 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.82 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 96.76 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.75 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 96.65 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 96.64 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 96.47 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 96.42 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.41 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.36 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.27 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 96.26 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.23 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.17 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.14 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 96.1 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.07 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.04 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.99 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.79 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 95.73 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 95.69 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.52 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.49 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 95.48 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.44 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.42 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.25 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.04 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.91 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.87 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 94.84 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.82 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.59 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.55 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.5 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.49 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.47 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.29 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 94.18 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.05 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.03 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.01 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.01 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 93.98 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.92 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.9 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.81 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.78 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.74 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 93.53 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 93.45 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.38 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.38 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.32 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 93.07 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.63 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.63 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 92.58 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 92.57 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 92.51 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.46 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.34 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.3 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 92.26 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 92.22 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.22 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 92.09 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 92.06 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.03 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 91.86 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 91.84 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 91.7 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.63 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.61 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 91.58 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 91.57 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 91.5 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 91.4 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.36 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 91.17 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 90.92 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 90.82 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.69 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 90.64 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 90.48 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 90.16 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 90.04 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 89.61 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 89.36 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 89.22 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.16 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 89.03 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 88.97 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 88.87 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 88.74 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 88.63 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 88.61 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 88.55 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 88.51 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.42 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 88.33 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 88.24 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 87.97 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 87.92 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 87.83 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 87.81 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.79 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.68 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.55 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.47 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 87.44 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 87.44 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 87.42 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 87.06 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 87.04 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 86.99 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 86.44 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 86.4 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 86.21 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.02 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 85.94 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 85.57 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 85.26 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 85.06 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 85.01 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 84.82 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.64 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 84.46 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 84.43 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 84.38 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 83.66 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.65 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 83.37 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.33 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 83.28 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 83.17 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 82.71 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 82.56 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 82.55 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 82.36 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 82.08 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 82.02 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 81.82 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 81.55 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 81.47 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 81.3 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 81.2 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 81.06 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 81.01 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 80.9 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 80.64 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 80.12 |
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=2.4e-22 Score=180.00 Aligned_cols=216 Identities=40% Similarity=0.624 Sum_probs=177.3
Q ss_pred CCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhh
Q 014990 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (415)
Q Consensus 120 ~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~ 199 (415)
++.++|||.++++++++.+|+.|++++++.......+ .+++|+|||+|++|++||..+.+...+|.++||...++.++.
T Consensus 1 dR~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~-~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~ 79 (216)
T d1lqta1 1 DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDL-SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLR 79 (216)
T ss_dssp ECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCC-CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHT
T ss_pred CCCCCCCCCCCCCcEeHHHHHHHHhCCccccccCccc-cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHh
Confidence 3678999999999999999999999887665554444 689999999999999999999998899999999999999999
Q ss_pred cCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCC
Q 014990 200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG 279 (415)
Q Consensus 200 ~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 279 (415)
+.++++|+++.|+.+...+|+..|++++...+.....++..++........... .+..++..+.+..+.. ..+...
T Consensus 80 r~~~~~V~iv~RRg~~~~~ft~~Elre~~~l~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~---~~~~~~ 155 (216)
T d1lqta1 80 PRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAV-GKVCKQNIKVLRGYAD---REPRPG 155 (216)
T ss_dssp TCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHH-CHHHHHHHHHHHHHHT---CC-CTT
T ss_pred hcCCceEEEEEECChHhCCCChhhhhhhcccCCCCccCCHHHccchhhhhhhhh-ccchhHHHHHHHHhhh---hccccC
Confidence 999999999999999999999999999999999888887766554443322222 3344455556655543 234455
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
...+.+++...+.++. .++.+.++.+..+.+..+..|....+++|+..+|+||+||.|+||
T Consensus 156 ~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~d~~g~~~~~~~g~~~~i~~dlvi~AIGy 216 (216)
T d1lqta1 156 HRRMVFRFLTSPIEIK----GKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY 216 (216)
T ss_dssp SEEEEEECSEEEEEEE----CSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCE
T ss_pred cceeeeeecccccccc----ccCceeEEEEEEEEEeeCCCCCeeeecCCcEEEEECCEEEECCCC
Confidence 6778888888888886 478899999998888877778877777788889999999999997
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.87 E-value=2.3e-21 Score=174.59 Aligned_cols=218 Identities=46% Similarity=0.732 Sum_probs=170.5
Q ss_pred CCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhc
Q 014990 121 RALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (415)
Q Consensus 121 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~ 200 (415)
+.++|||.++++++++.+|+.|++++++.......+ .+++|+|||+|++|++||..+.+...+|..+||.+.+++.++.
T Consensus 2 R~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~-~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~ 80 (225)
T d1cjca1 2 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDL-SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 80 (225)
T ss_dssp CCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCT-TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred CCCCCCCCCCCCcEeHHHHHHHHhCCccccccCccc-cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence 567999999999999999999999887765555554 6899999999999999999999989999999999999999999
Q ss_pred CCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCC-----C
Q 014990 201 SSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASS-----Q 275 (415)
Q Consensus 201 ~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~ 275 (415)
.++++|+++.|+++...+|+.+|++++...+++...+...++... ...........++..+.+.+....... .
T Consensus 81 ~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (225)
T d1cjca1 81 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGL--QDRIKEAARPRKRLMELLLRTATEKPGVEEAAR 158 (225)
T ss_dssp CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTH--HHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred cCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccc--hhhhhhhhhHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999999999999998888887765554322 222223345566666666555432100 0
Q ss_pred CCCCceeEEEEeccccccccccCCCC-CCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 276 PMLGQRELHFVFFRKPDSFLESNERS-GHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~v~~~~~~~-~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
.....+++.++|...+.++. .+++ +++.++++....+..+ ++.....++|+..+++||+||.|+||
T Consensus 159 ~~~~~~~i~~~f~~~p~~i~--~~~~g~~v~~v~~~~~~~~~~-~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 159 RASASRAWGLRFFRSPQQVL--PSPDGRRAAGIRLAVTRLEGI-GEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp HHTCSEEEEEECSEEEEEEE--ECTTSSSEEEEEEEEEEEESS-GGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ccccccceEEEeeccccccc--ccCCCCeEEEEEEEEeEECCC-CCCCcccCCCcEEEEECCEEEECCCC
Confidence 12346789999999999998 4233 4788898877665422 22223345788889999999999997
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.8e-20 Score=158.51 Aligned_cols=125 Identities=25% Similarity=0.316 Sum_probs=104.5
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC-CCCCCcchHHHHHHHHHHhhccCeEEEec
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQHERCSFFGN 92 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (415)
.+..++++|+|||||||||+||..|+++| ++|+|||+.+.+||.+.+. ..|.+..+.++.+++.++++..+++++++
T Consensus 38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G--~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~ 115 (179)
T d1ps9a3 38 LPAVQKKNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLN 115 (179)
T ss_dssp CSCSSCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEES
T ss_pred CCCCCCcEEEEECccHHHHHHHHHHHhhc--cceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeC
Confidence 34567899999999999999999999999 9999999999999988754 34788888899999999999999999998
Q ss_pred eEeceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHH
Q 014990 93 VTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 93 ~~v~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
+.+.. +....||+||+|||+ .++.+++||.+ .+++|+|||+|.+++
T Consensus 116 ~~Vt~-----~~~~~~d~vilAtG~-~~~~~~~pg~~----------------------------~g~~v~vigggd~a~ 161 (179)
T d1ps9a3 116 HTVTA-----DQLQAFDETILASGI-PNRALAQPLID----------------------------SGKTVHLIGGCDVAM 161 (179)
T ss_dssp CCCCS-----SSSCCSSEEEECCCE-ECCTTHHHHHT----------------------------TTCCEEECGGGTCCS
T ss_pred CEEcc-----cccccceeEEEeecC-CCcccccchhc----------------------------cCCEEEEECCcHhhh
Confidence 87632 234589999999998 56665544321 478999999999998
Q ss_pred HH
Q 014990 173 DV 174 (415)
Q Consensus 173 e~ 174 (415)
++
T Consensus 162 ~~ 163 (179)
T d1ps9a3 162 EL 163 (179)
T ss_dssp SC
T ss_pred hc
Confidence 86
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=2.4e-19 Score=162.04 Aligned_cols=162 Identities=36% Similarity=0.553 Sum_probs=118.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-----CCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH-----QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGN 92 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g-----~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (415)
++++|+|||+|||||+||.+|++.| .+++|+|||+.+.+||++++++.|.+...+++.+.....+...++++..+
T Consensus 1 rp~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (239)
T d1lqta2 1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN 80 (239)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred CCcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEE
Confidence 3579999999999999999999987 23589999999999999999998888888888888888888999999999
Q ss_pred eEeceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHH
Q 014990 93 VTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 93 ~~v~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
+.++.+...++....||++++|||+. +..+.++|.+.........+...................+++++|+|+|.+++
T Consensus 81 ~~v~~~~~~~~~~~~~~~v~~atGa~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~ 159 (239)
T d1lqta2 81 VVVGEHVQPGELSERYDAVIYAVGAQ-SRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQ 159 (239)
T ss_dssp CCBTTTBCHHHHHHHSSEEEECCCCC-EECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHH
T ss_pred EEeccccchhhhhccccceeeecCCC-ccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHH
Confidence 99887777766667899999999994 45546666553333222222211111100000000011367888999999999
Q ss_pred HHHHHHhc
Q 014990 173 DVARILLR 180 (415)
Q Consensus 173 e~a~~L~~ 180 (415)
+++..+..
T Consensus 160 d~a~~~v~ 167 (239)
T d1lqta2 160 DTVDTLIK 167 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99977653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.69 E-value=1.1e-16 Score=140.65 Aligned_cols=180 Identities=11% Similarity=0.083 Sum_probs=116.1
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 239 (415)
.+|+|||+|++|+|+|..|.+ .....+|+++.|+... .+....+-..+.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~-------------------~~~~~~V~v~~~~~~~--~~~~~~~~~~l~---------- 49 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLN-------------------LHPDAEIQWYEKGDFI--SFLSAGMQLYLE---------- 49 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHH-------------------HCTTSEEEEEESSSSS--SBCGGGHHHHHT----------
T ss_pred CEEEEECCcHHHHHHHHHHHh-------------------cCCCCeEEEEeCCCcc--cccccCcchhhc----------
Confidence 379999999999999999986 2233589999987543 222211111111
Q ss_pred cccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCC
Q 014990 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (415)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~ 319 (415)
..+ . ....+... ..+.+. ++||+++++..+.++. . +++ .+++.+.
T Consensus 50 ~~~---~-~~~~~~~~-----~~~~l~-------------~~gi~v~~~~~V~~i~--~--~~~--~v~~~~~------- 94 (198)
T d1nhpa1 50 GKV---K-DVNSVRYM-----TGEKME-------------SRGVNVFSNTEITAIQ--P--KEH--QVTVKDL------- 94 (198)
T ss_dssp TSS---C-CGGGSBSC-----CHHHHH-------------HTTCEEEETEEEEEEE--T--TTT--EEEEEET-------
T ss_pred ccc---c-chHHHHHh-----hHHHHH-------------HCCcEEEEeeceeeEe--e--ccc--cceeeec-------
Confidence 000 0 00001000 011111 5689999999998886 3 322 3444432
Q ss_pred CcceeccCCceEEEecCeeEEeeccCCccCCCC----cccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc-
Q 014990 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGL----PFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT- 394 (415)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~----~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~- 394 (415)
.+|++.++++|.+|+|+|..|....+. .+. ..++.++++|.+.+|++ ++|+.|||||+|||+..+.
T Consensus 95 ------~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~-~~~~~~~~~G~i~vd~~--~~T~~~~IyA~GD~a~~~~~ 165 (198)
T d1nhpa1 95 ------VSGEERVENYDKLIISPGAVPFELDGVRPNTAWL-KGTLELHPNGLIKTDEY--MRTSEPDVFAVGDATLIKYN 165 (198)
T ss_dssp ------TTCCEEEEECSEEEECCCEEECCCCCEEESCGGG-TTTSCBCTTSCBCCCTT--CBCSSTTEEECGGGSCEEEG
T ss_pred ------ccccccccccceeeEeecceeecccccccccccc-cccceeccCCceecCCc--ccccccceEEecceeecccc
Confidence 156777899999999999988653221 222 23567788999999987 8999999999999974221
Q ss_pred --------cchhhhhhhHHHHHhhcccc
Q 014990 395 --------GIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 395 --------~~~~~a~~~g~~~a~~i~~~ 414 (415)
.....|..||+.||++|...
T Consensus 166 ~~~~~~~~~~a~~A~~~g~~aa~ni~~~ 193 (198)
T d1nhpa1 166 PADTEVNIALATNARKQGRFAVKNLEEP 193 (198)
T ss_dssp GGTEEECCCCHHHHHHHHHHHHHTSSSC
T ss_pred cCCCcccccHHHHHHHHHHHHHHhhCCC
Confidence 23446899999999998753
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=8.1e-17 Score=145.32 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=66.9
Q ss_pred CCceEEEecCeeEEeeccCCccC--------CCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchh
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPV--------NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~--------~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~ 398 (415)
+|+..++++|.||+|||.+|... ..+.+ +..++.++++|+|.+|+. ++|+.|||||+|||+..+ .+..
T Consensus 136 dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l-~~~gv~~~~~G~I~vd~~--~~T~~~gIyA~GDv~~~~-~l~~ 211 (233)
T d1xdia1 136 DGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGL-ERVGIQLGRGNYLTVDRV--SRTLATGIYAAGDCTGLL-PLAS 211 (233)
T ss_dssp TSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCT-TTTTCCCBTTTBCCCCSS--SBCSSTTEEECSGGGTSC-SCHH
T ss_pred CCceeeeecceeeeecCccccccccccccccccccc-chhhhcccCCCcCCcCCC--cccCCCCEEEEEEeCCCc-hhHH
Confidence 56777899999999999998532 12222 356778899999999987 899999999999998655 4555
Q ss_pred hhhhhHHHHHhhccc
Q 014990 399 TNLYCAEETVSSLSL 413 (415)
Q Consensus 399 ~a~~~g~~~a~~i~~ 413 (415)
.|+.+|+.||.+|..
T Consensus 212 ~A~~~g~~aa~~~~g 226 (233)
T d1xdia1 212 VAAMQGRIAMYHALG 226 (233)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 799999999999864
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.68 E-value=3.9e-19 Score=160.84 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=103.8
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC-CCCCCcchHHHHHHHHHHhhc---cC--e
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQH---ER--C 87 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~--~ 87 (415)
.+.+..++|+||||||||+++|..|++.| ++|+|+|+++.+||.+.+. ..+.+.......+.....+.. .+ .
T Consensus 44 ~~~~~~k~VvIIGaGpAGl~aA~~l~~~G--~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (233)
T d1djqa3 44 RQTKNKDSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKES 121 (233)
T ss_dssp CCCSSCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTC
T ss_pred CcccCCceEEEEcccHHHHHHHHHHHHhc--cceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceee
Confidence 44568899999999999999999999999 9999999999999987643 334444444333333332222 12 2
Q ss_pred EEEeceEeceEEEecc-cccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEc
Q 014990 88 SFFGNVTLGSSVSLSE-LRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILG 166 (415)
Q Consensus 88 ~~~~~~~v~~~v~~~~-~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG 166 (415)
.+..+.. .++... ....||+||+|||+ .+..|.+++.+......... .... ......+++|+|||
T Consensus 122 ~~~~~~~---~~~~~~~~~~~~d~vviAtG~-~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~vvViG 187 (233)
T d1djqa3 122 QLALGQK---PMTADDVLQYGADKVIIATGA-SECTLWNELKARESEWAEND-IKGI---------YLIGDAEAPRLIAD 187 (233)
T ss_dssp EEECSCC---CCCHHHHHTSCCSEEEECCCE-ECCHHHHHHHHTTHHHHHTT-CCEE---------EECGGGTSCCCHHH
T ss_pred eeecccc---cccchhhhhhccceeeeccCC-Ccccccccccccccccchhh-hhhh---------hhccccCCceeEec
Confidence 2221111 112222 23479999999998 44444433322111111000 0000 00012578999999
Q ss_pred CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 167 ~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|++|+|+|.+|.+ .+ ++|+++.|++.+
T Consensus 188 gG~~g~e~A~~l~~--------------------~g-~~Vtli~r~~~~ 215 (233)
T d1djqa3 188 ATFTGHRVAREIEE--------------------AN-PQIAIPYKRETI 215 (233)
T ss_dssp HHHHHHHHHHTTTS--------------------SC-TTSCCCCCCCCC
T ss_pred CchHHHHHHHHHHh--------------------cC-CceEEEEecccc
Confidence 99999999999996 34 679999998654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.68 E-value=6.5e-18 Score=152.07 Aligned_cols=113 Identities=52% Similarity=0.903 Sum_probs=96.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceEE
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v 99 (415)
++|+|||||||||+||.+|++.+.+++|+|||+.+.+||.+.+++.+.+.....+.......+...++.+..++.++.++
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 81 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDV 81 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTTB
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCccc
Confidence 58999999999999999999886558999999999999999999977777777877888888888999999999998877
Q ss_pred EecccccccCEEEEccCCCCCCCCCCCCCCCCC
Q 014990 100 SLSELRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (415)
Q Consensus 100 ~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~ 132 (415)
+.......||.|++|||+...+.+.+++.....
T Consensus 82 ~~~~l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~ 114 (230)
T d1cjca2 82 TVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDP 114 (230)
T ss_dssp CHHHHHHHSSEEEECCCCCEECCCCCTTSCCBT
T ss_pred cHHHHHhhhceEEEEeecccccccccccccccc
Confidence 766666789999999999656666666665333
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.65 E-value=2.7e-16 Score=140.36 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=67.1
Q ss_pred CceEEEecCeeEEeeccCCccCCCCc-----ccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhh
Q 014990 328 GEFEDLDCGMVLKSIGYKSVPVNGLP-----FDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLY 402 (415)
Q Consensus 328 g~~~~i~~D~vi~atG~~p~~~~~~~-----~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~ 402 (415)
....++.++.+++++|.+|...+..+ +....|+.++++|++.+|+. ++|+.|||||+|||.+++.. ...|..
T Consensus 136 ~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~vd~~--~~T~vpgiyA~GDv~~g~~l-~~~A~~ 212 (229)
T d3lada1 136 GSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDY--CATSVPGVYAIGDVVRGAML-AHKASE 212 (229)
T ss_dssp SCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBCCCTT--SBCSSTTEEECGGGSSSCCC-HHHHHH
T ss_pred ccceeeecccccccCCcccccccccccccccchHhcCeeecCCCcEEeccc--ccCCCCCEEEEeCCcchHHH-HHHHHH
Confidence 44568899999999998885432211 34567899999999999987 89999999999999887764 447999
Q ss_pred hHHHHHhhccc
Q 014990 403 CAEETVSSLSL 413 (415)
Q Consensus 403 ~g~~~a~~i~~ 413 (415)
+|+.||++|..
T Consensus 213 ~G~~aa~~i~g 223 (229)
T d3lada1 213 EGVVVAERIAG 223 (229)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999998853
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.64 E-value=3e-17 Score=142.43 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=71.0
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccC-CCCcccCCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV-NGLPFDNHK 358 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~-~~~~~~~~~ 358 (415)
..+++++++..+.++. . +.. .+.+ .+++++++|.+|||+|..|+.. ....+....
T Consensus 67 ~~~i~~~~~~~v~~i~--~--~~~--~~~~------------------~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~ 122 (183)
T d1d7ya1 67 APEVEWLLGVTAQSFD--P--QAH--TVAL------------------SDGRTLPYGTLVLATGAAPRAVLANDALARAA 122 (183)
T ss_dssp STTCEEEETCCEEEEE--T--TTT--EEEE------------------TTSCEEECSEEEECCCEEECCEEECCHHHHHT
T ss_pred cCCeEEEEeccccccc--c--ccc--eeEe------------------cCCcEeeeeeEEEEEEEEccccccccccccee
Confidence 4467777777777764 2 221 1222 1223899999999999998652 111222233
Q ss_pred CccccCCCceeeccCCCCCcccCCeeeeeccccCCc---------cchhhhhhhHHHHHhhccc
Q 014990 359 GIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 359 g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---------~~~~~a~~~g~~~a~~i~~ 413 (415)
++.. ++.+.+|++ ++|+.|+|||+|||+..+. .....|+.||+.+|+||+.
T Consensus 123 gl~~--~~~I~vd~~--~~ts~~~IyA~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 123 GLAC--DDGIFVDAY--GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp TCCB--SSSEECCTT--CBCSSTTEEECGGGEEEECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred eEee--CCcEEeccc--eeccccccchhhhhhccceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 3433 356889986 8899999999999974321 1345799999999999974
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=4.9e-16 Score=139.87 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=67.2
Q ss_pred CCceEEEecCeeEEeeccCCccCC-------CCcccCCCCccccC-CCceeeccCCCCCcccCCeeeeeccccCCccchh
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPVN-------GLPFDNHKGIVPNI-RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~~-------~~~~~~~~g~~~~~-~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~ 398 (415)
.++...+.++.+++++|.+|..+. .+ .....++.+++ .|+|.+|+. ++||.|||||+|||..++..++.
T Consensus 137 ~~~~~~i~a~~ivi~~G~~p~~~~i~~~~~~~~-~l~~~gv~l~~~~g~I~vd~~--~~TsvpgIyA~GDv~~g~~~l~~ 213 (235)
T d1h6va1 137 KGKEKVYSAERFLIATGERPRYLGIRDSCTRTI-GLETVGVKINEKTGKIPVTDE--EQTNVPYIYAIGDILEGKLELTP 213 (235)
T ss_dssp TSCEEEEEEEEEEECCCEEECCCSSEEESCTTS-CCTTTTCCCCSSSCCBCCCTT--SBCSSTTEEECGGGBTTSCCCHH
T ss_pred cccccccccccceeecCCCceeEEEeeccceee-ccccceeeeccccCccccCCc--cccCCCCEEEEEeccCCCcccHH
Confidence 455568999999999999985421 11 22455777776 499999997 89999999999999877776776
Q ss_pred hhhhhHHHHHhhccc
Q 014990 399 TNLYCAEETVSSLSL 413 (415)
Q Consensus 399 ~a~~~g~~~a~~i~~ 413 (415)
.|+.+|+.||++|..
T Consensus 214 ~A~~eG~~aa~~~~g 228 (235)
T d1h6va1 214 VAIQAGRLLAQRLYG 228 (235)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 899999999999864
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.62 E-value=2.1e-16 Score=134.74 Aligned_cols=100 Identities=12% Similarity=0.113 Sum_probs=69.9
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKG 359 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g 359 (415)
..+++++++..+..+. . ... +... ++ .++++|.+|||+|..|+. +....|
T Consensus 64 ~~~v~~~~~~~v~~i~--~--~~~---~~~~----------------~~--~~i~~D~li~a~G~~~~~-----~~~~~g 113 (167)
T d1xhca1 64 KRGIEIRLAEEAKLID--R--GRK---VVIT----------------EK--GEVPYDTLVLATGAPNVD-----LARRSG 113 (167)
T ss_dssp HHTEEEECSCCEEEEE--T--TTT---EEEE----------------SS--CEEECSEEEECCCEECCH-----HHHHTT
T ss_pred hccceeeeeccccccc--c--ccc---cccc----------------cc--cccccceeEEEEEecCCc-----hhhhcC
Confidence 4568888877776664 2 322 1111 22 269999999999998743 334455
Q ss_pred ccccCCCceeeccCCCCCcccCCeeeeeccccCCc---cchhhhhhhHHHHHhhccc
Q 014990 360 IVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---GIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 360 ~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---~~~~~a~~~g~~~a~~i~~ 413 (415)
+..+ +.+.+|++ ++|+.|+|||+|||+..+. +....|+.||+.+|++|..
T Consensus 114 l~~~--~~i~v~~~--~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~~i~G 166 (167)
T d1xhca1 114 IHTG--RGILIDDN--FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 166 (167)
T ss_dssp CCBS--SSEECCTT--SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTT
T ss_pred ceeC--Cceeeccc--cEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHHHcCC
Confidence 6554 34778876 8899999999999985442 3345799999999999864
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.57 E-value=2.4e-15 Score=134.92 Aligned_cols=78 Identities=9% Similarity=0.017 Sum_probs=58.7
Q ss_pred EEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhc
Q 014990 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i 411 (415)
...++-++++.|.+++.... ...+..|+.++++|+|.+|++ ++||.|||||+|||.+++. ++..|+.||+.||.+|
T Consensus 146 ~~~~~~~~l~~~~~~~~~~~-~~~e~~g~~~d~~G~I~vd~~--~~TsvpgVyAaGDv~~~~~-l~~~A~~eG~~Aa~~i 221 (229)
T d1ojta1 146 IVAFKNCIIAAGSRAPNGKL-ISAEKAGVAVTDRGFIEVDKQ--MRTNVPHIYAIGDIVGQPM-LAHKAVHEGHVAAENC 221 (229)
T ss_dssp EEEEEEEEECCCEEEECGGG-TTGGGTTCCCCTTSCCCCCTT--SBCSSTTEEECGGGTCSSC-CHHHHHHHHHHHHHHH
T ss_pred ceecceEEEEecccCCcccc-cchhhhCccCCCCCCEEcCCC--ccCCCCCEEEEEecCCCcc-hHHHHHHHHHHHHHHH
Confidence 45555556666655433221 233567899999999999986 8999999999999987665 4557999999999998
Q ss_pred cc
Q 014990 412 SL 413 (415)
Q Consensus 412 ~~ 413 (415)
..
T Consensus 222 ~G 223 (229)
T d1ojta1 222 AG 223 (229)
T ss_dssp TT
T ss_pred cC
Confidence 64
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.55 E-value=9.2e-16 Score=132.61 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=58.4
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc---------cchhhhh
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GIIATNL 401 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---------~~~~~a~ 401 (415)
.++++|.++|++|.+|+. +.+.+....++. .+|.+.+|.+ ++|++|+|||+|||+..+. .....|+
T Consensus 98 ~~i~~d~~i~~~G~~~~~-~~~~~~~~~~~~--~~~~i~Vd~~--~~ts~~~vya~GD~~~~~~~~~~~~~~~~~a~~A~ 172 (185)
T d1q1ra1 98 RALDYDRLVLATGGRPLI-PNCELASAAGLQ--VDNGIVINEH--MQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNAL 172 (185)
T ss_dssp CEEECSEEEECCCEEEEE-ECCHHHHHTTCC--BSSSEECCTT--SBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHH
T ss_pred eEEEeeeeeeeeecccCC-CCchhHHhCCcc--ccCccccCCc--cccchhhhhcchhhhccccccCCcccchhhHHHHH
Confidence 489999999999998843 233333333333 3577889886 8899999999999975332 2456899
Q ss_pred hhHHHHHhhccc
Q 014990 402 YCAEETVSSLSL 413 (415)
Q Consensus 402 ~~g~~~a~~i~~ 413 (415)
.||+.||++|..
