Citrus Sinensis ID: 014994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----
Protein Sequence
MLRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFPPKKFLDCDWSDAYLLENGTPEEQNRKRARFMELKEVQKAFYKDMAEKIVQVCRHPRRRHLLQRKE
Secondary Structure (PSIPRED)
ccEEEEEEcccEEEEEEEEHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccEEHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHccccHHHHHHHccc
Coil and Loop (DISEMBL)
MLRLLLRANQWRLIAAYCLSAVKFFRRLLNlrndgsvsegkpkylltdlvpcdgkfgfEAFNDILHYIYtgklkapppevsacvddacvhvscpssVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRiagsnldnfclerelpdevSSEIKSLRVKsnqeseaniaevdpMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDsaglnlkdargrTVLHVAARRNEPEVMVTLLSkgarasettsdgQTAVAICRRMTRRKDYIEASKqgqetnkdrLCIDVLEREMrrnsmsrfppkkfldcdwsdayllengtpeeqNRKRARFMELKEVQKAFYKDMAEKIVQVCRhprrrhllqrke
Flexible Loop (DISEMBL)
MLRLLLRANQWRLIAAYCLSAVKFFRRLLNLRndgsvsegkpkyLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLrvksnqeseaniaevdpmHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAglnlkdargRTVLhvaarrnepevMVTLLskgarasettsdgqtavAICRRMTRRKDYieaskqgqetnkdrlciDVLERemrrnsmsrfppkkfldcDWSDAYLlengtpeeqnrKRARFMELKEVQKAFYKDMAEKIVQVcrhprrrhllqrke
Low Complexity Region (SEG)
MLRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAlhsddvellkllldvsnvtlddayalhyaaaccSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFPPKKFLDCDWSDAYLLENGTPEEQNRKRARFMELKEVQKAFYKDMAEKIVQVCRHPRRRHLLQRKE
Disordered region (IsUnstruct)
**RLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLER*****************************PMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR****VMVTL*****************VAICRRM********************LCIDVL**************KKFLDCDWSDAYLLE**************MELKEVQKAFYKDMAEKIVQVCR************
Disordered Region (DISOPRED)
*LRL***ANQWRLIAAYCLSAVKFFRR********************DLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFPPKKFLDCDWSDAY***********RKRARFMELKEVQKAFYKDMAEKIV****************
Disordered Region (DISEMBL)
MLRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG************AVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFPPKKFLDCDWSDAYLLENGTPEEQNRKRARFMELKEVQKAFYKDMAEKIVQVCRHPRRRHLLQRKE
Disordered Region (DISPRO)
MLRLLLRANQWRLIAAYCLSAVKFFRRLLNLRND***SEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFPPKKFLDCDWSDAYLLENGTPEEQNRKRARFMELKEVQKAFYKDMAEKIVQVCRHPR*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFPPKKFLDCDWSDAYLLENGTPEEQNRKRARFMELKEVQKAFYKDMAEKIVQVCRHPRRRHLLQRKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	415	2.2.26 [Sep-21-2011]
Q5ICL9	574	Regulatory protein NPR4 O	yes	no	0.718	0.519	0.521	4e-81
Q8L746	586	Regulatory protein NPR3 O	no	no	0.773	0.547	0.481	3e-78
Q9SZI3	600	Regulatory protein NPR2 O	no	no	0.691	0.478	0.397	1e-54
P93002	593	Regulatory protein NPR1 O	no	no	0.708	0.495	0.378	1e-51
Q9M1I7	467	Regulatory protein NPR6 O	no	no	0.783	0.695	0.290	2e-30
Q9ZVC2	491	Regulatory protein NPR5 O	no	no	0.780	0.659	0.285	3e-30
Q01484	3957	Ankyrin-2 OS=Homo sapiens	yes	no	0.245	0.025	0.364	4e-06
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.245	0.026	0.364	5e-06
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.267	0.059	0.327	7e-06
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.267	0.059	0.327	8e-06

>sp|Q5ICL9|NPR4_ARATH Regulatory protein NPR4 OS=Arabidopsis thaliana GN=NPR4 PE=1 SV=1

 Score =  302 bits (773), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/305 (52%), Positives = 205/305 (67%), Gaps = 7/305 (2%)

Query: 42  PKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVI 101
           PKY + DL+P  G  G EAF   L YIYTG+LK  P EVS CVD  C H SC  ++++ +
Sbjct: 96  PKYQMKDLLPY-GNVGREAFLHFLSYIYTGRLKPFPIEVSTCVDSVCAHDSCKPAIDFAV 154

Query: 102 ELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGS 161
           ELMYAS   Q+ D V   Q  L   V K+LVE+VLPIL+ AFHC L  L   CI+R+A S
Sbjct: 155 ELMYASFVFQIPDLVSSFQRKLRNYVEKSLVENVLPILLVAFHCDLTQLLDQCIERVARS 214

Query: 162 NLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELL 221
           +LD FC+E+ELP EV  +IK LRVKS      NI EV+    +   ++ KAL SDDVEL+
Sbjct: 215 DLDRFCIEKELPLEVLEKIKQLRVKS-----VNIPEVEDKSIERTGKVLKALDSDDVELV 269

Query: 222 KLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEP 281
           KLLL  S++TLD A  LHYA A   PKV  +VL++D A +N +++RG TVLH+AA R EP
Sbjct: 270 KLLLTESDITLDQANGLHYAVAYSDPKVVTQVLDLDMADVNFRNSRGYTVLHIAAMRREP 329

Query: 282 EVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREM 341
            +++ L+ KGA AS+ T DG++AV ICRR+TR KDY       +E +K RLCID+LERE+
Sbjct: 330 TIIIPLIQKGANASDFTFDGRSAVNICRRLTRPKDY-HTKTSRKEPSKYRLCIDILEREI 388

Query: 342 RRNSM 346
           RRN +
Sbjct: 389 RRNPL 393

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Involved in the regulation of basal defense responses against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L746|NPR3_ARATH Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1

 Score =  292 bits (747), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 156/324 (48%), Positives = 216/324 (66%), Gaps = 3/324 (0%)

Query: 23  KFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSA 82
           KFF+ L       S +E KPKY L +++P  G    EAF   L YIYTG+LK  P EVS 
Sbjct: 83  KFFQDLFKKEKKISKTE-KPKYQLREMLPY-GAVAHEAFLYFLSYIYTGRLKPFPLEVST 140

Query: 83  CVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAA 142
           CVD  C H  C  ++++V++LMYAS+ LQ+ + V   Q  L   V K LVE+VLPIL+ A
Sbjct: 141 CVDPVCSHDCCRPAIDFVVQLMYASSVLQVPELVSSFQRRLCNFVEKTLVENVLPILMVA 200

Query: 143 FHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMH 202
           F+C+L  L   CI+R+A S+L  FC+E+E+P EV+ +IK LR+ S Q+ E +    + + 
Sbjct: 201 FNCKLTQLLDQCIERVARSDLYRFCIEKEVPPEVAEKIKQLRLISPQDEETSPKISEKLL 260

Query: 203 AKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLN 262
            +I  +I KAL SDDVEL+KLLL  S++TLD A  LHY+     PKV  E+L +D   +N
Sbjct: 261 ERI-GKILKALDSDDVELVKLLLTESDITLDQANGLHYSVVYSDPKVVAEILALDMGDVN 319

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK 322
            +++RG TVLH AA R EP ++++L+ KGA ASE TSDG++AV I RR+T  KDY   + 
Sbjct: 320 YRNSRGYTVLHFAAMRREPSIIISLIDKGANASEFTSDGRSAVNILRRLTNPKDYHTKTA 379

Query: 323 QGQETNKDRLCIDVLEREMRRNSM 346
           +G+E++K RLCID+LERE+R+N M
Sbjct: 380 KGRESSKARLCIDILEREIRKNPM 403

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Involved in the regulation of basal defense responses against pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZI3|NPR2_ARATH Regulatory protein NPR2 OS=Arabidopsis thaliana GN=NPR2 PE=3 SV=1

 Score =  214 bits (545), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 184/297 (61%), Gaps = 10/297 (3%)

Query: 53  DGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQM 112
           D + GF++   +L Y+Y+G++++PP   SACVDD C HV+C S V++++E++Y S   Q+
Sbjct: 119 DYEVGFDSVVAVLAYVYSGRVRSPPKGASACVDDDCCHVACRSKVDFMVEVLYLSFVFQI 178

Query: 113 KDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNM--LRSYCIQRIAGSNLDNFCLER 170
           ++ V L +   L +V K +VED+L I      C      L   CI+ I  S+++   LE+
Sbjct: 179 QELVTLYERQFLEIVDKVVVEDILVIFKLDTLCGTTYKKLLDRCIEIIVKSDIELVSLEK 238

Query: 171 ELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNV 230
            LP  +  +I  +R       EA   E  P   + V+ I+KAL SDDVEL+K+LL   + 
Sbjct: 239 SLPQHIFKQIIDIR-------EALCLE-PPKLERHVKNIYKALDSDDVELVKMLLLEGHT 290

Query: 231 TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK 290
            LD+AYALH+A A C+ K   ++L ++ A +NL++ RG TVLHVAA R EP+++++LL K
Sbjct: 291 NLDEAYALHFAIAHCAVKTAYDLLELELADVNLRNPRGYTVLHVAAMRKEPKLIISLLMK 350

Query: 291 GARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMS 347
           GA   +TT DG+TA+ I +R+T+  DY  +++ G  + K  LCI+VLE E +   +S
Sbjct: 351 GANILDTTLDGRTALVIVKRLTKADDYKTSTEDGTPSLKGGLCIEVLEHEQKLEYLS 407

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P93002|NPR1_ARATH Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/304 (37%), Positives = 181/304 (59%), Gaps = 10/304 (3%)

Query: 53  DGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQM 112
           D + GF++   +L Y+Y+ +++ PP  VS C D+ C HV+C  +V++++E++Y +   ++
Sbjct: 120 DYEVGFDSVVTVLAYVYSSRVRPPPKGVSECADENCCHVACRPAVDFMLEVLYLAFIFKI 179

Query: 113 KDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLR--SYCIQRIAGSNLDNFCLER 170
            + + L Q  LL +V K ++ED L IL  A  C    ++    C + I  SN+D   LE+
Sbjct: 180 PELITLYQRHLLDVVDKVVIEDTLVILKLANICGKACMKLLDRCKEIIVKSNVDMVSLEK 239

Query: 171 ELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNV 230
            LP+E+  EI   R +   E         P   K V  +HKAL SDD+EL+KLLL   + 
Sbjct: 240 SLPEELVKEIIDRRKELGLEV--------PKVKKHVSNVHKALDSDDIELVKLLLKEDHT 291

Query: 231 TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK 290
            LDDA ALH+A A C+ K   ++L +D A +N ++ RG TVLHVAA R EP+++++LL K
Sbjct: 292 NLDDACALHFAVAYCNVKTATDLLKLDLADVNHRNPRGYTVLHVAAMRKEPQLILSLLEK 351

Query: 291 GARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFP 350
           GA ASE T +G+TA+ I ++ T   +     +Q + + K RLC+++LE+E +R  + R  
Sbjct: 352 GASASEATLEGRTALMIAKQATMAVECNNIPEQCKHSLKGRLCVEILEQEDKREQIPRDV 411

Query: 351 PKKF 354
           P  F
Sbjct: 412 PPSF 415

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Key positive regulator of the SA-dependent signaling pathway that negatively regulates JA-dependent signaling pathway. Mediates the binding of TGA factors to the as-1 motif found in the pathogenesis-related PR-1 gene, leading to the transcriptional regulation of the gene defense. Controls the onset of systemic acquired resistance (SAR). Upon SAR induction, a biphasic change in cellular reduction potential occurs, resulting in reduction of the cytoplasmic oligomeric form to a monomeric form that accumulates in the nucleus and activates gene expression. Phosphorylated form is target of proteasome degradation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I7|NPR6_ARATH Regulatory protein NPR6 OS=Arabidopsis thaliana GN=NPR6 PE=1 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 184/355 (51%), Gaps = 30/355 (8%)

Query: 10  QWRLIAAY-CLSAVK--FFRRLLNLRNDGSVSEGKPK---------YLLTDLVPCDGKFG 57
           + RL+ A+ C+ A +  FFR+     +D S    +P            +  ++P +   G
Sbjct: 34  EGRLVHAHRCILAARSLFFRKFF-CESDPSQPGAEPANQTGSGARAAAVGGVIPVN-SVG 91

Query: 58  FEAFNDILHYIYTGKLKAPPPEV---SACVDDACVHVSCPSSVNYVIELMYASAALQMKD 114
           +E F  +L ++Y+G++   P +    S C D  C H  C ++V+  ++++ A+    ++ 
Sbjct: 92  YEVFLLLLQFLYSGQVSIVPHKHEPRSNCGDRGCWHTHCTAAVDLSLDILAAARYFGVEQ 151

Query: 115 RVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPD 174
              L Q  L  MV KA +EDV+ +L+A+    ++ L + C   IA S L    L + LP 
Sbjct: 152 LALLTQKHLTSMVEKASIEDVMKVLIASRKQDMHQLWTTCSYLIAKSGLPQEILAKHLPI 211

Query: 175 EVSSEIKSLRVKSNQESEA------NIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS 228
           E+ ++I+ LR+KS+    +      ++     +  + +RR+ +AL S DVEL+KL++   
Sbjct: 212 ELVAKIEELRLKSSMPLRSLMPHHHDLTSTLDLEDQKIRRMRRALDSSDVELVKLMVMGE 271

Query: 229 NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDA-RGRTVLHVAARRNEPEVMVTL 287
            + LD++ AL YA   CS +V K +L + +A +N      G+T LH+AA    P+++  L
Sbjct: 272 GLNLDESLALIYAVENCSREVVKALLELGAADVNYPAGPTGKTALHIAAEMVSPDMVAVL 331

Query: 288 LSKGARASETTSDGQTAVAICRRMTRRKDYI-EASKQGQ---ETNKDRLCIDVLE 338
           L   A  +  T DG T + I R +T   D++ + +  G    E NK RLC+++++
Sbjct: 332 LDHHADPNVQTVDGITPLDILRTLT--SDFLFKGAIPGLTHIEPNKLRLCLELVQ 384

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts redundantly with BOP2. BOP1/2 promote leaf and floral meristem fate and determinacy in a pathway targeting AP1 and AGL24. BOP1/2 act as transcriptional co-regulators through direct interaction with TGA factors, including PAN, a direct regulator of AP1. Controls lateral organ fate through positive regulation of adaxial-abaxial polarity genes ATHB-14/PHB, YAB1/FIL and YAB3, and through positive regulation of LOB domain-containing genes LOB, LBD6/AS2 and LBD36. Promotes and maintains a developmentally determinate state in leaf cells through the negative regulation of JAG, JGL and class I KNOX genes. Is also involved in nectary development, formation of normal abscission zones and suppression of bract formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVC2|NPR5_ARATH Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 185/364 (50%), Gaps = 40/364 (10%)

Query: 10  QWRLIAAY-CLSAVK--FFRRL------------LNLRNDGSV--SEGKPKYLLTDLVPC 52
           + RL+ A+ C+ A +  FFR+             ++    GSV  S  +       ++P 
Sbjct: 33  EGRLVHAHRCILAARSLFFRKFFCGTDSPQPVTGIDPTQHGSVPASPTRGSTAPAGIIPV 92

Query: 53  DGKFGFEAFNDILHYIYTGKLKAPPPEVSA---CVDDACVHVSCPSSVNYVIELMYASAA 109
           +   G+E F  +L ++Y+G++   P +      C +  C H  C ++V+  ++ + AS  
Sbjct: 93  N-SVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSAAVDLALDTLAASRY 151

Query: 110 LQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLE 169
             ++    L Q  L  MV KA +EDV+ +L+A+    ++ L + C   +A S L    L 
Sbjct: 152 FGVEQLALLTQKQLASMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEILA 211

Query: 170 RELPDEVSSEIKSLRVKS----------NQESEANIAEVDPMHAKIVRRIHKALHSDDVE 219
           + LP +V ++I+ LR+KS          N   + ++A+   +  + +RR+ +AL S DVE
Sbjct: 212 KHLPIDVVTKIEELRLKSSIARRSLMPHNHHHDLSVAQ--DLEDQKIRRMRRALDSSDVE 269

Query: 220 LLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDA-RGRTVLHVAARR 278
           L+KL++    + LD++ ALHYA   CS +V K +L + +A +N      G+T LH+AA  
Sbjct: 270 LVKLMVMGEGLNLDESLALHYAVESCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEM 329

Query: 279 NEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYI-EASKQGQ---ETNKDRLCI 334
             P+++  LL   A  +  T  G T + I R +T   D++ + +  G    E NK RLC+
Sbjct: 330 VSPDMVAVLLDHHADPNVRTVGGITPLDILRTLT--SDFLFKGAVPGLTHIEPNKLRLCL 387

Query: 335 DVLE 338
           ++++
Sbjct: 388 ELVQ 391

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts redundantly with BOP2. BOP1/2 promote leaf and floral meristem fate and determinacy in a pathway targeting AP1 and AGL24. BOP1/2 act as transcriptional co-regulators through direct interaction with TGA factors, including PAN, a direct regulator of AP1. Controls lateral organ fate through positive regulation of adaxial-abaxial polarity genes ATHB-14/PHB, YAB1/FIL and YAB3, and through positive regulation of LOB domain-containing genes LOB, LBD6/AS2 and LBD36. Promotes and maintains a developmentally determinate state in leaf cells through the negative regulation of JAG, JGL and class I KNOX genes. Is also involved in nectary development, formation of normal abscission zones and suppression of bract formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 209 IHKALHSDDVELLKLLLD----VSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H A   D VE +K LL     V +VTLD   ALH AA C   +V K +L+   A  N +
Sbjct: 336 LHMAAQGDHVECVKHLLQHKAPVDDVTLDYLTALHVAAHCGHYRVTKLLLD-KRANPNAR 394

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
              G T LH+A ++N  +VM  L+  GA     T  G T + +   M
Sbjct: 395 ALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFM 441

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 209 IHKALHSDDVELLKLLLD----VSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H A   D VE +K LL     V +VTLD   ALH AA C   +V K +L+   A  N +
Sbjct: 336 LHMAAQGDHVECVKHLLQYKAPVDDVTLDYLTALHVAAHCGHYRVTKLLLD-KRANPNAR 394

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
              G T LH+A ++N  +VM  L+  GA     T  G T + +   M
Sbjct: 395 ALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFM 441

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 52.4 bits (124), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 200 PMHAKI---VRRIHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKE 252
           P+ AK    +  IH A   D ++ ++LLL    ++ ++TLD    LH AA C   +V K 
Sbjct: 297 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKV 356

Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
           +L+   A  N +   G T LH+A ++N   VM  LL  GA     T  G T + +   M
Sbjct: 357 LLD-KGAKPNSRALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFM 414

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 200 PMHAKI---VRRIHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKE 252
           P+ AK    +  IH A   D ++ ++LLL    ++ ++TLD    LH AA C   +V K 
Sbjct: 293 PIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKV 352

Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
           +L+   A  N +   G T LH+A ++N   VM  LL  GA     T  G T + +   M
Sbjct: 353 LLD-KGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFM 410

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
224062625	597	NPR1/NIM1-like regulatory protein [Popul	0.780	0.542	0.622	1e-112
356553915	590	PREDICTED: regulatory protein NPR3-like	0.778	0.547	0.595	1e-106
449525948	585	PREDICTED: regulatory protein NPR3-like	0.780	0.553	0.605	1e-105
449460026	585	PREDICTED: regulatory protein NPR3-like	0.780	0.553	0.602	1e-105
356501441	590	PREDICTED: regulatory protein NPR3-like	0.778	0.547	0.595	1e-104
357494147	594	NPR1-1 protein [Medicago truncatula] gi|	0.787	0.550	0.593	1e-104
224085403	585	NPR1/NIM1-like regulatory protein [Popul	0.780	0.553	0.590	1e-102
224136524	589	NPR1/NIM1-like regulatory protein [Popul	0.780	0.550	0.572	1e-101
185179560	586	NPR1-like protein [Malus x domestica]	0.778	0.551	0.564	1e-101
225348362	586	NPR-1 [Pyrus x bretschneideri]	0.778	0.551	0.570	1e-100

>gi|224062625|ref|XP_002300863.1| NPR1/NIM1-like regulatory protein [Populus trichocarpa] gi|222842589|gb|EEE80136.1| NPR1/NIM1-like regulatory protein [Populus trichocarpa]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/326 (62%), Positives = 255/326 (78%), Gaps = 2/326 (0%)

Query: 23  KFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSA 82
           +FF  L    N+ S +  KP+YL++DLVP  G  G+EAF+  LHY+YTGKLK  PPEVS 
Sbjct: 87  QFFHELFKKGNNNSTNGDKPRYLMSDLVPY-GGVGYEAFHVFLHYLYTGKLKPSPPEVSR 145

Query: 83  CVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAA 142
           CVDDAC H  C  ++NYV+ELM ASA  QMK+ V L Q  LL  + KALVEDV+PIL+AA
Sbjct: 146 CVDDACAHDVCRPAINYVVELMCASATFQMKELVLLFQRRLLNFIEKALVEDVIPILMAA 205

Query: 143 FHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMH 202
           FH QL+ L S+CI+R+  S+LD+ C+++ELPDE+SS+IK LR KS  E+E+++ EVDP+ 
Sbjct: 206 FHYQLDQLLSHCIERLVRSDLDSTCIDKELPDEISSKIKLLRKKSLPEAESSVEEVDPIL 265

Query: 203 AKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLN 262
            K  RRIHKAL SDDVEL++LLL  SN+TLDDAYALHYA A C PK+ KEVL++ SA LN
Sbjct: 266 EKSFRRIHKALDSDDVELVELLLSESNLTLDDAYALHYAVAYCDPKIVKEVLSLGSADLN 325

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK 322
           L+++RG +VLHVAARR EP +++ LL++GA ASETT DGQ AVAICRR+TR KDY E +K
Sbjct: 326 LRNSRGYSVLHVAARRKEPSIIMALLTRGASASETTLDGQNAVAICRRLTRPKDYNENTK 385

Query: 323 QGQETNKDRLCIDVLEREM-RRNSMS 347
           QGQE+NKDR+CIDVLE +M RRNSMS
Sbjct: 386 QGQESNKDRICIDVLETDMRRRNSMS 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553915|ref|XP_003545296.1| PREDICTED: regulatory protein NPR3-like [Glycine max]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/324 (59%), Positives = 246/324 (75%), Gaps = 1/324 (0%)

Query: 24  FFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSAC 83
           FF  L     DGS  EGKP+YL++DL+P  G  G++AF   L+Y+YTG+LKA P E + C
Sbjct: 87  FFHELFKKGTDGSGKEGKPRYLMSDLMPY-GTVGYQAFQVFLYYLYTGRLKASPTEETTC 145

Query: 84  VDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAF 143
           VD+ C+HV+C  ++N+ +ELMYASA  QMK+ V L Q  LL  V KALVEDV+PIL+AAF
Sbjct: 146 VDETCIHVACRPAINHALELMYASATFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAF 205

Query: 144 HCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHA 203
           +CQL+ L S CIQR+A S+ DN  LE+ELP EV +EIKSLR+    ES  N  E + ++ 
Sbjct: 206 NCQLDQLLSRCIQRVARSDFDNTSLEKELPHEVLTEIKSLRLSFQPESTPNAMEAESLNE 265

Query: 204 KIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNL 263
           K +RRIHKAL SDDVELLKLLL+ S+VTLDDAYALHYA A    KV +EVL++  A +  
Sbjct: 266 KSIRRIHKALDSDDVELLKLLLNESSVTLDDAYALHYACAYSDSKVIQEVLSLGMADILR 325

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ 323
           +++RG TVLHVAARR +P ++V LL+KGARAS+TT DGQTA+AIC+R+TR KDY E + Q
Sbjct: 326 RNSRGYTVLHVAARRKDPSILVALLNKGARASDTTPDGQTALAICQRLTRCKDYHEKTVQ 385

Query: 324 GQETNKDRLCIDVLEREMRRNSMS 347
            +E+NKDRLC+DVLEREMRRNSM+
Sbjct: 386 CKESNKDRLCVDVLEREMRRNSMT 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525948|ref|XP_004169978.1| PREDICTED: regulatory protein NPR3-like [Cucumis sativus]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 243/327 (74%), Gaps = 3/327 (0%)

Query: 23  KFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSA 82
           +FF  L     D S  +GKPKY ++ LV    K G EAF  IL+Y+YTGKLK  PPEVS 
Sbjct: 87  QFFHELFKQEVDSSTEDGKPKYCMSKLVAF-RKVGIEAFKVILNYLYTGKLKPSPPEVST 145

Query: 83  CVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAA 142
           CVD+AC H +C  ++NY +ELMYASA  +MK+ V L+Q  LL  V KA VEDV+ +L+AA
Sbjct: 146 CVDEACAHDACGPAINYAVELMYASATFKMKEMVLLVQRRLLNFVEKAAVEDVITLLIAA 205

Query: 143 FHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIA-EVDPM 201
           FHC L+ L + CIQR+A SNLD   L RELPDE++SEIKSLR+KS QE+E +I  E D  
Sbjct: 206 FHCHLDQLHTPCIQRVARSNLDAVSLGRELPDEIASEIKSLRMKSQQETEPDIVEEADLN 265

Query: 202 HAKIVRRIHKALHSDDVELLKLLL-DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG 260
             K +RR+HKAL SDDVELL LLL + S++TL+DAYALHYA A C PKV KEVLN+  A 
Sbjct: 266 REKKIRRLHKALDSDDVELLGLLLRESSDITLNDAYALHYATAYCDPKVIKEVLNLGLAD 325

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEA 320
           LN K+ RG+TVLHVAARR +P ++V LL KGA A E T+DGQTAV ICRR+TR +D+ E 
Sbjct: 326 LNHKNLRGQTVLHVAARRKDPNIIVALLDKGASALEPTADGQTAVTICRRLTRPRDFNET 385

Query: 321 SKQGQETNKDRLCIDVLEREMRRNSMS 347
           +++GQ +NKDRLCIDVLEREMRRNS S
Sbjct: 386 TQKGQVSNKDRLCIDVLEREMRRNSFS 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460026|ref|XP_004147747.1| PREDICTED: regulatory protein NPR3-like [Cucumis sativus]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/327 (60%), Positives = 243/327 (74%), Gaps = 3/327 (0%)

Query: 23  KFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSA 82
           +FF  L     D S  +GKPKY ++ LV    K G EAF  IL+Y+YTGKLK  PPEVS 
Sbjct: 87  QFFHELFKQEVDSSTEDGKPKYCMSKLVAF-RKVGIEAFKVILNYLYTGKLKPSPPEVST 145

Query: 83  CVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAA 142
           CVD+AC H +C  ++NY +ELMYASA  +MK+ V L+Q  LL  V KA VEDV+ +L+AA
Sbjct: 146 CVDEACAHDACGPAINYAVELMYASATFKMKEMVLLVQRRLLNFVEKAAVEDVITLLIAA 205

Query: 143 FHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIA-EVDPM 201
           FHC L+ L + CIQR+A SNLD   L RELPDE++SEIKSLR+KS QE+E +I  E D  
Sbjct: 206 FHCHLDQLHTPCIQRVARSNLDAVSLGRELPDEIASEIKSLRMKSQQETEPDIVEEADLN 265

Query: 202 HAKIVRRIHKALHSDDVELLKLLL-DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG 260
             K +RR+HKAL SDDVELL LLL + S++TL+DAYALHYA A C PK+ KEVLN+  A 
Sbjct: 266 REKKIRRLHKALDSDDVELLGLLLRESSDITLNDAYALHYATAYCDPKIIKEVLNLGLAD 325

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEA 320
           LN K+ RG+TVLHVAARR +P ++V LL KGA A E T+DGQTAV ICRR+TR +D+ E 
Sbjct: 326 LNHKNLRGQTVLHVAARRKDPNIIVALLDKGASALEPTADGQTAVTICRRLTRPRDFNET 385

Query: 321 SKQGQETNKDRLCIDVLEREMRRNSMS 347
           +++GQ +NKDRLCIDVLEREMRRNS S
Sbjct: 386 TQKGQVSNKDRLCIDVLEREMRRNSFS 412

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501441|ref|XP_003519533.1| PREDICTED: regulatory protein NPR3-like [Glycine max]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/324 (59%), Positives = 244/324 (75%), Gaps = 1/324 (0%)

Query: 24  FFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSAC 83
           FF  L     DGS  EGKP+YL++DLVP  G  G+EAF   L+Y+YTG+LKA P EV+ C
Sbjct: 87  FFHELFKKGTDGSGKEGKPRYLMSDLVPY-GTVGYEAFQVFLYYLYTGRLKASPTEVTTC 145

Query: 84  VDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAF 143
           VD+ C H +C  ++NY +ELMYASA  QMK+ V L Q  LL  V KALVEDV+PIL+AAF
Sbjct: 146 VDETCTHDACRPAINYALELMYASATFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAF 205

Query: 144 HCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHA 203
           +CQL+ L S CI+R+A S+ DN  LE+ELP EV +EIK LR+    ES  N  EV+ ++ 
Sbjct: 206 NCQLDQLLSQCIRRVARSDFDNTSLEKELPREVVTEIKLLRLPFQPESTPNAMEVESLNE 265

Query: 204 KIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNL 263
           K +RRIHKAL SDDVELLKLLL+ S+VTLDDA+ALHYA A    KV +EVL++  A +  
Sbjct: 266 KSIRRIHKALDSDDVELLKLLLNESSVTLDDAHALHYACAYSDSKVIQEVLSLGMADILR 325

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ 323
           +++RG TVLHVAARR +P ++V LL+KGA AS+TT DGQTA+AIC+R+TR KDY E + Q
Sbjct: 326 RNSRGYTVLHVAARRKDPSILVALLNKGACASDTTPDGQTALAICQRLTRYKDYQEQTVQ 385

Query: 324 GQETNKDRLCIDVLEREMRRNSMS 347
            +E+NKDRLC+DVLEREMRRNSM+
Sbjct: 386 CKESNKDRLCVDVLEREMRRNSMT 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494147|ref|XP_003617362.1| NPR1-1 protein [Medicago truncatula] gi|355518697|gb|AET00321.1| NPR1-1 protein [Medicago truncatula]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/332 (59%), Positives = 248/332 (74%), Gaps = 5/332 (1%)

Query: 20  SAVKFFRRLLNLRNDGSVSEGK--PKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPP 77
           S  +FF  L     DG V +GK  P+YL+ +LVP  G  G+EAF   LHY+YTGKLKAPP
Sbjct: 87  SRSQFFHELFKKGKDGEVKDGKGKPRYLMKELVPY-GSVGYEAFIVFLHYLYTGKLKAPP 145

Query: 78  PEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLP 137
           PEV+ CVD+AC+H SC  ++N+ +ELMYAS+  QMK+   + Q  LL  V KALVEDV+P
Sbjct: 146 PEVTTCVDEACIHDSCRPAINFALELMYASSTFQMKELALVFQRCLLNYVDKALVEDVIP 205

Query: 138 ILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAE 197
           IL+AA HC+ + L S+CIQR+A S+++   LERELP EV +EIKSLRV+S  ES  +  E
Sbjct: 206 ILMAAHHCKQDQLLSHCIQRVARSDMEIIYLERELPHEVVTEIKSLRVQSLPESTPDSME 265

Query: 198 VDPM--HAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLN 255
           V+P+    K +R+I KAL SDDVELLKLLLD S+VTLDDAYALHYA A C  KV +EVL 
Sbjct: 266 VEPVIVSDKSIRKILKALDSDDVELLKLLLDESSVTLDDAYALHYACAYCDSKVVQEVLT 325

Query: 256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK 315
           +  A + LK+ RG TVLHVAARR +P ++V LL  GA ASETT DGQTA++IC+R+TRRK
Sbjct: 326 LGLADILLKNPRGYTVLHVAARRKDPSILVALLKNGACASETTLDGQTALSICQRLTRRK 385

Query: 316 DYIEASKQGQETNKDRLCIDVLEREMRRNSMS 347
           DY E +  G+E++KDRLC+DVLEREMRR+SMS
Sbjct: 386 DYHEKTATGKESHKDRLCVDVLEREMRRSSMS 417

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085403|ref|XP_002307566.1| NPR1/NIM1-like regulatory protein [Populus trichocarpa] gi|222857015|gb|EEE94562.1| NPR1/NIM1-like regulatory protein [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/325 (59%), Positives = 245/325 (75%), Gaps = 1/325 (0%)

Query: 23  KFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSA 82
           +FF  L    +  S S  KP+YL++DL+P  G  G+EAFN  LHY+YTGK K+ PPEVS 
Sbjct: 87  QFFHELFKKVDSNSTSGDKPRYLMSDLMPY-GGVGYEAFNVFLHYLYTGKHKSSPPEVSQ 145

Query: 83  CVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAA 142
           CV DAC H +C  ++NY +ELMYASA  QMK+ V L Q  LL  + KAL EDV+PI++AA
Sbjct: 146 CVYDACAHDACRPAINYAVELMYASATFQMKELVLLFQRRLLSFIDKALDEDVIPIVMAA 205

Query: 143 FHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMH 202
           FHCQL+ L S CI+R+  S+LD+ C+++ELP E+SS++K LR KS +E+E+++ EVDPM 
Sbjct: 206 FHCQLDQLLSLCIERLVRSDLDSVCIDKELPHEISSKVKLLRKKSLEEAESSVEEVDPMR 265

Query: 203 AKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLN 262
            K + RIHKAL SDDVEL++LLL  SN TLDDAYALHYA + C PKV KEVL +  A LN
Sbjct: 266 EKRMSRIHKALESDDVELVQLLLSESNFTLDDAYALHYAVSYCDPKVVKEVLALGLADLN 325

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK 322
           L+++RG TVLHVAARR E  ++V LL+KGARASE T DG+ AV+I R +TR KDY   +K
Sbjct: 326 LRNSRGYTVLHVAARRKESSILVALLAKGARASEITMDGRNAVSIWRSLTRPKDYNANTK 385

Query: 323 QGQETNKDRLCIDVLEREMRRNSMS 347
           QGQE+NKDR+CI++LE EMRR SMS
Sbjct: 386 QGQESNKDRICIEILETEMRRTSMS 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136524|ref|XP_002322351.1| NPR1/NIM1-like regulatory protein [Populus trichocarpa] gi|222869347|gb|EEF06478.1| NPR1/NIM1-like regulatory protein [Populus trichocarpa]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/325 (57%), Positives = 237/325 (72%), Gaps = 1/325 (0%)

Query: 23  KFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSA 82
           KFF  L       S  EGKPKY ++DL+PC GK G+EAF   L Y+YTGKLK  P EVS 
Sbjct: 87  KFFHELFRREKGSSEKEGKPKYCMSDLLPC-GKVGYEAFLIFLSYLYTGKLKPSPMEVST 145

Query: 83  CVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAA 142
           CVD+ C H +C  ++N+ +ELMYAS+  Q+ + V L Q  L   VGKALVED++PILV A
Sbjct: 146 CVDNVCAHDACRPAINFAVELMYASSIFQVPELVSLFQRRLQNFVGKALVEDMIPILVVA 205

Query: 143 FHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMH 202
           FHCQL+ L + C+ RIA S+LDN  +E+ELP +V+ EIK LR KS  + E N   VD + 
Sbjct: 206 FHCQLSQLVTQCVDRIARSDLDNISIEKELPHDVAVEIKLLRRKSISDEENNTEAVDALR 265

Query: 203 AKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLN 262
            K ++RIH AL SDDVEL+KLLL  S++TLDDA ALHYAA+ C  KV  EVL++  A +N
Sbjct: 266 EKRIKRIHMALDSDDVELVKLLLTESDITLDDANALHYAASYCDLKVVSEVLSLGLADVN 325

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK 322
           L+++RG TVLH+AA R EP V+V++L+KGA A + TSDGQ+AV+ICRR+TR KDY   ++
Sbjct: 326 LRNSRGYTVLHIAAMRKEPSVIVSMLAKGASALDLTSDGQSAVSICRRLTRPKDYHAKTE 385

Query: 323 QGQETNKDRLCIDVLEREMRRNSMS 347
           QGQE NKDRLCID+LEREMRRN M+
Sbjct: 386 QGQEANKDRLCIDILEREMRRNPMA 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185179560|gb|ACC77697.1| NPR1-like protein [Malus x domestica]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/324 (56%), Positives = 234/324 (72%), Gaps = 1/324 (0%)

Query: 24  FFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSAC 83
           FFR L       S  E +PKY ++D +P  G  G+EAF   L Y+YTGKLK  P EVS C
Sbjct: 87  FFRELFKREKGSSGKEDRPKYCMSDFLPY-GDVGYEAFLVFLSYVYTGKLKPSPVEVSTC 145

Query: 84  VDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAF 143
           V + C H +C  ++N+V+ELMYA++  QM D V + +  LL  VGKAL ++V+PIL+ AF
Sbjct: 146 VHNVCAHDACRPAINFVVELMYAASIFQMPDLVSIFERRLLNFVGKALSDNVVPILLVAF 205