T Consensus 173 ~~g~~aa~~i~G 184 (185)
T d1q1ra1 173 EQARKIAAILCG 184 (185)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHccC
Confidence 999999999863
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.4e-14 Score=125.55 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=62.1
Q ss_pred EEecCeeEEeeccCCcc-------CCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhH
Q 014990 332 DLDCGMVLKSIGYKSVP-------VNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCA 404 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~-------~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g 404 (415)
.+.++.+++++|..|.. +.++.+ +..|+.++++|++.+|+. ++|+.|||||+|||.+++. ++..|+.+|
T Consensus 129 ~~~~~~~~iatG~~p~vp~~r~p~~~~l~L-~~~gv~~~~~G~I~vd~~--~~T~~~gvyA~GDv~~~~~-l~~~A~~~G 204 (221)
T d3grsa1 129 KYTAPHILIATGGMPSTPHERVPNTKDLSL-NKLGIQTDDKGHIIVDEF--QNTNVKGIYAVGDVCGKAL-LTPVAIAAG 204 (221)
T ss_dssp EEECSCEEECCCEEECCCCTEEESCTTTTG-GGTTCCBCTTSCBCCCTT--CBCSSTTEEECGGGGTSSC-CHHHHHHHH
T ss_pred ccccceeEEecCccccCCCccccCCCCcCc-hhcCcEECCCccEEeCCC--ccccCCcEEEEEEccCCcC-cHHHHHHHH
Confidence 78889999999977632 122222 456788999999999997 8999999999999986544 455799999
Q ss_pred HHHHhhccc
Q 014990 405 EETVSSLSL 413 (415)
Q Consensus 405 ~~~a~~i~~ 413 (415)
+.||++|..
T Consensus 205 ~~aa~~~~~ 213 (221)
T d3grsa1 205 RKLAHRLFE 213 (221)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 999999864
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.53 E-value=1.6e-14 Score=130.28 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=65.9
Q ss_pred CCceEEEecCeeEEeeccCCccCC-------CCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhh
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPVN-------GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIAT 399 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~~-------~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~ 399 (415)
.+..+++++|.|++++|.+|.... .+.+ +..++.++++|+|.+|++ ++|+.|||||+|||.+++. ++..
T Consensus 144 ~~~~e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l-~~~gv~~~~~G~I~vd~~--~~Ts~~~iyA~GDv~~~~~-~~~~ 219 (240)
T d1feca1 144 SAVLETLDTEYILLATGSWPQHLGIEVPRSQTLQL-EKAGVEVAKNGAIKVDAY--SKTNVDNIYAIGDVTDRVM-LTPV 219 (240)
T ss_dssp SCEEEEEEEEEEEECCCEEECCCCSBEESCTTSCG-GGGTCCBCTTSCBCCCTT--CBCSSTTEEECGGGGCSCC-CHHH
T ss_pred ccceEEEecceEEEecCCceeEccccccccCCCCc-cccCeEECCCCcEEcCcc--cCcCCCCEEEEEECCCCcc-chhh
Confidence 345568999999999999985421 1112 355788999999999987 8999999999999987665 4447
Q ss_pred hhhhHHHHHhhccc
Q 014990 400 NLYCAEETVSSLSL 413 (415)
Q Consensus 400 a~~~g~~~a~~i~~ 413 (415)
|+.||+.||.+|..
T Consensus 220 A~~eg~~aa~~~~~ 233 (240)
T d1feca1 220 AINEGAAFVDTVFA 233 (240)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=4.2e-15 Score=133.18 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=59.1
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.+..+.++|.+|+. ..+ ..+..|+.++++|++.+|.+ ++|+.|+|||+||+..++. +...|+.+|..||++|..
T Consensus 154 ~~~~~~~~G~~p~~-~~l-~l~~~gv~~~~~g~i~vd~~--~~T~~~~v~A~GD~~~g~~-l~~~a~~~G~~aa~~i~~ 227 (233)
T d1v59a1 154 GSEVTPFVGRRPYI-AGL-GAEKIGLEVDKRGRLVIDDQ--FNSKFPHIKVVGDVTFGPM-LAHKAEEEGIAAVEMLKT 227 (233)
T ss_dssp CEEECCCSCEEECC-TTS-CTTTTTCCBCTTSCBCCCTT--SBCSSTTEEECGGGSSSCC-CHHHHHHHHHHHHHHHHH
T ss_pred ccccceecccccCC-CCc-CchhcCeEEcCCCcEEECCe--EecCCCCEEEEcCCcccHH-HHHHHHHHHHHHHHHHcc
Confidence 34455688988864 333 23567888999999999987 8999999999999987776 455799999999999863
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.50 E-value=1.6e-13 Score=121.74 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=66.5
Q ss_pred CceEEEecCeeEEeeccCCc----cCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhh
Q 014990 328 GEFEDLDCGMVLKSIGYKSV----PVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYC 403 (415)
Q Consensus 328 g~~~~i~~D~vi~atG~~p~----~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~ 403 (415)
.....+.+|.||+|||.+|. .+..+. .+..|+.++++|++.+|+. ++|+.|||||+|||.+++..+. .|+.+
T Consensus 130 ~~~~~~~a~~VIiATGs~~~gr~p~~~~l~-l~~~gv~~~~~G~i~vd~~--~~T~v~gi~A~GDv~~g~~l~~-~A~~~ 205 (221)
T d1dxla1 130 GENTVVKGKHIIIATGSDVKGRTPFTSGLN-LDKIGVETDKLGRILVNER--FSTNVSGVYAIGDVIPGPMLAH-KAEED 205 (221)
T ss_dssp SCCEEEECSEEEECCCEEECCEEECCTTSC-CTTTTCCBCSSSCBCCCTT--CBCSSTTEEECSTTSSSCCCHH-HHHHH
T ss_pred ccccccccceEEEeECCCccCccccCCCCC-hHhcCceEcCCCcEEeCCC--cccCCCCEEEEeccCCCcccHH-HHHHH
Confidence 44458999999999996542 123332 3567899999999999987 8999999999999998776544 79999
Q ss_pred HHHHHhhcccc
Q 014990 404 AEETVSSLSLI 414 (415)
Q Consensus 404 g~~~a~~i~~~ 414 (415)
|+.||++|...
T Consensus 206 g~~aa~~i~g~ 216 (221)
T d1dxla1 206 GVACVEYLAGK 216 (221)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHcCC
Confidence 99999998753
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1e-14 Score=129.51 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=75.8
Q ss_pred CCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCC
Q 014990 278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH 357 (415)
Q Consensus 278 ~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~ 357 (415)
....||++++++.++++. . ++. .|+++ +| ++++||.+|||+|..|+.+ ++...
T Consensus 93 ~~~~gI~~~~g~~V~~id--~-~~~---~V~l~----------------dG--~~i~~d~lViAtG~~~~~~---~l~~~ 145 (213)
T d1m6ia1 93 IENGGVAVLTGKKVVQLD--V-RDN---MVKLN----------------DG--SQITYEKCLIATGGTEPNV---ELAKT 145 (213)
T ss_dssp STTCEEEEEETCCEEEEE--G-GGT---EEEET----------------TS--CEEEEEEEEECCCEEEECC---TTHHH
T ss_pred HHHCCeEEEeCCEEEEee--c-cCc---eeeec----------------cc--eeeccceEEEeeeeecchh---hhhhc
Confidence 347889999999988885 3 222 23332 23 3799999999999887653 23334
Q ss_pred CCccc-cCCCceeeccCCCCCcccCCeeeeeccccCCc--------cchhhhhhhHHHHHhhcccc
Q 014990 358 KGIVP-NIRGRVLKNISGDSSQVENGLYVCGWLKRGPT--------GIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 358 ~g~~~-~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~--------~~~~~a~~~g~~~a~~i~~~ 414 (415)
.++.+ ++.|.+.+|++ ++++ |+|||+|||+..+. .....|+.||+.||+||...
T Consensus 146 ~gl~~~~~~~~i~vd~~--l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~ 208 (213)
T d1m6ia1 146 GGLEIDSDFGGFRVNAE--LQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGA 208 (213)
T ss_dssp HTCCBCTTTCSEECCTT--CEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSC
T ss_pred cchhhhhhhhhhhhhHh--cCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCC
Confidence 45554 44588999987 6777 99999999974221 23347999999999998753
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.49 E-value=1.7e-13 Score=125.27 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=65.3
Q ss_pred EEEecCeeEEeeccCCccCCCCccc-------CCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhh
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFD-------NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYC 403 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~-------~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~ 403 (415)
++++||.||+|+|.+|+. +.++.. +..|+.++++|+|.||++ ++|+.|||||+|||.++|.. +..|+.|
T Consensus 170 ~~i~ad~viiAtG~~P~~-~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~--~~Ts~~~IyA~GDv~~~~~l-~~~A~~~ 245 (261)
T d1mo9a1 170 KVFKAKNLILAVGAGPGT-LDVPEQPRSAELAKILGLDLGPKGEVLVNEY--LQTSVPNVYAVGDLIGGPME-MFKARKS 245 (261)
T ss_dssp EEEEBSCEEECCCEECCC-CCSTCEECCHHHHHHHTCCBCTTSCBCCCTT--SBCSSTTEEECGGGGCSSCS-HHHHHHH
T ss_pred ceEeeeeeeeccCCCCCc-CcccccccccccccceeeeeccCCEEEeCCC--cccCCCCEEEEEEeCCCccc-HHHHHHH
Confidence 489999999999999965 233321 234788899999999987 89999999999999877764 4479999
Q ss_pred HHHHHhhccc
Q 014990 404 AEETVSSLSL 413 (415)
Q Consensus 404 g~~~a~~i~~ 413 (415)
|+.||.+|..
T Consensus 246 G~~aa~~i~G 255 (261)
T d1mo9a1 246 GCYAARNVMG 255 (261)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 9999999874
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.46 E-value=8.9e-13 Score=116.81 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=63.9
Q ss_pred CceEEEecCeeEEee--------ccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhh
Q 014990 328 GEFEDLDCGMVLKSI--------GYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIAT 399 (415)
Q Consensus 328 g~~~~i~~D~vi~at--------G~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~ 399 (415)
.....+.+|.+|+++ |.+|+. ..+ ..+..|+.++++|+|.+|++ ++|+.|||||+|||.+++.. +..
T Consensus 127 ~~~~~~~~~~iiIa~g~~p~~~~G~~p~~-~~l-~l~~~gv~~~~~G~I~vd~~--~~T~~~gvyA~GDv~~~~~~-~~~ 201 (223)
T d1ebda1 127 DSAQTYTFKNAIIATGSRPIELVGRRPNT-DEL-GLEQIGIKMTNRGLIEVDQQ--CRTSVPNIFAIGDIVPGPAL-AHK 201 (223)
T ss_dssp TEEEEEECSEEEECCCEEECCBSCEEESC-SSS-STTTTTCCBCTTSCBCCCTT--CBCSSTTEEECGGGSSSCCC-HHH
T ss_pred ccceEEecccEEEEcCCCccccccceecC-CCC-ChHhcCceECCCCCEeECCC--CCCCCCCEEEEeccCCCccc-HHH
Confidence 344578999999986 555543 222 23567889999999999986 89999999999999977765 447
Q ss_pred hhhhHHHHHhhccc
Q 014990 400 NLYCAEETVSSLSL 413 (415)
Q Consensus 400 a~~~g~~~a~~i~~ 413 (415)
|+.||+.||++|..
T Consensus 202 A~~~g~~aa~~i~g 215 (223)
T d1ebda1 202 ASYEGKVAAEAIAG 215 (223)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.46 E-value=1.8e-13 Score=117.17 Aligned_cols=83 Identities=10% Similarity=0.068 Sum_probs=55.8
Q ss_pred eEEEecCeeEEeeccCCccCCCCc-----ccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC--ccchhhhhh
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLP-----FDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP--TGIIATNLY 402 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~-----~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~--~~~~~~a~~ 402 (415)
++++++|.+|||||.+|+.. .++ +....+...+ .++..+++.....++.|+||++||+.... +.....|..
T Consensus 92 ~~~i~~D~li~atG~~~~~~-~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~iGd~~~~~~~p~~~~~A~~ 169 (186)
T d1fcda1 92 GAEFGYDRCVVAPGIELIYD-KIEQRAGKIAQIAGLTND-AGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANS 169 (186)
T ss_dssp SCEEECSEEEECCCEEECCT-TSTEEECHHHHHHTCCCT-TSSEEBCSSSCBBSSSTTEEECTTSEECTTCCSSHHHHHH
T ss_pred ceeeccceEEEEeccccchh-hhhhhhhhheeccCcccc-cccccceeeeeecccccCceEeccccccCCCCchHhHHHH
Confidence 34899999999999998651 111 1111122223 45555555432668999999999998542 233457899
Q ss_pred hHHHHHhhcccc
Q 014990 403 CAEETVSSLSLI 414 (415)
Q Consensus 403 ~g~~~a~~i~~~ 414 (415)
||+.+|.+|..+
T Consensus 170 q~~~~A~ni~~~ 181 (186)
T d1fcda1 170 QGKVAAAAVVVL 181 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999754
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.42 E-value=2.4e-13 Score=118.40 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=61.5
Q ss_pred EEEecCeeEEeeccCCccC-CCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHh
Q 014990 331 EDLDCGMVLKSIGYKSVPV-NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVS 409 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~-~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~ 409 (415)
.+..+|.+++++|...... +...+. ..++.++++|++.+++.. ++|+.|||||+|||.+.+......|+.+|+.||.
T Consensus 106 ~~~~~~~~~~a~g~~~~g~~p~~~~~-~~~veld~~G~i~~~~~~-~~Ts~~GV~a~GDv~~~~~r~~v~A~g~G~~aA~ 183 (192)
T d1vdca1 106 KAILADAVILAIGAVAKGHEPATKFL-DGGVELDSDGYVVTKPGT-TQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAAL 183 (192)
T ss_dssp EEEEEEEEEECCCEEECCEEESCGGG-TTSSCBCTTSCBCCCTTS-CBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHH
T ss_pred eeeeeeeEEEEeeeeecccCchHHHh-cCceeecCCCeEEeCCCc-eEecCCCEEEeeecCCcccceEEEEEechHHHHH
Confidence 3688999999999653210 111222 346788999999999755 8999999999999987665434479999999999
Q ss_pred hcccc
Q 014990 410 SLSLI 414 (415)
Q Consensus 410 ~i~~~ 414 (415)
.+.++
T Consensus 184 ~~~~y 188 (192)
T d1vdca1 184 DAEHY 188 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.3e-14 Score=128.84 Aligned_cols=151 Identities=11% Similarity=0.147 Sum_probs=90.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCC---------------------------c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDH---------------------------P 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~---------------------------~ 69 (415)
++|||+||||||||++||.++++.| .+|+|||++. +||.. ..+..|.+ .
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G--~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 77 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYG--QKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF 77 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence 4689999999999999999999999 9999999864 66532 11110100 0
Q ss_pred chHHH-----------HHHHHHHhhccCeEEEeceEece---EEEecccccccCEEEEccCCCCCCCCCCCCCCCCC---
Q 014990 70 ETKIV-----------INQFSRVVQHERCSFFGNVTLGS---SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIG--- 132 (415)
Q Consensus 70 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~---~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~--- 132 (415)
....+ ......++++.++++........ ..........++.+++|||+ .|..|++|+.+.-+
T Consensus 78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~-~p~ip~ip~~~~l~l~~ 156 (217)
T d1gesa1 78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGG-RPSHPREPANDNINLEA 156 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCE-EECCCEEESCTTSCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCc-cccCCCCCCcCCccccc
Confidence 01111 11223445566777665443211 22233334578899999999 78888887665222
Q ss_pred --eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhc
Q 014990 133 --VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 133 --v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
+.....-....+.. .....++|.|||+|.+|+|+|..+.+
T Consensus 157 ~gv~~~~~~~i~~d~~--------~~t~~~~i~~iG~g~~g~ela~~~~~ 198 (217)
T d1gesa1 157 AGVKTNEKGYIVVDKY--------QNTNIEGIYAVGDNTGAVELTPVAVA 198 (217)
T ss_dssp HTCCBCTTSCBCCCTT--------SBCSSTTEEECSGGGTSCCCHHHHHH
T ss_pred ccEEEcCCccEeeCch--------hccCCCcEEEECCCccHHHHHHHHHH
Confidence 11111000000000 01135689999999999999887764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.38 E-value=2.8e-12 Score=102.85 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=83.9
Q ss_pred CCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceE
Q 014990 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (415)
Q Consensus 127 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (415)
|.+.++++++..+.+.+.. .++++|+|||+|++|+|+|..|.+ ...+|
T Consensus 1 G~~~~gv~~~~~~~~~l~~-----------~~~~~vvVvGgG~ig~E~A~~l~~---------------------~g~~v 48 (121)
T d1mo9a2 1 GVNAKGVFDHATLVEELDY-----------EPGSTVVVVGGSKTAVEYGCFFNA---------------------TGRRT 48 (121)
T ss_dssp TTTSBTEEEHHHHHHHCCS-----------CCCSEEEEECCSHHHHHHHHHHHH---------------------TTCEE
T ss_pred CCCCCCEEeHHHHHHHHhh-----------CCCCEEEEECCCHHHHHHHHHHHh---------------------cchhh
Confidence 4567889988777654432 268999999999999999999986 34689
Q ss_pred EEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEE
Q 014990 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (415)
Q Consensus 207 ~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 286 (415)
+++.|++.+...+. +++ .+.+.+.+. +++|+++
T Consensus 49 t~i~~~~~~l~~~d-~~~---------------------------------~~~~~~~l~-------------~~gI~v~ 81 (121)
T d1mo9a2 49 VMLVRTEPLKLIKD-NET---------------------------------RAYVLDRMK-------------EQGMEII 81 (121)
T ss_dssp EEECSSCTTTTCCS-HHH---------------------------------HHHHHHHHH-------------HTTCEEE
T ss_pred eEeeccchhhcccc-cch---------------------------------hhhhhhhhh-------------ccccEEE
Confidence 99999876532222 111 222223332 5689999
Q ss_pred eccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeec
Q 014990 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 287 ~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
++..+.++. ...++.+..+.... .+++++++||.||||+|
T Consensus 82 ~~~~v~~i~--~~~~~~~~~~~~~~---------------~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 82 SGSNVTRIE--EDANGRVQAVVAMT---------------PNGEMRIETDFVFLGLG 121 (121)
T ss_dssp SSCEEEEEE--ECTTSBEEEEEEEE---------------TTEEEEEECSCEEECCC
T ss_pred cCCEEEEEE--ecCCceEEEEEEEe---------------CCCCEEEEcCEEEEEEC
Confidence 999999997 32344444343322 45667899999999998
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.35 E-value=1.4e-12 Score=123.26 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCC-------------------------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA------------------------------- 65 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~------------------------------- 65 (415)
++.++|+|||||+|||+||..|++.+...+|+||||++.+||.+.+...
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 81 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 81 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccc
Confidence 4678999999999999999999988745699999999999987543210
Q ss_pred -------------------------CCCcchHHHHHHHHHHhhccCeEEEeceEece--------EEEecccc-------
Q 014990 66 -------------------------PDHPETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSELR------- 105 (415)
Q Consensus 66 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~~~------- 105 (415)
+.++...++.+++...++..+..+..++.|.. .|+..+..
T Consensus 82 ~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~ 161 (335)
T d2gv8a1 82 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISK 161 (335)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEE
T ss_pred cchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEE
Confidence 01112235666777777777777787876622 23333221
Q ss_pred cccCEEEEccCC-CCCCCCCCCCCC
Q 014990 106 QLYHVVVLAYGA-ESDRALGIPGED 129 (415)
Q Consensus 106 ~~~d~lvlAtG~-~~~~~~~i~g~~ 129 (415)
..||+||+|||. ..|..|.+++..
T Consensus 162 ~~~d~VI~AtG~~s~p~~~~~~~~~ 186 (335)
T d2gv8a1 162 DIFDAVSICNGHYEVPYTGYLYSVP 186 (335)
T ss_dssp EEESEEEECCCSSSSBCCCBCCCCC
T ss_pred EEeeEEEEcccccccceecccccCC
Confidence 248999999997 346666554433
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.29 E-value=3.5e-13 Score=119.67 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=61.7
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCc----cccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHH
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI----VPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAE 405 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~----~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~ 405 (415)
..++.+|.+|+|||.+|..++..+.....+. ...++|.+.+|+. ++|+.|||||+|||..++. +...|+.+|.
T Consensus 130 ~~~i~a~~viiAtG~~p~~lp~~~~~~~~~~~~~~~~~~~g~i~vd~~--~~T~~~~I~A~GDv~~~~~-l~~~a~~~g~ 206 (220)
T d1lvla1 130 GQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDER--CQTSMHNVWAIGDVAGEPM-LAHRAMAQGE 206 (220)
T ss_dssp TEEEECSEEEECCCEEECCBTEEECCSSSSGGGSCCCEETTEECCCTT--CBCSSTTEEECGGGGCSSC-CHHHHHHHHH
T ss_pred ceeEeeceeeEcCCCCcccccccccccCCcceeeehhhcCCcccccch--hhcCCCCEEEEEEeCCccc-chhhhhhhHH
Confidence 3489999999999999866543322221111 1223688999987 8999999999999987665 5558999999
Q ss_pred HHHhhcccc
Q 014990 406 ETVSSLSLI 414 (415)
Q Consensus 406 ~~a~~i~~~ 414 (415)
.||++|...
T Consensus 207 ~~a~~i~G~ 215 (220)
T d1lvla1 207 MVAEIIAGK 215 (220)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999998754
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=3.2e-12 Score=110.78 Aligned_cols=81 Identities=7% Similarity=-0.022 Sum_probs=55.0
Q ss_pred EEecCeeEEeeccCCccC-CCCcccCCCCccccCCCceeeccCC---CCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 332 DLDCGMVLKSIGYKSVPV-NGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~-~~~~~~~~~g~~~~~~G~i~v~~~~---~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
.++++.+++++|..+... +...+... .+.+ ++|++.+++.. .++|+.||||++|||+..+....-.|+.+|+.|
T Consensus 102 ~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~-~~g~i~~~~~~~~~~~~T~v~gV~aaGDv~~~~~~q~i~Aag~G~~A 179 (190)
T d1trba1 102 EYTCDALIIATGASARYHSPNTAIFEG-QLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMA 179 (190)
T ss_dssp EEEEEEEEECCCEEECCEEESCGGGTT-TSCE-ETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHH
T ss_pred eEeeeeeeeecceeeeeecccceeecc-eEec-CCcEEEEecCCcccccccccCeEEEeEEecCcceeEEEEEeccHHHH
Confidence 788999999999876431 11112111 1223 35888887531 158999999999999876643343789999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.++.++
T Consensus 180 A~~a~~y 186 (190)
T d1trba1 180 ALDAERY 186 (190)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877653
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.29 E-value=2.9e-12 Score=102.65 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCeeechhhH--HHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhh
Q 014990 122 ALGIPGEDLIGVHSAREFV--WWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (415)
Q Consensus 122 ~~~i~g~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~ 199 (415)
.|++||.+.+ +++..... ..+... +.++++|+|||+|++|+|+|..|.+
T Consensus 1 iP~ipG~~~~-v~~lrtl~Da~~l~~~---------~~~~~~vvIIGgG~iG~E~A~~l~~------------------- 51 (121)
T d1d7ya2 1 LPTLQGATMP-VHTLRTLEDARRIQAG---------LRPQSRLLIVGGGVIGLELAATART------------------- 51 (121)
T ss_dssp CGGGTTCSSC-EEECCSHHHHHHHHHH---------CCTTCEEEEECCSHHHHHHHHHHHH-------------------
T ss_pred CccCCCCCCC-EEEeCCHHHHHHHHHh---------hhcCCeEEEECcchhHHHHHHHhhc-------------------
Confidence 3788998864 66543322 222211 2367999999999999999999996
Q ss_pred cCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCC
Q 014990 200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG 279 (415)
Q Consensus 200 ~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 279 (415)
. ..+|+++.|++.+.....++++.+ .+.+.+.
T Consensus 52 -~-g~~Vtli~~~~~~l~~~~~~~~~~---------------------------------~~~~~l~------------- 83 (121)
T d1d7ya2 52 -A-GVHVSLVETQPRLMSRAAPATLAD---------------------------------FVARYHA------------- 83 (121)
T ss_dssp -T-TCEEEEEESSSSTTTTTSCHHHHH---------------------------------HHHHHHH-------------
T ss_pred -c-cceEEEEeeccccccccCCHHHHH---------------------------------HHHHHHH-------------
Confidence 3 369999999987643333322222 2223332
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeec
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
++||+++++..+.++. ++ .++++ +| ++++||+||+|+|
T Consensus 84 ~~GV~i~~~~~v~~~~-----~~---~v~l~----------------dg--~~i~~D~vi~a~G 121 (121)
T d1d7ya2 84 AQGVDLRFERSVTGSV-----DG---VVLLD----------------DG--TRIAADMVVVGIG 121 (121)
T ss_dssp TTTCEEEESCCEEEEE-----TT---EEEET----------------TS--CEEECSEEEECSC
T ss_pred HCCcEEEeCCEEEEEe-----CC---EEEEC----------------CC--CEEECCEEEEeeC
Confidence 6789999999888775 33 23332 23 3799999999998
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.28 E-value=1e-12 Score=114.08 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=72.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
.+++|+||||||+||+||.+|+++| + +|+|||+.+.+++.+.+.. +......................+.....++
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G--~~~V~v~E~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLS 79 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCC--CCeEEEEEecCcccchhhhhc-cccccccccccchhhhhhccceeEEeeEEec
Confidence 5789999999999999999999999 8 5999999999999988777 4444555555555555555567777766664
Q ss_pred eEE-Eeccc-ccccCEEEEccCC
Q 014990 97 SSV-SLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~~v-~~~~~-~~~~d~lvlAtG~ 117 (415)
... ..... ...++.+++|+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~ia~g~ 102 (196)
T d1gtea4 80 ENEITLNTLKEEGYKAAFIGIGL 102 (196)
T ss_dssp TTSBCHHHHHHTTCCEEEECCCC
T ss_pred cceeeeehhhccccceeeEEecc
Confidence 321 11222 2368999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.26 E-value=3.5e-12 Score=118.58 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=83.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCC---------------------------CC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP---------------------------DH 68 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~---------------------------~~ 68 (415)
+++..+|||||||++||++|.+|++.| .+|+|||+.+.+||.+.+...| .+
T Consensus 4 p~~~~dV~IIGAG~sGl~~a~~L~~~G--~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~ 81 (298)
T d1w4xa1 4 PPEEVDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERY 81 (298)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred CCCCCCEEEECccHHHHHHHHHHHhCC--CCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCcccc
Confidence 347889999999999999999999999 9999999999999976432111 11
Q ss_pred cchHHHHHHHHHHhhccCe--EEEeceEece----------EEEecccc-cccCEEEEccCC-CCCCCCCCCCCC
Q 014990 69 PETKIVINQFSRVVQHERC--SFFGNVTLGS----------SVSLSELR-QLYHVVVLAYGA-ESDRALGIPGED 129 (415)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~----------~v~~~~~~-~~~d~lvlAtG~-~~~~~~~i~g~~ 129 (415)
+...++.+++..+++++++ .+.+++.|.. .++..+.. ..+|+||+|||. ..|..|.+++.+
T Consensus 82 p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~ 156 (298)
T d1w4xa1 82 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKID 156 (298)
T ss_dssp CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred CccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccc
Confidence 2334677888888888877 4777776632 23333332 468999999996 457777777665
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.20 E-value=9.9e-11 Score=97.45 Aligned_cols=138 Identities=22% Similarity=0.354 Sum_probs=91.6
Q ss_pred CCCeeechhhHHHhcCC--CCCCCCCCCC-CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceE
Q 014990 130 LIGVHSAREFVWWYNGH--PDGKNLSPDL-KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (415)
Q Consensus 130 ~~~v~~~~~~~~~~~~~--~~~~~~~~~~-~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (415)
..+++.+.+|+.+.+.. .........+ ..+++|+|||||++|+|+|..+.+ .+++.|
T Consensus 13 ~~G~~~a~dfL~~~~~~~~~~~~~~~~~~p~~~~kVvVIGGGdtA~D~A~~a~r--------------------~GA~~V 72 (153)
T d1gtea3 13 DQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALR--------------------CGARRV 72 (153)
T ss_dssp TTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHH--------------------TTCSEE
T ss_pred cCCEEEHHHHHHHHHhccccCCCcccCccccCCCEEEEECCChhHHHHHHHHHH--------------------cCCcce
Confidence 45899999998765321 1111111112 247789999999999999999886 688999
Q ss_pred EEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEE
Q 014990 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (415)
Q Consensus 207 ~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 286 (415)
+++.|++.........++. .+. ..++.++
T Consensus 73 ~vi~rr~~~~~~a~~~~~~-------------------------------------~a~--------------~~~~~~~ 101 (153)
T d1gtea3 73 FLVFRKGFVNIRAVPEEVE-------------------------------------LAK--------------EEKCEFL 101 (153)
T ss_dssp EEECSSCGGGCCSCHHHHH-------------------------------------HHH--------------HTTCEEE
T ss_pred eEEEeCChhhhccchhhee-------------------------------------ecc--------------cccceeE
Confidence 9999987543222222111 111 4467888
Q ss_pred eccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 287 ~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
+...+.++. . .++.+..+....... +++|.+... +|+..+++||.||+|+|.
T Consensus 102 ~~~~~~ei~--~-~~~~~~~v~~~~~e~--d~~G~~~~~-~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 102 PFLSPRKVI--V-KGGRIVAVQFVRTEQ--DETGKWNED-EDQIVHLKADVVISAFGS 153 (153)
T ss_dssp CSEEEEEEE--E-ETTEEEEEEEEEEEE--CTTSCEEEE-EEEEEEEECSEEEECSCE
T ss_pred eccccEEEE--e-cCCceEEEEEEEeeE--CCCCCEecC-CCCEEEEECCEEEECcCc
Confidence 888888887 5 466676776655433 345654433 577789999999999983
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.18 E-value=9.9e-11 Score=92.94 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcC
Q 014990 122 ALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGS 201 (415)
Q Consensus 122 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 201 (415)
.|++||.+ .+.++.+++. +..+++|+|||||++|+|+|..|++ .
T Consensus 1 ~P~IpG~e--~~~ts~~~~~--------------l~~p~~v~IiGgG~iG~E~A~~l~~--------------------~ 44 (117)
T d1onfa2 1 FPPVKGIE--NTISSDEFFN--------------IKESKKIGIVGSGYIAVELINVIKR--------------------L 44 (117)
T ss_dssp CCSCTTGG--GCEEHHHHTT--------------CCCCSEEEEECCSHHHHHHHHHHHT--------------------T
T ss_pred CcccCCHh--HcCchhHHhc--------------cCCCCEEEEECCchHHHHHHHHHHh--------------------c
Confidence 37899975 4556555442 2357999999999999999999986 3
Q ss_pred CcceEEEEeecCccc
Q 014990 202 SIRKVYLVGRRGPVQ 216 (415)
Q Consensus 202 ~~~~v~l~~r~~~~~ 216 (415)
| .+|+++.|++.+.
T Consensus 45 g-~~Vtlv~~~~~il 58 (117)
T d1onfa2 45 G-IDSYIFARGNRIL 58 (117)
T ss_dssp T-CEEEEECSSSSSC
T ss_pred c-ccceeeehhcccc
Confidence 4 5899999997664
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.17 E-value=1.1e-10 Score=93.03 Aligned_cols=116 Identities=10% Similarity=0.157 Sum_probs=78.2
Q ss_pred CCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEE
Q 014990 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (415)
Q Consensus 128 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (415)
.+.+.++++.+.++ . -..+++++|||+|++|||+|..+++ .| .+|+
T Consensus 4 ~d~~~v~~s~~~l~----l---------~~~p~~i~IiG~G~ig~E~A~~l~~--------------------~G-~~Vt 49 (119)
T d3lada2 4 VDQDVIVDSTGALD----F---------QNVPGKLGVIGAGVIGLELGSVWAR--------------------LG-AEVT 49 (119)
T ss_dssp CCSSSEEEHHHHTS----C---------SSCCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEE
T ss_pred CCCCEEEchhHhhC----c---------ccCCCeEEEECCChHHHHHHHHHHH--------------------cC-CceE
Confidence 34567888766552 1 1147999999999999999999996 45 5899
Q ss_pred EEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEe
Q 014990 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (415)
Q Consensus 208 l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 287 (415)
++.|+..+.. ..++++.+ .+.+.+. ++||++++
T Consensus 50 iv~~~~~ll~-~~d~ei~~---------------------------------~l~~~l~-------------~~Gv~i~~ 82 (119)
T d3lada2 50 VLEAMDKFLP-AVDEQVAK---------------------------------EAQKILT-------------KQGLKILL 82 (119)
T ss_dssp EEESSSSSST-TSCHHHHH---------------------------------HHHHHHH-------------HTTEEEEE
T ss_pred EEEeecccCC-cccchhHH---------------------------------HHHHHHH-------------hcCceeec
Confidence 9999976532 22222211 1222222 66899999
Q ss_pred ccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeec
Q 014990 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 288 ~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
++.++++. . .++.+ .+++.+ .+..++++||.||+|+|
T Consensus 83 ~~~v~~i~--~-~~~~v-~v~~~~---------------~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 83 GARVTGTE--V-KNKQV-TVKFVD---------------AEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp TCEEEEEE--E-CSSCE-EEEEES---------------SSEEEEEEESEEEECSC
T ss_pred CcEEEEEE--E-eCCEE-EEEEEE---------------CCCCEEEECCEEEEeeC
Confidence 99999987 4 23322 243332 34456899999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.17 E-value=1.5e-10 Score=92.71 Aligned_cols=121 Identities=17% Similarity=0.308 Sum_probs=79.3
Q ss_pred CCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC
Q 014990 125 IPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (415)
Q Consensus 125 i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (415)
|||.+.+++++.....+ .+.... ....+++|+|||+|++|+|+|..|.+ .|
T Consensus 1 IPG~d~~~v~~~~~~~da~~i~~~~-------~~~~~k~vvViGgG~iG~E~A~~l~~--------------------~g 53 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKLKQKT-------VDPEVNNVVVIGSGYIGIEAAEAFAK--------------------AG 53 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHHHHHH-------TCTTCCEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CcCCCCCCeEEeCCHHHHHHHHHHh-------hccCCCEEEEECChHHHHHHHHHhhc--------------------cc
Confidence 58888888887543322 121110 01257899999999999999999996 34
Q ss_pred cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCcee
Q 014990 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (415)
Q Consensus 203 ~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (415)
.+||++.+++.......++++.+ .+.+.+. ++|
T Consensus 54 -~~Vtlie~~~~~l~~~~d~~~~~---------------------------------~~~~~l~-------------~~g 86 (123)
T d1nhpa2 54 -KKVTVIDILDRPLGVYLDKEFTD---------------------------------VLTEEME-------------ANN 86 (123)
T ss_dssp -CEEEEEESSSSTTTTTCCHHHHH---------------------------------HHHHHHH-------------TTT
T ss_pred -eEEEEEEecCcccccccchhhHH---------------------------------HHHHHhh-------------cCC
Confidence 58999999876543333322211 1222222 678
Q ss_pred EEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEee
Q 014990 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSI 342 (415)
Q Consensus 283 v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~at 342 (415)
|++++++.+.++. . ++.+..+ +. +|+ +++||+||+|+
T Consensus 87 v~~~~~~~v~~i~--~--~~~~~~v-~~----------------dg~--~i~~D~vi~aI 123 (123)
T d1nhpa2 87 ITIATGETVERYE--G--DGRVQKV-VT----------------DKN--AYDADLVVVAV 123 (123)
T ss_dssp EEEEESCCEEEEE--C--SSBCCEE-EE----------------SSC--EEECSEEEECS
T ss_pred eEEEeCceEEEEE--c--CCCEEEE-Ee----------------CCC--EEECCEEEEEC
Confidence 9999999999997 3 5555443 22 222 79999999985
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.17 E-value=2.5e-11 Score=97.28 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHH
Q 014990 120 DRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197 (415)
Q Consensus 120 ~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~ 197 (415)
|+.|++||.+ .+++...+.+ .+... +..+++|+|||||++|+|+|..|.+
T Consensus 2 ~r~p~ipG~e--~~~t~~~~~d~~~l~~~---------~~~~~~vvIiGgG~iG~E~A~~l~~----------------- 53 (122)
T d1xhca2 2 AREPQIKGKE--YLLTLRTIFDADRIKES---------IENSGEAIIIGGGFIGLELAGNLAE----------------- 53 (122)
T ss_dssp ECCCCSBTGG--GEECCCSHHHHHHHHHH---------HHHHSEEEEEECSHHHHHHHHHHHH-----------------
T ss_pred CCCcCCCCcc--ceEccCCHHHHHHHHHH---------hhcCCcEEEECCcHHHHHHHHHhhc-----------------
Confidence 6788999975 3444433221 11110 1246899999999999999999996
Q ss_pred hhcCCcceEEEEeecCcc
Q 014990 198 LEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 198 ~~~~~~~~v~l~~r~~~~ 215 (415)
.| .+|+++.|++.+
T Consensus 54 ---~g-~~Vtlv~~~~~l 67 (122)
T d1xhca2 54 ---AG-YHVKLIHRGAMF 67 (122)
T ss_dssp ---TT-CEEEEECSSSCC
T ss_pred ---cc-ceEEEEeccccc
Confidence 34 589999998764
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.17 E-value=2.7e-12 Score=116.90 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
|||+||||||||++||.++++.| .+|+|||+.. +||
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G--~~V~liE~~~-~GG 37 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHN--AKVALVEKSR-LGG 37 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSS-TTH
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCC-CCC
Confidence 68999999999999999999999 9999999865 555
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.14 E-value=8.1e-11 Score=94.56 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhh
Q 014990 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALE 199 (415)
Q Consensus 120 ~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~ 199 (415)
|+.|.+|+. ++++++.+.+. . -..+++++|||+|++|+|+|..+.+
T Consensus 2 ~~lP~ip~~--~~i~ts~~~l~----l---------~~~p~~vvIiGgG~IG~E~A~~~~~------------------- 47 (125)
T d1ojta2 2 TKLPFIPED--PRIIDSSGALA----L---------KEVPGKLLIIGGGIIGLEMGTVYST------------------- 47 (125)
T ss_dssp CCCSSCCCC--TTEECHHHHTT----C---------CCCCSEEEEESCSHHHHHHHHHHHH-------------------
T ss_pred CCCCCCCCC--CcEEcHHHhhC----c---------cccCCeEEEECCCHHHHHHHHHhhc-------------------
Confidence 345555543 46777665442 1 1147999999999999999999986
Q ss_pred cCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCC
Q 014990 200 GSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLG 279 (415)
Q Consensus 200 ~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 279 (415)
.| .+|+++.+++.+...+ ++++. +.+.+...
T Consensus 48 -~G-~~Vtive~~~~il~~~-d~~~~-------------------------------------~~l~~~l~--------- 78 (125)
T d1ojta2 48 -LG-SRLDVVEMMDGLMQGA-DRDLV-------------------------------------KVWQKQNE--------- 78 (125)
T ss_dssp -HT-CEEEEECSSSSSSTTS-CHHHH-------------------------------------HHHHHHHG---------
T ss_pred -CC-CEEEEEEeeccccccc-hhhHH-------------------------------------HHHHHHHH---------
Confidence 45 5899999998664322 22221 12222221
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
++|+++++++.+.++. . .++.+ .+.+... .|+.++++||.|++|+|.
T Consensus 79 ~~gv~~~~~~~v~~v~--~-~~~g~-~v~~~~~--------------~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 79 YRFDNIMVNTKTVAVE--P-KEDGV-YVTFEGA--------------NAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp GGEEEEECSCEEEEEE--E-ETTEE-EEEEESS--------------SCCSSCEEESCEEECCCE
T ss_pred HcCcccccCcEEEEEE--E-cCCcE-EEEEEeC--------------CCCeEEEEcCEEEEecCC
Confidence 7799999999999987 4 23332 3444321 344458999999999994
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.6e-10 Score=92.87 Aligned_cols=122 Identities=19% Similarity=0.324 Sum_probs=88.4
Q ss_pred CCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHH
Q 014990 121 RALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197 (415)
Q Consensus 121 ~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~ 197 (415)
|.+++||.+ ..++.++.. +.. ....+|+|+|||+|.+|+|.|..|.+
T Consensus 2 R~L~ipge~~~~gkGV~yca~-cD~------------~~~~gk~V~VvGgG~sA~~~A~~L~~----------------- 51 (126)
T d1fl2a2 2 RNMNVPGEDQYRTKGVTYCPH-CDG------------PLFKGKRVAVIGGGNSGVEAAIDLAG----------------- 51 (126)
T ss_dssp CCCCCTTTTTTBTTTEESCHH-HHG------------GGGBTCEEEEECCSHHHHHHHHHHHT-----------------
T ss_pred CcCCCCCHHHhcCCCEEEEEe-cCh------------hhcCCceEEEEeCCHHHHHHHHhhhc-----------------
Confidence 567888876 457777532 111 12379999999999999999999996
Q ss_pred hhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCC
Q 014990 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM 277 (415)
Q Consensus 198 ~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (415)
-+++|++++|++.+.. .+.+ .+.+.
T Consensus 52 ----~a~~V~li~r~~~~~~---~~~~-------------------------------------~~~~~----------- 76 (126)
T d1fl2a2 52 ----IVEHVTLLEFAPEMKA---DQVL-------------------------------------QDKLR----------- 76 (126)
T ss_dssp ----TBSEEEEECSSSSCCS---CHHH-------------------------------------HHHHH-----------
T ss_pred ----cCCceEEEeccccccc---cccc-------------------------------------ccccc-----------
Confidence 4789999999975421 0111 01111
Q ss_pred CCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 278 ~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
...+|+++++..+.++. + +++.++++++.+. .+|+.+++++|-|++++|.
T Consensus 77 -~~~~I~v~~~~~v~~i~--G-~~~~v~~v~l~~~-------------~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 77 -SLKNVDIILNAQTTEVK--G-DGSKVVGLEYRDR-------------VSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp -TCTTEEEESSEEEEEEE--E-SSSSEEEEEEEET-------------TTCCEEEEECSEEEECSCE
T ss_pred -cccceeEEcCcceEEEE--c-cccceeeEEEEEC-------------CCCCEEEEECCEEEEEeCC
Confidence 03469999999999998 6 4467888988763 1677789999999999984
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=1.8e-10 Score=92.08 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=69.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+++++|||+|++|+|+|..|.+ .| .+||++.|++.+...+ ++++.+
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~--------------------lG-~~Vtii~~~~~~l~~~-d~ei~~----------- 68 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSR--------------------LG-SKVTVVEFQPQIGASM-DGEVAK----------- 68 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSSSSS-CHHHHH-----------
T ss_pred CCCeEEEECCCchHHHHHHHHHh--------------------hC-cceeEEEeccccchhh-hhhhHH-----------
Confidence 46899999999999999999996 45 5899999988664322 222211
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
.+.+.+. ++||+++++..+.++. ..+++....+++.+
T Consensus 69 ----------------------~l~~~l~-------------~~GV~i~~~~~v~~v~--~~~~~~~v~~~~~~------ 105 (122)
T d1v59a2 69 ----------------------ATQKFLK-------------KQGLDFKLSTKVISAK--RNDDKNVVEIVVED------ 105 (122)
T ss_dssp ----------------------HHHHHHH-------------HTTCEEECSEEEEEEE--EETTTTEEEEEEEE------
T ss_pred ----------------------HHHHHHH-------------hccceEEeCCEEEEEE--EeCCCcEEEEEEEe------
Confidence 1222222 6689999999999987 32344443444433
Q ss_pred CCCcceeccCCceEEEecCeeEEe
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKS 341 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a 341 (415)
+. +++.++++||.|++|
T Consensus 106 --~~-----~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 106 --TK-----TNKQENLEAEVLLVA 122 (122)
T ss_dssp --TT-----TTEEEEEEESEEEEC
T ss_pred --CC-----CCCeEEEEeCEEEEC
Confidence 11 567779999999986
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.3e-10 Score=96.09 Aligned_cols=49 Identities=24% Similarity=0.240 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhc
Q 014990 120 DRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 120 ~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
|+.|+|||.+.++++++.+++.. . ...+|+|+|||+|++|+|+|..+.+
T Consensus 2 Pr~p~IpG~d~~~V~~a~d~L~~---~---------~~~gkrVvVIGgG~~g~d~a~~~~r 50 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVLSYLDVLRD---K---------APVGNKVAIIGCGGIGFDTAMYLSQ 50 (162)
T ss_dssp ECCCCCBTTTSTTEEEHHHHHTS---C---------CCCCSEEEEECCHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCeEEHHHHhhC---c---------cccCCceEEEcCchhHHHHHHHHHH
Confidence 78899999999999999887631 1 2368999999999999999999997
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.11 E-value=1.4e-10 Score=108.53 Aligned_cols=44 Identities=30% Similarity=0.450 Sum_probs=39.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
.+...||||||+|+||+++|..|++.| .+|+|+||.+..||...
T Consensus 20 ~~et~DVvVIG~G~aGl~aA~~la~~G--~~V~llEk~~~~gG~s~ 63 (322)
T d1d4ca2 20 VKETTDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGGNTK 63 (322)
T ss_dssp CCEECSEEEECSSHHHHHHHHHHHTTT--CCEEEECSSSSSCTTGG
T ss_pred CCCcceEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCccc
Confidence 456789999999999999999999999 99999999988777544
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.6e-10 Score=91.64 Aligned_cols=97 Identities=12% Similarity=0.255 Sum_probs=66.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+++|+|||+|++|+|+|..|++ .| .+||++.|++.+...+
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~--------------------~G-~~Vtlve~~~~~l~~~------------------ 60 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVING--------------------LG-AKTHLFEMFDAPLPSF------------------ 60 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSSTTS------------------
T ss_pred CCCEEEEECCChhhHHHHHHhhc--------------------cc-cEEEEEeecchhhhhc------------------
Confidence 47899999999999999999986 45 4899999987653211
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
. +.+.+++.+.+. ++||++++++.+.++. ..+++.+ .+.+.
T Consensus 61 -----------d-----~~~~~~~~~~l~-------------~~GV~~~~~~~v~~i~--~~~~~~~-~v~~~------- 101 (116)
T d1gesa2 61 -----------D-----PMISETLVEVMN-------------AEGPQLHTNAIPKAVV--KNTDGSL-TLELE------- 101 (116)
T ss_dssp -----------C-----HHHHHHHHHHHH-------------HHSCEEECSCCEEEEE--ECTTSCE-EEEET-------
T ss_pred -----------c-----hhhHHHHHHHHH-------------HCCCEEEeCCEEEEEE--EcCCcEE-EEEEC-------
Confidence 1 112222333333 6689999999998886 3123333 23321
Q ss_pred CCCcceeccCCceEEEecCeeEEeec
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
+| +++++|.||||||
T Consensus 102 ---------~g--~~~~~D~vi~a~G 116 (116)
T d1gesa2 102 ---------DG--RSETVDCLIWAIG 116 (116)
T ss_dssp ---------TS--CEEEESEEEECSC
T ss_pred ---------CC--CEEEcCEEEEecC
Confidence 23 3789999999998
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.10 E-value=3.7e-10 Score=89.60 Aligned_cols=117 Identities=15% Similarity=0.242 Sum_probs=77.6
Q ss_pred CCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC
Q 014990 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (415)
Q Consensus 123 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (415)
|.+|+.+ .+.++.+++.. . ..+++|+|||||++|+|+|..+.+ .|
T Consensus 1 P~~~~~~--~i~~s~~~l~~-~------------~~p~~v~IiGgG~ig~E~A~~l~~--------------------~G 45 (117)
T d1ebda2 1 PNFKFSN--RILDSTGALNL-G------------EVPKSLVVIGGGYIGIELGTAYAN--------------------FG 45 (117)
T ss_dssp TTBCCCS--SEECHHHHHTC-S------------SCCSEEEEECCSHHHHHHHHHHHH--------------------TT
T ss_pred CcCCCCC--CEEChhHhhCh-h------------hcCCeEEEECCCccceeeeeeecc--------------------cc
Confidence 4556553 56776665531 1 147999999999999999999986 45
Q ss_pred cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCcee
Q 014990 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (415)
Q Consensus 203 ~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (415)
.+||++.|++.+...+ ++++ ...+.+.+. ++|
T Consensus 46 -~~Vtlve~~~~il~~~-d~~~---------------------------------~~~l~~~l~-------------~~G 77 (117)
T d1ebda2 46 -TKVTILEGAGEILSGF-EKQM---------------------------------AAIIKKRLK-------------KKG 77 (117)
T ss_dssp -CEEEEEESSSSSSTTS-CHHH---------------------------------HHHHHHHHH-------------HTT
T ss_pred -cEEEEEEecceecccc-cchh---------------------------------HHHHHHHHH-------------hcC
Confidence 5899999998764322 2112 112222332 668
Q ss_pred EEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEe
Q 014990 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKS 341 (415)
Q Consensus 283 v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a 341 (415)
|+++++..++++. . .++.+ .+.+.. +|+.++++||.||+.
T Consensus 78 I~i~~~~~v~~i~--~-~~~~~-~v~~~~---------------~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 78 VEVVTNALAKGAE--E-REDGV-TVTYEA---------------NGETKTIDADYVLVT 117 (117)
T ss_dssp CEEEESEEEEEEE--E-ETTEE-EEEEEE---------------TTEEEEEEESEEEEC
T ss_pred CEEEcCCEEEEEE--E-cCCEE-EEEEEe---------------CCCEEEEEeEEEEEC
Confidence 9999999999997 3 23322 343322 566778999999974
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.07 E-value=5.7e-10 Score=88.98 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=70.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||||+.|+.+|..|++++ .+|+|+|+.+.+... ...++....+.+.++..|++++.+..+.
T Consensus 28 ~~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~~l~~---------~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 96 (121)
T d1d7ya2 28 RPQSRLLIVGGGVIGLELAATARTAG--VHVSLVETQPRLMSR---------AAPATLADFVARYHAAQGVDLRFERSVT 96 (121)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTTTT---------TSCHHHHHHHHHHHHTTTCEEEESCCEE
T ss_pred hcCCeEEEECcchhHHHHHHHhhccc--ceEEEEeeccccccc---------cCCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence 35689999999999999999999999 999999998875211 1234667777888888899999988773
Q ss_pred e----EEEecccc-cccCEEEEccC
Q 014990 97 S----SVSLSELR-QLYHVVVLAYG 116 (415)
Q Consensus 97 ~----~v~~~~~~-~~~d~lvlAtG 116 (415)
. .+..+++. ..+|.||+|+|
T Consensus 97 ~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 97 GSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp EEETTEEEETTSCEEECSEEEECSC
T ss_pred EEeCCEEEECCCCEEECCEEEEeeC
Confidence 2 34445544 48999999998
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=4e-10 Score=96.28 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=58.5
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhh
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSS 410 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~ 410 (415)
.++.++.++.++|..++.. .....+......|.+.+|.. .+|+.||||++|||...+......|+.+|..+|.+
T Consensus 100 ~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~g~i~v~~~--~~t~~~gv~a~gd~~~~~~~~~vva~g~G~~aA~~ 173 (184)
T d1fl2a1 100 AVLKARSIIVATGAKLPNT----NWLEGAVERNRMGEIIIDAK--CETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLS 173 (184)
T ss_dssp CEEEEEEEEECCCEEEESC----GGGTTTSCBCTTSCBCCCTT--CBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHH
T ss_pred eeeeccccccccccccccc----ccccccccccccceeccCCc--eeeeCCCEEEEeeecCcccCCcEEEEECcHHHHHH
Confidence 3788999999999877542 22334455666799999987 89999999999999876644344688999888887
Q ss_pred ccc
Q 014990 411 LSL 413 (415)
Q Consensus 411 i~~ 413 (415)
+..
T Consensus 174 ~~~ 176 (184)
T d1fl2a1 174 AFD 176 (184)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.06 E-value=2.5e-11 Score=103.35 Aligned_cols=107 Identities=18% Similarity=0.083 Sum_probs=65.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC-CCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-VAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
.++|||||||++|+.+|..|++.+++.+|+|||+.+.+....... ............ .........++.+..+..+..
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIK-HGYDGLRAHGIQVVHDSATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGE-ECSHHHHTTTEEEECCCEEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhh-hhhhhccccceeEeeeeeEee
Confidence 479999999999999999999999888999999987643321110 000000000000 011122334666666655422
Q ss_pred -----EEEeccc-ccccCEEEEccCCCCCCCCCCCC
Q 014990 98 -----SVSLSEL-RQLYHVVVLAYGAESDRALGIPG 127 (415)
Q Consensus 98 -----~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g 127 (415)
.+...+. ...||+||+|||+ .+..+.+++
T Consensus 81 ~~~~~~~~~~~~~~i~~D~li~atG~-~~~~~~i~~ 115 (186)
T d1fcda1 81 DPDKKLVKTAGGAEFGYDRCVVAPGI-ELIYDKIEQ 115 (186)
T ss_dssp CTTTTEEEETTSCEEECSEEEECCCE-EECCTTSTE
T ss_pred eeccceeecccceeeccceEEEEecc-ccchhhhhh
Confidence 2333333 3489999999998 566555554
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=3.9e-10 Score=89.28 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
...+++|+|||||+.|+.+|..|++.| .+|+|+|+.+.+. |.+ .+++...+.+.+++.+++++.++.+
T Consensus 18 ~~~p~~vvIiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~~l--------~~~--d~~~~~~~~~~l~~~GV~~~~~~~v 85 (116)
T d1gesa2 18 PALPERVAVVGAGYIGVELGGVINGLG--AKTHLFEMFDAPL--------PSF--DPMISETLVEVMNAEGPQLHTNAIP 85 (116)
T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHSCEEECSCCE
T ss_pred hhCCCEEEEECCChhhHHHHHHhhccc--cEEEEEeecchhh--------hhc--chhhHHHHHHHHHHCCCEEEeCCEE
Confidence 345688999999999999999999999 9999999988753 221 2467778888888899999999876
Q ss_pred ce---------EEEecccc-cccCEEEEccC
Q 014990 96 GS---------SVSLSELR-QLYHVVVLAYG 116 (415)
Q Consensus 96 ~~---------~v~~~~~~-~~~d~lvlAtG 116 (415)
.. .+..++++ ..+|.||+|||
T Consensus 86 ~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 86 KAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 32 23334443 47999999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.06 E-value=3.5e-10 Score=91.86 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=69.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+++|+|||+|++|+|+|..|.+ .+ .+|+++.+++.+.....++++.+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~--------------------~g-~~Vtvie~~~~~l~~~~~~~~~~----------- 81 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIK--------------------AN-MHVTLLDTAARVLERVTAPPVSA----------- 81 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSTTTTTSCHHHHH-----------
T ss_pred cCCEEEEECCchHHHHHHHHHHh--------------------hC-cceeeeeecccccccccchhhhh-----------
Confidence 68999999999999999999986 34 58999999987543333322222
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
.+.+.+. ++||+++++..+.++.... ++..+..+.+.
T Consensus 82 ----------------------~~~~~~~-------------~~GV~i~~~~~v~~i~~~~-~~~~v~~v~~~------- 118 (133)
T d1q1ra2 82 ----------------------FYEHLHR-------------EAGVDIRTGTQVCGFEMST-DQQKVTAVLCE------- 118 (133)
T ss_dssp ----------------------HHHHHHH-------------HHTCEEECSCCEEEEEECT-TTCCEEEEEET-------
T ss_pred ----------------------hhhhccc-------------ccccEEEeCCeEEEEEEeC-CCceEEEEECC-------
Confidence 1222222 6689999999999886211 23444444432
Q ss_pred CCCcceeccCCceEEEecCeeEEeec
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
+| +++++|+||+|+|
T Consensus 119 ---------~G--~~i~~D~vi~a~G 133 (133)
T d1q1ra2 119 ---------DG--TRLPADLVIAGIG 133 (133)
T ss_dssp ---------TS--CEEECSEEEECCC
T ss_pred ---------CC--CEEECCEEEEeeC
Confidence 23 2799999999998
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.04 E-value=6.8e-10 Score=102.98 Aligned_cols=44 Identities=34% Similarity=0.464 Sum_probs=39.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+...+||||||+|+||+++|..|++.| .+|+||||.+..+|...