Query: 144 HCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHA 203
           HCQLN L   C+ R+A S++D+  LE+ LPDEV  +IK LR    Q+S+ N+   DP+H 
Sbjct: 206 HCQLNQLIDQCVDRVARSDIDDISLEKGLPDEVVKKIKILRRNYQQDSDPNLPPADPLHE 265

Query: 204 KIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNL 263
           K +RRIHKAL SDDVEL+KLLL  SN+TLD+A ALHYAAA C PKV  EVL +  A +NL
Sbjct: 266 KRIRRIHKALDSDDVELVKLLLTESNITLDEANALHYAAAYCDPKVVTEVLALGLADVNL 325

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ 323
           +++RG TVLH+A  R EP ++V LL+KGARASE TSDGQ+AV+ICRR+TR KDY   ++Q
Sbjct: 326 RNSRGYTVLHIAVMRKEPSIIVLLLTKGARASELTSDGQSAVSICRRLTRPKDYHSKTEQ 385

Query: 324 GQETNKDRLCIDVLEREMRRNSMS 347
           GQE NKDR+CIDVLEREMRRN M+
Sbjct: 386 GQEANKDRICIDVLEREMRRNPMA 409

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225348362|gb|ACN87218.1| NPR-1 [Pyrus x bretschneideri]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/324 (57%), Positives = 233/324 (71%), Gaps = 1/324 (0%)

Query: 24  FFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSAC 83
           FFR L       S  E +PKY ++D +P  G  G+EAF   L Y+YTGKLK  P EVS C
Sbjct: 87  FFRELFKRDKGSSGKEDRPKYCMSDFLPY-GDVGYEAFLVFLSYVYTGKLKPSPVEVSTC 145

Query: 84  VDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAF 143
           V + C H +C  ++N+V+ELMYA++  QM D V + +  LL  VGKAL ++V+PILV AF
Sbjct: 146 VHNVCAHDACRPAINFVVELMYAASIFQMPDLVSIFERRLLNFVGKALSDNVIPILVVAF 205

Query: 144 HCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHA 203
           HCQLN L   CI R+A S++D+  LE+ LPDEV  +IK LR    Q+S+ N+   DP+  
Sbjct: 206 HCQLNQLIDQCIDRVARSDIDDISLEKGLPDEVVKKIKILRRNYQQDSDPNLPPADPLLE 265

Query: 204 KIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNL 263
           K +RRIHKAL SDDVEL+KLLL  SN+TLD+A ALHYAAA C PKV  EVL +  A +NL
Sbjct: 266 KRIRRIHKALDSDDVELVKLLLTESNITLDEANALHYAAAYCDPKVVTEVLALGLADVNL 325

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ 323
           ++ARG TVLH+A  R EP ++V LL+KGARASE TSDGQ+AV+ICRR+TR KDY   ++Q
Sbjct: 326 RNARGYTVLHIAVMRKEPSIIVLLLTKGARASELTSDGQSAVSICRRLTRPKDYHSKTEQ 385

Query: 324 GQETNKDRLCIDVLEREMRRNSMS 347
           GQE NKDR+CIDVLEREMRRN M+
Sbjct: 386 GQEANKDRICIDVLEREMRRNPMA 409

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	415
TAIR|locus:2133925	574	NPR4 "NPR1-like protein 4" [Ar	0.771	0.557	0.447	4.7e-72
TAIR|locus:2153192	586	NPR3 "AT5G45110" [Arabidopsis	0.785	0.556	0.416	6e-70
TAIR|locus:2120800	600	AT4G26120 "AT4G26120" [Arabido	0.691	0.478	0.329	2.6e-45
TAIR|locus:2014200	593	NPR1 "AT1G64280" [Arabidopsis	0.708	0.495	0.319	2.7e-37
TAIR|locus:2080595	467	BOP1 "BLADE ON PETIOLE 1" [Ara	0.691	0.614	0.253	2.2e-19
TAIR|locus:2040292	491	BOP2 "BLADE ON PETIOLE2" [Arab	0.686	0.580	0.256	7.6e-18

TAIR|locus:2133925 NPR4 "NPR1-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 148/331 (44%), Positives = 195/331 (58%)

Query:    18 CLSAV--KFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKA 75
             C+ A   KFF  L   + D   SE KPKY + DL+P  G  G EAF   L YIYTG+LK 
Sbjct:    72 CVLAARSKFFLDLF--KKDKDSSEKKPKYQMKDLLPY-GNVGREAFLHFLSYIYTGRLKP 128

Query:    76 PPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDV 135
              P EVS CVD  C H SC  ++++ +ELMYAS   Q+ D V   Q  L   V K+LVE+V
Sbjct:   129 FPIEVSTCVDSVCAHDSCKPAIDFAVELMYASFVFQIPDLVSSFQRKLRNYVEKSLVENV 188

Query:   136 LPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANI 195
             LPIL+ AFHC L  L   CI+R+A S+LD FC+E+ELP EV  +IK LRVKS      NI
Sbjct:   189 LPILLVAFHCDLTQLLDQCIERVARSDLDRFCIEKELPLEVLEKIKQLRVKS-----VNI 243

Query:   196 AEVDPMHAKIVRRIHKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPKVFKEVLN 255
              EV+    +   ++ KA                                  PKV  +VL+
Sbjct:   244 PEVEDKSIERTGKVLKALDSDDVELVKLLLTESDITLDQANGLHYAVAYSDPKVVTQVLD 303

Query:   256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK 315
             +D A +N +++RG TVLH+AA R EP +++ L+ KGA AS+ T DG++AV ICRR+TR K
Sbjct:   304 LDMADVNFRNSRGYTVLHIAAMRREPTIIIPLIQKGANASDFTFDGRSAVNICRRLTRPK 363

Query:   316 DYIEASKQGQETNKDRLCIDVLEREMRRNSM 346
             DY   + + +E +K RLCID+LERE+RRN +
Sbjct:   364 DYHTKTSR-KEPSKYRLCIDILEREIRRNPL 393

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=IEP;RCA;IMP

GO:0009620 "response to fungus" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=IGI;RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0080185 "effector dependent induction by symbiont of host immune response" evidence=IGI

GO:1901149 "salicylic acid binding" evidence=IDA

TAIR|locus:2153192 NPR3 "AT5G45110" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 6.0e-70, Sum P(2) = 6.0e-70
 Identities = 138/331 (41%), Positives = 196/331 (59%)

Query:    18 CLSAV--KFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKA 75
             C+ A   KFF+ L       S +E KPKY L +++P  G    EAF   L YIYTG+LK 
Sbjct:    76 CILAARSKFFQDLFKKEKKISKTE-KPKYQLREMLPY-GAVAHEAFLYFLSYIYTGRLKP 133

Query:    76 PPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDV 135
              P EVS CVD  C H  C  ++++V++LMYAS+ LQ+ + V   Q  L   V K LVE+V
Sbjct:   134 FPLEVSTCVDPVCSHDCCRPAIDFVVQLMYASSVLQVPELVSSFQRRLCNFVEKTLVENV 193

Query:   136 LPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANI 195
             LPIL+ AF+C+L  L   CI+R+A S+L  FC+E+E+P EV+ +IK LR+ S Q+ E + 
Sbjct:   194 LPILMVAFNCKLTQLLDQCIERVARSDLYRFCIEKEVPPEVAEKIKQLRLISPQDEETS- 252

Query:   196 AEVDPMHAKIVRRIHKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPKVFKEVLN 255
              ++     + + +I KA                                  PKV  E+L 
Sbjct:   253 PKISEKLLERIGKILKALDSDDVELVKLLLTESDITLDQANGLHYSVVYSDPKVVAEILA 312

Query:   256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK 315
             +D   +N +++RG TVLH AA R EP ++++L+ KGA ASE TSDG++AV I RR+T  K
Sbjct:   313 LDMGDVNYRNSRGYTVLHFAAMRREPSIIISLIDKGANASEFTSDGRSAVNILRRLTNPK 372

Query:   316 DYIEASKQGQETNKDRLCIDVLEREMRRNSM 346
             DY   + +G+E++K RLCID+LERE+R+N M
Sbjct:   373 DYHTKTAKGRESSKARLCIDILEREIRKNPM 403

GO:0005515 "protein binding" evidence=IPI

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=IGI;RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

GO:0080185 "effector dependent induction by symbiont of host immune response" evidence=IGI

GO:1901149 "salicylic acid binding" evidence=IDA

TAIR|locus:2120800 AT4G26120 "AT4G26120" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 98/297 (32%), Positives = 159/297 (53%)

Query:    53 DGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQM 112
             D + GF++   +L Y+Y+G++++PP   SACVDD C HV+C S V++++E++Y S   Q+
Sbjct:   119 DYEVGFDSVVAVLAYVYSGRVRSPPKGASACVDDDCCHVACRSKVDFMVEVLYLSFVFQI 178

Query:   113 KDRVFLLQHWLLGMVGKALVEDVLPILVAAFHC--QLNMLRSYCIQRIAGSNLDNFCLER 170
             ++ V L +   L +V K +VED+L I      C      L   CI+ I  S+++   LE+
Sbjct:   179 QELVTLYERQFLEIVDKVVVEDILVIFKLDTLCGTTYKKLLDRCIEIIVKSDIELVSLEK 238

Query:   171 ELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAXXXXXXXXXXXXXXXXXX 230
              LP  +  +I  +R       EA   E  P   + V+ I+KA                  
Sbjct:   239 SLPQHIFKQIIDIR-------EALCLE-PPKLERHVKNIYKALDSDDVELVKMLLLEGHT 290

Query:   231 XXXXXXXXXXXXXXXSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK 290
                            + K   ++L ++ A +NL++ RG TVLHVAA R EP+++++LL K
Sbjct:   291 NLDEAYALHFAIAHCAVKTAYDLLELELADVNLRNPRGYTVLHVAAMRKEPKLIISLLMK 350

Query:   291 GARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMS 347
             GA   +TT DG+TA+ I +R+T+  DY  +++ G  + K  LCI+VLE E +   +S
Sbjct:   351 GANILDTTLDGRTALVIVKRLTKADDYKTSTEDGTPSLKGGLCIEVLEHEQKLEYLS 407

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2014200 NPR1 "AT1G64280" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 2.7e-37, P = 2.7e-37
 Identities = 97/304 (31%), Positives = 159/304 (52%)

Query:    53 DGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDACVHVSCPSSVNYVIELMYASAALQM 112
             D + GF++   +L Y+Y+ +++ PP  VS C D+ C HV+C  +V++++E++Y +   ++
Sbjct:   120 DYEVGFDSVVTVLAYVYSSRVRPPPKGVSECADENCCHVACRPAVDFMLEVLYLAFIFKI 179

Query:   113 KDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLR--SYCIQRIAGSNLDNFCLER 170
              + + L Q  LL +V K ++ED L IL  A  C    ++    C + I  SN+D   LE+
Sbjct:   180 PELITLYQRHLLDVVDKVVIEDTLVILKLANICGKACMKLLDRCKEIIVKSNVDMVSLEK 239

Query:   171 ELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAXXXXXXXXXXXXXXXXXX 230
              LP+E+  EI   R       E  + EV P   K V  +HKA                  
Sbjct:   240 SLPEELVKEIIDRR------KELGL-EV-PKVKKHVSNVHKALDSDDIELVKLLLKEDHT 291

Query:   231 XXXXXXXXXXXXXXXSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK 290
                            + K   ++L +D A +N ++ RG TVLHVAA R EP+++++LL K
Sbjct:   292 NLDDACALHFAVAYCNVKTATDLLKLDLADVNHRNPRGYTVLHVAAMRKEPQLILSLLEK 351

Query:   291 GARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFP 350
             GA ASE T +G+TA+ I ++ T   +     +Q + + K RLC+++LE+E +R  + R  
Sbjct:   352 GASASEATLEGRTALMIAKQATMAVECNNIPEQCKHSLKGRLCVEILEQEDKREQIPRDV 411

Query:   351 PKKF 354
             P  F
Sbjct:   412 PPSF 415

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008219 "cell death" evidence=IGI

GO:0009617 "response to bacterium" evidence=RCA;IMP;TAS

GO:0009627 "systemic acquired resistance" evidence=IEP;RCA;TAS

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IMP;TAS

GO:0009611 "response to wounding" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009625 "response to insect" evidence=RCA;IMP

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0009682 "induced systemic resistance" evidence=IMP

GO:0010112 "regulation of systemic acquired resistance" evidence=IMP

TAIR|locus:2080595 BOP1 "BLADE ON PETIOLE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 77/304 (25%), Positives = 143/304 (47%)

Query:    49 LVPCDGKFGFEAFNDILHYIYTGKLKAPPPEV---SACVDDACVHVSCPSSVNYVIELMY 105
             ++P +   G+E F  +L ++Y+G++   P +    S C D  C H  C ++V+  ++++ 
Sbjct:    84 VIPVNS-VGYEVFLLLLQFLYSGQVSIVPHKHEPRSNCGDRGCWHTHCTAAVDLSLDILA 142

Query:   106 ASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDN 165
             A+    ++    L Q  L  MV KA +EDV+ +L+A+    ++ L + C   IA S L  
Sbjct:   143 AARYFGVEQLALLTQKHLTSMVEKASIEDVMKVLIASRKQDMHQLWTTCSYLIAKSGLPQ 202

Query:   166 FCLERELPDEVSSEIKSLRVKSNQESEA------NIAEVDPMHAKIVRRIHKAXXXXXXX 219
               L + LP E+ ++I+ LR+KS+    +      ++     +  + +RR+ +A       
Sbjct:   203 EILAKHLPIELVAKIEELRLKSSMPLRSLMPHHHDLTSTLDLEDQKIRRMRRALDSSDVE 262

Query:   220 XXXXXXXXXXXXXXXXXXXXXXXXXXSPKVFKEVLNMDSAGLNLKDA-RGRTVLHVAARR 278
                                       S +V K +L + +A +N      G+T LH+AA  
Sbjct:   263 LVKLMVMGEGLNLDESLALIYAVENCSREVVKALLELGAADVNYPAGPTGKTALHIAAEM 322

Query:   279 NEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYI-EASKQGQ---ETNKDRLCI 334
               P+++  LL   A  +  T DG T + I R +T   D++ + +  G    E NK RLC+
Sbjct:   323 VSPDMVAVLLDHHADPNVQTVDGITPLDILRTLT--SDFLFKGAIPGLTHIEPNKLRLCL 380

Query:   335 DVLE 338
             ++++
Sbjct:   381 ELVQ 384

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0010022 "meristem determinacy" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010227 "floral organ abscission" evidence=IGI;RCA

GO:0010434 "bract formation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009954 "proximal/distal pattern formation" evidence=IGI;RCA

GO:0048439 "flower morphogenesis" evidence=IGI;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0010254 "nectary development" evidence=IGI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IGI

TAIR|locus:2040292 BOP2 "BLADE ON PETIOLE2" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 79/308 (25%), Positives = 142/308 (46%)

Query:    49 LVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSA---CVDDACVHVSCPSSVNYVIELMY 105
             ++P +   G+E F  +L ++Y+G++   P +      C +  C H  C ++V+  ++ + 
Sbjct:    89 IIPVNS-VGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSAAVDLALDTLA 147

Query:   106 ASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDN 165
             AS    ++    L Q  L  MV KA +EDV+ +L+A+    ++ L + C   +A S L  
Sbjct:   148 ASRYFGVEQLALLTQKQLASMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPP 207

Query:   166 FCLERELPDEVSSEIKSLRVKS----------NQESEANIAEVDPMHAKIVRRIHKAXXX 215
               L + LP +V ++I+ LR+KS          N   + ++A+ D    KI RR+ +A   
Sbjct:   208 EILAKHLPIDVVTKIEELRLKSSIARRSLMPHNHHHDLSVAQ-DLEDQKI-RRMRRALDS 265

Query:   216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPKVFKEVLNMDSAGLNLKDA-RGRTVLHV 274
                                           S +V K +L + +A +N      G+T LH+
Sbjct:   266 SDVELVKLMVMGEGLNLDESLALHYAVESCSREVVKALLELGAADVNYPAGPAGKTPLHI 325

Query:   275 AARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYI-EASKQGQ---ETNKD 330
             AA    P+++  LL   A  +  T  G T + I R +T   D++ + +  G    E NK 
Sbjct:   326 AAEMVSPDMVAVLLDHHADPNVRTVGGITPLDILRTLT--SDFLFKGAVPGLTHIEPNKL 383

Query:   331 RLCIDVLE 338
             RLC+++++
Sbjct:   384 RLCLELVQ 391


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      415       382   0.00091  117 3  11 22  0.48    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  246 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.65u 0.09s 34.74t   Elapsed:  00:00:02
  Total cpu time:  34.65u 0.09s 34.74t   Elapsed:  00:00:02
  Start:  Tue May 21 03:09:16 2013   End:  Tue May 21 03:09:18 2013

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010227 "floral organ abscission" evidence=IGI;RCA

GO:0010434 "bract formation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009954 "proximal/distal pattern formation" evidence=IGI;RCA

GO:0048439 "flower morphogenesis" evidence=IGI;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IGI

GO:0010254 "nectary development" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_II2822 NPR1/NIM1-like regulatory protein (597 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	415
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
pfam12313	203	pfam12313, NPR1_like_C, NPR1/NIM1 like defence pro	9e-14
pfam12313	203	pfam12313, NPR1_like_C, NPR1/NIM1 like defence pro	2e-12
pfam11900	48	pfam11900, DUF3420, Domain of unknown function (DU	1e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.003
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 7/107 (6%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H A  +  +E++KLLL    DV+    D    LH AA     ++ K +L    A +N +
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNAR 69

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA--VAICR 309
           D  G T LH+AAR    +V+  LL  GA  +    DG+T   +A   
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|204877 pfam12313, NPR1_like_C, NPR1/NIM1 like defence protein C terminal

 Score = 69.3 bits (170), Expect = 9e-14
 Identities = 24/40 (60%), Positives = 33/40 (82%)

Query: 309 RRMTRRKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSR 348
           +R+TR KDY   ++QG+E+NKDRLCI++LE+EMRRN M  
Sbjct: 1   KRLTRPKDYNTKTEQGKESNKDRLCIEILEQEMRRNPMPG 40

This family of proteins is found in eukaryotes. Proteins in this family are typically between 251 and 588 amino acids in length. The family is found in association with pfam00023, pfam00651. There are two conserved sequence motifs: LENRV and DLN. NPR1 (NIM1) is a defence protein in many plant species. Length = 203