T Consensus 13 p~e~~DVlVIG~G~aGl~aA~~la~~G--~~V~lvEK~~~~gG~s~ 56 (308)
T d1y0pa2 13 PHDTVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGGNAK 56 (308)
T ss_dssp CSEECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTGG
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcce
Confidence 346789999999999999999999999 99999999998877654
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.04 E-value=5.9e-10 Score=88.39 Aligned_cols=101 Identities=21% Similarity=0.322 Sum_probs=67.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+++++|||||++|+|+|..+.+ +.. ...+|+++.|++.+...+ ++++
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~-----------------~~~-~g~~Vtli~~~~~il~~~-d~~~------------- 64 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNA-----------------YKA-RGGQVDLAYRGDMILRGF-DSEL------------- 64 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHH-----------------HSC-TTCEEEEEESSSSSSTTS-CHHH-------------
T ss_pred cCCeEEEECCChHHHHHHHHhHh-----------------hcc-cccccceecccccccccc-cchh-------------
Confidence 47999999999999999987764 001 235899999987664222 2112
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
.+.+.+.+. ++||++++++.+.++. . .++....+.++
T Consensus 65 --------------------~~~~~~~l~-------------~~GI~v~~~~~v~~i~--~-~~~g~~~v~~~------- 101 (117)
T d1feca2 65 --------------------RKQLTEQLR-------------ANGINVRTHENPAKVT--K-NADGTRHVVFE------- 101 (117)
T ss_dssp --------------------HHHHHHHHH-------------HTTEEEEETCCEEEEE--E-CTTSCEEEEET-------
T ss_pred --------------------hHHHHHHHh-------------hCcEEEEcCCEEEEEE--E-CCCCEEEEEEC-------
Confidence 222223332 6689999999999996 3 22333334332
Q ss_pred CCCcceeccCCceEEEecCeeEEeecc
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
+| ++++||.||||+|.
T Consensus 102 ---------~g--~~i~~D~Vi~a~GR 117 (117)
T d1feca2 102 ---------SG--AEADYDVVMLAIGR 117 (117)
T ss_dssp ---------TS--CEEEESEEEECSCE
T ss_pred ---------CC--CEEEcCEEEEecCC
Confidence 22 37999999999994
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.02 E-value=3.9e-10 Score=89.45 Aligned_cols=99 Identities=18% Similarity=0.285 Sum_probs=65.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+++++|||||++|+|+|..+... .....+|+++.|++.+...+ ++++
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l------------------~~~~~~Vtli~~~~~iL~~~-d~~~------------- 66 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAY------------------KPKDGQVTLCYRGEMILRGF-DHTL------------- 66 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH------------------CCTTCEEEEEESSSSSSTTS-CHHH-------------
T ss_pred cCCeEEEECCcHHHHHHHHHhhhc------------------ccCCcEEEEEeccchhhccc-chHH-------------
Confidence 478999999999999999887740 01224799999987664222 2222
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
...+.+.+. ++||+++++..+.++. ...++.+ .++++
T Consensus 67 --------------------~~~l~~~l~-------------~~GV~v~~~~~v~~ie--~~~~~~~-~v~~~------- 103 (117)
T d1aoga2 67 --------------------REELTKQLT-------------ANGIQILTKENPAKVE--LNADGSK-SVTFE------- 103 (117)
T ss_dssp --------------------HHHHHHHHH-------------HTTCEEEESCCEEEEE--ECTTSCE-EEEET-------
T ss_pred --------------------HHHHHHHHH-------------hcCcEEEcCCEEEEEE--EcCCCeE-EEEEC-------
Confidence 222223332 6789999999999986 3123333 24332
Q ss_pred CCCcceeccCCceEEEecCeeEEee
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSI 342 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~at 342 (415)
+| ++++||.||||+
T Consensus 104 ---------~G--~~i~~D~Vi~AI 117 (117)
T d1aoga2 104 ---------SG--KKMDFDLVMMAI 117 (117)
T ss_dssp ---------TS--CEEEESEEEECS
T ss_pred ---------CC--cEEEeCEEEEeC
Confidence 23 379999999985
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=4.3e-10 Score=90.30 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=68.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+|+|+|||+|++|+|+|..|.+ .| .+|+++.|++.+...+ ++++
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~~--------------------~G-~~Vtlv~~~~~~l~~~-d~~~------------- 65 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILSA--------------------LG-SKTSLMIRHDKVLRSF-DSMI------------- 65 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSSSCTTS-CHHH-------------
T ss_pred cCCEEEEEcCCccHHHHHHHHhc--------------------CC-cEEEEEeeccccccch-hhHH-------------
Confidence 36899999999999999999986 45 5899999998654222 2222
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
...+.+.+. ++||++++++.++++. . .+..+ .+++...
T Consensus 66 --------------------~~~~~~~l~-------------~~Gv~i~~~~~v~~i~--~-~~~g~-~v~~~~~----- 103 (125)
T d3grsa2 66 --------------------STNCTEELE-------------NAGVEVLKFSQVKEVK--K-TLSGL-EVSMVTA----- 103 (125)
T ss_dssp --------------------HHHHHHHHH-------------HTTCEEETTEEEEEEE--E-ETTEE-EEEEEEC-----
T ss_pred --------------------HHHHHHHHH-------------HCCCEEEeCCEEEEEE--E-cCCeE-EEEEEEc-----
Confidence 122223332 6689999999999996 3 22211 2222111
Q ss_pred CCCcceeccCCceEEEecCeeEEeec
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
..|. .......++||.||||+|
T Consensus 104 ~~g~----~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 104 VPGR----LPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp CTTS----CCEEEEEEEESEEEECSC
T ss_pred cCCc----CcCccccccCCEEEEEeC
Confidence 1122 122345789999999998
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.00 E-value=5.1e-10 Score=100.48 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=34.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
++||+|||||+||++||..|++.| .+|+|||+.+.+++
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G--~~V~liEk~~~~g~ 39 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLGR 39 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCc
Confidence 479999999999999999999999 99999999977653
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.99 E-value=2.9e-10 Score=102.66 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=35.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+.++|+||||||||++||..|++.| .+|+|||+.+.+|
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~~G--~~V~vlEk~~~~G 40 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIG 40 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCC
Confidence 5689999999999999999999999 9999999998765
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=5.1e-10 Score=96.46 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC------CCCCcchHHHHHHHHHHhhccCeEEEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV------APDHPETKIVINQFSRVVQHERCSFFG 91 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (415)
+.++|+||||||+|++||.+|+|.+ .+|+|||+.+..+....... .+......++.+....++.+.++.+..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g--~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 81 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTT--CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--CceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec
Confidence 5679999999999999999999999 99999998876554433211 123334567777778888888887776
Q ss_pred ceEece-------EEEecccccccCEEEEccCC
Q 014990 92 NVTLGS-------SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 92 ~~~v~~-------~v~~~~~~~~~d~lvlAtG~ 117 (415)
+..... .++........+.+++|+|.
T Consensus 82 ~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~ 114 (190)
T d1trba1 82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGA 114 (190)
T ss_dssp CCEEEEECSSSSEEEEESSCEEEEEEEEECCCE
T ss_pred ceeEEEecCCCcEEEEEeeeeEeeeeeeeecce
Confidence 654322 22333334467899999997
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.97 E-value=7.6e-10 Score=88.54 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+++++|||+|++|+|+|..+++ .| .+||++.|++.+... .++++.+
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~--------------------~G-~~Vtvi~~~~~~l~~-~d~~~~~----------- 70 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGR--------------------IG-SEVTVVEFASEIVPT-MDAEIRK----------- 70 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHH--------------------HT-CEEEEECSSSSSSTT-SCHHHHH-----------
T ss_pred cCCeEEEEccchHHHHHHHHHHh--------------------cC-CeEEEEEEccccCch-hhhcchh-----------
Confidence 47999999999999999999996 45 589999999866422 2222211
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
.+.+.+. ++||++++++.+.++. . .++.+ .+.+...
T Consensus 71 ----------------------~l~~~l~-------------~~GI~i~~~~~v~~i~--~-~~~~~-~v~~~~~----- 106 (123)
T d1dxla2 71 ----------------------QFQRSLE-------------KQGMKFKLKTKVVGVD--T-SGDGV-KLTVEPS----- 106 (123)
T ss_dssp ----------------------HHHHHHH-------------HSSCCEECSEEEEEEE--C-SSSSE-EEEEEES-----
T ss_pred ----------------------hhhhhhh-------------cccceEEcCCceEEEE--E-ccCeE-EEEEEEC-----
Confidence 1222222 6789999999999997 4 23322 2333221
Q ss_pred CCCcceeccCCceEEEecCeeEEe
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKS 341 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~a 341 (415)
..|+.++++||.|++|
T Consensus 107 --------~~g~~~~i~~D~vLvA 122 (123)
T d1dxla2 107 --------AGGEQTIIEADVVLVS 122 (123)
T ss_dssp --------SSCCCEEEEESEEECC
T ss_pred --------CCCeEEEEEcCEEEEc
Confidence 1455668999999976
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.97 E-value=1.9e-09 Score=87.37 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=69.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+|||||+.|+.+|..|++.+ .+|+++|+.+.+... ...+++.+.+.+.+++.|++++.++.+.
T Consensus 33 ~~~k~v~VIGgG~iG~E~A~~l~~~g--~~Vtvie~~~~~l~~---------~~~~~~~~~~~~~~~~~GV~i~~~~~v~ 101 (133)
T d1q1ra2 33 IADNRLVVIGGGYIGLEVAATAIKAN--MHVTLLDTAARVLER---------VTAPPVSAFYEHLHREAGVDIRTGTQVC 101 (133)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTT---------TSCHHHHHHHHHHHHHHTCEEECSCCEE
T ss_pred ccCCEEEEECCchHHHHHHHHHHhhC--cceeeeeeccccccc---------ccchhhhhhhhhcccccccEEEeCCeEE
Confidence 45789999999999999999999999 999999998875321 1223556677778888899999987652
Q ss_pred e-----------EEEecccc-cccCEEEEccC
Q 014990 97 S-----------SVSLSELR-QLYHVVVLAYG 116 (415)
Q Consensus 97 ~-----------~v~~~~~~-~~~d~lvlAtG 116 (415)
. .+..+++. ..+|.||+|+|
T Consensus 102 ~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 102 GFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred EEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 2 13344544 58999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.97 E-value=1e-09 Score=86.66 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
...+++++|||||+.|+.+|..|++.| .+|+|+|+.+.+. |.+ ..++.+.+.+.+++.+++++.++.+
T Consensus 18 ~~~p~~vvIiGgG~~G~E~A~~l~~~g--~~Vtlve~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V 85 (115)
T d1lvla2 18 KALPQHLVVVGGGYIGLELGIAYRKLG--AQVSVVEARERIL--------PTY--DSELTAPVAESLKKLGIALHLGHSV 85 (115)
T ss_dssp SSCCSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHTCEEETTCEE
T ss_pred ccCCCeEEEECCCHHHHHHHHHHhhcc--cceEEEeeecccc--------ccc--cchhHHHHHHHHHhhcceEEcCcEE
Confidence 345689999999999999999999999 9999999988752 322 2457778888888889999999877
Q ss_pred ceE-----EEe-cc---cccccCEEEEccC
Q 014990 96 GSS-----VSL-SE---LRQLYHVVVLAYG 116 (415)
Q Consensus 96 ~~~-----v~~-~~---~~~~~d~lvlAtG 116 (415)
... +.. .. ....+|.|++|+|
T Consensus 86 ~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 86 EGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred EEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 331 111 11 1247999999998
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.96 E-value=5.8e-09 Score=92.39 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=62.1
Q ss_pred CceEEEecCeeEEeeccCCccCCCC-c----c-cCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhh
Q 014990 328 GEFEDLDCGMVLKSIGYKSVPVNGL-P----F-DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNL 401 (415)
Q Consensus 328 g~~~~i~~D~vi~atG~~p~~~~~~-~----~-~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~ 401 (415)
...+.+++|.++++++.+|...... | + ....++.++ +|++.+|+. ++|+.|+|||+|||.+++. ++..|+
T Consensus 145 ~~~~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~-~G~I~vde~--~~T~~~~iyAvGDv~~~~~-l~~~A~ 220 (238)
T d1aoga1 145 AVKERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIK-NGGVQVDEY--SRTNVSNIYAIGDVTNRVM-LTPVAI 220 (238)
T ss_dssp CEEEEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEE-TTEECCCTT--CBCSSTTEEECGGGGTSCC-CHHHHH
T ss_pred cccccccccceeeecccccccccccccceeeecccccEEEEc-CCeEEecCC--eeeccCCEEEEEEecCCcc-chhhHH
Confidence 4456789999999998887442110 1 1 123456655 799999997 8999999999999987654 566899
Q ss_pred hhHHHHHhhccc
Q 014990 402 YCAEETVSSLSL 413 (415)
Q Consensus 402 ~~g~~~a~~i~~ 413 (415)
.||+.||++|+.
T Consensus 221 ~eg~~aa~~i~g 232 (238)
T d1aoga1 221 NEAAALVDTVFG 232 (238)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC
Confidence 999999999864
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.95 E-value=7.6e-10 Score=87.44 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=65.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+++++|||+|++|+|+|..|++ .| .+||++.|.+.+...+ ++
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~--------------------~g-~~Vtlve~~~~il~~~-d~--------------- 62 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRK--------------------LG-AQVSVVEARERILPTY-DS--------------- 62 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------HT-CEEEEECSSSSSSTTS-CH---------------
T ss_pred CCCeEEEECCCHHHHHHHHHHhh--------------------cc-cceEEEeeeccccccc-cc---------------
Confidence 46899999999999999999986 34 5899999987653222 11
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
+ +...+.+.+. ++||++++++.+.++. ++. .....
T Consensus 63 -------------~-----~~~~l~~~l~-------------~~gV~i~~~~~V~~i~-----~~~---~~~~~------ 97 (115)
T d1lvla2 63 -------------E-----LTAPVAESLK-------------KLGIALHLGHSVEGYE-----NGC---LLAND------ 97 (115)
T ss_dssp -------------H-----HHHHHHHHHH-------------HHTCEEETTCEEEEEE-----TTE---EEEEC------
T ss_pred -------------h-----hHHHHHHHHH-------------hhcceEEcCcEEEEEc-----CCe---EEEEE------
Confidence 1 1222233333 5689999998887774 321 11111
Q ss_pred CCCcceeccCCceEEEecCeeEEeec
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
..+++++++||.||||+|
T Consensus 98 --------~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 98 --------GKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp --------SSSCCCEECCSCEEECCC
T ss_pred --------cCCCeEEEEcCEEEEecC
Confidence 134555899999999998
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.94 E-value=2.1e-09 Score=100.70 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=62.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCC---C-----
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN---G----- 351 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~---~----- 351 (415)
..+++++....+++++ . +++.+.++...+. .+|+...+.++.||+|||-...... +
T Consensus 170 ~~gv~i~~~~~~~~li--~-~~~~v~g~~~~~~-------------~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~t 233 (336)
T d2bs2a2 170 KLGVSIQDRKEAIALI--H-QDGKCYGAVVRDL-------------VTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCE 233 (336)
T ss_dssp HHTCEEECSEEEEEEE--E-ETTEEEEEEEEET-------------TTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCS
T ss_pred hccccccceeeeeecc--c-ccccccceeEEec-------------cCCcEEEEecCeEEEecccccccccccccccccc
Confidence 4468888888887776 4 5777766665442 2677778999999999985431100 0
Q ss_pred ---CcccCCCC-ccccCCCceeeccCCCCCcccCCeeeeeccc
Q 014990 352 ---LPFDNHKG-IVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (415)
Q Consensus 352 ---~~~~~~~g-~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~ 390 (415)
+.+....| ..+.+.+++..++. ++++.|++|++|++.
T Consensus 234 Gdg~~~~~~~G~~~l~~~~~iq~~~~--~~t~~~gl~a~G~~~ 274 (336)
T d2bs2a2 234 GTGTAIALETGIAQLGNMGGIRTDYR--GEAKLKGLFSAGEAA 274 (336)
T ss_dssp CHHHHHHHTTSSSCEECCCEEECCTT--SBCSSBTEEECGGGE
T ss_pred chhhhhhhhhhhhhhccccceeechh--hcccCCcceeccccc
Confidence 00111223 23456788999987 889999999999975
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.93 E-value=6.8e-09 Score=83.43 Aligned_cols=98 Identities=18% Similarity=0.322 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEE
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 236 (415)
+.+|+|+|||+|.+++|-|..|++ -+++||+++|++.+.+ .+.+.
T Consensus 32 frgk~V~VvGgGdsA~e~A~~L~~---------------------~a~~V~li~r~~~~ra---~~~~~----------- 76 (130)
T d1vdca2 32 FRNKPLAVIGGGDSAMEEANFLTK---------------------YGSKVYIIHRRDAFRA---SKIMQ----------- 76 (130)
T ss_dssp GTTSEEEEECCSHHHHHHHHHHTT---------------------TSSEEEEECSSSSCCS---CHHHH-----------
T ss_pred hCCCEEEEEcCchHHHHHHHHHhC---------------------CCCcEEEEEecccccc---chhhh-----------
Confidence 379999999999999999999996 5689999999986532 11111
Q ss_pred EcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCC-CCCeeeEEEeeeeec
Q 014990 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER-SGHVSGVHFEKTALK 315 (415)
Q Consensus 237 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~-~~~v~~v~~~~~~~~ 315 (415)
+.+. ...+|++++++.+.++. ++. .+.+.++++.+.
T Consensus 77 --------------------------~~l~------------~~~nI~v~~~~~v~~i~--Gd~~~~~v~~v~l~~~--- 113 (130)
T d1vdca2 77 --------------------------QRAL------------SNPKIDVIWNSSVVEAY--GDGERDVLGGLKVKNV--- 113 (130)
T ss_dssp --------------------------HHHH------------TCTTEEEECSEEEEEEE--ESSSSSSEEEEEEEET---
T ss_pred --------------------------hccc------------cCCceEEEeccEEEEEE--ccCCcccEEEEEEEEC---
Confidence 1111 14469999999999998 511 135778877663
Q ss_pred CCCCCcceeccCCceEEEecCeeEEee
Q 014990 316 GGGPGKQYAVGTGEFEDLDCGMVLKSI 342 (415)
Q Consensus 316 ~~~~g~~~~~~~g~~~~i~~D~vi~at 342 (415)
.+++.+++++|-|++++
T Consensus 114 ----------~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 114 ----------VTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp ----------TTCCEEEEECSEEEECS
T ss_pred ----------CCCCEEEEECCEEEEEC
Confidence 26777899999999875
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=2.7e-09 Score=85.11 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=65.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+++++|||+|++|+|+|..+.+ .| .+|+++.|+. +... .++++.+
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~--------------------lG-~~Vtii~~~~-~l~~-~D~~~~~----------- 64 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAG--------------------IG-LDVTVMVRSI-LLRG-FDQDMAN----------- 64 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEESSS-SSTT-SCHHHHH-----------
T ss_pred CCCeEEEECCCccHHHHHHHHhh--------------------cC-CeEEEEEech-hhcc-CCHHHHH-----------
Confidence 47899999999999999999996 56 4899998764 3222 2222211
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
.+.+.+. ++||++++++.++++....+.......+.+..
T Consensus 65 ----------------------~l~~~l~-------------~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~------ 103 (122)
T d1h6va2 65 ----------------------KIGEHME-------------EHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKS------ 103 (122)
T ss_dssp ----------------------HHHHHHH-------------HTTEEEEESCEEEEEEEEECSTTCEEEEEEEC------
T ss_pred ----------------------HHHHHHH-------------HCCCEEEECCEEEEEEEecCCCccEEEEEEEE------
Confidence 1222222 67899999999988752110111111222221
Q ss_pred CCCcceeccCCceEEEecCeeEEeec
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
+ .+++...++||.|+||+|
T Consensus 104 --~-----~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 104 --T-----NSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp --T-----TSCEEEEEEESEEECCCC
T ss_pred --C-----CCCcEEEEECCEEEEEeC
Confidence 0 134556789999999998
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.92 E-value=3.3e-10 Score=105.89 Aligned_cols=46 Identities=37% Similarity=0.416 Sum_probs=39.8
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..+....+|||||+|+||++||..|++.| .+|+|+||.+..+|...
T Consensus 14 ~~~~e~~DVvVIGaG~aGl~AA~~aa~~G--~~V~vlEK~~~~gG~S~ 59 (317)
T d1qo8a2 14 AGPSETTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGGNSM 59 (317)
T ss_dssp TCCSEEEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCTTGG
T ss_pred CCCCCccCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCchh
Confidence 33446789999999999999999999999 99999999988776543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.91 E-value=2.9e-09 Score=84.96 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.| .+|+|+++.+.+. + ...++...+.+.+++.|++++.++.+..
T Consensus 31 ~~~~vvIiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~~l~--------~---~d~~~~~~~~~~l~~~GV~~~~~~~v~~ 97 (122)
T d1xhca2 31 NSGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGAMFL--------G---LDEELSNMIKDMLEETGVKFFLNSELLE 97 (122)
T ss_dssp HHSEEEEEECSHHHHHHHHHHHHTT--CEEEEECSSSCCT--------T---CCHHHHHHHHHHHHHTTEEEECSCCEEE
T ss_pred cCCcEEEECCcHHHHHHHHHhhccc--ceEEEEecccccc--------C---CCHHHHHHHHHHHHHCCcEEEeCCEEEE
Confidence 3578999999999999999999999 9999999887652 1 1245666777888888999999987632
Q ss_pred ----EEEecccccccCEEEEccCC
Q 014990 98 ----SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ----~v~~~~~~~~~d~lvlAtG~ 117 (415)
.+..+.....+|.||+|+|.
T Consensus 98 ~~~~~v~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 98 ANEEGVLTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp ECSSEEEETTEEEECSCEEEECCE
T ss_pred EeCCEEEeCCCEEECCEEEEEEEe
Confidence 22223344579999999994
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.8e-09 Score=88.03 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=67.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
..++++|||||++|+|+|..|.+. .+..+ .+|+++.+++.......++++.
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~----------------~~~~g-~~Vt~i~~~~~~l~~~~~~~~~------------ 86 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRK----------------ARALG-TEVIQLFPEKGNMGKILPEYLS------------ 86 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHH----------------HHHHT-CEEEEECSSSSTTTTTSCHHHH------------
T ss_pred cCCEEEEECCCHHHHHHHHHHHHH----------------HHhcC-CEEEEecccccCCcccCCHHHH------------
Confidence 578999999999999999999741 11123 4899999987654322222221
Q ss_pred cccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC
Q 014990 238 REDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG 317 (415)
Q Consensus 238 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~ 317 (415)
..+.+.+. ++||++++++.+.++. . +++.+ .+++.
T Consensus 87 ---------------------~~~~~~l~-------------~~GV~~~~~~~V~~i~--~-~~~~~-~v~l~------- 121 (137)
T d1m6ia2 87 ---------------------NWTMEKVR-------------REGVKVMPNAIVQSVG--V-SSGKL-LIKLK------- 121 (137)
T ss_dssp ---------------------HHHHHHHH-------------TTTCEEECSCCEEEEE--E-ETTEE-EEEET-------
T ss_pred ---------------------HHHHHHHH-------------hCCcEEEeCCEEEEEE--e-cCCEE-EEEEC-------
Confidence 22223332 7799999999999986 4 23322 23332
Q ss_pred CCCcceeccCCceEEEecCeeEEeecc
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
+| ++++||+||||+|.
T Consensus 122 ---------~G--~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 122 ---------DG--RKVETDHIVAAVGL 137 (137)
T ss_dssp ---------TS--CEEEESEEEECCCE
T ss_pred ---------CC--CEEECCEEEEeecC
Confidence 23 38999999999994
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.88 E-value=3.3e-09 Score=88.37 Aligned_cols=69 Identities=20% Similarity=0.115 Sum_probs=50.2
Q ss_pred ccCCCCCCCCCCCCCCC--CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEE--cCChhHHHHHHHHhcCcccccccC
Q 014990 114 AYGAESDRALGIPGEDL--IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVIL--GQGNVALDVARILLRPTEELATTD 189 (415)
Q Consensus 114 AtG~~~~~~~~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VV--G~G~sg~e~a~~L~~~~~~~~~~~ 189 (415)
|||+.+-.+.|+||.+. ++++++.+.+. . . ...++.|+|+ |+|++|+|+|..|++
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~-~--~---------~~~~~~vvi~d~ggg~ig~e~A~~la~--------- 62 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMD-G--K---------KKIGKRVVILNADTYFMAPSLAEKLAT--------- 62 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHH-T--C---------SCCCSEEEEEECCCSSHHHHHHHHHHH---------
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhc-C--c---------cccCCceEEEecCCChHHHHHHHHHHH---------
Confidence 79984333448999884 46777766653 1 1 2256777776 999999999999996
Q ss_pred chhHHHHHhhcCCcceEEEEeecCcc
Q 014990 190 IASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
.| .+||++.+.+.+
T Consensus 63 -----------~G-~~Vtlv~~~~~~ 76 (156)
T d1djqa2 63 -----------AG-HEVTIVSGVHLA 76 (156)
T ss_dssp -----------TT-CEEEEEESSCTT
T ss_pred -----------cC-CeEEEEecCCcc
Confidence 45 589999998643
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.88 E-value=8.5e-09 Score=81.73 Aligned_cols=91 Identities=14% Similarity=0.301 Sum_probs=70.2
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
.....+++++|||||+.|+.+|..|++.| .+|+++++.+.+. |. ...++...+.+.+++.+++++.++
T Consensus 17 ~l~~~p~~i~IiG~G~ig~E~A~~l~~~G--~~Vtiv~~~~~ll--------~~--~d~ei~~~l~~~l~~~Gv~i~~~~ 84 (119)
T d3lada2 17 DFQNVPGKLGVIGAGVIGLELGSVWARLG--AEVTVLEAMDKFL--------PA--VDEQVAKEAQKILTKQGLKILLGA 84 (119)
T ss_dssp SCSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETC
T ss_pred CcccCCCeEEEECCChHHHHHHHHHHHcC--CceEEEEeecccC--------Cc--ccchhHHHHHHHHHhcCceeecCc
Confidence 33456789999999999999999999999 9999999887642 32 234677888888988899999998
Q ss_pred Eece--------EEEeccc----ccccCEEEEccC
Q 014990 94 TLGS--------SVSLSEL----RQLYHVVVLAYG 116 (415)
Q Consensus 94 ~v~~--------~v~~~~~----~~~~d~lvlAtG 116 (415)
.+.. .++.... ...+|+|++|+|
T Consensus 85 ~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 85 RVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 7632 1222221 236899999998
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=8.4e-09 Score=82.59 Aligned_cols=102 Identities=23% Similarity=0.335 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEE
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVH 236 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 236 (415)
+.+|+|+|||+|.+|+|.|..|.+ -+++|++++|++.+.. .+
T Consensus 25 ~~~k~V~VvGgGdsA~e~A~~L~~---------------------~a~~V~li~r~~~~~~---~~-------------- 66 (126)
T d1trba2 25 YRNQKVAVIGGGNTAVEEALYLSN---------------------IASEVHLIHRRDGFRA---EK-------------- 66 (126)
T ss_dssp GTTSEEEEECSSHHHHHHHHHHTT---------------------TSSEEEEECSSSSCCC---CH--------------
T ss_pred hCCCEEEEECCCHHHHHHHHHHhh---------------------cCCcEEEEeecccccc---hh--------------
Confidence 379999999999999999999996 5689999999976421 01
Q ss_pred EcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecC
Q 014990 237 IREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKG 316 (415)
Q Consensus 237 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~ 316 (415)
.+..++.+... ..++.+++++.+.++. + ++..++++++.+..
T Consensus 67 -------------------~~~~~~~~~~~-------------~~~i~~~~~~~v~~i~--G-~~~~v~~v~l~~~~--- 108 (126)
T d1trba2 67 -------------------ILIKRLMDKVE-------------NGNIILHTNRTLEEVT--G-DQMGVTGVRLRDTQ--- 108 (126)
T ss_dssp -------------------HHHHHHHHHHH-------------TSSEEEECSCEEEEEE--E-CSSSEEEEEEECCT---
T ss_pred -------------------HHHHHHHHhhc-------------ccceeEecceEEEEEE--C-CCCceEEEEEEECC---
Confidence 11111111111 5679999999999998 6 44568899887631
Q ss_pred CCCCcceeccCCceEEEecCeeEEeec
Q 014990 317 GGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 317 ~~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
..++.+++++|-+++++|
T Consensus 109 ---------~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 109 ---------NSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp ---------TCCCCEEEECSEEEECSC
T ss_pred ---------CCceEEEEECCEEEEEeC
Confidence 123346899999999987
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.86 E-value=1.1e-09 Score=94.46 Aligned_cols=77 Identities=10% Similarity=-0.034 Sum_probs=49.7
Q ss_pred EecCeeEEeeccCCccCCCCcc--cCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhh
Q 014990 333 LDCGMVLKSIGYKSVPVNGLPF--DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSS 410 (415)
Q Consensus 333 i~~D~vi~atG~~p~~~~~~~~--~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~ 410 (415)
..+|.+++++|..+.. .++. ...........+....+... ++++.|.+|+.||+..+.+..+ .|..+|+.+|..
T Consensus 91 ~~~~~~~ia~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~g~vigg~~~av-~a~~~g~~~a~~ 166 (196)
T d1gtea4 91 EGYKAAFIGIGLPEVL--RDPKVKEALSPIKFNRWDLPEVDPET-MQTSEPWVFAGGDIVGMANTTV-ESVNDGKQASWY 166 (196)
T ss_dssp TTCCEEEECCCCCEEC--CCHHHHHHTTTSCBCTTSSBCCCTTT-CBCSSTTEEECSGGGCSCCCHH-HHHHHHHHHHHH
T ss_pred cccceeeEEeccccCC--ccccccccccccccccccceeccccc-cCCCcccccccccccCCcchHH-HHHHHHhhhehh
Confidence 4568888899865422 1111 11112223334555556655 8899999999999987666555 478889888877
Q ss_pred ccc
Q 014990 411 LSL 413 (415)
Q Consensus 411 i~~ 413 (415)
+.+
T Consensus 167 v~r 169 (196)
T d1gtea4 167 IHK 169 (196)
T ss_dssp HHH
T ss_pred Hhh
Confidence 654
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.85 E-value=2e-09 Score=94.57 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=37.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
..|||+||||||||++||.++++.| .+|+|||+.+..||.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G--~kV~vie~~~~~GG~ 41 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGT 41 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCCe
Confidence 5799999999999999999999999 999999999888874
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.7e-08 Score=80.66 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=57.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
...+++|+|||||+.|+.+|..|++.| .+|+|+++.+.+- |. ...++.+.+.+.+++.+++++.++.+
T Consensus 19 ~~~pk~vvIvGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v 86 (125)
T d3grsa2 19 EELPGRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL--------RS--FDSMISTNCTEELENAGVEVLKFSQV 86 (125)
T ss_dssp CSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred hhcCCEEEEEcCCccHHHHHHHHhcCC--cEEEEEeeccccc--------cc--hhhHHHHHHHHHHHHCCCEEEeCCEE
Confidence 345689999999999999999999999 9999999988641 32 23467778888888899999999887
Q ss_pred c
Q 014990 96 G 96 (415)
Q Consensus 96 ~ 96 (415)
.
T Consensus 87 ~ 87 (125)
T d3grsa2 87 K 87 (125)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.82 E-value=1.5e-08 Score=79.91 Aligned_cols=91 Identities=20% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcC-CCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g-~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
...+++++|||||+.|+.+|..|.+.. .+.+|+++++.+.+. |.+ .+++...+.+.++..+++++.++.
T Consensus 15 ~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il--------~~~--d~~~~~~~~~~l~~~GI~v~~~~~ 84 (117)
T d1feca2 15 DEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--------RGF--DSELRKQLTEQLRANGINVRTHEN 84 (117)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--------TTS--CHHHHHHHHHHHHHTTEEEEETCC
T ss_pred cccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc--------ccc--cchhhHHHHHHHhhCcEEEEcCCE
Confidence 345689999999999999998776653 128999999887642 322 246778888889999999999987
Q ss_pred ece---------EEEecccc-cccCEEEEccC
Q 014990 95 LGS---------SVSLSELR-QLYHVVVLAYG 116 (415)
Q Consensus 95 v~~---------~v~~~~~~-~~~d~lvlAtG 116 (415)
+.+ .+..+++. ..+|.||+|+|
T Consensus 85 v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 85 PAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp EEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 632 23444443 47999999999
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=1.3e-08 Score=80.93 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=66.4
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
.....+++++|||||+.|+.+|..|++.| .+|+|+++...+ |. ..+++.+.+.+.+++.+++++.++
T Consensus 15 ~l~~~P~~vvIIGgG~iG~E~A~~l~~lG--~~Vtii~~~~~l---------~~--~D~~~~~~l~~~l~~~Gv~i~~~~ 81 (122)
T d1h6va2 15 SLPYCPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRSILL---------RG--FDQDMANKIGEHMEEHGIKFIRQF 81 (122)
T ss_dssp TCSSCCCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSS---------TT--SCHHHHHHHHHHHHHTTEEEEESC
T ss_pred CcccCCCeEEEECCCccHHHHHHHHhhcC--CeEEEEEechhh---------cc--CCHHHHHHHHHHHHHCCCEEEECC
Confidence 33445678999999999999999999999 999999864321 22 234677888889999999999997
Q ss_pred EeceE------------EEeccc------ccccCEEEEccC
Q 014990 94 TLGSS------------VSLSEL------RQLYHVVVLAYG 116 (415)
Q Consensus 94 ~v~~~------------v~~~~~------~~~~d~lvlAtG 116 (415)
.+... ++.... ...+|.|++|+|
T Consensus 82 ~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 82 VPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 66321 111111 125899999998
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.81 E-value=1.8e-09 Score=98.61 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|||||||||.+|+++|++|+++| .+|+|||+.+.
T Consensus 2 ~~yDvvIIGaGi~Gls~A~~La~~G--~~V~viE~~~~ 37 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDP 37 (281)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 6799999999999999999999999 99999999754
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.81 E-value=5.9e-09 Score=89.85 Aligned_cols=98 Identities=20% Similarity=0.257 Sum_probs=68.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC----CCccccC-----C--CCCCcchHHHHHHHHHHhhccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP----FGLVRSG-----V--APDHPETKIVINQFSRVVQHER 86 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~----gg~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~ 86 (415)
.+++|+||||||||++||.+|+|.+ .+++|+|+.... ++.+... . .+......++...+.+++.+++
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g 81 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFG 81 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred ccceEEEECCCHHHHHHHHHHHHcC--CcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhc
Confidence 4689999999999999999999999 999999987542 3322110 1 1223345678888888888889
Q ss_pred eEEEeceEec-------eEEEecccccccCEEEEccCC
Q 014990 87 CSFFGNVTLG-------SSVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 87 ~~~~~~~~v~-------~~v~~~~~~~~~d~lvlAtG~ 117 (415)
+++..+.... +.+.........|.+++++|.
T Consensus 82 ~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~ 119 (192)
T d1vdca1 82 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGA 119 (192)
T ss_dssp CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCE
T ss_pred ceeeeeeEEecccccCcEEecccceeeeeeeEEEEeee
Confidence 8887664321 123333333468899999996
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.80 E-value=1.6e-08 Score=80.71 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=70.1
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
.....+++++|||||+.|+.+|..+++.| .+|+++|+.+.+. |. ...++...+.+.++..+++++.++
T Consensus 21 ~l~~~p~~vvIiGgG~IG~E~A~~~~~~G--~~Vtive~~~~il--------~~--~d~~~~~~l~~~l~~~gv~~~~~~ 88 (125)
T d1ojta2 21 ALKEVPGKLLIIGGGIIGLEMGTVYSTLG--SRLDVVEMMDGLM--------QG--ADRDLVKVWQKQNEYRFDNIMVNT 88 (125)
T ss_dssp TCCCCCSEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHGGGEEEEECSC
T ss_pred CccccCCeEEEECCCHHHHHHHHHhhcCC--CEEEEEEeecccc--------cc--chhhHHHHHHHHHHHcCcccccCc
Confidence 33456789999999999999999999999 9999999887642 32 234677888888988899999998
Q ss_pred Eece--------EEEecc--c---ccccCEEEEccC
Q 014990 94 TLGS--------SVSLSE--L---RQLYHVVVLAYG 116 (415)
Q Consensus 94 ~v~~--------~v~~~~--~---~~~~d~lvlAtG 116 (415)
.+.. .+.... + ...+|+|++|+|
T Consensus 89 ~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 89 KTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp EEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred EEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 7632 122221 1 247999999999
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.80 E-value=3e-09 Score=92.15 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=63.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC---CCC-CcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV---APD-HPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
|+|+|||||++|+.+|..|++.+++.+|+++++.+.+... ..+. ..+ ......+.....+.++..+++++.++.+
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V 79 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-SAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI 79 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-GGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccccc-ccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence 6899999999999999999999888899999998765211 1110 011 1111122112233456678999888776
Q ss_pred ce------EEEecc---c---ccccCEEEEccCC
Q 014990 96 GS------SVSLSE---L---RQLYHVVVLAYGA 117 (415)
Q Consensus 96 ~~------~v~~~~---~---~~~~d~lvlAtG~ 117 (415)
.. .++..+ + ...||++|+|+|+
T Consensus 80 ~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~ 113 (198)
T d1nhpa1 80 TAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA 113 (198)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred eeEeeccccceeeecccccccccccceeeEeecc
Confidence 22 233222 1 2379999999998
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.80 E-value=1.7e-08 Score=88.68 Aligned_cols=98 Identities=18% Similarity=0.109 Sum_probs=61.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC-CCCccc-------------cCCCCCCcchHHHHHHHHHHh-h
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLVR-------------SGVAPDHPETKIVINQFSRVV-Q 83 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~-~gg~~~-------------~~~~~~~~~~~~~~~~~~~~~-~ 83 (415)
.|+|+||||||||++||.+++|.+ .++.||+++-. .|...- ..+.+..+.......+..+.+ +
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G--~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~ 79 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKG--VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 79 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCC--CcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhh
Confidence 589999999999999999999999 99999987632 221110 001111112222333333333 4
Q ss_pred ccCeEEEeceEece--------EEEeccc-ccccCEEEEccCCC
Q 014990 84 HERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGAE 118 (415)
Q Consensus 84 ~~~~~~~~~~~v~~--------~v~~~~~-~~~~d~lvlAtG~~ 118 (415)
..++.++.+.++.. .|.+.++ ...++.||||||..
T Consensus 80 ~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred hcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence 45788877665522 2334443 34789999999983
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=2e-09 Score=99.74 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=60.3
Q ss_pred eeEEEEeccccccccccCC------CCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccC-----
Q 014990 281 RELHFVFFRKPDSFLESNE------RSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV----- 349 (415)
Q Consensus 281 ~~v~~~~~~~~~~v~~~~~------~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~----- 349 (415)
.++.++.+..+++++ .+ ..+++.++...+. .+++...+.++.||+|||-.....
T Consensus 151 ~~v~~~~~~~~~~Li--~~~~~~~~~~~rv~Gv~~~~~-------------~~g~~~~~~ak~VilAtGG~~~~~~~~t~ 215 (305)
T d1chua2 151 PNIRVLERTNAVDLI--VSDKIGLPGTRRVVGAWVWNR-------------NKETVETCHAKAVVLATGGASKVYQYTTN 215 (305)
T ss_dssp TTEEEECSEEEEEEE--EGGGTTCCSSCBEEEEEEEET-------------TTTEEEEEECSEEEECCCCCGGGSSSBSC
T ss_pred cCcceeceeEEEEEE--EEcCcccccCceEEEEEEEeC-------------CCCcEEEEeecceEEeeeccccceeccCC
Confidence 456666666666554 21 1234666654331 156667899999999999543110
Q ss_pred ------CCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccc
Q 014990 350 ------NGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (415)
Q Consensus 350 ------~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~ 390 (415)
.++.+....|..+.+.+++.++++ ++|+.||+|++|++.
T Consensus 216 ~~~~TGDG~~mA~~aGa~l~~m~~iq~~~~--g~t~~~g~~a~G~~~ 260 (305)
T d1chua2 216 PDISSGDGIAMAWRAGCRVANCGGVMVDDH--GRTDVEGLYAIGEVS 260 (305)
T ss_dssp GGGCSCHHHHHHHHTTCCEECSCEEECCTT--CBCSSBTEEECGGGE
T ss_pred CCceecccEeeccccceeeEecceeEECCc--ccCCCCCceecccEE
Confidence 001122345777888899999997 889999999999874
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=7.8e-09 Score=90.58 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=59.9
Q ss_pred EEEecCeeEEeeccCCccCCCCcccC-----CCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHH
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDN-----HKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAE 405 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~-----~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~ 405 (415)
+.+.++.+++|||.+|.. +.+|..+ ..++.++++|++.+|.. ++|+.|+||++||+..+.- +...+..+|+
T Consensus 126 ~~~~~~~~iiatG~~p~i-p~ip~~~~l~l~~~gv~~~~~~~i~~d~~--~~t~~~~i~~iG~g~~g~e-la~~~~~~G~ 201 (217)
T d1gesa1 126 ETITADHILIATGGRPSH-PREPANDNINLEAAGVKTNEKGYIVVDKY--QNTNIEGIYAVGDNTGAVE-LTPVAVAAGR 201 (217)
T ss_dssp EEEEEEEEEECCCEEECC-CEEESCTTSCHHHHTCCBCTTSCBCCCTT--SBCSSTTEEECSGGGTSCC-CHHHHHHHHH
T ss_pred ceeeeeeeeeecCccccC-CCCCCcCCcccccccEEEcCCccEeeCch--hccCCCcEEEECCCccHHH-HHHHHHHHHH
Confidence 478999999999988732 2233222 23567888899999986 7899999999999986553 4446899999
Q ss_pred HHHhhccc
Q 014990 406 ETVSSLSL 413 (415)
Q Consensus 406 ~~a~~i~~ 413 (415)
.++.++..
T Consensus 202 ~v~~~~~~ 209 (217)
T d1gesa1 202 RLSERLFN 209 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99987653
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.78 E-value=3.3e-08 Score=78.73 Aligned_cols=88 Identities=24% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
+..++|+|||||+.|+.+|..|++.| .+|+++|+.+.+. +.. ...++...+.+.++..+++++.++.+.
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g--~~Vtlie~~~~~l--------~~~-~d~~~~~~~~~~l~~~gv~~~~~~~v~ 96 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAG--KKVTVIDILDRPL--------GVY-LDKEFTDVLTEEMEANNITIATGETVE 96 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSTT--------TTT-CCHHHHHHHHHHHHTTTEEEEESCCEE
T ss_pred cCCCEEEEECChHHHHHHHHHhhccc--eEEEEEEecCccc--------ccc-cchhhHHHHHHHhhcCCeEEEeCceEE
Confidence 45689999999999999999999999 9999999987642 211 224566777888888899999998763
Q ss_pred eE--------EEecccccccCEEEEcc
Q 014990 97 SS--------VSLSELRQLYHVVVLAY 115 (415)
Q Consensus 97 ~~--------v~~~~~~~~~d~lvlAt 115 (415)
.- +..+.....+|.||+|.
T Consensus 97 ~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 97 RYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp EEECSSBCCEEEESSCEEECSEEEECS
T ss_pred EEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 31 22222334688888874
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.78 E-value=2.7e-08 Score=78.48 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
++++|+|||||+.|+.+|..|++.| .+|+|+++.+.+. +.+ .+++.+.+.+.+++.+++++.++.+..
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g--~~Vtlv~~~~~il--------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~ 88 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLG--IDSYIFARGNRIL--------RKF--DESVINVLENDMKKNNINIVTFADVVE 88 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTT--CEEEEECSSSSSC--------TTS--CHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHhcc--ccceeeehhcccc--------ccc--cHHHHHHHHHHHHhCCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999988641 322 346777888888888999999986632
Q ss_pred ---------EEEeccccc--ccCEEEEcc
Q 014990 98 ---------SVSLSELRQ--LYHVVVLAY 115 (415)
Q Consensus 98 ---------~v~~~~~~~--~~d~lvlAt 115 (415)
.++.++++. .||.||+|.
T Consensus 89 i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 89 IKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 244444433 579999884
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.77 E-value=2.1e-09 Score=94.67 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=34.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
.++||+||||||||++||.++++.| .+|+|||++. +||
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G--~~V~liE~~~-~GG 41 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEGQA-LGG 41 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSC-TTH
T ss_pred cccCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCC-CCC
Confidence 4689999999999999999999999 9999999875 343
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.75 E-value=9.4e-09 Score=93.22 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++.++|+|||||.+|+++|++|+++| .+|+|||+..
T Consensus 2 ~~~~DvvIIGaGi~Gls~A~~La~~G--~~V~vlE~~~ 37 (276)
T d1ryia1 2 KRHYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGT 37 (276)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 35689999999999999999999999 9999999975
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.74 E-value=1.3e-09 Score=91.52 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=58.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc--cCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR--SGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
||+|||||++|+.+|..|++ + .+|+|+++.+.+..... ............+...........+++++.++.+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~--~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 78 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-T--YEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI 78 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-T--SEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred eEEEECCcHHHHHHHHHHHc-C--CCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence 79999999999999999976 5 79999998875432110 000011111111112223344556788877665521
Q ss_pred -----EEEecccccccCEEEEccCC
Q 014990 98 -----SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 -----~v~~~~~~~~~d~lvlAtG~ 117 (415)
.+..+.....||+||+|+|.
T Consensus 79 ~~~~~~~~~~~~~i~~D~li~a~G~ 103 (167)
T d1xhca1 79 DRGRKVVITEKGEVPYDTLVLATGA 103 (167)
T ss_dssp ETTTTEEEESSCEEECSEEEECCCE
T ss_pred ccccccccccccccccceeEEEEEe
Confidence 23334445689999999998
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.7e-09 Score=95.11 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc---cccCC----CC------------C-----CcchH
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGV----AP------------D-----HPETK 72 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~---~~~~~----~~------------~-----~~~~~ 72 (415)
|..+++||||||+||+.+|..|++.+++.+|++|++.+.+... +.+.. .+ . +..+.
T Consensus 2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213)
T d1m6ia1 2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP 81 (213)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCCh
Confidence 4678899999999999999999999988899999987553210 00000 00 0 00000
Q ss_pred HH--HHHHHHHhhccCeEEEeceEec------eEEEecccc-cccCEEEEccCCCCCCCCCCC
Q 014990 73 IV--INQFSRVVQHERCSFFGNVTLG------SSVSLSELR-QLYHVVVLAYGAESDRALGIP 126 (415)
Q Consensus 73 ~~--~~~~~~~~~~~~~~~~~~~~v~------~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~ 126 (415)
++ .......+++.+++++.++.|. +.++++++. ..||+||+|||+ .+..++++
T Consensus 82 ~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~-~~~~~~l~ 143 (213)
T d1m6ia1 82 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGG-TEPNVELA 143 (213)
T ss_dssp GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCE-EEECCTTH
T ss_pred hhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeee-ecchhhhh
Confidence 00 0111223456688888887662 246666664 589999999998 33333443
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.72 E-value=5.2e-08 Score=76.78 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=58.4
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
.....+++|+|||||+.|+.+|..|.+.| .+|+|+|+.+.+. |. ...++...+.+.+++.+++++.++
T Consensus 17 ~~~~~p~~v~IiGgG~ig~E~A~~l~~~G--~~Vtlve~~~~il--------~~--~d~~~~~~l~~~l~~~GI~i~~~~ 84 (117)
T d1ebda2 17 NLGEVPKSLVVIGGGYIGIELGTAYANFG--TKVTILEGAGEIL--------SG--FEKQMAAIIKKRLKKKGVEVVTNA 84 (117)
T ss_dssp TCSSCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEEESE
T ss_pred ChhhcCCeEEEECCCccceeeeeeecccc--cEEEEEEecceec--------cc--ccchhHHHHHHHHHhcCCEEEcCC
Confidence 33456689999999999999999999999 9999999998752 22 124677788888888899999998
Q ss_pred Eec
Q 014990 94 TLG 96 (415)
Q Consensus 94 ~v~ 96 (415)
.+.
T Consensus 85 ~v~ 87 (117)
T d1ebda2 85 LAK 87 (117)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=5.4e-08 Score=77.30 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
..+++++|||||+.|+.+|..|++.| .+|+|+++.+.+. |. ...++...+.+.+++.+++++.++.+.
T Consensus 21 ~~p~~~vIiG~G~ig~E~A~~l~~lG--~~Vtii~~~~~~l--------~~--~d~ei~~~l~~~l~~~GV~i~~~~~v~ 88 (122)
T d1v59a2 21 EIPKRLTIIGGGIIGLEMGSVYSRLG--SKVTVVEFQPQIG--------AS--MDGEVAKATQKFLKKQGLDFKLSTKVI 88 (122)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred cCCCeEEEECCCchHHHHHHHHHhhC--cceeEEEeccccc--------hh--hhhhhHHHHHHHHHhccceEEeCCEEE
Confidence 35689999999999999999999999 9999999988752 32 234677888888988999999998774
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.71 E-value=6.4e-08 Score=76.62 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=66.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+.++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. |. ...++...+.+.++..+++++.++.+..
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~~g--~~vt~i~~~~~~l--------~~--~d~~~~~~~~~~l~~~gI~v~~~~~v~~ 88 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNATG--RRTVMLVRTEPLK--------LI--KDNETRAYVLDRMKEQGMEIISGSNVTR 88 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTT--------TC--CSHHHHHHHHHHHHHTTCEEESSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcc--hhheEeeccchhh--------cc--cccchhhhhhhhhhccccEEEcCCEEEE
Confidence 4689999999999999999999999 9999999887542 22 1235667778888888999999887632
Q ss_pred EEE-------------ecc-cccccCEEEEccC
Q 014990 98 SVS-------------LSE-LRQLYHVVVLAYG 116 (415)
Q Consensus 98 ~v~-------------~~~-~~~~~d~lvlAtG 116 (415)
-.. ..+ ....+|+||+|+|
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 89 IEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 111 111 2247999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=5.2e-08 Score=79.08 Aligned_cols=89 Identities=18% Similarity=0.092 Sum_probs=67.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH----cCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK----AHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~----~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
..++++|||||+.|+.+|..|++ .+ .+|+++++++.+... ..+.++...+.+.++..|++++.++
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g--~~Vt~i~~~~~~l~~---------~~~~~~~~~~~~~l~~~GV~~~~~~ 104 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALG--TEVIQLFPEKGNMGK---------ILPEYLSNWTMEKVRREGVKVMPNA 104 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHT--CEEEEECSSSSTTTT---------TSCHHHHHHHHHHHHTTTCEEECSC
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcC--CEEEEecccccCCcc---------cCCHHHHHHHHHHHHhCCcEEEeCC
Confidence 46789999999999999999964 45 899999988764311 1234566778888899999999988
Q ss_pred Eece--------EEEecccc-cccCEEEEccCC
Q 014990 94 TLGS--------SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 94 ~v~~--------~v~~~~~~-~~~d~lvlAtG~ 117 (415)
.+.. .++.++++ ..+|.||+|+|.
T Consensus 105 ~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 105 IVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred EEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 6632 25555554 489999999993
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=3.9e-08 Score=91.22 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=64.8
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC-----ccCC----
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS-----VPVN---- 350 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p-----~~~~---- 350 (415)
..+|+++.++.+++++ . +++++.++...+. .+|+...+.++.||+|||-.. .+.+
T Consensus 147 ~~~v~i~~~~~v~~Ll--~-d~g~v~Gvv~~~~-------------~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~t 210 (311)
T d1kf6a2 147 FPQIQRFDEHFVLDIL--V-DDGHVRGLVAMNM-------------MEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVT 210 (311)
T ss_dssp CTTEEEEETEEEEEEE--E-ETTEEEEEEEEET-------------TTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCS
T ss_pred cCcceeEeeeEeeeeE--e-cCCcceeEEEEEc-------------CCCcEEEEECCEEEEcCCCccccccccCCCCCcC
Confidence 4468888888888887 5 5777777765432 256777899999999999432 1110
Q ss_pred --CCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccc
Q 014990 351 --GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (415)
Q Consensus 351 --~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~ 390 (415)
++.+....|..+.+.+++..+++ ..++.+++|+.|++.
T Consensus 211 GDG~~mA~~aGa~l~dme~iq~~p~--~~~~~~~~~~~~~~~ 250 (311)
T d1kf6a2 211 GDGMGMALSHGVPLRDMGGIETDQN--CETRIKGLFAVGECS 250 (311)
T ss_dssp CHHHHHHHTTTCCEESCCEEECCTT--SBCSSBTEEECGGGE
T ss_pred cHHHHHHHhcccceeeccccccccc--chhcccCCCcCccee
Confidence 11133355666666788888886 678899999999875
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=7.4e-09 Score=88.13 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=60.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCCc--chHHHHHHHHHHhhccCeEEEece
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP--ETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
|+|+||||||+|++||.+++|.| .+|+|||+. +|+.+... ..+..+ ....+...+...++++........
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G--~~v~iie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKG--IRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CcEEEECcCHHHHHHHHHHHHcC--CeEEEEEEe--cCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccc
Confidence 79999999999999999999999 999999975 44433211 112221 224455566677777776665544
Q ss_pred EeceEE------------EecccccccCEEEEccCC
Q 014990 94 TLGSSV------------SLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 94 ~v~~~v------------~~~~~~~~~d~lvlAtG~ 117 (415)
...... .........+.+++++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 113 (184)
T d1fl2a1 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA 113 (184)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE
T ss_pred eeeeecccccccceeeeeeecceeeecccccccccc
Confidence 332211 111122356789999996
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.66 E-value=6.5e-08 Score=87.26 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=38.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
.++.++|+||||||||+.+|..+++.| .+|++||+.+.+||.
T Consensus 39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G--~kv~vve~~~~lGG~ 80 (261)
T d1mo9a1 39 DPREYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGGS 80 (261)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSCH
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCccccc
Confidence 346789999999999999999999999 999999999888773
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.64 E-value=1.3e-07 Score=74.44 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=66.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~-~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
...+++++|||||+.|+.+|..|.+.+. +.+|+|+++.+.+- |.+ ..++...+.+.+++.|++++.++.