>gnl|CDD|204877 pfam12313, NPR1_like_C, NPR1/NIM1 like defence protein C terminal

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 29/45 (64%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 353 KFLDCDWSDAYLLENGTPEEQNRKRARFMELKE-VQKAFYKDMAE 396
           K +D D  D   LE GTPEEQ +KR RFMELKE VQKAF KD  E
Sbjct: 146 KIMDDDLPDLAYLEKGTPEEQKQKRMRFMELKEDVQKAFSKDKEE 190

This family of proteins is found in eukaryotes. Proteins in this family are typically between 251 and 588 amino acids in length. The family is found in association with pfam00023, pfam00651. There are two conserved sequence motifs: LENRV and DLN. NPR1 (NIM1) is a defence protein in many plant species. Length = 203

>gnl|CDD|192869 pfam11900, DUF3420, Domain of unknown function (DUF3420)

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 162 NLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIH 210
           +LD+  LE+ELPDEV  +IK LR+KS Q  E N+ EVDP+  K VRRIH
Sbjct: 1   DLDSISLEKELPDEVVKKIKDLRLKS-QLDEPNVPEVDPLPEKRVRRIH 48

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain is found associated with pfam00023. Length = 48

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 209 IHKALHSDDVELLKLLLDV-SNVTLDD-AYALHYAAACCSPKVFKEVLNMDSAGLNLKDA 266
           +H A  + ++EL+KLLL+  ++V L D   ALH AA   + ++ K +L    A +N KD 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHG-ADVNAKDK 59

Query: 267 RGRTVLHVAARRNEPEVMVTLLSKGA 292
            G T LH+AAR    E++  LL  GA
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H A  +  +E++KLLL    DV+    D    LH AA   +  V K +L    A +N +
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNAR 102

Query: 265 DARGRTVLHVAARRNEPEVMVTLL 288
           D  GRT LH+AA+    EV+  LL
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           N +D  GRT LH+AA     EV+  LL  GA  +   +DG+T 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTP 43

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 238 LHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASET 297
           LH AA   + ++ K +L     G ++      T LH+AAR    E++  LL  GA  +  
Sbjct: 1   LHLAAKNGNLELVKLLLE---KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 298 TSDGQTA 304
             DG TA
Sbjct: 58  DKDGNTA 64

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 254 LNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
           L      LN  D  G T LH+AA+    E++  LL  G   +   SDG TA+
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 219 ELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGL--NLKDARGRTVLHVAA 276
           EL++   D +   +     LH  A   S K    VL +  AG+  N ++  G+T LH AA
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSL-VLPLLIAGISINARNRYGQTPLHYAA 265

Query: 277 RRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYI 318
             N P     L++ GA  +  +SDG T +++   M R  +  
Sbjct: 266 VFNNPRACRRLIALGADINAVSSDGNTPLSL---MVRNNNGR 304

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 268 GRTVLHVAARRNEPEVMVTLLSKGA 292
           G T LH+AAR    EV+  LL  GA
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 31/132 (23%)

Query: 200 PMHAKIVRRIHKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLN 255
           P+   I +       S+   +++ LLD  +NV + ++     LH            ++L 
Sbjct: 109 PLLYAISK------KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKID--LKILK 160

Query: 256 -----------MDS--------AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
                       +           +N+KD  G T LH A   N PE +  LL  GA  + 
Sbjct: 161 LLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220

Query: 297 TTSDGQTAVAIC 308
               G T + I 
Sbjct: 221 VNKYGDTPLHIA 232

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
           GRT LH AA     E++  LL KG   + T  DG TA+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTAL 38

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	415
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.81
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.68
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.63
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.62
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.61
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.61
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.52
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.5
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.46
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.34
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.28
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.09
PF13606	30	Ank_3: Ankyrin repeat	99.06
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.05
PHA02790	480	Kelch-like protein; Provisional	99.04
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.0
PHA02713	557	hypothetical protein; Provisional	98.94
KOG4350	620	consensus Uncharacterized conserved protein, conta	98.92
PF12313	207	NPR1_like_C: NPR1/NIM1 like defence protein C term	98.9
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.88
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.84
PHA03098	534	kelch-like protein; Provisional	98.83
KOG0522	560	consensus Ankyrin repeat protein [General function	98.81
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.79
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.75
KOG4591	280	consensus Uncharacterized conserved protein, conta	98.74
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.72
PF13606	30	Ank_3: Ankyrin repeat	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.68
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.64
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.62
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.56
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.55
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.53
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.52
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.51
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
KOG2384	223	consensus Major histocompatibility complex protein	98.47
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.43
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.28
KOG0511	516	consensus Ankyrin repeat protein [General function	98.27
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.18
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.92
KOG0511	516	consensus Ankyrin repeat protein [General function	97.91
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.83
KOG2384	223	consensus Major histocompatibility complex protein	97.72
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	97.71
KOG2505	591	consensus Ankyrin repeat protein [General function	97.51
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.45
KOG2838	401	consensus Uncharacterized conserved protein, conta	96.87
KOG2505	591	consensus Ankyrin repeat protein [General function	96.63
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.42
KOG2838	401	consensus Uncharacterized conserved protein, conta	95.57
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.98
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.63
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.37
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.41
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.5
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.46
KOG4682	488	consensus Uncharacterized conserved protein, conta	87.3

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=272.05  Aligned_cols=212  Identities=9%  Similarity=-0.065  Sum_probs=176.6

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .+.||||+|+..|+.+++++|++.|++++..    +|.||||+|+..|+.+++++|++.  +++++..+..|.||||+|+
T Consensus        29 ~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~----d~~TpLh~Aa~~g~~eiV~lLL~~--Gadvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         29 HGHSALYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS--GMDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH
Confidence            4678899999999999999999999988763    368999999999999999999987  7788888999999999998


Q ss_pred             HHHhhhhh-hccccccCccCCCCCCccc-cHHHHHHHhcCCHHHHHHHHHCC-C-CC-CCCchHHHHHHHCCCHHHHHHH
Q 014994          179 EIKSLRVK-SNQESEANIAEVDPMHAKI-VRRIHKALHSDDVELLKLLLDVS-N-VT-LDDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       179 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g-~-~~-~~g~tpL~~A~~~g~~~~v~~L  253 (415)
                      ..+...+. .++..|+++   +.++..| .||||+|+..|+.++|++|++++ + .| ..|.||||+|+..|+.++++.|
T Consensus       103 ~~g~~eivk~Ll~~gadi---n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lL  179 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRL---MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL  179 (284)
T ss_pred             HcCCHHHHHHHHHCCCCc---CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHH
Confidence            88877763 344666554   4455566 48999999999999999999987 3 34 2578999999999999999999


Q ss_pred             HhcCCCCccccCCCCChH-HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          254 LNMDSAGLNLKDARGRTV-LHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       254 l~~~gadvn~~d~~g~Tp-Lh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      |+. |+++|.+|..|.|| ||+|+..|+.++|++||++|||+|.+|..| |||      ++.+++++|+++..+.
T Consensus       180 L~~-gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        180 LDY-MTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             HHC-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            985 89999999988876 999999999999999999999999998854 666      7788899998876543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4e-35  Score=287.27  Aligned_cols=221  Identities=16%  Similarity=0.097  Sum_probs=199.6

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 014994          101 IELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEI  180 (415)
Q Consensus       101 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~  180 (415)
                      .++||.|+..|+.+++++|++.|++++.+  +.+|.||||+|+..|+.+++++|++.  +++++..+..+.||||.|+..
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFE--IYDGISPIKLAMKFRDSEAIKLLMKH--GAIPDVKYPDIESELHDAVEE   78 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccCCCcccHHHHHHHC
Confidence            35799999999999999999999999986  77999999999999999999999998  667888888999999999888


Q ss_pred             Hhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHh
Q 014994          181 KSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLN  255 (415)
Q Consensus       181 ~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~  255 (415)
                      +.... ..++..|+...  +..+..|.||||+|+..|+.+++++|+++| ++   +..|.||||+|+..|+.++++.|++
T Consensus        79 g~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~  156 (413)
T PHA02875         79 GDVKAVEELLDLGKFAD--DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID  156 (413)
T ss_pred             CCHHHHHHHHHcCCccc--ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88776 33445554433  234467999999999999999999999999 54   5679999999999999999999998


Q ss_pred             cCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQ-TAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       256 ~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~-tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      . |++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+.+++++|++.|++++
T Consensus       157 ~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        157 H-KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             c-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence            6 899999999999999999999999999999999999999998875 89999999999999999999999985

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=265.12  Aligned_cols=207  Identities=12%  Similarity=0.015  Sum_probs=179.1

Q ss_pred             HcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhh-
Q 014994          109 ALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKS-  187 (415)
Q Consensus       109 ~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~-  187 (415)
                      ..+..+++++|++.|++.  +  |.+|.||||+|+.+|+.+++++|++.  +++++..  +|.||||+|+..+...+.. 
T Consensus         8 ~~~~~~~~~~Lis~~a~~--~--D~~G~TpLh~Aa~~g~~eiv~~Ll~~--ga~~n~~--d~~TpLh~Aa~~g~~eiV~l   79 (284)
T PHA02791          8 TWKSKQLKSFLSSKDAFK--A--DVHGHSALYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDTKIVKI   79 (284)
T ss_pred             ccCHHHHHHHHHhCCCCC--C--CCCCCcHHHHHHHcCCHHHHHHHHHC--cCCCcCC--CCCCHHHHHHHCCCHHHHHH
Confidence            356799999999998853  3  88999999999999999999999998  5566654  4799999999888877643 


Q ss_pred             ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC---CCCc-hHHHHHHHCCCHHHHHHHHhcCCCCcc
Q 014994          188 NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT---LDDA-YALHYAAACCSPKVFKEVLNMDSAGLN  262 (415)
Q Consensus       188 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~---~~g~-tpL~~A~~~g~~~~v~~Ll~~~gadvn  262 (415)
                      ++..|++   ++.+|..|.||||+|+..|+.+++++|+++| +++   ..|+ ||||+|+..|+.+++++||.. |.+. 
T Consensus        80 LL~~Gad---vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~-~~~~-  154 (284)
T PHA02791         80 LLFSGMD---DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST-  154 (284)
T ss_pred             HHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc-CCcc-
Confidence            4466655   4556779999999999999999999999999 653   4564 899999999999999999986 5443 


Q ss_pred             ccC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCcchHHHHHhcCCCccc
Q 014994          263 LKD-ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA-VAICRRMTRRKDYIEASKQGQETNK  329 (415)
Q Consensus       263 ~~d-~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tp-L~~A~~~~~~~~v~~l~~~g~~~~~  329 (415)
                       .| ..|+||||+|+.+|+.+++++||++||++|.+|..|.|| ||+|+..|+.+++++|++.|++++.
T Consensus       155 -~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~  222 (284)
T PHA02791        155 -FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYS  222 (284)
T ss_pred             -cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCcc
Confidence             23 358999999999999999999999999999999999987 9999999999999999999999863

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-35  Score=238.19  Aligned_cols=200  Identities=22%  Similarity=0.126  Sum_probs=135.1

Q ss_pred             HHHHHHcCcHHHHHHHHHhCC-CcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHh
Q 014994          104 MYASAALQMKDRVFLLQHWLL-GMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKS  182 (415)
Q Consensus       104 L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~  182 (415)
                      .+.++......-++.+++... +.+.+ .|.+|.||||+|+..|+.+++.+|+. ..+..+|.+|..||||||+|+..+.
T Consensus         7 ~~~~~~~~~~~kveel~~s~~kSL~~r-~dqD~Rt~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    7 GKAICENCEEFKVEELIQSDPKSLNAR-DDQDGRTPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             HHHHHhhchHHHHHHHHhcChhhhhcc-ccccCCceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCc
Confidence            455555555555555555544 55554 35699999999999999999999997 3455666667777777777766665


Q ss_pred             hhhh-hcccc-ccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhc
Q 014994          183 LRVK-SNQES-EANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNM  256 (415)
Q Consensus       183 ~~~~-~~~~~-~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~  256 (415)
                      ..+. .++.. |+   ++|..+..|+|+||+|+..|..+++++|+++| .   .|..|.||||-|+.-|..+++++|+..
T Consensus        85 ~evVk~Ll~r~~a---dvna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen   85 DEVVKELLNRSGA---DVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             HHHHHHHhcCCCC---CcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc
Confidence            5552 22222 33   33444456777777777777777777777777 2   255667777777777777777777765


Q ss_pred             CCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 014994          257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR  310 (415)
Q Consensus       257 ~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~  310 (415)
                       |+.+|.+|..|+||||.|...|+.++..+|+++|||+...|+.| ||+..|+.
T Consensus       162 -~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  162 -GAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             -CCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence             67777777777777777766667777777777777777777766 77665543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.5e-34  Score=287.31  Aligned_cols=222  Identities=20%  Similarity=0.239  Sum_probs=202.2

Q ss_pred             hhHHHHHH-----HHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHH--HcCcHHHHHHHHHhhcCCCCCccccCCC
Q 014994           99 YVIELMYA-----SAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAF--HCQLNMLRSYCIQRIAGSNLDNFCLERE  171 (415)
Q Consensus        99 ~~~~~L~~-----A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~--~~g~~~lv~~ll~~~~~~~~~~~~~~g~  171 (415)
                      .+.+|||+     |+..|+.+++++|++.|++++..  +..|.||||+|+  ..|+.+++++|++.  +.+++..+..|.
T Consensus        67 ~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~--d~~g~tpL~~A~~~~~~~~~iv~~Ll~~--g~~~~~~~~~g~  142 (480)
T PHA03100         67 NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAP--DNNGITPLLYAISKKSNSYSIVEYLLDN--GANVNIKNSDGE  142 (480)
T ss_pred             cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCC--CCCCCchhhHHHhcccChHHHHHHHHHc--CCCCCccCCCCC
Confidence            35688999     99999999999999999999775  899999999999  99999999999998  778999999999


Q ss_pred             ChHHHHHHHH--hhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC---CCC------chHH
Q 014994          172 LPDEVSSEIK--SLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT---LDD------AYAL  238 (415)
Q Consensus       172 tpl~~a~~~~--~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~---~~g------~tpL  238 (415)
                      ||||+|+..+  ...+ ..++..|+++   +..+..|.||||+|+..|+.+++++|+++| +++   ..|      .|||
T Consensus       143 t~L~~A~~~~~~~~~iv~~Ll~~g~di---n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l  219 (480)
T PHA03100        143 NLLHLYLESNKIDLKILKLLIDKGVDI---NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPL  219 (480)
T ss_pred             cHHHHHHHcCCChHHHHHHHHHCCCCc---ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH
Confidence            9999999887  6665 4455777664   445568999999999999999999999999 543   456      8999


Q ss_pred             HHHHHCCC--HHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcch
Q 014994          239 HYAAACCS--PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKD  316 (415)
Q Consensus       239 ~~A~~~g~--~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~  316 (415)
                      |+|+..|+  .++++.|++. |+++|.+|..|+||||+|+..|+.+++++|+++|+|+|.+|..|.||||+|+..++.++
T Consensus       220 ~~a~~~~~~~~~iv~~Ll~~-g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~i  298 (480)
T PHA03100        220 HIAACYNEITLEVVNYLLSY-GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEI  298 (480)
T ss_pred             HHHHHhCcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHH
Confidence            99999999  9999999996 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcc
Q 014994          317 YIEASKQGQETN  328 (415)
Q Consensus       317 v~~l~~~g~~~~  328 (415)
                      ++.|++.|++..
T Consensus       299 v~~Ll~~g~~i~  310 (480)
T PHA03100        299 FKLLLNNGPSIK  310 (480)
T ss_pred             HHHHHhcCCCHH
Confidence            999999999765

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-34  Score=286.09  Aligned_cols=223  Identities=21%  Similarity=0.148  Sum_probs=204.9

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHH-----HHHcCcHHHHHHHHHhhcCCCCCccccCCCC
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVA-----AFHCQLNMLRSYCIQRIAGSNLDNFCLEREL  172 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~-----A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~t  172 (415)
                      ....+|||.|+..|+.++|++|++.|++++..  +..|.||||+     |+..|+.+++++|++.  +++++..+..|.|
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~--~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~--ga~i~~~d~~g~t  108 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLDNGADINSS--TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY--GANVNAPDNNGIT  108 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHHcCCCCCCc--cccCcCHHHHHHHHHHHhhchHHHHHHHHHC--CCCCCCCCCCCCc
Confidence            34678999999999999999999999999986  8889999999     9999999999999998  7788999999999


Q ss_pred             hHHHHH--HHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcC--CHHHHHHHHHCC-CC---CCCCchHHHHHHH
Q 014994          173 PDEVSS--EIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSD--DVELLKLLLDVS-NV---TLDDAYALHYAAA  243 (415)
Q Consensus       173 pl~~a~--~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~  243 (415)
                      |||+|+  ..+...+ ..+++.|+++   +..+..|.||||+|+..|  +.+++++|+++| ++   +..|.||||+|+.
T Consensus       109 pL~~A~~~~~~~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~  185 (480)
T PHA03100        109 PLLYAISKKSNSYSIVEYLLDNGANV---NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVE  185 (480)
T ss_pred             hhhHHHhcccChHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence            999999  7777776 4445767654   455679999999999999  999999999999 54   5689999999999


Q ss_pred             CCCHHHHHHHHhcCCCCccccCCCC------ChHHHHHHHcCC--HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcc
Q 014994          244 CCSPKVFKEVLNMDSAGLNLKDARG------RTVLHVAARRNE--PEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK  315 (415)
Q Consensus       244 ~g~~~~v~~Ll~~~gadvn~~d~~g------~TpLh~A~~~~~--~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~  315 (415)
                      .|+.++++.|++. |++++..+..|      .||||+|+..|+  .+++++|+++|+++|.+|..|.||||+|+..|+.+
T Consensus       186 ~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~  264 (480)
T PHA03100        186 KGNIDVIKFLLDN-GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE  264 (480)
T ss_pred             hCCHHHHHHHHHc-CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999996 99999999999      999999999999  99999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCCcc
Q 014994          316 DYIEASKQGQETN  328 (415)
Q Consensus       316 ~v~~l~~~g~~~~  328 (415)
                      +++.|++.|++++
T Consensus       265 iv~~Ll~~gad~n  277 (480)
T PHA03100        265 FVKYLLDLGANPN  277 (480)
T ss_pred             HHHHHHHcCCCCC
Confidence            9999999999875

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-34  Score=280.32  Aligned_cols=221  Identities=16%  Similarity=0.062  Sum_probs=194.3

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhc--------------------
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIA--------------------  159 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~--------------------  159 (415)
                      +.||||.|+..|+.++|++|++.|++++..  +..|.||||.|+..|+.+++++|++.++                    
T Consensus        35 ~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~--~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         35 TTTPLIDAIRSGDAKIVELFIKHGADINHI--NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            568999999999999999999999999986  8889999999999999999999998643                    


Q ss_pred             -CCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCC
Q 014994          160 -GSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLD  233 (415)
Q Consensus       160 -~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~  233 (415)
                       +.+++..+..|.||||+|+..+...+ ..++..|+++   +..|..|.||||+|+..|+.+++++|+++| ++   +..
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~---n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~  189 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV---NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN  189 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC
Confidence             34677888999999999998887776 4445666554   456679999999999999999999999999 44   578


Q ss_pred             CchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC-
Q 014994          234 DAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT-  312 (415)
Q Consensus       234 g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~-  312 (415)
                      |+||||+|+..|+.+++++|++. |++++.++..|+||||+|+..+. +++++|+ .|+++|.+|..|+||||+|+..+ 
T Consensus       190 g~tpL~~A~~~g~~~iv~~Ll~~-g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~  266 (434)
T PHA02874        190 GESPLHNAAEYGDYACIKLLIDH-GNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPC  266 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCC
Confidence            99999999999999999999986 89999999999999999998765 5667776 68999999999999999999876 


Q ss_pred             CcchHHHHHhcCCCcc
Q 014994          313 RRKDYIEASKQGQETN  328 (415)
Q Consensus       313 ~~~~v~~l~~~g~~~~  328 (415)
                      +.+++++|+..|++++
T Consensus       267 ~~~iv~~Ll~~gad~n  282 (434)
T PHA02874        267 DIDIIDILLYHKADIS  282 (434)
T ss_pred             cHHHHHHHHHCcCCCC
Confidence            7899999999998885

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.5e-34  Score=283.89  Aligned_cols=218  Identities=17%  Similarity=0.121  Sum_probs=186.0

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      +..+|||.|+..|+.++|++|++.|++++..  |.+|.||||+|+..|+.++++.|++.....+.    ..+.+|++.|.
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~  109 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQP--DHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAF  109 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHH
Confidence            4568999999999999999999999999986  99999999999999999999999987443222    45677887774


Q ss_pred             HHHhhh----------------------------------hhhccccccCccCCCCCCcc-ccHHHHHHHhcCCHHHHHH
Q 014994          179 EIKSLR----------------------------------VKSNQESEANIAEVDPMHAK-IVRRIHKALHSDDVELLKL  223 (415)
Q Consensus       179 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~  223 (415)
                      ..+...                                  +..++..|++   ++..+.. |.||||+|+..|+.+++++
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad---in~~~~~~g~tpLh~A~~~~~~~iv~~  186 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD---INMKDRHKGNTALHYATENKDQRLTEL  186 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC---CCccCCCCCCCHHHHHHhCCCHHHHHH
Confidence            433221                                  1233344544   4455567 9999999999999999999


Q ss_pred             HHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHc-CCHHHHHHHHhCCCCCCCCC
Q 014994          224 LLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR-NEPEVMVTLLSKGARASETT  298 (415)
Q Consensus       224 Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~-~~~~~v~~Ll~~Gadin~~d  298 (415)
                      |++.| ++   |..|+||||+|+..|+.++++.|++. |+++|.+|..|+||||+|+.. ++.+++++|+++|+++|.++
T Consensus       187 Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN-GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            99999 54   56899999999999999999999986 999999999999999999976 78999999999999999998


Q ss_pred             C-CCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          299 S-DGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       299 ~-~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      . .|.||||+|  .++.+++++|++.|++++
T Consensus       266 ~~~g~TpLh~A--~~~~~~v~~Ll~~gadin  294 (477)
T PHA02878        266 YILGLTALHSS--IKSERKLKLLLEYGADIN  294 (477)
T ss_pred             CCCCCCHHHHH--ccCHHHHHHHHHCCCCCC
Confidence            6 899999999  567889999999999886

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-33  Score=280.92  Aligned_cols=221  Identities=17%  Similarity=0.127  Sum_probs=134.6

Q ss_pred             hhHHHHHHHHHcC---cHHHHHHHHHhCCCcccccccCCChhHHHHHHHcC-cHHHHHHHHHhhcCCCCCccccCCCChH
Q 014994           99 YVIELMYASAALQ---MKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQ-LNMLRSYCIQRIAGSNLDNFCLERELPD  174 (415)
Q Consensus        99 ~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g-~~~lv~~ll~~~~~~~~~~~~~~g~tpl  174 (415)
                      .+.||||+|+..|   ..+++++|++.|+++|.+  +..|.||||+|+..| +.+++++|++.  +++++..+..|.|||
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~--~~~g~TpLh~A~~~~~~~~iv~lLl~~--ga~in~~~~~g~tpL  121 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP--ERCGFTPLHLYLYNATTLDVIKLLIKA--GADVNAKDKVGRTPL  121 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCcHHHHHHHHHc--CCCCCCCCCCCCCHH
Confidence            4567888888887   888888888888888886  778888888888888 48888888887  677888888888888


Q ss_pred             HHHHHH--Hhhh-hhhccccccCccCCCCCCccccHHHHHHHhcC--CHHHHHHHHHCC-C---CCCCCchHHHHHHHC-
Q 014994          175 EVSSEI--KSLR-VKSNQESEANIAEVDPMHAKIVRRIHKALHSD--DVELLKLLLDVS-N---VTLDDAYALHYAAAC-  244 (415)
Q Consensus       175 ~~a~~~--~~~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~-  244 (415)
                      |+|+..  .... +..++..|+++.   ..|..|.||||+|+..+  +.+++++|+++| +   .|..|+||||+|+.. 
T Consensus       122 h~a~~~~~~~~~iv~~Ll~~gad~~---~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        122 HVYLSGFNINPKVIRLLLRKGADVN---ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF  198 (471)
T ss_pred             HHHhhCCcCCHHHHHHHHHcCCCCC---ccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHC
Confidence            888732  2222 234445565543   34456677777666554  456666666666 2   234455566555543 


Q ss_pred             -CCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCH--HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHH
Q 014994          245 -CSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEP--EVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEAS  321 (415)
Q Consensus       245 -g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~--~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~  321 (415)
                       ++.++++.|+.. |++++.+|..|+||||+|+..|+.  .+++.|++.|+++|.+|..|+||||+|+..|+.++++.|+
T Consensus       199 ~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL  277 (471)
T PHA03095        199 KPRARIVRELIRA-GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI  277 (471)
T ss_pred             CCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence             344555555443 455555555555555555444432  3444444445555544444555555555444444444444


Q ss_pred             hcCCCc
Q 014994          322 KQGQET  327 (415)
Q Consensus       322 ~~g~~~  327 (415)
                      +.|+++
T Consensus       278 ~~gad~  283 (471)
T PHA03095        278 ALGADI  283 (471)
T ss_pred             HcCCCC
Confidence            444444

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-33  Score=281.50  Aligned_cols=222  Identities=17%  Similarity=0.164  Sum_probs=196.8

Q ss_pred             hhHHHHHHHHHcC-cHHHHHHHHHhCCCcccccccCCChhHHHHHH--HcCcHHHHHHHHHhhcCCCCCccccCCCChHH
Q 014994           99 YVIELMYASAALQ-MKDRVFLLQHWLLGMVGKALVEDVLPILVAAF--HCQLNMLRSYCIQRIAGSNLDNFCLERELPDE  175 (415)
Q Consensus        99 ~~~~~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~--~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~  175 (415)
                      .+.||||+|+..| ..+++++|++.|++++.+  +..|.||||+|+  ..++.+++++|++.  +++++..+..|.||||
T Consensus        82 ~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~--~~~g~tpLh~a~~~~~~~~~iv~~Ll~~--gad~~~~d~~g~tpL~  157 (471)
T PHA03095         82 CGFTPLHLYLYNATTLDVIKLLIKAGADVNAK--DKVGRTPLHVYLSGFNINPKVIRLLLRK--GADVNALDLYGMTPLA  157 (471)
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHhhCCcCCHHHHHHHHHc--CCCCCccCCCCCCHHH
Confidence            5789999999999 699999999999999996  889999999999  55679999999998  7899999999999999


Q ss_pred             HHHHHHh--hh-hhhccccccCccCCCCCCccccHHHHHHHhc--CCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCC
Q 014994          176 VSSEIKS--LR-VKSNQESEANIAEVDPMHAKIVRRIHKALHS--DDVELLKLLLDVS-N---VTLDDAYALHYAAACCS  246 (415)
Q Consensus       176 ~a~~~~~--~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~  246 (415)
                      +|.....  .. +..++..|+++...   |..|.||||+|+..  ++.+++++|++.| +   .|..|+||||+|+..|+
T Consensus       158 ~a~~~~~~~~~iv~~Ll~~g~~~~~~---d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~  234 (471)
T PHA03095        158 VLLKSRNANVELLRLLIDAGADVYAV---DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS  234 (471)
T ss_pred             HHHHcCCCCHHHHHHHHHcCCCCccc---CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC
Confidence            9866542  22 34455677665544   67899999999875  7889999999999 4   46789999999999987


Q ss_pred             H--HHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          247 P--KVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       247 ~--~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      .  .++..|+.. |+++|.+|..|+||||+|+..|+.+++++||++|||+|.+|.+|+||||+|+..|+.++++.+++.+
T Consensus       235 ~~~~~v~~ll~~-g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        235 CKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             chHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence            5  577778875 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcc
Q 014994          325 QETN  328 (415)
Q Consensus       325 ~~~~  328 (415)
                      .++.
T Consensus       314 ~~~~  317 (471)
T PHA03095        314 PSAE  317 (471)
T ss_pred             CCHH
Confidence            8764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=274.57  Aligned_cols=228  Identities=20%  Similarity=0.145  Sum_probs=202.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHH---hhcCCCCCccccCCCChH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQ---RIAGSNLDNFCLERELPD  174 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~---~~~~~~~~~~~~~g~tpl  174 (415)
                      ..+.||||.|+..+..|..+.|++.|+++-..  |.+|.+|+|.|+.+|..++.+..+.   ......+|..+.+|.|||
T Consensus       152 e~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~--~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pL  229 (929)
T KOG0510|consen  152 ENGFTPLHLAARKNKVEAKKELINKGADPCKS--DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPL  229 (929)
T ss_pred             cCCCchhhHHHhcChHHHHHHHHhcCCCCCcc--cCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcch
Confidence            44778999999999999889999999999775  8899999999999999999999888   223678888999999999


Q ss_pred             HHHHHHHhhhh-hhccccccCccC------------CCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C---CCCCCchH
Q 014994          175 EVSSEIKSLRV-KSNQESEANIAE------------VDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N---VTLDDAYA  237 (415)
Q Consensus       175 ~~a~~~~~~~~-~~~~~~~~~~~~------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tp  237 (415)
                      |.|.+.+.+.. +..+..|+..+.            ++..|.+|.||||+||+.|+.+.++.|+..| +   .|.++.||
T Consensus       230 hlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~sp  309 (929)
T KOG0510|consen  230 HLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESP  309 (929)
T ss_pred             hhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCc
Confidence            99988887766 444555544332            6778899999999999999999999999999 4   46789999


Q ss_pred             HHHHHHCCCHHHHHHHHh-cCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC---CCCCCCCcHHHHHHHcCC
Q 014994          238 LHYAAACCSPKVFKEVLN-MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARAS---ETTSDGQTAVAICRRMTR  313 (415)
Q Consensus       238 L~~A~~~g~~~~v~~Ll~-~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin---~~d~~g~tpL~~A~~~~~  313 (415)
                      ||.||..|+.++|+.||+ ..-...|..|-.|.||||+|+.+||..++++||+.||+.+   ..|.+|.||||+|+..|+
T Consensus       310 LH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~  389 (929)
T KOG0510|consen  310 LHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGN  389 (929)
T ss_pred             hHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhcc
Confidence            999999999999999998 4446789999999999999999999999999999999988   669999999999999999


Q ss_pred             cchHHHHHhcCCCc
Q 014994          314 RKDYIEASKQGQET  327 (415)
Q Consensus       314 ~~~v~~l~~~g~~~  327 (415)
                      ...|..|+..|++.
T Consensus       390 ~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  390 TSAVQKLISHGADI  403 (929)
T ss_pred             HHHHHHHHHcCCce
Confidence            99999999999988

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-32  Score=271.32  Aligned_cols=218  Identities=16%  Similarity=0.118  Sum_probs=189.3

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCC-----------------------cccccccCCChhHHHHHHHcCcHHHHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLG-----------------------MVGKALVEDVLPILVAAFHCQLNMLRSYCIQ  156 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~-----------------------~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~  156 (415)
                      +.+|||.|+..|+.+++++|+++|++                       ++.+  +..|.||||+|+..|+.+++++|++
T Consensus        68 ~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~--~~~g~T~Lh~A~~~~~~~~v~~Ll~  145 (434)
T PHA02874         68 IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK--DAELKTFLHYAIKKGDLESIKMLFE  145 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCC--CCCCccHHHHHHHCCCHHHHHHHHh
Confidence            56889999999999999999887765                       4443  7889999999999999999999999


Q ss_pred             hhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---C
Q 014994          157 RIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---T  231 (415)
Q Consensus       157 ~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~  231 (415)
                      .  +.+++..+..|.||||+|+..+...+ ..++..|+++   +..+..|.||||+|+..|+.+++++|++.| ++   +
T Consensus       146 ~--gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~---n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~  220 (434)
T PHA02874        146 Y--GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA---NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC  220 (434)
T ss_pred             C--CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCC
Confidence            8  78899999999999999988877776 4444666554   445678999999999999999999999999 43   5


Q ss_pred             CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 014994          232 LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRN-EPEVMVTLLSKGARASETTSDGQTAVAICRR  310 (415)
Q Consensus       232 ~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~-~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~  310 (415)
                      ..|.||||+|+..+. ..+..|+.  |+++|.+|..|+||||+|+..+ +.+++++|+++|+|++.+|..|.||||+|+.
T Consensus       221 ~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~  297 (434)
T PHA02874        221 KNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK  297 (434)
T ss_pred             CCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            689999999999865 56666663  8999999999999999999875 8899999999999999999999999999999


Q ss_pred             cC-CcchHHHHHhcCCCc
Q 014994          311 MT-RRKDYIEASKQGQET  327 (415)
Q Consensus       311 ~~-~~~~v~~l~~~g~~~  327 (415)
                      .+ +...++.++..+...
T Consensus       298 ~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        298 YINKDPVIKDIIANAVLI  315 (434)
T ss_pred             hCCccHHHHHHHHhcCch
Confidence            87 677888888887654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.5e-33  Score=273.49  Aligned_cols=217  Identities=11%  Similarity=0.066  Sum_probs=185.3

Q ss_pred             HHHHHHHH--HcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994          101 IELMYASA--ALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus       101 ~~~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .++||.++  ..+..+++++|+++|+++|.+  |.+|.||||+|+..|+.+++++|++.  +++++.+|..|.||||+|.
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~--d~~G~TpLh~Aa~~g~~eiv~lLL~~--GAdin~~d~~g~TpLh~A~  113 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNET--DDDGNYPLHIASKINNNRIVAMLLTH--GADPNACDKQHKTPLYYLS  113 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHH
Confidence            45688765  445789999999999999997  99999999999999999999999998  7899999999999999987


Q ss_pred             HHHh--hh-hhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCC--CHHH
Q 014994          179 EIKS--LR-VKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACC--SPKV  249 (415)
Q Consensus       179 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g--~~~~  249 (415)
                      ....  .. +..++..|++++.  ..|..|.|||| |+..|+.+++++|++.| ++   |..|+||||+|+..+  +.++
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~--~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~  190 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINN--SVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAST  190 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCccc--ccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHH
Confidence            6442  22 2445577766542  24678999997 66779999999999999 44   678999999998765  4689


Q ss_pred             HHHHHhcCCCCccccCCCCChHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC-cchHHHHHhcCCC
Q 014994          250 FKEVLNMDSAGLNLKDARGRTVLHVAARRN--EPEVMVTLLSKGARASETTSDGQTAVAICRRMTR-RKDYIEASKQGQE  326 (415)
Q Consensus       250 v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~--~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~-~~~v~~l~~~g~~  326 (415)
                      +++|++. |+|+|.+|.+|+||||+|+..+  +.+++++|++ |+++|.+|..|.||||+|+..++ .++++.|+..|..
T Consensus       191 v~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        191 ISWMMKL-GISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV  268 (446)
T ss_pred             HHHHHHc-CCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence            9999986 9999999999999999999986  8899999995 99999999999999999999988 4788888888754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.1e-33  Score=271.30  Aligned_cols=220  Identities=12%  Similarity=0.024  Sum_probs=184.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCc--HHHHHHHHHhhcCCCCCc-cccCCCChH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQL--NMLRSYCIQRIAGSNLDN-FCLERELPD  174 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~--~~lv~~ll~~~~~~~~~~-~~~~g~tpl  174 (415)
                      ..+.||||+|+..|+.+++++|+++|++++.+  |..|.||||+|+..++  .+++++|++.  +++++. .+..|.|||
T Consensus        70 ~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~--d~~g~TpLh~A~~~~~~~~e~v~lLl~~--Gadin~~~d~~g~tpL  145 (446)
T PHA02946         70 DDGNYPLHIASKINNNRIVAMLLTHGADPNAC--DKQHKTPLYYLSGTDDEVIERINLLVQY--GAKINNSVDEEGCGPL  145 (446)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCcccccCCCCCcHH
Confidence            34789999999999999999999999999987  9999999999998775  7899999998  778884 688999999


Q ss_pred             HHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcC--CHHHHHHHHHCC-CC---CCCCchHHHHHHHCC--C
Q 014994          175 EVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSD--DVELLKLLLDVS-NV---TLDDAYALHYAAACC--S  246 (415)
Q Consensus       175 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g--~  246 (415)
                      +.|.....-.+..++..|++   ++.+|..|+||||+|+..+  +.+++++|++.| ++   |..|+||||+|+..|  +
T Consensus       146 ~aa~~~~~~vv~~Ll~~gad---~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        146 LACTDPSERVFKKIMSIGFE---ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HHHHCCChHHHHHHHhcccc---ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc
Confidence            86644333333445566654   4556789999999998755  479999999999 54   578999999999986  7