T Consensus 17 ~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL--------~~~--d~~~~~~l~~~l~~~GV~v~~~~~ 86 (117)
T d1aoga2 17 PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL--------RGF--DHTLREELTKQLTANGIQILTKEN 86 (117)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS--------TTS--CHHHHHHHHHHHHHTTCEEEESCC
T ss_pred hhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh--------ccc--chHHHHHHHHHHHhcCcEEEcCCE
Confidence 3456899999999999999988777652 36899999877541 332 346677888889999999999976
Q ss_pred ece---------EEEecccc-cccCEEEEcc
Q 014990 95 LGS---------SVSLSELR-QLYHVVVLAY 115 (415)
Q Consensus 95 v~~---------~v~~~~~~-~~~d~lvlAt 115 (415)
+.. .++.++++ ..+|.||+|.
T Consensus 87 v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 87 PAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred EEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 532 24455544 4789999874
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.62 E-value=1.5e-08 Score=93.74 Aligned_cols=45 Identities=36% Similarity=0.442 Sum_probs=41.0
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
.++.++++|+|||||+|||+||.+|+++| ++|+|||+++.+||.+
T Consensus 25 ~~~~~pkkV~IIGaG~aGLsaA~~L~~~G--~~V~vlE~~~~~GG~~ 69 (370)
T d2iida1 25 KATSNPKHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRV 69 (370)
T ss_dssp CCCSSCCEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTC
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCee
Confidence 34567889999999999999999999999 9999999999999864
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.7e-08 Score=93.29 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=40.4
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
|+.++.+|||||||+|||+||..|++.| ++|+|+|+++.+||..
T Consensus 1 p~~~~~kViVIGaG~aGL~aA~~L~~~G--~~V~VlEa~~r~GGr~ 44 (449)
T d2dw4a2 1 PTKKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRV 44 (449)
T ss_dssp CSSCCCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTC
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCcccE
Confidence 4567889999999999999999999999 9999999999999854
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.59 E-value=5.7e-08 Score=87.07 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=34.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
|+.++|+||||||||+++|..|++.| ++|+|||+.+.+
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~ 39 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRDAG--VDVDVYERSPQP 39 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSS
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCC
Confidence 56789999999999999999999999 999999997653
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.58 E-value=1.9e-08 Score=91.59 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
.|+|+|||||+|||+||.+|++.| ++|+|||+++.+||..
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G--~~V~vlE~~~~~GG~~ 40 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKL 40 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CCEEEEeCCCCCcCce
Confidence 378999999999999999999999 9999999999999964
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.58 E-value=3.6e-08 Score=90.70 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
.||||||||.+|+++|.+|+++| . +|+|+|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G--~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcC--CCcEEEEeCCC
Confidence 48999999999999999999998 6 699999974
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=2.5e-08 Score=87.96 Aligned_cols=44 Identities=18% Similarity=0.065 Sum_probs=40.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..+.+||||||||++|++||..|++.| .+|+|||+++.+||...
T Consensus 2 m~~~yDviViGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~GG~~~ 45 (297)
T d2bcgg1 2 IDTDYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAA 45 (297)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCCcceE
Confidence 357899999999999999999999999 99999999999998753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.55 E-value=2.6e-08 Score=88.57 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=36.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~~~ 61 (415)
+||+|||||+|||+||..|++.| + +|+|||+++.+||...
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G--~~~V~vlE~~~~~GG~~~ 41 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMH 41 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSC
T ss_pred CCEEEECCcHHHHHHHHHHHhCC--CCcEEEEECCCCCCceEE
Confidence 47999999999999999999998 7 6999999999998653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.54 E-value=1.6e-07 Score=74.50 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=57.8
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
.....+++++|||||+.|+.+|..+.+.| .+|+++++.+.+. |. ...++...+.+.+++.+++++.++
T Consensus 20 ~l~~~p~~~viiG~G~iglE~A~~~~~~G--~~Vtvi~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~ 87 (123)
T d1dxla2 20 ALSEIPKKLVVIGAGYIGLEMGSVWGRIG--SEVTVVEFASEIV--------PT--MDAEIRKQFQRSLEKQGMKFKLKT 87 (123)
T ss_dssp TCSSCCSEEEESCCSHHHHHHHHHHHHHT--CEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHSSCCEECSE
T ss_pred CccccCCeEEEEccchHHHHHHHHHHhcC--CeEEEEEEccccC--------ch--hhhcchhhhhhhhhcccceEEcCC
Confidence 33456789999999999999999999999 9999999988752 22 224677788888888899999998
Q ss_pred Ee
Q 014990 94 TL 95 (415)
Q Consensus 94 ~v 95 (415)
.+
T Consensus 88 ~v 89 (123)
T d1dxla2 88 KV 89 (123)
T ss_dssp EE
T ss_pred ce
Confidence 76
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.50 E-value=3.6e-08 Score=89.48 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=37.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
++|+|||||+|||+||.+|++.| ++|+|+|+++.+||..
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GG~~ 39 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAV 39 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTC
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCceE
Confidence 58999999999999999999999 9999999999999864
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.41 E-value=4.8e-07 Score=80.89 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=61.5
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCcc-CC----CCcc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP-VN----GLPF 354 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~-~~----~~~~ 354 (415)
+.++++++++.++++. ..+++....+... .+..++.||.||+|||-.+-+ +. ++.+
T Consensus 121 ~~gV~i~~~~~V~~i~--~~~~~~~v~~~~~-----------------~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~ 181 (253)
T d2gqfa1 121 KYGAKILLRSEVSQVE--RIQNDEKVRFVLQ-----------------VNSTQWQCKNLIVATGGLSMPGLGATPFGYQI 181 (253)
T ss_dssp HHTCEEECSCCEEEEE--ECCSCSSCCEEEE-----------------ETTEEEEESEEEECCCCSSCGGGTCCSHHHHH
T ss_pred HcCCCeecCceEEEEE--eecCCceeEEEEe-----------------cCCEEEEeCEEEEcCCcccccccCCCchHHHH
Confidence 5578999998888775 2112211111111 122379999999999976522 10 0112
Q ss_pred cCCCCccccC-----CCce---eeccCCCCCc-ccCCeeeee---ccccCC-ccchhhhhhhHHHHHhhccc
Q 014990 355 DNHKGIVPNI-----RGRV---LKNISGDSSQ-VENGLYVCG---WLKRGP-TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 355 ~~~~g~~~~~-----~G~i---~v~~~~~~~t-~~p~vfaiG---D~~~~~-~~~~~~a~~~g~~~a~~i~~ 413 (415)
....+...-+ .|.+ .+|+.+ |++ .+||+|++| |+.... ..-++.|...|..|++.|.+
T Consensus 182 a~~~~~~i~~~~~~~~ggv~~~~i~~~t-~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 182 AEQFGIPVIPPRAVTMGGVDTKVISSKT-MESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 252 (253)
T ss_dssp HHHTTCCEEEEEEEEEEEECGGGBCTTT-CBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccccccccccccCCCCcccccCccc-hhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence 2222221110 1222 244444 544 689999999 432211 12244688899998888754
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.41 E-value=8.5e-08 Score=81.49 Aligned_cols=100 Identities=21% Similarity=0.161 Sum_probs=56.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchH-HHHHHHHHHhhccCeEEEeceEece-
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETK-IVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.+|+|||||++|+.+|..|++.+.+.+++++++.... .+............ +............+++++.+..+..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i 81 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER--PYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF 81 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC--CBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEeccccc--chhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccc
Confidence 4599999999999999999999955666666554432 11100001000000 0000011223345788887765421
Q ss_pred -----EEEecccc-cccCEEEEccCCCCCCC
Q 014990 98 -----SVSLSELR-QLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -----~v~~~~~~-~~~d~lvlAtG~~~~~~ 122 (415)
.+.+.+++ ..||.||+|+|. .|+.
T Consensus 82 ~~~~~~~~~~~g~~~~~D~vi~a~G~-~p~~ 111 (183)
T d1d7ya1 82 DPQAHTVALSDGRTLPYGTLVLATGA-APRA 111 (183)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCE-EECC
T ss_pred ccccceeEecCCcEeeeeeEEEEEEE-Eccc
Confidence 34444443 489999999998 4443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.38 E-value=1.4e-07 Score=87.52 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=38.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+.++|+|||||++|++||..|++.| .+|+|+|+.+.+||..
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G--~~V~viEk~~~iGG~~ 41 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNS 41 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGG
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCC--CCEEEEECCCCCcCee
Confidence 4689999999999999999999998 9999999999999965
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.36 E-value=1.5e-07 Score=82.09 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+||+||||||||++||.++++.| .+|+|||+...
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G--~kV~vIEk~~~ 37 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKGNL 37 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEecCCC
Confidence 479999999999999999999999 99999998764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.36 E-value=8.8e-08 Score=86.97 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=50.2
Q ss_pred CCceEEEecCeeEEeeccCCcc-C----CC--C--cccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccch
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVP-V----NG--L--PFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGII 397 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~-~----~~--~--~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~ 397 (415)
.++.+.+++|.||+|++...-. + .. + ++..... ..+.++.+..++. ++|+.||||++||+..+++ +
T Consensus 277 ~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~t~~pglf~aGd~~~g~~--~ 351 (373)
T d1seza1 277 KRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVY-GHNYDSVLDAIDK--MEKNLPGLFYAGNHRGGLS--V 351 (373)
T ss_dssp SSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCC-CTTHHHHHHHHHH--HHHHSTTEEECCSSSSCSS--H
T ss_pred CCCceEEECCEEEECCchHHhhhcccccCCCccchhhhcccc-ccCCCcEeecccc--cCCCCCCEEEEecCCCchh--H
Confidence 3455689999999999754311 0 00 0 0000000 0111122333333 6789999999999986653 3
Q ss_pred hhhhhhHHHHHhhcccc
Q 014990 398 ATNLYCAEETVSSLSLI 414 (415)
Q Consensus 398 ~~a~~~g~~~a~~i~~~ 414 (415)
..|+.+|+.||..|++.
T Consensus 352 ~~A~~~G~~aA~~i~~~ 368 (373)
T d1seza1 352 GKALSSGCNAADLVISY 368 (373)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999998764
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.30 E-value=2.2e-07 Score=85.52 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+++|||||||++|+++|..|++.| .+|+|||+.+.+||..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g--~~V~iiEk~~~iGG~~ 40 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNA 40 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGG
T ss_pred CccEEEECCcHHHHHHHHHHHhCC--CcEEEEECCCCcccce
Confidence 368999999999999999999998 9999999999999965
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.2e-07 Score=86.34 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=36.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+|+|||||+|||+||.+|++.| ++|+|+|+++.+||..
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G--~~V~VlE~~~~~GGr~ 38 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRT 38 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTT--CCEEEEESSSSSBTTC
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCccee
Confidence 6999999999999999999999 9999999999999854
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.28 E-value=4.1e-07 Score=80.80 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=34.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..+++|||||||++|+++|.+|+++| .+|+||||....
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G--~~V~vier~~~~ 41 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKG--YSVHILARDLPE 41 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSCTT
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCC--CCEEEEeCCCCC
Confidence 46779999999999999999999999 999999997643
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.26 E-value=9.9e-07 Score=67.99 Aligned_cols=59 Identities=20% Similarity=0.141 Sum_probs=43.2
Q ss_pred CCCCCCC-----C-CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHH
Q 014990 123 LGIPGED-----L-IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWT 196 (415)
Q Consensus 123 ~~i~g~~-----~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~ 196 (415)
|.+||++ . ..++|+..|.... ...+|+|+|||+|+||+|+|.+|++
T Consensus 2 P~ipGl~~f~~~~~G~i~Hs~~y~~~~------------~f~gK~VlVVG~g~Sa~dia~~l~~---------------- 53 (107)
T d2gv8a2 2 PNIKGLDEYAKAVPGSVLHSSLFREPE------------LFVGESVLVVGGASSANDLVRHLTP---------------- 53 (107)
T ss_dssp CCCBTHHHHHHHSTTSEEEGGGCCCGG------------GGTTCCEEEECSSHHHHHHHHHHTT----------------
T ss_pred cCCCChHHHhccCCccEEECCcCcchh------------hcCCCeEEEECCCCCHHHHHHHHHH----------------
Confidence 6788854 1 3577776655321 2279999999999999999999996
Q ss_pred HhhcCCcceEEEEeecCc
Q 014990 197 ALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 197 ~~~~~~~~~v~l~~r~~~ 214 (415)
.++++++++|+..
T Consensus 54 -----~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 54 -----VAKHPIYQSLLGG 66 (107)
T ss_dssp -----TSCSSEEEECTTC
T ss_pred -----hcCEEEEEEecCc
Confidence 4567777777653
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.26 E-value=3.1e-07 Score=83.46 Aligned_cols=44 Identities=36% Similarity=0.439 Sum_probs=39.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCCccccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg~~~~~ 63 (415)
..++|+||||||||++||.+|+++ | ++|+|||+.+.+||.+.++
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G--~~V~vlE~~~~~GG~~~~~ 76 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPN--VQVAIIEQSVSPGGGAWLG 76 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTT--SCEEEEESSSSCCTTTTCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccC--CeEEEEecCCCCCCceeec
Confidence 568899999999999999999874 8 9999999999999876643
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.22 E-value=4.7e-07 Score=86.13 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=36.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHH------cCCCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLK------AHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~------~g~~~~v~lie~~~~~gg~~~ 61 (415)
.+|||||||||||++||..|++ .| ++|+||||...+|....
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~G--l~VlllEK~~~pG~k~~ 78 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAHIGAHTL 78 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSSTTTTCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCC--CEEEEEcCCCCCCCCcc
Confidence 4799999999999999999998 56 99999999998876544
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.18 E-value=1.1e-05 Score=72.05 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=39.1
Q ss_pred ceEEEecCeeEEeeccCCc----cCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccc
Q 014990 329 EFEDLDCGMVLKSIGYKSV----PVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLK 390 (415)
Q Consensus 329 ~~~~i~~D~vi~atG~~p~----~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~ 390 (415)
+.+.+.+|.||+|||.+|. .++.+.+ +..++. +.++.+.+|.. .++...++|++||+.
T Consensus 135 ~~~~i~a~~iiIATGs~P~~~~~~~~~~~l-~~~~i~-ts~~~~~~d~~--~~t~Vig~gaiGdv~ 196 (259)
T d1onfa1 135 NEEILEGRNILIAVGNKPVGRSPDTENLKL-EKLNVE-TNNNYIVVDEN--QRTSVNNIYAVGDCC 196 (259)
T ss_dssp -----CBSSEEECCCCCBCCBCCTTTTSSC-TTTTCC-BSSSCEEECTT--CBCSSSSEEECSTTE
T ss_pred ceEEEeeeeEEEecCCCCcccccccccccc-ccceee-ecccccccccC--CceeEeeEEEEEEee
Confidence 4458999999999999983 3344433 233444 44677777765 678999999999986
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=3e-06 Score=71.39 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
.+|+|+|||+|++|+++|..|.+ .| .+|+++.+.+.+
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~--------------------~G-~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAA--------------------RG-HQVTLFDAHSEI 78 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESSSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHh--------------------hc-cceEEEeccCcc
Confidence 68999999999999999999986 34 699999998654
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.16 E-value=7.3e-07 Score=82.28 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=40.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
..++|+||||||||++||.+|+++.++++|+|||+++.+||.+.++
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG 94 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEec
Confidence 4678999999999999999999874449999999999999987654
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.14 E-value=2.5e-06 Score=71.83 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=29.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+.+|||||||++|+.+|..|++.+++..|+++++.+
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~ 38 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT 38 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence 4678999999999999999999999444555555543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.12 E-value=3.7e-06 Score=74.40 Aligned_cols=111 Identities=24% Similarity=0.275 Sum_probs=62.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCC-----Ccc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNG-----LPF 354 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~-----~~~ 354 (415)
+.|+++++++.++.+. . +++.+..+... ++ +.+.+|.||+|+|....+-.+ +.+
T Consensus 122 ~~gv~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g--~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~ 180 (251)
T d2i0za1 122 DLGVKIRTNTPVETIE--Y-ENGQTKAVILQ----------------TG--EVLETNHVVIAVGGKSVPQTGSTGDGYAW 180 (251)
T ss_dssp HTTCEEECSCCEEEEE--E-ETTEEEEEEET----------------TC--CEEECSCEEECCCCSSSGGGSCSSHHHHH
T ss_pred HcCCcccCCcEEEEEE--E-ECCEEEEEEeC----------------CC--CeEecCeEEEccCCccccccCCCcccchh
Confidence 5579999999888886 4 35555444332 22 379999999999976522100 112
Q ss_pred cCCCCccccCC--Cce---eeccCCCCCcccCCeeeeecccc---C-CccchhhhhhhHHHHHhhc
Q 014990 355 DNHKGIVPNIR--GRV---LKNISGDSSQVENGLYVCGWLKR---G-PTGIIATNLYCAEETVSSL 411 (415)
Q Consensus 355 ~~~~g~~~~~~--G~i---~v~~~~~~~t~~p~vfaiGD~~~---~-~~~~~~~a~~~g~~~a~~i 411 (415)
....+..+... +.+ ..++........|++|+.|++.. . ....+..|...|+.++..+
T Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~ 246 (251)
T d2i0za1 181 AEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTA 246 (251)
T ss_dssp HHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHH
T ss_pred cccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHH
Confidence 22222222211 111 11222213457899999998852 1 1122346788999888765
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.06 E-value=1.9e-06 Score=77.23 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg 58 (415)
+.+|+||||||||+++|..|++.| . +|+|+|+.+.+..
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~G--i~~V~V~Er~~~~~~ 39 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEIRP 39 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSCCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CCeEEEEeCCCCCCC
Confidence 468999999999999999999998 7 8999999887543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.99 E-value=2e-06 Score=78.07 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=32.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G--~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 47999999999999999999999 99999999864
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.99 E-value=3.3e-05 Score=71.40 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=30.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCc-ceEEEEeecCcc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI-RKVYLVGRRGPV 215 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~r~~~~ 215 (415)
=|+|+|||+|++|+-+|..|++ .+. .+|+++.|+..+
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~--------------------~~~~~~v~vfEk~~~i 41 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLA--------------------EKAFDQVTLFERRGSP 41 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--------------------TTCCSEEEEECSSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHH--------------------hCCCCCEEEEECCCCC
Confidence 4899999999999999999875 232 589999998543
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.93 E-value=1.9e-05 Score=64.70 Aligned_cols=67 Identities=15% Similarity=0.042 Sum_probs=50.3
Q ss_pred CCCeEEEE--CCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 18 NPLRVCVV--GSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 18 ~~~~VvII--GgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
....|+|+ |||+.|+.+|..|++.| .+|+|+++.+.++.... + .....+.+.+.+.+++++.++.+
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G--~~Vtlv~~~~~~~~~~~----~------~~~~~~~~~l~~~GV~i~~~~~v 105 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAG--HEVTIVSGVHLANYMHF----T------LEYPNMMRRLHELHVEELGDHFC 105 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTT--CEEEEEESSCTTTHHHH----T------TCHHHHHHHHHHTTCEEEETEEE
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcC--CeEEEEecCCccccccc----h------hHHHHHHHHHhhccceEEeccEE
Confidence 45566666 99999999999999999 99999998876532221 1 12345566667789999999887
Q ss_pred c
Q 014990 96 G 96 (415)
Q Consensus 96 ~ 96 (415)
.
T Consensus 106 ~ 106 (156)
T d1djqa2 106 S 106 (156)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.86 E-value=2e-05 Score=71.96 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=29.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..-.|+|||+|++|+-+|..|.+ .|. +++++.+.+.
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~--------------------~G~-~v~i~Ek~~~ 41 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRE--------------------LGR-SVHVIETAGD 41 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHH--------------------TTC-CEEEECSSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHh--------------------CCC-CEEEEEcCCC
Confidence 34579999999999999999986 454 7889988743
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.81 E-value=1e-05 Score=70.64 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
+.|||+||||||||++||.++++.+ . +|+|+|+..
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g--~k~V~iie~~~ 37 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLY--KKRVAVIDVQM 37 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTS--CCCEEEEESCS
T ss_pred CccCEEEECCCHHHHHHHHHHHHcC--CCEEEEEEeec
Confidence 6799999999999999999999987 6 578888753
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.78 E-value=7.2e-06 Score=76.01 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHH-----HcCCCceEEEEcCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTL-----KAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~-----~~g~~~~v~lie~~~~~g 57 (415)
+..++|+||||||+|+++|..|+ +.| ++|+|||+.+.+.
T Consensus 5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G--~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSSCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhcccccCC--CcEEEEcCCCCCC
Confidence 35689999999999999999996 466 9999999987653
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=7.9e-05 Score=61.14 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.9
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcC
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAH 42 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g 42 (415)
.+....++|+|||||+.|+-+|..+.+.|
T Consensus 24 ~~~~~gkrVvVIGgG~~g~d~a~~~~r~G 52 (162)
T d1ps9a2 24 DKAPVGNKVAIIGCGGIGFDTAMYLSQPG 52 (162)
T ss_dssp SCCCCCSEEEEECCHHHHHHHHHHHTCCS
T ss_pred CccccCCceEEEcCchhHHHHHHHHHHcC
Confidence 34456889999999999999999999998
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.72 E-value=1.3e-05 Score=69.77 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=37.3
Q ss_pred CCCCCCCCCC-CC-CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhc
Q 014990 120 DRALGIPGED-LI-GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 120 ~~~~~i~g~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
|+.|.+||.+ ++ .++|+.+|-. .. ....+|+|+|||+|.||+|+|.++++
T Consensus 2 P~iP~~pG~e~F~G~v~HS~~~~~---~~--------~~~~gK~V~VvG~G~Sa~dia~~~~~ 53 (235)
T d1w4xa2 2 PQLPNFPGLKDFAGNLYHTGNWPH---EP--------VDFSGQRVGVIGTGSSGIQVSPQIAK 53 (235)
T ss_dssp CCCCCCTTGGGCCSEEEEGGGCCS---SC--------CCCBTCEEEEECCSHHHHHHHHHHHH
T ss_pred CCCCCCCChhhCCCcEEecCcCCC---CC--------CCCCCCEEEEECCCccHHHHHHHHHh
Confidence 6788999987 33 5666665421 11 11279999999999999999999986
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.67 E-value=1.7e-05 Score=74.02 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=34.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
...+||||||+|+||+.+|.+|++.| .+|+|+|++....
T Consensus 2 d~~yDviIVGsG~aG~v~A~~La~~G--~kVlvLEaG~~~~ 40 (379)
T d2f5va1 2 DIKYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEIDS 40 (379)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCS
T ss_pred CCcccEEEECcCHHHHHHHHHHhhCC--CeEEEEecCCCCC
Confidence 35789999999999999999999998 9999999976544
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=6.1e-06 Score=76.51 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=36.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
+.++|+|||+|+||++||.+++++| .+|+|+||.+..++.
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G--~~V~lleK~~~~gg~ 45 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPTRSH 45 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTT--CCCEEECSSCGGGSG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcC--CeEEEEeCCCCCCCc
Confidence 5789999999999999999999999 999999998776553
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.64 E-value=2.1e-05 Score=73.16 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~~gg 58 (415)
..+|||||+|+||++||.+|++.+ ++.+|+|+||.+..++
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg 62 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence 568999999999999999998631 2399999999876554
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=3.2e-05 Score=67.31 Aligned_cols=71 Identities=30% Similarity=0.336 Sum_probs=39.0
Q ss_pred ecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhh
Q 014990 334 DCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSS 410 (415)
Q Consensus 334 ~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~ 410 (415)
++|.+++|||..+......+-.. ..+.......... .....++.+..|+...++..++..++.++...+..
T Consensus 89 ~~d~v~~a~Ga~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~vvg~~~~~a~~~a~~ 159 (230)
T d1cjca2 89 AYHAVVLSYGAEDKSRPIDPSVP-----FDPKLGVVPNMEG-RVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQI 159 (230)
T ss_dssp HSSEEEECCCCCEECCCCCTTSC-----CBTTTTBCCEETT-EETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hhceEEEEeeccccccccccccc-----ccccccccccccc-eeecccccccccccccCceeEEeccchhhHHHHHH
Confidence 47999999998764422211111 1111111111110 23456788999988777766665566666655543
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.39 E-value=0.00049 Score=55.83 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+++|||||||..|+-+|.++.|.+ .-+|+++.+.+.
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~G-A~~V~vi~rr~~ 80 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCG-ARRVFLVFRKGF 80 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTT-CSEEEEECSSCG
T ss_pred CCCEEEEECCChhHHHHHHHHHHcC-CcceeEEEeCCh
Confidence 4678999999999999999999998 235888877653
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.27 E-value=0.0001 Score=68.68 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+|||||+|+||+.+|.+|++.| .+|+|+|++.
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAG--VQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCc--CeEEEEecCC
Confidence 37999999999999999999998 9999999974
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.24 E-value=2.2e-05 Score=68.54 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=28.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCC----ceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQE----AQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~----~~v~lie~~~ 54 (415)
++|+|||||.+|+++|.+|+++|+. .+++++++..
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~ 39 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF 39 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence 5899999999999999999999932 1466666554
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.21 E-value=0.00011 Score=68.70 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=33.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
....+|||||+|++|+.+|.+|++.| .+|+|+|++.
T Consensus 5 ~~~~dvIVVGsG~aG~v~A~rLaeaG--~~VlvLEaG~ 40 (370)
T d3coxa1 5 GDRVPALVIGSGYGGAVAALRLTQAG--IPTQIVEMGR 40 (370)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 35689999999999999999999998 9999999863
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.10 E-value=0.00017 Score=67.21 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.||+||||+|+||.-+|.+|++.+ .+|+|+|++.
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g--~~VlvLEaG~ 35 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAG--KKVLLLERGG 35 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSC
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCC--CeEEEEEccC
Confidence 4689999999999999999999998 9999999884
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.00 E-value=0.0065 Score=53.07 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=31.0
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
-+|+|||+|++|+-+|..|.+ .|..+|+++.|++..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~--------------------~Gi~~V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQ--------------------AGIGKVTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHh--------------------CCCCeEEEEeCCCCC
Confidence 479999999999999999986 576789999998643
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.00039 Score=51.33 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|+|+|.|-+|+++|..|.+.| .+|+++|....
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g--~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT--CCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCC--CEEEEeeCCcC
Confidence 5678999999999999999999999 99999997653
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0053 Score=47.65 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=48.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
+.++|+|||||.+.+..|..|.+.. -+|+++-|.+.+- ..+...+.+.+..+..++.+..++.+
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a--~~V~li~r~~~~~------------~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR------------AEKILIKRLMDKVENGNIILHTNRTL 89 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--SEEEEECSSSSCC------------CCHHHHHHHHHHHHTSSEEEECSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcC--CcEEEEeeccccc------------chhHHHHHHHHhhcccceeEecceEE
Confidence 6789999999999999999999998 8999998776421 11234556666666677888777655
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.82 E-value=0.00046 Score=56.93 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||+|..|.++|.+|.+.| ++|+|+||+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g--~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSG--IKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTT--CEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCh
Confidence 478999999999999999999999 9999999874
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=96.76 E-value=0.00045 Score=65.11 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.+|+||||||+||..+|.+|++.+ +.+|+|+|++..
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~-~~~VLlLEaG~~ 59 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENP-KIKVLVIEKGFY 59 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTST-TCCEEEEESSCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCC-CCeEEEEcCCCC
Confidence 4699999999999999999999875 579999999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.75 E-value=0.00076 Score=55.95 Aligned_cols=34 Identities=21% Similarity=0.049 Sum_probs=31.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||+|..|+++|..|++.| ++|+++++.+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G--~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CEEEEEECCH
Confidence 478999999999999999999999 9999999653
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=96.65 E-value=0.00054 Score=64.33 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.+|+||||+|+||..+|.+|.+.+ +.+|+|+|+++.
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~-~~~VLvLEaG~~ 52 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENP-NISVLVIESGSY 52 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTST-TCCEEEEESSCC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCC-CCeEEEECCCCC
Confidence 5689999999999999999999864 489999998854
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=96.64 E-value=0.0029 Score=56.65 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=27.6
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
+|+|||+|.+|+-+|..|++ .|.++|+|+.|+.