Q ss_pred             HHHHHHHHhcCCCCccccCCCCChHHHHHHHcCC-HHHHHHHHhCCCCCCC--------------------C-CCCCCcH
Q 014994          247 PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNE-PEVMVTLLSKGARASE--------------------T-TSDGQTA  304 (415)
Q Consensus       247 ~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~-~~~v~~Ll~~Gadin~--------------------~-d~~g~tp  304 (415)
                      .++++.|+.  |+++|.+|..|+||||+|+..++ .+++++|+++|++++.                    . +..|.||
T Consensus       223 ~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~Tp  300 (446)
T PHA02946        223 VDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTD  300 (446)
T ss_pred             HHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCH
Confidence            888988884  79999999999999999999988 5899999999986432                    1 2357899


Q ss_pred             HHHHHHcCCcchHHHHHhcCCC
Q 014994          305 VAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       305 L~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      ||+|+..|+.+++++|++.|..
T Consensus       301 Lh~Aa~~g~~eivk~Ll~~~~~  322 (446)
T PHA02946        301 FKMAVEVGSIRCVKYLLDNDII  322 (446)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCc
Confidence            9999999999999999998853

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7.4e-33  Score=279.65  Aligned_cols=224  Identities=13%  Similarity=0.007  Sum_probs=163.2

Q ss_pred             hhhHHHHHHHHHcCc--HHHHHHHHHhCCCcccccccCCChhHHHHH---------------------------------
Q 014994           98 NYVIELMYASAALQM--KDRVFLLQHWLLGMVGKALVEDVLPILVAA---------------------------------  142 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A---------------------------------  142 (415)
                      ..+.||||+|+..|.  .++|++|++.|+++|.+  +..|.||||+|                                 
T Consensus       210 ~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k--D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~  287 (764)
T PHA02716        210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMK--CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHS  287 (764)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHH
Confidence            346788888888874  47888888888888886  78888888865                                 


Q ss_pred             ----HHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH--Hhhhh-hhccccccCccCCCCCCccccHHHHHHHh-
Q 014994          143 ----FHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEI--KSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALH-  214 (415)
Q Consensus       143 ----~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~--~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-  214 (415)
                          +..|+.+++++|++.  +++++.+|..|+||||+|...  ....+ ..+++.|++   ++.+|..|+||||+|+. 
T Consensus       288 ~i~AA~~g~leiVklLLe~--GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD---IN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        288 YITLARNIDISVVYSFLQP--GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND---LNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             HHHHHHcCCHHHHHHHHhC--CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC---CccCCCCCCCHHHHHHHh
Confidence                344667777778876  667888888888888876533  22222 444466654   45566788888888764 


Q ss_pred             -------------cCCHHHHHHHHHCC-CC---CCCCchHHHHH----HHCCCHHHHHHHHhcC----------------
Q 014994          215 -------------SDDVELLKLLLDVS-NV---TLDDAYALHYA----AACCSPKVFKEVLNMD----------------  257 (415)
Q Consensus       215 -------------~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A----~~~g~~~~v~~Ll~~~----------------  257 (415)
                                   .++.+++++|+++| ++   |..|+||||.+    ...++.++++.|+...                
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~  442 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIR  442 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhc
Confidence                         36788888888888 43   56788888832    2245667777666531                


Q ss_pred             --------------------------------------------CCCccccCCCCChHHHHHHHcCCH-----HHHHHHH
Q 014994          258 --------------------------------------------SAGLNLKDARGRTVLHVAARRNEP-----EVMVTLL  288 (415)
Q Consensus       258 --------------------------------------------gadvn~~d~~g~TpLh~A~~~~~~-----~~v~~Ll  288 (415)
                                                                  ++++|..|..|+||||+|+..|+.     +++++||
T Consensus       443 ~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL  522 (764)
T PHA02716        443 VDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLL  522 (764)
T ss_pred             cCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHH
Confidence                                                        123455677888999998888776     4458899


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCc-----chHHHHHhcCCCcc
Q 014994          289 SKGARASETTSDGQTAVAICRRMTRR-----KDYIEASKQGQETN  328 (415)
Q Consensus       289 ~~Gadin~~d~~g~tpL~~A~~~~~~-----~~v~~l~~~g~~~~  328 (415)
                      +.|||+|.+|.+|+||||+|+..|+.     ++|+.|++.|+++.
T Consensus       523 ~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        523 SIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             hCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence            99999999999999999999988865     88888988887764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-31  Score=275.95  Aligned_cols=220  Identities=14%  Similarity=0.099  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      ..++++.|+..|+.+++++|++.|+++|.+  |..|.||||+|+..|+.++|++|++.  +++++..+..|.||||+|..
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~--d~~G~TpLh~Aa~~G~~~iv~~LL~~--Gad~n~~~~~g~t~L~~A~~  220 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGGADVNAK--DIYCITPIHYAAERGNAKMVNLLLSY--GADVNIIALDDLSVLECAVD  220 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCccCCCCCCHHHHHHH
Confidence            345666677777777777777777777765  66677777777777777777777766  55666666666666666644


Q ss_pred             HHhhhhhh------------------------------ccccccCccCCCCCCccccHHHHHHHhcCCH-HHHHHHHHCC
Q 014994          180 IKSLRVKS------------------------------NQESEANIAEVDPMHAKIVRRIHKALHSDDV-ELLKLLLDVS  228 (415)
Q Consensus       180 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g  228 (415)
                      .++..+..                              +.+.|+   .++..+..|.||||+|+..|+. +++++|++.|
T Consensus       221 ~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~---~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~g  297 (682)
T PHA02876        221 SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGF---SVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG  297 (682)
T ss_pred             cCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCC
Confidence            43332211                              111111   2333444566666666666554 3556666665


Q ss_pred             -CC---CCCCchHHHHHHHCC-CHHHHHHHHhcCCCCccccCCCCChHHHHHHHc-CCHHHHHHHHhCCCCCCCCCCCCC
Q 014994          229 -NV---TLDDAYALHYAAACC-SPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR-NEPEVMVTLLSKGARASETTSDGQ  302 (415)
Q Consensus       229 -~~---~~~g~tpL~~A~~~g-~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~-~~~~~v~~Ll~~Gadin~~d~~g~  302 (415)
                       ++   |..|.||||+|+..| +.++++.|+.. |+++|..|..|+||||+|+.. ++.+++++|++.|+++|.+|..|.
T Consensus       298 adin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~  376 (682)
T PHA02876        298 ADVNAKNIKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK  376 (682)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCC
Confidence             32   345566666666655 35555555543 555555555555555555543 345555555555555555555555


Q ss_pred             cHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          303 TAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       303 tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      ||||+|+..|+.++++.|++.|+++
T Consensus       377 TpLh~Aa~~~~~~iv~~Ll~~gad~  401 (682)
T PHA02876        377 TPIHYAAVRNNVVIINTLLDYGADI  401 (682)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            5555555555555555555555444

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.9e-32  Score=276.71  Aligned_cols=223  Identities=12%  Similarity=0.053  Sum_probs=182.3

Q ss_pred             hhhHHHHHHHHH--cCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCc--HHHHHHHHHhhcCCCCCccccCCCCh
Q 014994           98 NYVIELMYASAA--LQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQL--NMLRSYCIQRIAGSNLDNFCLERELP  173 (415)
Q Consensus        98 ~~~~~~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~--~~lv~~ll~~~~~~~~~~~~~~g~tp  173 (415)
                      ..+.||||+|+.  +++.+++++|++.|++++.+  |..|.||||+|+..|+  .++|++|++.  |++++.++..|.||
T Consensus       175 ~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k--D~~G~TPLH~Aa~~g~~~~eIVklLLe~--GADVN~kD~~G~TP  250 (764)
T PHA02716        175 KTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ--NNHLITPLHTYLITGNVCASVIKKIIEL--GGDMDMKCVNGMSP  250 (764)
T ss_pred             CCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCCCHHHHHHHHHc--CCCCCCCCCCCCCH
Confidence            346789998864  46789999999999999997  9999999999999996  5999999998  88999999999999


Q ss_pred             HHHHHHH-------------------------------------Hhhh-hhhccccccCccCCCCCCccccHHHHHHHh-
Q 014994          174 DEVSSEI-------------------------------------KSLR-VKSNQESEANIAEVDPMHAKIVRRIHKALH-  214 (415)
Q Consensus       174 l~~a~~~-------------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-  214 (415)
                      ||.|...                                     +... +..++..|++   ++.+|..|+||||+|+. 
T Consensus       251 Lh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd---IN~kD~~G~TPLH~Aaa~  327 (764)
T PHA02716        251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK---LHYKDSAGRTCLHQYILR  327 (764)
T ss_pred             HHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc---eeccCCCCCCHHHHHHHH
Confidence            9986321                                     0111 1333455544   56677899999999864 


Q ss_pred             -cCCHHHHHHHHHCC-CC---CCCCchHHHHHHH--------------CCCHHHHHHHHhcCCCCccccCCCCChHHHHH
Q 014994          215 -SDDVELLKLLLDVS-NV---TLDDAYALHYAAA--------------CCSPKVFKEVLNMDSAGLNLKDARGRTVLHVA  275 (415)
Q Consensus       215 -~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~--------------~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A  275 (415)
                       .++.+++++|+++| ++   |..|+||||+|+.              .++.++++.|++. |+|++.+|..|+||||.|
T Consensus       328 ~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~-GADIn~kn~~G~TPLh~y  406 (764)
T PHA02716        328 HNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL-GADITAVNCLGYTPLTSY  406 (764)
T ss_pred             hCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC-CCCCCCcCCCCCChHHHH
Confidence             46899999999999 44   6789999999875              3688999999986 999999999999999942


Q ss_pred             ----HHcCCHHHHHHHHhCCC-----------------------------------------------------------
Q 014994          276 ----ARRNEPEVMVTLLSKGA-----------------------------------------------------------  292 (415)
Q Consensus       276 ----~~~~~~~~v~~Ll~~Ga-----------------------------------------------------------  292 (415)
                          ...++.+++++|++.|+                                                           
T Consensus       407 ~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~  486 (764)
T PHA02716        407 ICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIE  486 (764)
T ss_pred             HHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHh
Confidence                23467889998887653                                                           


Q ss_pred             --CCCCCCCCCCcHHHHHHHcCCcchH-----HHHHhcCCCcc
Q 014994          293 --RASETTSDGQTAVAICRRMTRRKDY-----IEASKQGQETN  328 (415)
Q Consensus       293 --din~~d~~g~tpL~~A~~~~~~~~v-----~~l~~~g~~~~  328 (415)
                        ++|..|..|+||||+|+..|+...+     ++|++.|++++
T Consensus       487 ~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN  529 (764)
T PHA02716        487 RYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNIN  529 (764)
T ss_pred             hccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCc
Confidence              3455678899999999999987655     99999999886

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-33  Score=224.04  Aligned_cols=191  Identities=21%  Similarity=0.160  Sum_probs=165.8

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCcccc-CCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHH
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCL-ERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAL  213 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~-~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  213 (415)
                      +.++.+.++......-++.+++...+ .++.++. +|+||||+|+..++..+..++..-.+ ..+|.+|..|+||||.|+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~k-SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~n-v~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPK-SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPN-VKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChh-hhhccccccCCceeeeeeecCchhHHHHHHhcCC-CCCCCccccCCchhhhhh
Confidence            45677778887777778888876433 5565555 99999999998888887555533222 345667899999999999


Q ss_pred             hcCCHHHHHHHHHC-C-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014994          214 HSDDVELLKLLLDV-S-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLL  288 (415)
Q Consensus       214 ~~g~~~~v~~Ll~~-g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll  288 (415)
                      ..|+.++|+.|+.. | ++   +..|.|+||||+..|..+++++|++. |+.++.+|..|.||||-|+.-|..+++++|+
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~-ga~i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK-GALIRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc-CCCCcccccccCchhHHHHhccchhhHHHHH
Confidence            99999999999999 5 55   46899999999999999999999996 8999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          289 SKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       289 ~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ..||.+|.+|..|+||||.|..-|+.+...+|..+|++..
T Consensus       160 ~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  160 SQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTD  199 (226)
T ss_pred             hcCCCCCcccccCccHHHHHHhccCchHHHHHHHhcccee
Confidence            9999999999999999999988999999999999998864

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-31  Score=276.06  Aligned_cols=220  Identities=19%  Similarity=0.101  Sum_probs=182.1

Q ss_pred             hhHHHHHHHHHcCcH-HHHHHHHHhCCCcccccccCCChhHHHHHHHcC-cHHHHHHHHHhhcCCCCCccccCCCChHHH
Q 014994           99 YVIELMYASAALQMK-DRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQ-LNMLRSYCIQRIAGSNLDNFCLERELPDEV  176 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g-~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~  176 (415)
                      .+.||||+|+..|.. +++++|++.|++++.+  |.+|.||||+|+..| +.++++.|+..  +++++..+..|.||||+
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~--d~~g~TpLh~Aa~~g~~~~~v~~Ll~~--gadin~~d~~g~TpLh~  347 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAK--NIKGETPLYLMAKNGYDTENIRTLIML--GADVNAADRLYITPLHQ  347 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCCHHHHHHHHHc--CCCCCCcccCCCcHHHH
Confidence            467899999998875 6888999999999886  888999999999999 48899999988  77888899999999999


Q ss_pred             HHHHHh-hhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCH-HH
Q 014994          177 SSEIKS-LRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSP-KV  249 (415)
Q Consensus       177 a~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~-~~  249 (415)
                      |+.... ..+ ..++..|++   ++.+|..|.||||+|+..|+.+++++|+++| ++   +..|.||||+|+..++. .+
T Consensus       348 A~~~~~~~~iv~lLl~~gad---in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~  424 (682)
T PHA02876        348 ASTLDRNKDIVITLLELGAN---VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMS  424 (682)
T ss_pred             HHHhCCcHHHHHHHHHcCCC---CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHH
Confidence            976532 222 334466655   4556678999999999999999999999998 43   56788999999877664 56


Q ss_pred             HHHHHhcCCCCccccCCCCChHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          250 FKEVLNMDSAGLNLKDARGRTVLHVAARRN-EPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       250 v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~-~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ++.|++. |+++|.+|..|+||||+|+..| +.+++++|+++|||+|.+|..|.|||++|+..+  ..++.|+..|+...
T Consensus       425 vk~Ll~~-gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~  501 (682)
T PHA02876        425 VKTLIDR-GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELR  501 (682)
T ss_pred             HHHHHhC-CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCC
Confidence            7777775 8999999999999999999876 689999999999999999999999999998754  57889999888764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.8e-32  Score=269.37  Aligned_cols=214  Identities=16%  Similarity=0.144  Sum_probs=160.6

Q ss_pred             HHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHc-----CcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH-
Q 014994          108 AALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHC-----QLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIK-  181 (415)
Q Consensus       108 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~-----g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~-  181 (415)
                      ...+..++|++|+++|+++|.+  +..|.||||.|+.+     ++.+++++|++.  |+++|..+..|.||||+|+... 
T Consensus        46 ~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~--GadiN~~d~~G~TpLh~a~~~~~  121 (489)
T PHA02798         46 RDSPSTDIVKLFINLGANVNGL--DNEYSTPLCTILSNIKDYKHMLDIVKILIEN--GADINKKNSDGETPLYCLLSNGY  121 (489)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCC--CCCCCChHHHHHHhHHhHHhHHHHHHHHHHC--CCCCCCCCCCcCcHHHHHHHcCC
Confidence            3345677777777777777775  77777777777654     557777777776  6677777777777777776542 


Q ss_pred             --hhhh-hhccccccCccCCCCCCccccHHHHHHHhcCC---HHHHHHHHHCC-CCC----CCCchHHHHHHHC----CC
Q 014994          182 --SLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDD---VELLKLLLDVS-NVT----LDDAYALHYAAAC----CS  246 (415)
Q Consensus       182 --~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~----g~  246 (415)
                        ...+ ..+++.|+++   +..|..|.||||+|+..|+   .+++++|++.| +++    ..|.||||.++..    ++
T Consensus       122 ~~~~~iv~~Ll~~Gadv---n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~  198 (489)
T PHA02798        122 INNLEILLFMIENGADT---TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRID  198 (489)
T ss_pred             cChHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCC
Confidence              2222 3344556554   3445677777777777776   77777777777 543    3466777776653    35


Q ss_pred             HHHHHHHHhc--------------------------------------CCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014994          247 PKVFKEVLNM--------------------------------------DSAGLNLKDARGRTVLHVAARRNEPEVMVTLL  288 (415)
Q Consensus       247 ~~~v~~Ll~~--------------------------------------~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll  288 (415)
                      .+++++|++.                                      .|+|+|.+|..|+||||+|+..|+.+++++||
T Consensus       199 ~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL  278 (489)
T PHA02798        199 ADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLL  278 (489)
T ss_pred             HHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHH
Confidence            5666666543                                      03567778889999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          289 SKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       289 ~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ++|||+|.+|..|+||||+|+..++..+++.+++.|.++.
T Consensus       279 ~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        279 QLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            9999999999999999999999999999999999998875

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-31  Score=266.34  Aligned_cols=220  Identities=16%  Similarity=0.082  Sum_probs=183.0

Q ss_pred             hHHHHHHHHHc------CcHHHHHHHHHhCCCcccccccCCChhHHHHHHHc---CcHHHHHHHHHhhcCCCC-CccccC
Q 014994          100 VIELMYASAAL------QMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHC---QLNMLRSYCIQRIAGSNL-DNFCLE  169 (415)
Q Consensus       100 ~~~~L~~A~~~------g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~---g~~~lv~~ll~~~~~~~~-~~~~~~  169 (415)
                      ..||||.|+..      +..+++++|+++|+++|.+  +..|.||||.|+..   |+.+++++|++.  |+++ +..+..
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~--Gadin~~~d~~  144 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLK--TFNGVSPIVCFIYNSNINNCDMLRFLLSK--GINVNDVKNSR  144 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHhcccCcHHHHHHHHHC--CCCcccccCCC
Confidence            45789988764      4578999999999999987  88999999988766   568999999998  7788 788999


Q ss_pred             CCChHHHHHHHH--hhh-hhhccccccCccCCCCCCccccHHHHHHHhc----CCHHHHHHHHHCC-CCC---CCCchHH
Q 014994          170 RELPDEVSSEIK--SLR-VKSNQESEANIAEVDPMHAKIVRRIHKALHS----DDVELLKLLLDVS-NVT---LDDAYAL  238 (415)
Q Consensus       170 g~tpl~~a~~~~--~~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~----g~~~~v~~Ll~~g-~~~---~~g~tpL  238 (415)
                      |.||||+|....  ... +..+++.|+++...  .+..|.||||.|+..    ++.+++++|+++| +++   ..+.|||
T Consensus       145 g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~--~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l  222 (494)
T PHA02989        145 GYNLLHMYLESFSVKKDVIKILLSFGVNLFEK--TSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVL  222 (494)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcCCCcccc--ccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHH
Confidence            999999986542  333 35556778776542  356899999998765    4899999999999 554   4578999


Q ss_pred             HHHHHCC------CHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 014994          239 HYAAACC------SPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       239 ~~A~~~g------~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~  312 (415)
                      |.++..+      ..+++.+|+.  |+++|.+|..|+||||+|+..|+.+++++||++|||+|.+|..|.||||+|+..|
T Consensus       223 ~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        223 ESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHG  300 (494)
T ss_pred             HHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            9877543      4566666553  6999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHhcCCCc
Q 014994          313 RRKDYIEASKQGQET  327 (415)
Q Consensus       313 ~~~~v~~l~~~g~~~  327 (415)
                      +.++++.|++.+...
T Consensus       301 ~~~iv~~LL~~~p~~  315 (494)
T PHA02989        301 NIDMLNRILQLKPGK  315 (494)
T ss_pred             CHHHHHHHHhcCCCh
Confidence            999999999987543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=3e-31  Score=257.73  Aligned_cols=225  Identities=17%  Similarity=0.136  Sum_probs=197.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      ...+|+|+|+..|..+.++.|+++|+|+|..  |+.|.||||+|+..++.|..+.|++.  ++++...|..|.+|+|.|+
T Consensus       120 ~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~--de~~~TpLh~A~~~~~~E~~k~Li~~--~a~~~K~~~~~~~~iH~aa  195 (929)
T KOG0510|consen  120 NKNAPLHLAADSGNYSCLKLLLDYGADVNLE--DENGFTPLHLAARKNKVEAKKELINK--GADPCKSDIDGNFPIHEAA  195 (929)
T ss_pred             hccCchhhccccchHHHHHHHHHhcCCcccc--ccCCCchhhHHHhcChHHHHHHHHhc--CCCCCcccCcCCchHHHHH
Confidence            3567899999999999999999999999986  99999999999999999988888887  7788888999999999998


Q ss_pred             HHHhhhh-hhcc-ccc-cCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C------------------CCCCCch
Q 014994          179 EIKSLRV-KSNQ-ESE-ANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N------------------VTLDDAY  236 (415)
Q Consensus       179 ~~~~~~~-~~~~-~~~-~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~------------------~~~~g~t  236 (415)
                      ..++... ...+ .+| .....+|..+..|.||||.|+..|++++++.+|+.| .                  .|.+|.|
T Consensus       196 ~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~t  275 (929)
T KOG0510|consen  196 RSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCT  275 (929)
T ss_pred             HhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCc
Confidence            7776655 2222 222 123456666679999999999999999999999998 1                  2578999


Q ss_pred             HHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh-C-CCCCCCCCCCCCcHHHHHHHcCCc
Q 014994          237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS-K-GARASETTSDGQTAVAICRRMTRR  314 (415)
Q Consensus       237 pL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~-Gadin~~d~~g~tpL~~A~~~~~~  314 (415)
                      |||+||..|+.+.+..|+.. |+++|.++.++.||||.||..|+.++|+.||+ . -...|..|..|.||||+|+..||.
T Consensus       276 pLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~  354 (929)
T KOG0510|consen  276 PLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHD  354 (929)
T ss_pred             hHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHH
Confidence            99999999999999999986 99999999999999999999999999999999 4 356889999999999999999999


Q ss_pred             chHHHHHhcCCCcc
Q 014994          315 KDYIEASKQGQETN  328 (415)
Q Consensus       315 ~~v~~l~~~g~~~~  328 (415)
                      .++++|++.|+.-.
T Consensus       355 ~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  355 RVVQLLLNKGALFL  368 (929)
T ss_pred             HHHHHHHhcChhhh
Confidence            99999999998765

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=254.84  Aligned_cols=205  Identities=17%  Similarity=0.115  Sum_probs=180.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCC-CccccCCCChHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNL-DNFCLERELPDEVS  177 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~-~~~~~~g~tpl~~a  177 (415)
                      .+.||||+|+..|+.+++++|++.|++++.+  +.++.||||.|+..|+.+++++|++.  +... +..+..|.||||+|
T Consensus        34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~tpL~~A  109 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEEGDVKAVEELLDL--GKFADDVFYKDGMTPLHLA  109 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHCCCHHHHHHHHHc--CCcccccccCCCCCHHHHH
Confidence            3678999999999999999999999999885  78899999999999999999999997  4333 34567899999999


Q ss_pred             HHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHH
Q 014994          178 SEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKE  252 (415)
Q Consensus       178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~  252 (415)
                      +..+...+ ..+++.|+++..   .+..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++
T Consensus       110 ~~~~~~~iv~~Ll~~gad~~~---~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~  186 (413)
T PHA02875        110 TILKKLDIMKLLIARGADPDI---PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKM  186 (413)
T ss_pred             HHhCCHHHHHHHHhCCCCCCC---CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99888877 445577876654   5568999999999999999999999999 44   5789999999999999999999


Q ss_pred             HHhcCCCCccccCCCC-ChHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCCcHHHHHHHc
Q 014994          253 VLNMDSAGLNLKDARG-RTVLHVAARRNEPEVMVTLLSKGARASET---TSDGQTAVAICRRM  311 (415)
Q Consensus       253 Ll~~~gadvn~~d~~g-~TpLh~A~~~~~~~~v~~Ll~~Gadin~~---d~~g~tpL~~A~~~  311 (415)
                      |++. |+++|..+..| .||+|+|+..|+.+++++|+++|||+|..   +..|.|||+.+...
T Consensus       187 Ll~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        187 LLDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             HHhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Confidence            9996 99999999887 58999999999999999999999999976   57789999987654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.1e-30  Score=254.85  Aligned_cols=212  Identities=14%  Similarity=0.050  Sum_probs=171.0

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHH------------------------------
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNM------------------------------  149 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~------------------------------  149 (415)
                      +.||||+|+..|+.+++++|++.+.+...    ..+.+||+.|+..++.+                              
T Consensus        70 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  145 (477)
T PHA02878         70 DLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDII  145 (477)
T ss_pred             CCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhH
Confidence            55777777777777777777776554432    35567777777776655                              


Q ss_pred             ---HHHHHHHhhcCCCCCccccC-CCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHH
Q 014994          150 ---LRSYCIQRIAGSNLDNFCLE-RELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLL  224 (415)
Q Consensus       150 ---lv~~ll~~~~~~~~~~~~~~-g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  224 (415)
                         ++++|++.  +++++..+.. |.||||+|+..+...+ ..++..|+++   +..|..|.||||.|+..|+.+++++|
T Consensus       146 ~~~iv~~Ll~~--gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~---n~~d~~g~tpLh~A~~~~~~~iv~~L  220 (477)
T PHA02878        146 EAEITKLLLSY--GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV---NIPDKTNNSPLHHAVKHYNKPIVHIL  220 (477)
T ss_pred             HHHHHHHHHHc--CCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence               44555554  7788888888 9999999998888776 4445777664   45667999999999999999999999


Q ss_pred             HHCC-CC---CCCCchHHHHHHHC-CCHHHHHHHHhcCCCCccccCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 014994          225 LDVS-NV---TLDDAYALHYAAAC-CSPKVFKEVLNMDSAGLNLKDA-RGRTVLHVAARRNEPEVMVTLLSKGARASETT  298 (415)
Q Consensus       225 l~~g-~~---~~~g~tpL~~A~~~-g~~~~v~~Ll~~~gadvn~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d  298 (415)
                      ++.| ++   |..|.||||+|+.. ++.++++.|++. |+++|.++. .|+||||+|  .++.+++++|+++|||+|.+|
T Consensus       221 l~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~-gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d  297 (477)
T PHA02878        221 LENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH-GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLN  297 (477)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcC
Confidence            9999 44   57899999999975 689999999986 999999986 899999999  578899999999999999999


Q ss_pred             CCCCcHHHHHHHcC-CcchHHHHHhc
Q 014994          299 SDGQTAVAICRRMT-RRKDYIEASKQ  323 (415)
Q Consensus       299 ~~g~tpL~~A~~~~-~~~~v~~l~~~  323 (415)
                      ..|.||||+|+..+ ...+++.++..
T Consensus       298 ~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        298 SYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             CCCCCHHHHHHHHcCccchHHHHHHH
Confidence            99999999999854 34556666544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=7.1e-31  Score=250.59  Aligned_cols=207  Identities=17%  Similarity=0.155  Sum_probs=186.2

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHHHh-CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccc-cCCCChH
Q 014994           97 VNYVIELMYASAALQMKDRVFLLQHW-LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFC-LERELPD  174 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~-~~g~tpl  174 (415)
                      .+....-++.|++.|..+-|+.|++. |.+++..  |.+|.|+||+|+.+++.+++++|+++  ++++|... ..+.|||
T Consensus        41 ~d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~--D~~g~tlLHWAAiNNrl~v~r~li~~--gadvn~~gG~l~stPL  116 (600)
T KOG0509|consen   41 EDSSLDDIVKATQYGELETVKELVESEGESVNNP--DREGVTLLHWAAINNRLDVARYLISH--GADVNAIGGVLGSTPL  116 (600)
T ss_pred             cchhhhhhhhHhhcchHHHHHHHHhhcCcCCCCC--CcCCccceeHHHHcCcHHHHHHHHHc--CCCccccCCCCCCCcc
Confidence            44556678999999999999999998 9999997  89999999999999999999999999  88999888 7889999


Q ss_pred             HHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHH
Q 014994          175 EVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKV  249 (415)
Q Consensus       175 ~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~  249 (415)
                      |+|+..+++.+ ..++.+||++...|   .+|.||||.|+..|+.-+|-+||.+| ++   |.+|+||||+|+..|+...
T Consensus       117 HWAar~G~~~vv~lLlqhGAdpt~~D---~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~  193 (600)
T KOG0509|consen  117 HWAARNGHISVVDLLLQHGADPTLKD---KQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF  193 (600)
T ss_pred             hHHHHcCcHHHHHHHHHcCCCCceec---CCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH
Confidence            99999999988 44558898877655   69999999999999999999999999 54   5789999999999999888


Q ss_pred             HHHHHhcCCCCccccC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 014994          250 FKEVLNMDSAGLNLKD-ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM  311 (415)
Q Consensus       250 v~~Ll~~~gadvn~~d-~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~  311 (415)
                      +..||.- |++++..| ..|.||||+|+..|+..++.+|++.|++.+.+|.+|.||+++|...
T Consensus       194 v~~LL~f-~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  194 VRRLLKF-GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHh-cccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            8888885 89999998 8999999999999999999988888899999999999999999776

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=253.65  Aligned_cols=220  Identities=14%  Similarity=0.101  Sum_probs=183.0

Q ss_pred             hHHHHHHHHH-c-CcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcC------cHHHHHHHHHhhcCCCCCccccCCC
Q 014994          100 VIELMYASAA-L-QMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQ------LNMLRSYCIQRIAGSNLDNFCLERE  171 (415)
Q Consensus       100 ~~~~L~~A~~-~-g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g------~~~lv~~ll~~~~~~~~~~~~~~g~  171 (415)
                      +.++||.++. . ++.++|++|+++|+++|.+  + .+.||||.|+.++      +.+++++|++.  |++++.++..|.
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~--~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~  109 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDNGADVNYK--G-YIETPLCAVLRNREITSNKIKKIVKLLLKF--GADINLKTFNGV  109 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHcCCCccCC--C-CCCCcHHHHHhccCcchhhHHHHHHHHHHC--CCCCCCCCCCCC
Confidence            4466655443 3 4799999999999999985  3 6799999998765      47899999998  889999999999


Q ss_pred             ChHHHHHHH---Hhhhh-hhccccccCccCCCCCCccccHHHHHHHhc--CCHHHHHHHHHCC-CC----CCCCchHHHH
Q 014994          172 LPDEVSSEI---KSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHS--DDVELLKLLLDVS-NV----TLDDAYALHY  240 (415)
Q Consensus       172 tpl~~a~~~---~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~g-~~----~~~g~tpL~~  240 (415)
                      |||+.|...   +...+ ..+++.|++++  +..|..|.||||+|+..  ++.++|++|+++| ++    +..|.||||+
T Consensus       110 tpL~~a~~~~~~~~~eiv~~Ll~~Gadin--~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~  187 (494)
T PHA02989        110 SPIVCFIYNSNINNCDMLRFLLSKGINVN--DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNI  187 (494)
T ss_pred             cHHHHHHHhcccCcHHHHHHHHHCCCCcc--cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHH
Confidence            999988654   33333 55667887762  34557899999998764  6899999999999 54    4579999999


Q ss_pred             HHHCC----CHHHHHHHHhcCCCCccccCCCCChHHHHHHHc------CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 014994          241 AAACC----SPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR------NEPEVMVTLLSKGARASETTSDGQTAVAICRR  310 (415)
Q Consensus       241 A~~~g----~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~------~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~  310 (415)
                      |+..+    +.+++++|++. |+++|.+|..|.||||.++..      +..+++++|++ |+++|.+|..|+||||+|+.
T Consensus       188 a~~~~~~~~~~~iv~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~  265 (494)
T PHA02989        188 YLRNDIDVISIKVIKYLIKK-GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAK  265 (494)
T ss_pred             HHhcccccccHHHHHHHHhC-CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHH
Confidence            98764    89999999996 999999999999999987754      35678887665 79999999999999999999


Q ss_pred             cCCcchHHHHHhcCCCcc
Q 014994          311 MTRRKDYIEASKQGQETN  328 (415)
Q Consensus       311 ~~~~~~v~~l~~~g~~~~  328 (415)
                      .|+.++++.|++.|++++
T Consensus       266 ~~~~~~v~~LL~~Gadin  283 (494)
T PHA02989        266 VDNYEAFNYLLKLGDDIY  283 (494)
T ss_pred             hcCHHHHHHHHHcCCCcc
Confidence            999999999999999886

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=251.10  Aligned_cols=231  Identities=13%  Similarity=0.032  Sum_probs=176.5

Q ss_pred             hhhHHHHHHHHHcC---cHHHHHHHHHhCCCcccccccCCChhHHHHHHHcC--cHHHHHHHHHhhcCCCCCccccCCCC
Q 014994           98 NYVIELMYASAALQ---MKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQ--LNMLRSYCIQRIAGSNLDNFCLEREL  172 (415)
Q Consensus        98 ~~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~lv~~ll~~~~~~~~~~~~~~g~t  172 (415)
                      ..+.||||+|+..|   +.++|++|+++|++++.+  |..|.||||+|+..+  +.+++++|++.+++++.+..+..+.+
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~k--D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~  116 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCR--NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDF  116 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCccc--CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCc
Confidence            45789999999997   599999999999999997  999999999999977  79999999999776666766766777


Q ss_pred             hHHHHHH-------H----------------------------------Hhhhh-hhccccccCcc--------------
Q 014994          173 PDEVSSE-------I----------------------------------KSLRV-KSNQESEANIA--------------  196 (415)
Q Consensus       173 pl~~a~~-------~----------------------------------~~~~~-~~~~~~~~~~~--------------  196 (415)
                      ||+.+..       .                                  +...+ +++++.|+++.              
T Consensus       117 ~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c  196 (672)
T PHA02730        117 DLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRC  196 (672)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCcc
Confidence            7766633       1                                  11111 12223444431              


Q ss_pred             ------------------------------CCCCCCccccHHHHH--HHhcCCHHHHHHHHH------------------
Q 014994          197 ------------------------------EVDPMHAKIVRRIHK--ALHSDDVELLKLLLD------------------  226 (415)
Q Consensus       197 ------------------------------~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~------------------  226 (415)
                                                    .+|.+|..|.||||+  |+..|+.|+|++|++                  
T Consensus       197 ~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~  276 (672)
T PHA02730        197 KNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRG  276 (672)
T ss_pred             chhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhh
Confidence                                          167788899999984  555667888888888                  


Q ss_pred             --------------CC-C--C--------------------------C--------------------------------
Q 014994          227 --------------VS-N--V--------------------------T--------------------------------  231 (415)
Q Consensus       227 --------------~g-~--~--------------------------~--------------------------------  231 (415)
                                    +| +  +                          +                                
T Consensus       277 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~  356 (672)
T PHA02730        277 VLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDM  356 (672)
T ss_pred             hHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCc
Confidence                          33 1  1                          1                                


Q ss_pred             -------------------CCCchHHHHHHHCCC----HHHHHHHHhcCCC--CccccCCCCChHHHH---HHHcC----
Q 014994          232 -------------------LDDAYALHYAAACCS----PKVFKEVLNMDSA--GLNLKDARGRTVLHV---AARRN----  279 (415)
Q Consensus       232 -------------------~~g~tpL~~A~~~g~----~~~v~~Ll~~~ga--dvn~~d~~g~TpLh~---A~~~~----  279 (415)
                                         ..|.||||+|+..++    .++++.|++. |+  |+|.+|..|.||||.   |...+    
T Consensus       357 v~ieIvelLIs~GAdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~-Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~  435 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVEN-NGHMAINHVSNNGRLCMYGLILSRFNNCGYH  435 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHc-CCCccccccccCCCchHhHHHHHHhcccccc
Confidence                               236789998888774    7999999985 66  688889999999984   33232    


Q ss_pred             -----CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccccc
Q 014994          280 -----EPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDR  331 (415)
Q Consensus       280 -----~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~~~  331 (415)
                           ..+++++|+++|||+|.+|..|.||||+|+..++.++++.|++.|++++...
T Consensus       436 ~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d  492 (672)
T PHA02730        436 CYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS  492 (672)
T ss_pred             ccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence                 2356899999999999999999999999999999999999999999886433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=8.6e-29  Score=234.99  Aligned_cols=196  Identities=12%  Similarity=0.058  Sum_probs=143.6

Q ss_pred             HHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCC------ccccCCCChHHHHHH--HHhhhh-hhc
Q 014994          118 LLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLD------NFCLERELPDEVSSE--IKSLRV-KSN  188 (415)
Q Consensus       118 ~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~------~~~~~g~tpl~~a~~--~~~~~~-~~~  188 (415)
                      +++.+|+++|.+  +.+|     +|+..+..+++++|+..  +++++      ..+..++|+||.+..  .++..+ ..+
T Consensus        67 ~~~~~~~~i~~~--~~~~-----~~~~~~~k~~~~~l~s~--~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         67 YFRIHRDNIDQY--IVDR-----LFAYITYKDIISALVSK--NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             HHHHcCcchhhh--hhhh-----HHhhcchHHHHHHHHhc--ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            444455555444  2222     44444445555555544  33333      344444555554444  333333 222