T Consensus 3 dViIIGaGi~G~s~A~~La~--------------------~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVT--------------------RGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHH--------------------TTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------cCCCcEEEEeCCC
Confidence 59999999999999999986 3555788887763
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=96.47 E-value=0.00061 Score=63.13 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..+|+||||+|+||..+|.+|++. .+|+|+|+++.
T Consensus 25 ~~YD~IIVGsG~aG~vlA~rLae~---~kVLvLEaG~~ 59 (351)
T d1ju2a1 25 GSYDYVIVGGGTSGCPLAATLSEK---YKVLVLERGSL 59 (351)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTTT---SCEEEECSSBC
T ss_pred CCccEEEECccHHHHHHHHHhcCC---CCEEEEecCCC
Confidence 468999999999999999999863 89999998864
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.013 Score=53.06 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHhc
Q 014990 161 TAVILGQGNVALDVARILLR 180 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~ 180 (415)
.|+|||+|..|+-+|..+.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~ 28 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQ 28 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 59999999999999999986
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.41 E-value=0.0023 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
+.+|+|||+|++|+.+|..|.+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~ 23 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLK 23 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHHH
Confidence 4689999999999999999986
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0021 Score=52.24 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|+|+|||+|.-|...|..|++.| ++|++++|.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G--~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQG--HEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CceEEEEcCHH
Confidence 68999999999999999999999 99999998765
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.27 E-value=0.00035 Score=63.19 Aligned_cols=111 Identities=12% Similarity=0.050 Sum_probs=61.2
Q ss_pred eeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCc
Q 014990 281 RELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGI 360 (415)
Q Consensus 281 ~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~ 360 (415)
.++.+++++.+++|. . +++.+ .+.+.. .+++.++++||.||+|++... +..+.+......
T Consensus 248 ~g~~i~~~~~V~~I~--~-~~~~v-~v~~~~--------------~~~~~~~~~aD~VI~A~p~~~--l~~i~~~p~l~~ 307 (370)
T d2iida1 248 IQDKVHFNAQVIKIQ--Q-NDQKV-TVVYET--------------LSKETPSVTADYVIVCTTSRA--VRLIKFNPPLLP 307 (370)
T ss_dssp TGGGEESSCEEEEEE--E-CSSCE-EEEEEC--------------SSSCCCEEEESEEEECSCHHH--HTTSEEESCCCH
T ss_pred cCCccccCceEEEEE--E-eCCeE-EEEEEe--------------cCCCeEEEEeeEEEecCCHHH--HhhCccCCCCCH
Confidence 356667777777775 3 23322 222221 145556899999999997432 112222111100
Q ss_pred c--------ccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 361 V--------PNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 361 ~--------~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
. ............ ..+...+||++||.+..+.+.+..|+..|..||.+|+.
T Consensus 308 ~~~~ai~~~~~~~~~~~~~~~--~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~ 366 (370)
T d2iida1 308 KKAHALRSVFTPYQFQHFSDP--LTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNL 366 (370)
T ss_dssp HHHHHHHHCCCTTHHHHHHHH--HHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccccccchh--hhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHHh
Confidence 0 000001111111 22345679999998766666666799999999999874
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=96.26 E-value=0.008 Score=46.60 Aligned_cols=82 Identities=13% Similarity=0.167 Sum_probs=55.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+.++|+|||||.+.+..|..|.+.. -+|+|+-+.+.+- . .+. ...++.+..+++++.++.+..
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a--~~V~li~r~~~~~------~------~~~---~~~~~~~~~~I~v~~~~~v~~ 91 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIV--EHVTLLEFAPEMK------A------DQV---LQDKLRSLKNVDIILNAQTTE 91 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTB--SEEEEECSSSSCC------S------CHH---HHHHHHTCTTEEEESSEEEEE
T ss_pred CCceEEEEeCCHHHHHHHHhhhccC--CceEEEecccccc------c------ccc---cccccccccceeEEcCcceEE
Confidence 5789999999999999999999987 8999998776431 1 111 122233445788888876521
Q ss_pred ---------EEEecc---c---ccccCEEEEccC
Q 014990 98 ---------SVSLSE---L---RQLYHVVVLAYG 116 (415)
Q Consensus 98 ---------~v~~~~---~---~~~~d~lvlAtG 116 (415)
.+...+ . ....|.|+++.|
T Consensus 92 i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 92 VKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp EEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred EEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 122221 1 135788888887
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.23 E-value=0.0048 Score=54.72 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+|+|||+|++|+-+|..|.+ .|. +|+++.|++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~--------------------~G~-~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHK--------------------AGI-DNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------HTC-CEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 69999999999999999996 454 8999988753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.17 E-value=0.003 Score=49.48 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=29.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
|+|+|+|+|.-|...|..|.+.| ++|+++|+.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g--~~v~vid~d 32 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDID 32 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCcceecCC
Confidence 68999999999999999999999 999999953
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.14 E-value=0.0037 Score=47.53 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
-+.++|+|||||..|..-|..|.+.| .+|+++++.
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~ 44 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALT 44 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESS
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecc
Confidence 36789999999999999999999999 999999743
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0095 Score=51.17 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHhc
Q 014990 161 TAVILGQGNVALDVARILLR 180 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~ 180 (415)
.|+|||+|+.|+|+|...++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR 23 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQ 23 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHH
T ss_pred cEEEECcCHHHHHHHHHHHH
Confidence 59999999999999999997
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.002 Score=51.70 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=32.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
-+.++|+|||||..|+.-|..|.+.| .+|+||.+.
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~G--A~VtVvap~ 45 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTG--CKLTLVSPD 45 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGT--CEEEEEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 47899999999999999999999999 999999754
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.04 E-value=0.011 Score=51.08 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..++|+|||+|++|+-+|..|.+ .|. +|+++.|++.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~--------------------~G~-~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRD--------------------AGV-DVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHH--------------------CCC-CEEEEeCCCC
Confidence 57899999999999999999986 454 8999998743
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.99 E-value=0.0045 Score=50.34 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++-+|+|||+|.+|+.|+..+.+.| .+|+++|.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~ 64 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDIN 64 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESC
T ss_pred CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCc
Confidence 5789999999999999999999999 999999954
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.79 E-value=0.0065 Score=50.07 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++-+|+|||+|.+|+.||..+.+.| ..|+++|.+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~ 63 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAA 63 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCST
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHH
Confidence 4668999999999999999999999 99999997653
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.73 E-value=0.037 Score=50.17 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=25.5
Q ss_pred CcccCCeeeeeccccCCc-cchhhhhhhHHHHHhhcc
Q 014990 377 SQVENGLYVCGWLKRGPT-GIIATNLYCAEETVSSLS 412 (415)
Q Consensus 377 ~t~~p~vfaiGD~~~~~~-~~~~~a~~~g~~~a~~i~ 412 (415)
.++.|++|++||+.+... .++..+...|+++++.+.
T Consensus 282 ~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~ 318 (356)
T d1jnra2 282 MTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAV 318 (356)
T ss_dssp BCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhcCCccccCccccccccchhHHHHH
Confidence 467899999999875332 334456777888887664
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.69 E-value=0.0045 Score=52.29 Aligned_cols=34 Identities=24% Similarity=0.201 Sum_probs=31.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|+|.|||.|+-|+.+|..|++.| ++|+.+|....
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g--~~V~g~D~n~~ 34 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARG--HEVIGVDVSST 34 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred CEEEEECCCHhHHHHHHHHHhCC--CcEEEEeCCHH
Confidence 68999999999999999999999 99999998753
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.52 E-value=0.0057 Score=47.74 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=29.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
|+++|||+|..|..+|..|.+.| ++|+++|+.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--~~vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--HEVLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEecCc
Confidence 57999999999999999999999 999999954
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.49 E-value=0.009 Score=47.59 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+++++|.|||+|.-|.++|..|+..+-..+++|+|...
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 46789999999999999999999987435899999543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=95.48 E-value=0.019 Score=50.28 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=19.9
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
.-.|+|||+|.+|+-+|.+|++
T Consensus 3 ~yDvvIIGaGi~Gls~A~~La~ 24 (281)
T d2gf3a1 3 HFDVIVVGAGSMGMAAGYQLAK 24 (281)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHH
Confidence 3469999999999999999997
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.44 E-value=0.00073 Score=59.81 Aligned_cols=106 Identities=14% Similarity=0.096 Sum_probs=60.3
Q ss_pred eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCcc--CCCCc--ccCC
Q 014990 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP--VNGLP--FDNH 357 (415)
Q Consensus 282 ~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~--~~~~~--~~~~ 357 (415)
|+++++++.+++|. . +++.+ .++..+ .++.++++||.||+|+|..... +..++ +...
T Consensus 233 g~~i~~~~~V~~I~--~-~~~~~-~v~~~~---------------~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~ 293 (347)
T d2ivda1 233 GDAAHVGARVEGLA--R-EDGGW-RLIIEE---------------HGRRAELSVAQVVLAAPAHATAKLLRPLDDALAAL 293 (347)
T ss_dssp GGGEESSEEEEEEE--C-C--CC-EEEEEE---------------TTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHH
T ss_pred hcccccCCEEEEEE--E-eCCeE-EEEEEc---------------CCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHH
Confidence 56778888888886 3 23333 233322 4556689999999999853211 11110 0000
Q ss_pred CCccccCCCce----eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 358 KGIVPNIRGRV----LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 358 ~g~~~~~~G~i----~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
.+ .....|.. .++. ..+.+|++|++||...+. ++. .|+++|..+|++|.
T Consensus 294 ~~-~~~~~~~~~~~~~~~~---~~~~~p~~~~~G~~~~g~-~~~-~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 294 VA-GIYNLGHLERVAAIDA---ALQRLPGLHLIGNAYKGV-GLN-DCIRNAAQLADALV 346 (347)
T ss_dssp HH-TCCBTTHHHHHHHHHH---HHHTSTTEEECSTTTSCC-SHH-HHHHHHHHHHHHHC
T ss_pred hh-cceecCcccceecccc---cccCCCCEEEecccccCC-CHH-HHHHHHHHHHHHhh
Confidence 00 00011111 1122 346899999999987543 444 58999999999885
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.42 E-value=0.01 Score=47.33 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=34.7
Q ss_pred cCCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 14 ALSSNPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 14 ~~~~~~~~VvIIG-gG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++..++|.||| .|.-|.+.|..|.+.| ++|.++|+..
T Consensus 4 ~~~~~~~kI~iIGg~G~mG~~la~~L~~~G--~~V~~~d~~~ 43 (152)
T d2pv7a2 4 TINSDIHKIVIVGGYGKLGGLFARYLRASG--YPISILDRED 43 (152)
T ss_dssp CSCTTCCCEEEETTTSHHHHHHHHHHHTTT--CCEEEECTTC
T ss_pred ccCCCCCeEEEEcCCCHHHHHHHHHHHHcC--CCcEeccccc
Confidence 3456788999999 6999999999999999 9999999864
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.01 Score=49.64 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|.|||+|.-|..-|..+++.| ++|+++|+.+.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~~ 38 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATG--HTVVLVDQTED 38 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCC--CcEEEEECChH
Confidence 68999999999999999999999 99999998753
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.04 E-value=0.018 Score=46.26 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=32.1
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..+++++|.|||+|.-|.++|..|...+ -.+++|+|..+
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~-~~el~L~D~~~ 41 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRE-LADVVLYDVVK 41 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHT-CCEEEEECSSS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCC-CceEEEEEecc
Confidence 3567899999999999999999888776 24899998544
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.91 E-value=0.015 Score=46.99 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=30.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|.|||.|.-|.+.|..|.+.| ++|+++|+.+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g--~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRG--HYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCC--CEEEEEECCc
Confidence 57999999999999999999999 9999999753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.87 E-value=0.0086 Score=51.19 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=28.9
Q ss_pred CCcccCCeeeeeccccC-CccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRG-PTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~-~~~~~~~a~~~g~~~a~~i~~ 413 (415)
..++.++||++||++.. .++.+..|+.+|..+|+.|..
T Consensus 302 ~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~ 340 (347)
T d1b5qa1 302 LRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340 (347)
T ss_dssp HHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred cccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence 35678999999998742 234555689999999998764
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.84 E-value=0.049 Score=50.36 Aligned_cols=34 Identities=15% Similarity=-0.015 Sum_probs=26.0
Q ss_pred cccCCeeeeeccccC-----CccchhhhhhhHHHHHhhcc
Q 014990 378 QVENGLYVCGWLKRG-----PTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 378 t~~p~vfaiGD~~~~-----~~~~~~~a~~~g~~~a~~i~ 412 (415)
...||+..+||+++- ..++. .||..|+.||+.|.
T Consensus 242 l~~~G~lLVGDAAG~vnP~~g~GI~-~Am~SG~lAAeai~ 280 (380)
T d2gmha1 242 LTFPGGLLIGCSPGFMNVPKIKGTH-TAMKSGTLAAESIF 280 (380)
T ss_dssp CEETTEEECTTTTCCCBTTTTBCHH-HHHHHHHHHHHHHH
T ss_pred cccCCeeEEeccccccchhhcCCee-eeeccHHHHHHHHH
Confidence 467999999999842 13544 78999999998775
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.82 E-value=0.011 Score=49.14 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
=++|.|||+|..|..-|..+++.| ++|+++|+.+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G--~~V~l~D~~~ 37 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKG--TPILMKDINE 37 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEECCH
Confidence 467999999999999999999999 9999999864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.034 Score=44.15 Aligned_cols=79 Identities=13% Similarity=-0.012 Sum_probs=49.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
+-+|+|+|.|.-|..++..|.+.+ .+++++|..+. . ...........++.++.+-.....
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~--~~v~vId~d~~-----------------~-~~~~~~~~~~~~~~vi~Gd~~d~~ 62 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRG--QNVTVISNLPE-----------------D-DIKQLEQRLGDNADVIPGDSNDSS 62 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCH-----------------H-HHHHHHHHHCTTCEEEESCTTSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEeccch-----------------h-HHHHHHHhhcCCcEEEEccCcchH
Confidence 447999999999999999999999 99999984331 1 111222233346666554332111
Q ss_pred EEecccccccCEEEEccCC
Q 014990 99 VSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 99 v~~~~~~~~~d~lvlAtG~ 117 (415)
+-.+-+...+|.+|++|+.
T Consensus 63 ~L~~a~i~~a~~vi~~~~~ 81 (153)
T d1id1a_ 63 VLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp HHHHHTTTTCSEEEECSSC
T ss_pred HHHHhccccCCEEEEcccc
Confidence 1001122368889999875
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.55 E-value=0.018 Score=51.98 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
.|+|+|||+|.+|+-+|..|++ .| .+|+|+.++..+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k--------------------~G-~~V~viEk~~~i 37 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAE--------------------KG-HQVHIIDQRDHI 37 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--------------------TT-CEEEEEESSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHh--------------------CC-CCEEEEECCCCC
Confidence 5899999999999999999996 33 588888887543
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.50 E-value=0.018 Score=47.37 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=29.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
|+|.|||+|.-|.+.|..|++.+ .+|+++.+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g--~~V~l~~r 31 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNG--NEVRIWGT 31 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHC--CEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEEe
Confidence 68999999999999999999999 99999865
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.49 E-value=0.029 Score=44.53 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
....+|.|||+|.-|.++|..|...+-..+++|+|..+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 46778999999999999999999988334799999543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.47 E-value=0.015 Score=48.48 Aligned_cols=35 Identities=23% Similarity=0.083 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|||+|.-|.+.|..|++.+ .+|+|+.+.+
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g--~~V~l~~r~~ 40 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKC--REVCVWHMNE 40 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTE--EEEEEECSCH
T ss_pred eeceEEEECCCHHHHHHHHHHHHcC--CeEEEEEecH
Confidence 4567999999999999999999998 9999998653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.29 E-value=0.022 Score=48.75 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..++|+|||+|.+|+-+|..|++ .|. +|+|+.|..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~--------------------~G~-~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILAR--------------------KGY-SVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHH--------------------CCC-CEEEEeCCC
Confidence 56899999999999999999997 344 899999864
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.18 E-value=0.03 Score=43.43 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=46.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
+.++|+|||||.+.+..|..|++.. -+|+||-|.+.+.. . +. ...++.+..+++++.++.+
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a--~~V~li~r~~~~ra--------~----~~---~~~~l~~~~nI~v~~~~~v 93 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDAFRA--------S----KI---MQQRALSNPKIDVIWNSSV 93 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS--SEEEEECSSSSCCS--------C----HH---HHHHHHTCTTEEEECSEEE
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCC--CcEEEEEecccccc--------c----hh---hhhccccCCceEEEeccEE
Confidence 6899999999999999999999998 89999987775311 1 11 2233445667888888766
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.05 E-value=0.023 Score=48.57 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
.+++|+|||+|++|+.+|..|.+ .| -+|+++.++..+
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~--------------------~G-~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLME--------------------SG-YTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSSST
T ss_pred CCceEEEEcccHHHHHHHHHHHH--------------------hc-cceeeEeecccc
Confidence 68999999999999999999996 34 489999988654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.03 E-value=0.024 Score=47.14 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|+|+|||.|+.|+.+|..++ +| ++|+.+|-++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g--~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQ--NEVTIVDILPS 33 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TT--SEEEEECSCHH
T ss_pred CEEEEECCChhHHHHHHHHH-CC--CcEEEEECCHH
Confidence 68999999999999998776 57 99999998754
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.049 Score=40.90 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=35.0
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..+..++|.|+|||.=|...|....+.| +++.++|+.+.
T Consensus 7 ~~~~~~kigIlGgGQL~rMla~aA~~lG--~~v~v~d~~~~ 45 (111)
T d1kjqa2 7 LRPAATRVMLLGSGELGKEVAIECQRLG--VEVIAVDRYAD 45 (111)
T ss_dssp TSTTCCEEEEESCSHHHHHHHHHHHTTT--CEEEEEESSTT
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHCC--CEEEEEcCCCC
Confidence 3457789999999999999999999999 99999998765
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.01 E-value=0.036 Score=44.75 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|.|||.|.-|.+.|..|.+.++..+|..+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 57999999999999999999998666888888753
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.045 Score=43.94 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.6
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+....+.+|.|||+|.-|.++|..|...+-..+++|+|..
T Consensus 14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~ 53 (159)
T d2ldxa1 14 EDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD 53 (159)
T ss_dssp CCCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred cccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3344667899999999999999999998844489999854
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.92 E-value=0.037 Score=43.84 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=29.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|.|||+|.-|.++|..|..++-..+++|+|..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 35 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 7899999999999999999988733489999854
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.90 E-value=0.054 Score=41.50 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCC-----------HHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 16 SSNPLRVCVVGSG-----------PAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 16 ~~~~~~VvIIGgG-----------~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
....++|+|||+| +++..++..|++.| +++++++.++.
T Consensus 4 ~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g--~~~iliN~NP~ 52 (127)
T d1a9xa3 4 RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEG--YRVINVNSNPA 52 (127)
T ss_dssp CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHT--CEEEEECSCTT
T ss_pred CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcC--CeEEEecCchH
Confidence 3467899999998 58999999999999 99999998765
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.81 E-value=0.046 Score=42.98 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=30.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|.|||+|.-|.++|..|...+-..+++|+|..+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 57999999999999999999987445899998554
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.044 Score=44.44 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=31.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.+.++|+|+|+|-|+-+++..|.+.+ .+|+|+.|.
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~g--~~i~I~nRt 50 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRT 50 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSS
T ss_pred CCCCEEEEECCcHHHHHHHHHhcccc--eEEEeccch
Confidence 46789999999999999999999998 789999864
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=0.06 Score=40.77 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=32.8
Q ss_pred CCCeEEEECCC-----------HHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSG-----------PAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG-----------~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||+| +++..|+..|++.| +++++++.++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g--~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG--YETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTT--CEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcC--CeEEEEecChh
Confidence 56789999999 68999999999999 99999998875
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=93.53 E-value=0.048 Score=42.88 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=29.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+++|.|||+|.-|.++|..|...+ -.+++++|..+
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~~ 35 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVE 35 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC-cceEEEEeecc
Confidence 368999999999999999999886 24899998543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=93.45 E-value=0.054 Score=42.61 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.+|.|||+|.-|.++|..|..++-..+++|+|...
T Consensus 1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 358999999999999999999988334899999655
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.38 E-value=0.033 Score=41.45 Aligned_cols=35 Identities=14% Similarity=-0.048 Sum_probs=29.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.++|+|||+|.+|+-.|..|++.. -+++++.+.+
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~a--k~v~~~~~r~ 65 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVA--KHPIYQSLLG 65 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhc--CEEEEEEecC
Confidence 6789999999999999999999987 6666666544
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.032 Score=49.39 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=26.9
Q ss_pred CCcccCCeeeeecccc-CCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKR-GPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~-~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
..+..+|||++||... +-.+.+..|+..|..||++|+.
T Consensus 407 ~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~ 445 (449)
T d2dw4a2 407 APQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIAD 445 (449)
T ss_dssp ---CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHH
Confidence 4567899999999753 2223455799999999999864
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.32 E-value=0.042 Score=44.78 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=30.0
Q ss_pred CeEEEE-CCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVV-GSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvII-GgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
|+|.|| |+|.-|.+.|..|++.| ++|++.+|++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G--~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLG--HEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT--CEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC--CEEEEEECCH
Confidence 579999 66999999999999999 9999999864
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=93.07 E-value=0.09 Score=42.13 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=31.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..+++|.|||+|.-|.++|..|...+--.+++|+|..
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 3567999999999999999999999843489999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.18 Score=40.92 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=31.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
+...+|+|+|+|+.|+.++..+...| . +|+++|+++
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~G--a~~Vi~~~~~~ 63 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLG--AENVIVIAGSP 63 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTT--BSEEEEEESCH
T ss_pred CCCCEEEEECCCccchhheecccccc--ccccccccccc
Confidence 45678999999999999999999988 6 789998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.63 E-value=0.087 Score=42.38 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=32.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.....+|+|+|+|+.|+.++..++..| .+|+++|+++
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~ 61 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSS 61 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSS
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccch
Confidence 446778999999999999999888888 9999998654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.58 E-value=0.079 Score=41.58 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|.|||+|.-|.++|..|...+--.+++|+|..
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence 5899999999999999999988733579999854
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=92.57 E-value=0.091 Score=41.25 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.+|.|||+|.-|.++|..|..++--.+++|+|..
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~ 35 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 35 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 5799999999999999999988843489999843
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.075 Score=44.15 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=31.9
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..++|+|+|| |..|.+++..|.+.| ++|+++.|++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g--~~V~~~~R~~ 37 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDS 37 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEEcCh
Confidence 5788999995 999999999999999 9999998864
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.096 Score=42.18 Aligned_cols=35 Identities=31% Similarity=0.311 Sum_probs=30.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
....+|+|+|+|+.|+.++..+...| . +|+++|+.
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G--~~~Vi~~d~~ 60 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLS 60 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESC
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcC--CceEEeccCC
Confidence 35668999999999999999999988 6 78888854
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.34 E-value=0.089 Score=41.12 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=29.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|.|||+|.-|.++|..|..++-..+++|+|..
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~ 34 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 5899999999999999999988744589999844
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.30 E-value=0.1 Score=41.83 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.....+|+|+|+|+.|+.++..++..| .+|+++|+.+
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~ 60 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSP 60 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHH
Confidence 345678999999999999999998888 8999998653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.052 Score=48.25 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=26.8
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.|+|||||.+|+-+|..|++ .| .+|+++.++.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~--------------------~g-~~V~iiEk~~ 34 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKK--------------------LN-KKVLVIEKRN 34 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGG--------------------GT-CCEEEECSSS
T ss_pred cEEEECCcHHHHHHHHHHHh--------------------CC-CcEEEEECCC
Confidence 58999999999999999986 23 5788887764
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=92.22 E-value=0.069 Score=42.75 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=30.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|-|||-|.-|...|..|++.| ++|+++|+.+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G--~~V~~~d~~~ 33 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAG--YSLVVSDRNP 33 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCC--CeEEEEeCCc
Confidence 57999999999999999999999 9999999753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.22 E-value=0.11 Score=41.56 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
....+|+|+|+|+.|+.++..++..| .+|+++|+.+
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~ 61 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDD 61 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCH
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcC--Cccceecchh
Confidence 45678999999999999999888888 8999998653
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=92.09 E-value=0.069 Score=46.85 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=32.7
Q ss_pred CCCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+++++|+|+|| |+.|.+.+.+|.++| ++|+++.|...
T Consensus 1 ~~k~KILVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~ 38 (312)
T d1qyda_ 1 DKKSRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEV 38 (312)
T ss_dssp CCCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEECCCc
Confidence 36778999997 999999999999999 99999987653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=92.06 E-value=0.075 Score=42.90 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=30.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
+.++|+|+|+|-++-+++..|.+.+ . +|+|+.|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g--~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSG--FEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTT--CCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--CCEEEEeccc
Confidence 5688999999999999999999998 5 78888764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.03 E-value=0.068 Score=42.21 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
.+|+|+|||||..|.+-+..|.+ .| .+|+++...
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~--------------------~G-A~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMP--------------------TG-CKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGG--------------------GT-CEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CC-CEEEEEeCC
Confidence 79999999999999999999996 45 489998754
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.86 E-value=0.094 Score=41.28 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=28.7
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|.|||+ |.-|.++|..|...+--.+++|+|..
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~ 35 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE 35 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence 57999996 99999999999988733489999854
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.84 E-value=0.087 Score=42.29 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.|+|+|||+|.+|.-+|..|.+ .+. +|+++.|+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~--------------------~g~-~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTD--------------------SGI-KVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT--------------------TTC-EEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--------------------CCC-EEEEEECCh
Confidence 6899999999999999999997 454 799999984
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.70 E-value=0.096 Score=41.37 Aligned_cols=33 Identities=21% Similarity=0.092 Sum_probs=29.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|.|||.|..|.+.|..|++.| ++|+++++.+
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g--~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRG--VEVVTSLEGR 33 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTT--CEEEECCTTC
T ss_pred CEEEEEcHHHHHHHHHHHHHHCC--CeEEEEcCch
Confidence 57999999999999999999999 9998887543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.11 Score=36.21 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|+|.|+|||.=|-..+....+.| +++.++|+.+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG--~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLG--IAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGT--EEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC--CEEEEEcCCCC
Confidence 68999999999999999999999 99999998754
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.61 E-value=0.073 Score=44.55 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..=.|+|||+|.+|+-+|..|++ .| .+|+++.++..+
T Consensus 4 ~~yDviViGaG~~Gl~~A~~La~--------------------~G-~~V~vlE~~~~~ 40 (297)
T d2bcgg1 4 TDYDVIVLGTGITECILSGLLSV--------------------DG-KKVLHIDKQDHY 40 (297)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--------------------CC-CCEEEEcCCCCC
Confidence 34569999999999999999997 45 689999998644
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.58 E-value=0.057 Score=41.48 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEE-EcCCCCCCCccccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDI-IDRLPTPFGLVRSG 63 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~l-ie~~~~~gg~~~~~ 63 (415)
++++|+|+|+|.+|.+.+.++.... +++++- ||..+..-|....|
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~-~~~iv~fiDdd~~k~G~~I~G 47 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRG 47 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcC-CcEEEEEEeCchHhcCCEECC
Confidence 5679999999999999988775443 477665 57766554444434
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=91.57 E-value=0.096 Score=42.52 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=31.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.+|-|||-|..|...|..|.+.| ++|.++|+.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G--~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHG--FVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCC--CeEEEEcCCH
Confidence 457999999999999999999999 9999999875
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=91.50 E-value=0.34 Score=35.89 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=37.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEE
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHI 237 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (415)
.+|+|+|||+|.+|..-+..|.+ .++ +|+++.... .+++..+...+.+....
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~--------------------~ga-~v~v~~~~~-------~~~~~~~~~~~~i~~~~ 62 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLE--------------------AGA-RLTVNALTF-------IPQFTVWANEGMLTLVE 62 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH--------------------TTB-EEEEEESSC-------CHHHHHHHTTTSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEeccC-------ChHHHHHHhcCCceeec
Confidence 68999999999999999999986 454 788876542 24555555555444444
Q ss_pred c
Q 014990 238 R 238 (415)
Q Consensus 238 ~ 238 (415)
+
T Consensus 63 ~ 63 (113)
T d1pjqa1 63 G 63 (113)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.36 E-value=0.09 Score=45.66 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=32.7
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+++|+|+|| |+-|-+++..|.+.| ++|++++|.+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G--~~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG--HPTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CeEEEEECCCc
Confidence 4788999998 999999999999999 99999998754
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.17 E-value=0.11 Score=41.57 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|-|||-|.-|...|.+|.+.| ++|.++|+..
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g--~~v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAG--YLLNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTT--CEEEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCC--CeEEEEECch
Confidence 57999999999999999999999 9999999753
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=90.92 E-value=0.12 Score=41.90 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=31.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
....++|+|+|+|-++-+++..|.+.+ .+|+|+.|.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~--~~i~I~nR~ 50 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRT 50 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESS
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccC--ceeeeccch
Confidence 347789999999999999999999876 799999865
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=90.82 E-value=0.17 Score=40.41 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...++|+|||+|-.|-.++.+|...+ . +++++.|.
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g--~~~i~v~nRt 57 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRG--VRAVLVANRT 57 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHC--CSEEEEECSS
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcC--CcEEEEEcCc
Confidence 47889999999999999999999998 6 68888754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.69 E-value=0.18 Score=40.38 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=31.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.+...+|+|+|+|+.|+.++..++..| .++++++..
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~ 63 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTS 63 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS
T ss_pred CCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccc
Confidence 456788999999999999998888888 898888854
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=90.64 E-value=0.13 Score=41.72 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|-|||-|.-|...|.+|.+.| ++|.++|+..
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G--~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKG--FKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCC--CeEEEEECCH
Confidence 67999999999999999999999 9999999753
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.48 E-value=0.22 Score=39.29 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=28.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+.+|.|||+|.-|.++|..|...+ -.+++|+|..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~-l~el~L~Di~ 36 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIV 36 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEecc
Confidence 468999999999999998887776 3489999853
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=90.16 E-value=0.22 Score=40.56 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=31.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...++|+|+|+|-+|-+++..|.+.+ .-+++|++|..
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~ 52 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRD 52 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcC-CceEeeeccch
Confidence 46789999999999999999999998 24788998753
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.16 Score=36.44 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+|+|+|+|.|-||.-+|..|.+ .+ .+|+++..+.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~--------------------~g-~~v~~~D~~~ 38 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLA--------------------RG-VTPRVMDTRM 38 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH--------------------TT-CCCEEEESSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHH--------------------CC-CEEEEeeCCc
Confidence 78999999999999999999986 34 4788887764
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.61 E-value=0.17 Score=39.58 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred eEEEECC-CHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 21 RVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 21 ~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
+|+|||| |.-|.++|..|...+--.+++|+|.
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi 34 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI 34 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEec
Confidence 6999996 9999999999998873357999984
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=89.36 E-value=0.15 Score=40.76 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+++|+|||+|.+|..++..|.. .+.++++++.|+.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~--------------------~g~~~i~v~nRt~ 58 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVD--------------------RGVRAVLVANRTY 58 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHH--------------------HCCSEEEEECSSH
T ss_pred ccCeEEEECCCHHHHHHHHHHHh--------------------cCCcEEEEEcCcH
Confidence 68999999999999999999986 5778999999874
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.13 Score=45.64 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=27.5
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.|+|||+|.+|+-+|..|++ .| .+|+++.++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~--------------------~G-~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHD--------------------SG-LNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHH--------------------TT-CCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEecCC
Confidence 48999999999999999997 45 4899998764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.16 E-value=0.16 Score=40.92 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=29.0
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
|+|+|||+|..|.-+|..|.+ .| .+|+++.|++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~--------------------~G-~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL--------------------KG-QSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHH--------------------CC-CEEEEEECCH
Confidence 789999999999999999996 34 5899998874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=89.03 E-value=0.23 Score=40.04 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
.....+|+|+|+|+.|+.++..++..| . +|+++|+.+
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~G--a~~Vi~~d~~~ 62 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRG--AGRIIGVGSRP 62 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT--CSCEEEECCCH
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhccc--ccccccccchh
Confidence 345678999999999999999999887 5 688888653
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=88.97 E-value=0.32 Score=41.46 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+..+|+|||+|--|-.+|..|++.| --+++|+|..
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D 63 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAG-VGNLTLLDFD 63 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECCC
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEECCc
Confidence 4678999999999999999999999 3489999966
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.87 E-value=0.24 Score=39.34 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=30.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.....+|+|+|+|+.|+.++..+...+ .+|++++.+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~ 60 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIG 60 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSC
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCC
Confidence 446778999999999999988888888 889888754
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=88.74 E-value=0.2 Score=43.59 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=30.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
....|+|||+|++|+.+|..|++ ....+|+++.+++.+
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~--------------------~~G~~V~vlE~~~~~ 69 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISK--------------------NPNVQVAIIEQSVSP 69 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHT--------------------STTSCEEEEESSSSC
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--------------------ccCCeEEEEecCCCC
Confidence 35679999999999999999974 223589999988643
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=88.63 E-value=0.28 Score=40.13 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=32.3
Q ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIG-gG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
-..++|+|.| +|-.|..+|..|++.| .+|++++|+.
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G--~~V~~~~r~~ 57 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEG--AEVVLCGRKL 57 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhc--cchhhcccch
Confidence 3789999999 5899999999999999 9999998764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=88.61 E-value=0.33 Score=39.13 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=30.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
.+...+|+|+|+|+-|+.++..+...| . .|++.|..+
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~G--a~~Vi~~d~~~ 63 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDING 63 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCG
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhC--Cceeeeeccch
Confidence 446678999999999999999999998 6 566667443
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=88.55 E-value=0.17 Score=43.58 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=30.9
Q ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+|+|+|+|| |+.|-.++..|..+| ++|+.+++..
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g--~~Vi~~~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKN--VEVIPTDVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS--EEEEEECTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC--CEEEEeechh
Confidence 478999998 999999999999999 9999998764
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=88.51 E-value=0.2 Score=40.19 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+++|+|+|+|-+|--++..|.+ .+.++++++.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~--------------------~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKN--------------------SGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHH--------------------TTCCCEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CCCCEEEEecccH
Confidence 67899999999999999999986 6888999998874
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.42 E-value=0.2 Score=41.91 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=28.7
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
-.|+|||+|+.|+.+|..+++ .| .+|.++.++..
T Consensus 6 yDviVIG~GpAGl~aA~~aa~--------------------~G-~kV~lie~~~~ 39 (233)
T d1v59a1 6 HDVVIIGGGPAGYVAAIKAAQ--------------------LG-FNTACVEKRGK 39 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEESSSS
T ss_pred cCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEEecCC
Confidence 469999999999999999996 34 58999987654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.33 E-value=0.33 Score=37.90 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=26.2
Q ss_pred CeEEEEC-CCHHHHHHHHHHHHc-CCCceEEEEcC
Q 014990 20 LRVCVVG-SGPAGFYTAEKTLKA-HQEAQVDIIDR 52 (415)
Q Consensus 20 ~~VvIIG-gG~AGl~aA~~L~~~-g~~~~v~lie~ 52 (415)
++|.||| +|.-|.++|..|... +-..++.|+|.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~ 35 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI 35 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecc
Confidence 5899999 599999999988654 32368999983
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.24 E-value=0.44 Score=37.07 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=35.0
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcC-CCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGS-GPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGg-G~AGl~aA~~L~~~g-~~~~v~lie~~~~~gg~~~ 61 (415)
++++|.|||| |+.|......|.+++ |..++..+-.....|....
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~ 46 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG 46 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee
Confidence 4689999998 999999999998654 7789988876666655443
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=87.97 E-value=0.22 Score=41.82 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=29.2
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
=.|+|||+|+.|+.+|..+.+ .+ .+|+++.+...+
T Consensus 7 yDviIIG~GPaGlsaA~~aa~--------------------~G-~~V~viE~~~~~ 41 (229)
T d1ojta1 7 YDVVVLGGGPGGYSAAFAAAD--------------------EG-LKVAIVERYKTL 41 (229)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEESSSCS
T ss_pred cCEEEECcCHHHHHHHHHHHH--------------------CC-CeEEEEeccCCC
Confidence 469999999999999999996 34 589999887543
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.92 E-value=0.31 Score=46.03 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=40.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
.|..++|||+|-|..=--.|..|.+.| .+|.=+|++++-||.+.
T Consensus 3 lP~e~DVII~GTGL~ESILAaAlSr~G--kkVLHiD~N~yYGg~~a 46 (491)
T d1vg0a1 3 LPSDFDVIVIGTGLPESIIAAACSRSG--QRVLHVDSRSYYGGNWA 46 (491)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred CCCccCEEEECCChHHHHHHHHHHhcC--CEEEEecCCCcCCCccc
Confidence 468899999999999999999999999 99999999999888654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.83 E-value=0.34 Score=43.57 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIG-gG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+|+|+| .|+-|-.++..|.++| ++|+++|+...
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g--~~V~~~d~~~~ 50 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEG--HYVIASDWKKN 50 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEeCCCc
Confidence 4788999999 6899999999999999 99999987643
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=87.81 E-value=0.33 Score=38.03 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=28.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|.+||+|.-|.+.|..|.+.+ ..+|.++|++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~ 33 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRG 33 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSS
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCC
Confidence 58999999999999999998886 3688887754
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.79 E-value=0.24 Score=39.05 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=29.0
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|..|.-+|..|++ .| .+|+++.|+..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~--------------------~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK--------------------QG-HEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHH--------------------CC-CceEEEEcCHH
Confidence 479999999999999999996 34 58999999853
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.68 E-value=0.39 Score=38.39 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+...+|+|+|+|+.|+.++..++..+ ...|+.+|+.+
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~ 63 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNP 63 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchH
Confidence 445677999999999999999999888 34677777553
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.55 E-value=0.39 Score=39.46 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=29.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
.+...+|+|+|+|+.|+.++..+...+ ..+|+++|.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~ 58 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDL 58 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEES
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecc
Confidence 456779999999999999999888777 237777773
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.47 E-value=0.42 Score=38.50 Aligned_cols=38 Identities=18% Similarity=0.081 Sum_probs=31.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+....|+|+|+|+-|+.+...+...| ..+|+.+|..+
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~ 64 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNK 64 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcH
Confidence 446778999999999999999999988 24788998654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=87.44 E-value=0.18 Score=43.34 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.|+|||+|.+|+-+|.+|++ .| .+|+++.+..
T Consensus 6 DvvIIGaGi~Gls~A~~La~--------------------~G-~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAK--------------------EN-KNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CC-CcEEEEeCCC
Confidence 59999999999999999997 45 5899998864
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.44 E-value=0.3 Score=38.39 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=28.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|.|||+|--|.+.|..|.+.+ .++++.++.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~--~~i~v~~r~ 32 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTP--HELIISGSS 32 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSS--CEEEEECSS
T ss_pred CEEEEEeccHHHHHHHHHHHhCC--CeEEEEcCh
Confidence 57999999999999999999988 899888754
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=87.42 E-value=0.28 Score=39.35 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=22.9
Q ss_pred CCCeEEEECCCHHHHHHHH-HHHHcCCC---ceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAE-KTLKAHQE---AQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~-~L~~~g~~---~~v~lie~~ 53 (415)
+..+|+|||||..|...+. .+.+.-++ .+++|+|-.
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did 41 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDND 41 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSC
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCC
Confidence 5678999999987765432 22322222 378999843
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=87.06 E-value=0.4 Score=37.28 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=27.3
Q ss_pred eEEEEC-CCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 21 RVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 21 ~VvIIG-gG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
+|.||| +|.-|.++|..|..++-..++.|+|.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence 799999 69999999999999884447888883
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.34 Score=38.60 Aligned_cols=35 Identities=23% Similarity=0.040 Sum_probs=32.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
-..|+|+|||-|.-|-.+|..|+..| .+|+++|..
T Consensus 22 l~Gk~v~V~GyG~iG~g~A~~~rg~G--~~V~v~e~d 56 (163)
T d1li4a1 22 IAGKVAVVAGYGDVGKGCAQALRGFG--ARVIITEID 56 (163)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSC
T ss_pred ecCCEEEEeccccccHHHHHHHHhCC--CeeEeeecc
Confidence 46889999999999999999999999 999999943
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=86.99 E-value=0.36 Score=43.18 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|+|+|| |+-|-+++..|.++| ++|+++-|+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G--~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG--HHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT--CCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC--CeEEEEECCc
Confidence 6889999996 999999999999999 9999997753
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=86.44 E-value=0.34 Score=37.90 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
...++|+|||+|.+|..+|..|.. +--..++.++.+.
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~-------------------~~~~~elvL~D~~ 39 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQ-------------------QGIAEEFVIVDVV 39 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHH-------------------HTCCSEEEEECSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh-------------------cCCCcEEEEeecc
Confidence 357899999999999999999885 1224688888765
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=86.40 E-value=0.39 Score=38.89 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+|+|+|+|+|.+|--++..|.+ .+.++++++.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~--------------------~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAI--------------------EGLKEIKLFNRRD 52 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TTCSEEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHhh--------------------cCCceEeeeccch
Confidence 68999999999999988888886 6889999999985
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.21 E-value=0.37 Score=38.85 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+.++|+|+|+|-++-+++..|.+. .+|+|+.|.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~---~~i~I~nR~ 49 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKD---NNIIIANRT 49 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSS---SEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHccc---cceeeehhh
Confidence 678999999999999999998664 388888764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.02 E-value=0.5 Score=37.95 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=30.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.....+|+|+|+|+.|+.++..+...| ..+|+++|..
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~ 61 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTH 61 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCCh
Confidence 446678999999999999999999998 2367777754
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=85.94 E-value=0.45 Score=42.37 Aligned_cols=36 Identities=22% Similarity=0.102 Sum_probs=32.2
Q ss_pred CCCeEEEEC-CCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIG-gG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.|+|+|.| .|+-|..++..|.+.| ++|..+++...
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g--~~V~~~~r~~~ 43 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMG--ATVKGYSLTAP 43 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCC
Confidence 569999999 6799999999999999 99999998643
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=85.57 E-value=0.42 Score=39.68 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.|+|+|||+|.+|+-+|..|.+.+ .+++++-+...
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~--~~~~~~~~~~~ 66 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQA--AELFVFQRTPH 66 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHB--SEEEEEESSCC
T ss_pred CCCEEEEECCCccHHHHHHHHHhhh--ccccccccccc
Confidence 6899999999999999999999998 88888766543
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.26 E-value=0.25 Score=43.66 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
.++.|+|||+|++|+.+|..|.+ +....+|+++.++..+
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~-------------------~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAK-------------------NRPDLKVCIIESSVAP 87 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHH-------------------HCTTSCEEEECSSSSC
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-------------------hCCCCeEEEEEcCCCC
Confidence 46789999999999999999985 1233589999887544
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=85.06 E-value=0.71 Score=37.35 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=33.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
-..++|.|||.|..|-..|..+...| .+|..+|+..
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g--~~v~~~d~~~ 75 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALG--AQVRGFSRTP 75 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTT--CEEEEECSSC
T ss_pred ccCceEEEeccccccccceeeeeccc--cccccccccc
Confidence 46889999999999999999999999 9999999764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=85.01 E-value=0.71 Score=36.81 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=30.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+....|+|+|+|..|++++..++..+ ..+|++++.++
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~ 63 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINK 63 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcH
Confidence 446678999999999999999999988 34777777554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.82 E-value=0.55 Score=37.55 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=28.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceE-EEEcC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQV-DIIDR 52 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v-~lie~ 52 (415)
.+...+|+|+|+|+.|+.++..+...+ .++ ++.|.
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g--~~~v~~~~~ 61 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCG--ASIIIAVDI 61 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT--CSEEEEEES
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccc--cceeeeecc
Confidence 446778999999999999999998888 554 45553
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.64 E-value=0.37 Score=39.83 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.6
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
.|+|||+|+.|+++|..+++ .| ++|.++.+.
T Consensus 5 DviIIG~GpaG~~aA~~aar--------------------~G-~kV~vIEk~ 35 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAE--------------------LG-ARAAVVESH 35 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------TT-CCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CC-CEEEEEecc
Confidence 48999999999999999996 44 589999765
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=84.46 E-value=0.83 Score=37.62 Aligned_cols=34 Identities=32% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
-+.++|+|.|.|-.|..+|..|.+.| .+|++.|.
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~G--akvvv~d~ 58 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAG--AQLLVADT 58 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEecc
Confidence 47889999999999999999999999 99998874
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=84.43 E-value=0.31 Score=40.28 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.6
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
.|+|||+|+.|+.+|..+++ .+ .+|.++.+.
T Consensus 5 DviIIGgGpAGl~aA~~aar--------------------~G-~~V~viE~~ 35 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQ--------------------LG-LKTALIEKY 35 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHH--------------------HT-CCEEEEECC
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------CC-CeEEEEecc
Confidence 59999999999999999997 34 589999875
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=84.38 E-value=0.45 Score=38.02 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+|+|+|+|+|-+|--++..|.+ .+. +++++.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~--------------------~g~-~i~I~nRt~ 51 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLS--------------------LDC-AVTITNRTV 51 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--------------------TTC-EEEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHhcc--------------------cce-EEEeccchH
Confidence 68999999999999999999886 565 599998874
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=83.66 E-value=0.75 Score=40.87 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=31.6
Q ss_pred CCCeEEEEC-CCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVG-SGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIG-gG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.|+|+|.| .|+.|-..+..|.+.+.+..|+.+|+.+.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~ 39 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY 39 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCc
Confidence 468999999 69999999999999995567777876543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.65 E-value=0.9 Score=36.06 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=28.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.....|+|+|+|+.|+.++..++..+ ...|+++|+.
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~ 66 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVK 66 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESS
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhc-Ccccccccch
Confidence 45678999999999999999988887 2356666754
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.37 E-value=0.49 Score=39.46 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.5
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
=.|+|||+|+.|+.+|..+++ .| .+|.++.+..
T Consensus 4 YDviVIG~GpaGl~aA~~aa~--------------------~G-~kV~viE~~~ 36 (235)
T d1h6va1 4 FDLIIIGGGSGGLAAAKEAAK--------------------FD-KKVMVLDFVT 36 (235)
T ss_dssp EEEEEECCSHHHHHHHHHHGG--------------------GC-CCEEEECCCC
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeccC
Confidence 359999999999999999997 33 5899998654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.33 E-value=0.75 Score=32.98 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=32.3
Q ss_pred CCCCCCeEEEECCCHHHHHH-HHHHHHcCCCceEEEEcCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYT-AEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~a-A~~L~~~g~~~~v~lie~~ 53 (415)
.....++|-+||-|=+|+++ |..|..+| ++|+-.|..
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G--~~VsGSD~~ 41 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEG--YQISGSDIA 41 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHT--CEEEEEESC
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 34578899999999999999 99999999 999988854
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.28 E-value=0.51 Score=38.64 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=28.5
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
|+|+|||+|..|..+|..++. .| -+|+++.+++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~--------------------~G-~~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA--------------------TG-HTVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--------------------TT-CEEEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHHh--------------------CC-CcEEEEECCh
Confidence 799999999999999998885 34 5899998875
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=83.17 E-value=0.65 Score=36.51 Aligned_cols=25 Identities=8% Similarity=0.236 Sum_probs=21.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHhc
Q 014990 156 LKSTDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 156 ~~~~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
+.+.++|+|||+|.+|..+|..|..
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~ 28 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCAL 28 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHH
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHh
Confidence 3467899999999999988877764
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=82.71 E-value=0.43 Score=41.73 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=37.5
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
+.++.+++++.+++++ .++++.+.++...+. .+....+.++.||+|||-
T Consensus 157 ~~gv~i~~~~~v~~li--~~~~G~V~Gv~~~~~--------------~~~~~~i~Ak~VVlAtGG 205 (308)
T d1y0pa2 157 KRNIDLRMNTRGIEVL--KDDKGTVKGILVKGM--------------YKGYYWVKADAVILATGG 205 (308)
T ss_dssp HTTCEEESSEEEEEEE--ECTTSCEEEEEEEET--------------TTEEEEEECSEEEECCCC
T ss_pred hccceEEEeeccchhh--hhccccccccccccc--------------ccceeEeecCeEEEccCc
Confidence 5689999999988876 424678888877652 344558999999999994
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=82.56 E-value=0.48 Score=37.97 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+|+|+|+|+|.++--++..|.+ +..+++++.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~---------------------~~~~i~I~nR~~ 51 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQ---------------------AQQNIVLANRTF 51 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHH---------------------TTCEEEEEESSH
T ss_pred CCCEEEEECCcHHHHHHHHHHcc---------------------cCceeeeccchH
Confidence 78999999999999888888875 457899999984
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.55 E-value=0.36 Score=38.07 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.7
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcC
Q 014990 18 NPLRVCVVGS-GPAGFYTAEKTLKAH 42 (415)
Q Consensus 18 ~~~~VvIIGg-G~AGl~aA~~L~~~g 42 (415)
++++|+|||| |..|.++|..|+...
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~ 27 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGS 27 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHH
Confidence 5679999995 999999999998654
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.36 E-value=0.71 Score=40.53 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=29.5
Q ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+|+|+|.|| |+.|-..+..|.++| ++|+.+|+.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g--~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG--HEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc--CEEEEEeCC
Confidence 578999996 799999999999999 999999863
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=82.08 E-value=0.71 Score=36.54 Aligned_cols=35 Identities=23% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
-..++++|+|=|.-|-.+|.+|+..| .+|++.|..
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg~G--a~V~V~E~D 55 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKGLG--ARVYITEID 55 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSC
T ss_pred ecCCEEEEecccccchhHHHHHHhCC--CEEEEEecC
Confidence 36889999999999999999999999 999999843
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.02 E-value=1.9 Score=39.71 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..+|+|||+|--|-.+|..|++.| -.+++|+|...
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~G-vg~i~lvD~D~ 71 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSG-FRQIHVIDMDT 71 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTT-CCCEEEECCCB
T ss_pred cCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEECCC
Confidence 568999999999999999999999 23899999763
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.82 E-value=1.1 Score=35.79 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=20.9
Q ss_pred CCeEEEECCCHHHHHHHH--HHHHcC--CCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAE--KTLKAH--QEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~--~L~~~g--~~~~v~lie~~ 53 (415)
+++|+|||||..|...+. .+.... +..+++|+|..
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~ 39 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIP 39 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCG
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCC
Confidence 468999999966654332 233221 11488888843
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=81.55 E-value=0.48 Score=40.28 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
..++|+|||.|..|.++|..|++ .|.++++++...
T Consensus 29 ~~~~VliiG~GglGs~va~~La~--------------------~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLAS--------------------AGVGNLTLLDFD 63 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHH--------------------HTCSEEEEECCC
T ss_pred hCCCEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEECCc
Confidence 46899999999999999999996 799999999765
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.47 E-value=1.7 Score=36.56 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCCeEEEECCC-HHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSG-PAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG-~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..|.++|.||+ --|.+.|..|++.| ++|++.++....
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~G--a~V~~~~r~~~~ 43 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADG--HKVAVTHRGSGA 43 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEECCcch
Confidence 67889999987 58999999999999 999999987653
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.30 E-value=1.1 Score=37.02 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=29.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHH--------------------HcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTL--------------------KAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~--------------------~~g~~~~v~lie~~~ 54 (415)
...++|+|||+|..++=||..|+ +.+ .-+|+++-|..
T Consensus 37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~-~~~V~iv~RRg 93 (216)
T d1lqta1 37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRG-IQEVVIVGRRG 93 (216)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCC-CCEEEEECSSC
T ss_pred ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcC-CceEEEEEECC
Confidence 35789999999999999998887 343 34799998764
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.20 E-value=0.81 Score=37.45 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=28.1
Q ss_pred CCCeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++++|+|+|| |+.|-+++..|.+.+...+|+.+-|.
T Consensus 1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~ 37 (212)
T d2a35a1 1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK 37 (212)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence 3589999999 99999999999999822255555544
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=81.06 E-value=0.47 Score=38.62 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=28.0
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++|+|||+|..|..+|..++. .| .+|+++.+++
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~--------------------~G-~~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSAS--------------------KG-TPILMKDINE 37 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHH--------------------TT-CCEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEECCH
Confidence 789999999999999988875 34 5899998874
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=81.01 E-value=0.57 Score=41.26 Aligned_cols=93 Identities=19% Similarity=0.274 Sum_probs=59.8
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCcc----------C
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP----------V 349 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~----------~ 349 (415)
+.++++++++.+++++ .++++++.++...+. .++...+.++.||+|||-...+ .
T Consensus 164 ~~gv~i~~~t~v~~li--~d~~G~V~Gv~~~~~--------------~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~ 227 (322)
T d1d4ca2 164 KRGTDIRLNSRVVRIL--EDASGKVTGVLVKGE--------------YTGYYVIKADAVVIAAGGFAKNNERVSKYDPKL 227 (322)
T ss_dssp HTTCEEETTEEEEEEE--CCSSSCCCEEEEEET--------------TTEEEEEECSEEEECCCCCTTCHHHHHHHCGGG
T ss_pred hcCceEEEeeeccccc--ccccccccceEEEee--------------cccEEEEeCCeEEEcCCCcccCHHHHHhhCccc
Confidence 5689999999998887 424678888876542 2344579999999999933211 0
Q ss_pred CCC-----cc------------------cCCCCccccCCCceeeccCCCCCcccCCeeeeecccc
Q 014990 350 NGL-----PF------------------DNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (415)
Q Consensus 350 ~~~-----~~------------------~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~ 391 (415)
..+ |. .+..++.++..+.+..+. ..+.+|||||+|+++.
T Consensus 228 ~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~~~---~~~~v~Glya~Ge~~~ 289 (322)
T d1d4ca2 228 KGFKATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVKSEK---TGKPITGLYAAGEVTG 289 (322)
T ss_dssp TTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEEBTT---TSSEEEEEEECGGGBC
T ss_pred ccccccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEEECC---CCCEeCceEEchhhcC
Confidence 000 00 011233445455555544 5688999999999974
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.90 E-value=0.93 Score=39.55 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=30.7
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|+|+|.|| |+.|-.++..|.++| ++|+.+++...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g--~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG--YRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCCC
Confidence 58999997 899999999999999 99999998754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=80.64 E-value=1 Score=36.07 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 156 ~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++++++|+|+|+|.+|.-++..+.. .|+++|+++.+++
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~--------------------~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARS--------------------LGAENVIVIAGSP 63 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHH--------------------TTBSEEEEEESCH
T ss_pred CCCCCEEEEECCCccchhheecccc--------------------ccccccccccccc
Confidence 4478999999999999766655543 5777888888764
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=80.12 E-value=0.56 Score=35.42 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=24.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|+|+|.|..|..++..|. + ..|+++|..
T Consensus 1 kHivI~G~g~~g~~l~~~L~--~--~~i~vi~~d 30 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR--G--SEVFVLAED 30 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC--G--GGEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHc--C--CCCEEEEcc
Confidence 57999999999999999985 3 567788744
|