Q ss_pred             cccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC---------CCCchHHHHHHHCCCHHHHHHHHhcCC
Q 014994          189 QESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT---------LDDAYALHYAAACCSPKVFKEVLNMDS  258 (415)
Q Consensus       189 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~---------~~g~tpL~~A~~~g~~~~v~~Ll~~~g  258 (415)
                      +++||++..     .++.||||+|+..|+.+++++|+++| +.+         ..+.||+|.|+..++.++++.|+.. |
T Consensus       138 I~~GADIn~-----~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~-G  211 (437)
T PHA02795        138 VDHGAVIYK-----IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPY-I  211 (437)
T ss_pred             HHCCCCCCC-----CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhC-c
Confidence            344544433     23579999999999999999999999 321         2367899999999999999999985 9


Q ss_pred             CCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC--------cchHHHHHhcCCCcc
Q 014994          259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTR--------RKDYIEASKQGQETN  328 (415)
Q Consensus       259 advn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~--------~~~v~~l~~~g~~~~  328 (415)
                      +|+|.+|..|+||||+|+..|+.+++++|+++||++|.+|..|+||||+|+..|+        .+++++|++.|++..
T Consensus       212 ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        212 EDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999884        589999999998775

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=5.2e-30  Score=263.68  Aligned_cols=223  Identities=20%  Similarity=0.132  Sum_probs=174.7

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHH
Q 014994           97 VNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEV  176 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~  176 (415)
                      ...+.+++|+|+.+|..+.+++++..|++++.+  ...|.||||.|+.+++..+++.+++.  +++.+..+..|+||+|+
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~--gk~gvTplh~aa~~~~~~~v~l~l~~--gA~~~~~~~lG~T~lhv  446 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGADPNSA--GKNGVTPLHVAAHYGNPRVVKLLLKR--GASPNAKAKLGYTPLHV  446 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCCcccC--CCCCcceeeehhhccCcceEEEEecc--CCChhhHhhcCCChhhh
Confidence            345667788888888888888888888887775  77788888888888888888887776  66777778888888888


Q ss_pred             HHHHH-hhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC--------------------------
Q 014994          177 SSEIK-SLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS--------------------------  228 (415)
Q Consensus       177 a~~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--------------------------  228 (415)
                      |+..+ .... ......|++++.   ....|.||||.|+..|+.++++.|++.+                          
T Consensus       447 aa~~g~~~~~~~~l~~~g~~~n~---~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~  523 (1143)
T KOG4177|consen  447 AAKKGRYLQIARLLLQYGADPNA---VSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVA  523 (1143)
T ss_pred             hhhcccHhhhhhhHhhcCCCcch---hccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHH
Confidence            87665 3333 223344444433   3357777777777777777777777654                          


Q ss_pred             --------CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 014994          229 --------NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASET  297 (415)
Q Consensus       229 --------~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~  297 (415)
                              ++   +..|.||||.|+..|+..+|++||++ |+|++.+++.|+||||.||..|+.+|+.+|+++||++|..
T Consensus       524 ~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~  602 (1143)
T KOG4177|consen  524 KILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAA  602 (1143)
T ss_pred             HHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcc
Confidence                    11   24567899999999999999999985 8999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          298 TSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       298 d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      |.+|.|||++|++.|+..+++.+...|.++
T Consensus       603 d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  603 DLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             cccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            999999999999999999999999888884

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.9e-28  Score=215.21  Aligned_cols=170  Identities=14%  Similarity=0.143  Sum_probs=143.5

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcC--cHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994          101 IELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQ--LNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus       101 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .+|||+|+..|+.++|+.|++.   ++..  +..|.||||+|+..+  +.+++++|++.  +++++..+.          
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~---~n~~--~~~g~TpLh~a~~~~~~~~eiv~~Ll~~--gadvn~~~~----------   84 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKF---VNDC--NDLYETPIFSCLEKDKVNVEILKFLIEN--GADVNFKTR----------   84 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHh---hhcc--CccCCCHHHHHHHcCCCCHHHHHHHHHC--CCCCCccCC----------
Confidence            4789999999999999999876   3443  788999999999865  79999999997  544443321          


Q ss_pred             HHHhhhhhhccccccCccCCCCCCccccHHHHHHHhc---CCHHHHHHHHHCC-CC---CCCCchHHHHHHH--CCCHHH
Q 014994          179 EIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHS---DDVELLKLLLDVS-NV---TLDDAYALHYAAA--CCSPKV  249 (415)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~--~g~~~~  249 (415)
                                              ..|.||||+|+..   ++.+++++|+++| ++   |..|.||||+|+.  .++.++
T Consensus        85 ------------------------~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~i  140 (209)
T PHA02859         85 ------------------------DNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINV  140 (209)
T ss_pred             ------------------------CCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHH
Confidence                                    2577777777653   4789999999999 54   5789999999886  468999


Q ss_pred             HHHHHhcCCCCccccCCCCChHHHH-HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 014994          250 FKEVLNMDSAGLNLKDARGRTVLHV-AARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       250 v~~Ll~~~gadvn~~d~~g~TpLh~-A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~  312 (415)
                      +++|+.. |++++.+|..|.||||. |+..++.+++++|+++|++++.+|..|+||||+|...+
T Consensus       141 v~~Li~~-gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        141 IKLLIDS-GVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHc-CCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999986 99999999999999995 56788999999999999999999999999999998753

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=1.4e-29  Score=260.49  Aligned_cols=291  Identities=17%  Similarity=0.101  Sum_probs=234.5

Q ss_pred             cchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcccccCCCC
Q 014994            9 NQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDAC   88 (415)
Q Consensus         9 ~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~~~~~~~c   88 (415)
                      .++|.|.|-.++..++.+-++..+-..-.+.-..+-.+....+.       ....+..+++++...+             
T Consensus       275 ~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~-------g~~~i~~~~l~~~~~~-------------  334 (1143)
T KOG4177|consen  275 GETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRL-------GHEEIVHLLLQAGATP-------------  334 (1143)
T ss_pred             ccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhccc-------chHHHHHHHhhccCCc-------------
Confidence            56999999999999999999987644423333222222222222       1334455565543322             


Q ss_pred             CCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCcccc
Q 014994           89 VHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCL  168 (415)
Q Consensus        89 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~  168 (415)
                           ......+.+++|+++..+..++..++...+..-...  ++.|.||+|+|+.+|..+.++.++..  +++++....
T Consensus       335 -----~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a--~~k~~~pl~la~~~g~~~~v~Lll~~--ga~~~~~gk  405 (1143)
T KOG4177|consen  335 -----NAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQA--EEKGFTPLHLAVKSGRVSVVELLLEA--GADPNSAGK  405 (1143)
T ss_pred             -----cccCcCCcccccHhhhhhhHHHHHHhhccccccCcc--cccCCcchhhhcccCchhHHHhhhhc--cCCcccCCC
Confidence                 111233678999999999999888888888777664  89999999999999999999999998  778999999


Q ss_pred             CCCChHHHHHHHHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcC-CHHHHHHHHHCC-CC---CCCCchHHHHHH
Q 014994          169 ERELPDEVSSEIKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSD-DVELLKLLLDVS-NV---TLDDAYALHYAA  242 (415)
Q Consensus       169 ~g~tpl~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g-~~---~~~g~tpL~~A~  242 (415)
                      .|.||||.++......+.. .+..|+++   +.++..|.||+|.|+..| ..+++..+++.| ++   ...|.||||.|+
T Consensus       406 ~gvTplh~aa~~~~~~~v~l~l~~gA~~---~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaa  482 (1143)
T KOG4177|consen  406 NGVTPLHVAAHYGNPRVVKLLLKRGASP---NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAA  482 (1143)
T ss_pred             CCcceeeehhhccCcceEEEEeccCCCh---hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhh
Confidence            9999999999888887744 44556554   456679999999999999 889999999998 54   468899999999


Q ss_pred             HCCCHHHHHHHHhc--------------------------------CCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 014994          243 ACCSPKVFKEVLNM--------------------------------DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK  290 (415)
Q Consensus       243 ~~g~~~~v~~Ll~~--------------------------------~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  290 (415)
                      ..|+.+++..|++.                                +|++++.++..|.||||+|+..|+..+|++||++
T Consensus       483 q~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~  562 (1143)
T KOG4177|consen  483 QEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH  562 (1143)
T ss_pred             ccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhC
Confidence            99887776666542                                2889999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccccc
Q 014994          291 GARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDR  331 (415)
Q Consensus       291 Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~~~  331 (415)
                      |||++.+++.|+||||.|+..|+.+++.+|+++|++++...
T Consensus       563 gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  563 GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc
Confidence            99999999999999999999999999999999999997443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.7e-28  Score=249.35  Aligned_cols=217  Identities=12%  Similarity=0.011  Sum_probs=174.3

Q ss_pred             hhHHHHHHHHHc---CcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCc----HHHHHHHHHhhcCCCCCccccCCC
Q 014994           99 YVIELMYASAAL---QMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQL----NMLRSYCIQRIAGSNLDNFCLERE  171 (415)
Q Consensus        99 ~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~----~~lv~~ll~~~~~~~~~~~~~~g~  171 (415)
                      .+.||||+|+..   |+.++|++|++.|++++.+  +..|.||||+|+..|+    .++++.|++...  ..+..+  ..
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~--~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~--~~n~~~--~~  104 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK--NWRQLTPLEEYTNSRHVKVNKDIAMALLEATG--YSNIND--FN  104 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc--CCCCCCHHHHHHHcCChhHHHHHHHHHHhccC--CCCCCC--cc
Confidence            467899997555   8899999999999999987  9999999999999998    456677776522  233323  23


Q ss_pred             ChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHH--HhcCCHHHHHHHHHCC-CCCC------CC-------
Q 014994          172 LPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKA--LHSDDVELLKLLLDVS-NVTL------DD-------  234 (415)
Q Consensus       172 tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~~g-~~~~------~g-------  234 (415)
                      +++++|+..++..+ +.+++.|++++   .+|.+|.||||.|  +..|+.++|++|+++| +++.      .|       
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin---~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~  181 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLS---VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQ  181 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCC---ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccc
Confidence            66677777766665 44557776554   5667999999965  4578999999999999 6642      23       


Q ss_pred             ----chHHHHHHH-----------CCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCH--HHHHHHHhCCCCCC--
Q 014994          235 ----AYALHYAAA-----------CCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEP--EVMVTLLSKGARAS--  295 (415)
Q Consensus       235 ----~tpL~~A~~-----------~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~--~~v~~Ll~~Gadin--  295 (415)
                          .||||+|+.           .++.++|++|+.. |+|+|.+|.+|+||||+|+.+|+.  ++|++|++ |++++  
T Consensus       182 ~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~  259 (661)
T PHA02917        182 PRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAY  259 (661)
T ss_pred             ccccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccc
Confidence                599999986           4689999999986 999999999999999999999985  79999985 99886  


Q ss_pred             --CCCCCCCcHHHHHHHcC---------CcchHHHHHhcCCC
Q 014994          296 --ETTSDGQTAVAICRRMT---------RRKDYIEASKQGQE  326 (415)
Q Consensus       296 --~~d~~g~tpL~~A~~~~---------~~~~v~~l~~~g~~  326 (415)
                        ..|..|.||+++|+..+         +.+++++|++.|++
T Consensus       260 ~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        260 SYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             ccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence              46678899999999532         56889999999975

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1e-27  Score=243.82  Aligned_cols=203  Identities=15%  Similarity=0.104  Sum_probs=165.8

Q ss_pred             HHHHHHHHHhCCCcccccccCCChhHHHHHHHc---CcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh----
Q 014994          113 KDRVFLLQHWLLGMVGKALVEDVLPILVAAFHC---QLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV----  185 (415)
Q Consensus       113 ~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~---g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~----  185 (415)
                      .+.++.|+..|..++.+  |.+|.||||+|+..   |+.+++++|++.  +++++..+..|.||||.|+..++..+    
T Consensus        12 ~~~~~~l~~~~~~~~~~--d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~--ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~   87 (661)
T PHA02917         12 LDELKQMLRDRDPNDTR--NQFKNNALHAYLFNEHCNNVEVVKLLLDS--GTNPLHKNWRQLTPLEEYTNSRHVKVNKDI   87 (661)
T ss_pred             HHHHHHHHhccCccccc--CCCCCcHHHHHHHhhhcCcHHHHHHHHHC--CCCccccCCCCCCHHHHHHHcCChhHHHHH
Confidence            56778888888888776  99999999997555   779999999998  78899999999999999987665322    


Q ss_pred             -hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC---CCCchHHHHHH--HCCCHHHHHHHHhcCC
Q 014994          186 -KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT---LDDAYALHYAA--ACCSPKVFKEVLNMDS  258 (415)
Q Consensus       186 -~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~---~~g~tpL~~A~--~~g~~~~v~~Ll~~~g  258 (415)
                       ..++..++. ..++    +..+++|+|+..|+.++|++|+++| ++|   ..|+||||+|+  ..|+.+++++||+. |
T Consensus        88 ~~~Ll~~~~~-~n~~----~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~-G  161 (661)
T PHA02917         88 AMALLEATGY-SNIN----DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN-G  161 (661)
T ss_pred             HHHHHhccCC-CCCC----CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc-C
Confidence             233333222 1222    2347788999999999999999999 664   58999999654  57899999999986 9


Q ss_pred             CCccccCC---CC-----------ChHHHHHHH-----------cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 014994          259 AGLNLKDA---RG-----------RTVLHVAAR-----------RNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTR  313 (415)
Q Consensus       259 advn~~d~---~g-----------~TpLh~A~~-----------~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~  313 (415)
                      +|+|..|.   .|           .||||+|+.           .++.++|++|+++|||+|.+|.+|.||||+|+..|+
T Consensus       162 a~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        162 CSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             CCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCC
Confidence            99987654   34           599999986           468999999999999999999999999999999998


Q ss_pred             c--chHHHHHhcCCC
Q 014994          314 R--KDYIEASKQGQE  326 (415)
Q Consensus       314 ~--~~v~~l~~~g~~  326 (415)
                      .  ++|++|++ |++
T Consensus       242 ~~~eivk~Li~-g~d  255 (661)
T PHA02917        242 IDIDIVKLLMK-GID  255 (661)
T ss_pred             CcHHHHHHHHh-CCc
Confidence            6  69999975 653

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=237.10  Aligned_cols=211  Identities=12%  Similarity=0.046  Sum_probs=166.4

Q ss_pred             HHcCcHHHHHHHHHhCCCcccccccCCChhHHHH--HHHcCcHHHHHHHHH-----------------------------
Q 014994          108 AALQMKDRVFLLQHWLLGMVGKALVEDVLPILVA--AFHCQLNMLRSYCIQ-----------------------------  156 (415)
Q Consensus       108 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~--A~~~g~~~lv~~ll~-----------------------------  156 (415)
                      ...+..+++++|+++|+++|.+  |.+|.||||+  |...|+.+++++|++                             
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~k--d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGR--DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence            4568999999999999999998  9999999995  555677999999999                             


Q ss_pred             ---hhcCCCCCc--------------------cccCCCC---------------------hHHHHHHH---Hhhhh-hhc
Q 014994          157 ---RIAGSNLDN--------------------FCLEREL---------------------PDEVSSEI---KSLRV-KSN  188 (415)
Q Consensus       157 ---~~~~~~~~~--------------------~~~~g~t---------------------pl~~a~~~---~~~~~-~~~  188 (415)
                         .  +.++..                    .+..|.+                     .|+.-...   ....+ ..+
T Consensus       288 ~~~~--~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelL  365 (672)
T PHA02730        288 VTPY--NVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCM  365 (672)
T ss_pred             cccC--CcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHH
Confidence               2  334333                    3444443                     22222221   22333 445


Q ss_pred             cccccCccCCCCCCccccHHHHHHHhcCC----HHHHHHHHHCC---CCC---CCCchHHHH---HHHCC---------C
Q 014994          189 QESEANIAEVDPMHAKIVRRIHKALHSDD----VELLKLLLDVS---NVT---LDDAYALHY---AAACC---------S  246 (415)
Q Consensus       189 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g---~~~---~~g~tpL~~---A~~~g---------~  246 (415)
                      +++||+++.   . ..|.||||+|+..++    .+++++|+++|   +++   ..|.||||.   |...+         .
T Consensus       366 Is~GAdIN~---k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~  441 (672)
T PHA02730        366 LDNGATMDK---T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETIL  441 (672)
T ss_pred             HHCCCCCCc---C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhH
Confidence            577877653   2 589999999998875    89999999998   343   679999984   33232         1


Q ss_pred             HHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHc--CCcchHHHHHhc
Q 014994          247 PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTS-DGQTAVAICRRM--TRRKDYIEASKQ  323 (415)
Q Consensus       247 ~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~-~g~tpL~~A~~~--~~~~~v~~l~~~  323 (415)
                      .++++.|+.. |+|+|.+|..|+||||+|+..++.+++++|+++||++|.+|. .|.||||+|+..  ++.++++.|++.
T Consensus       442 ~~ivk~LIs~-GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~  520 (672)
T PHA02730        442 IDVFDILSKY-MDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY  520 (672)
T ss_pred             HHHHHHHHhc-ccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc
Confidence            2468888885 999999999999999999999999999999999999999997 599999999974  789999999999


Q ss_pred             CCCc
Q 014994          324 GQET  327 (415)
Q Consensus       324 g~~~  327 (415)
                      |++.
T Consensus       521 ga~i  524 (672)
T PHA02730        521 HPTL  524 (672)
T ss_pred             CCCH
Confidence            9876

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=3.4e-28  Score=232.30  Aligned_cols=203  Identities=18%  Similarity=0.133  Sum_probs=177.6

Q ss_pred             CCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHH
Q 014994          133 EDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       133 ~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +.-.+-+..|+++|..+-++.+++.. +.+++..|.+|.|+||+|+..+.+.+ ..++++|++++.+..  .-+.|||||
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG--~l~stPLHW  118 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGG--VLGSTPLHW  118 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCC--CCCCCcchH
Confidence            34467789999999999999999976 78899999999999999999999888 555588988877764  568999999


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      |+++|+..+|++|+++| ++   |.+|.||||.||..|+.-.|.+||.. |+|+|.+|.+|+||||+|+..|+...+..|
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~-~~d~d~~D~~grTpLmwAaykg~~~~v~~L  197 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK-GADIDLRDNNGRTPLMWAAYKGFALFVRRL  197 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh-cccCCCcCCCCCCHHHHHHHhcccHHHHHH
Confidence            99999999999999999 44   78999999999999999999999997 899999999999999999999999889999


Q ss_pred             HhCCCCCCCCC-CCCCcHHHHHHHcCCcchHHHHHhcCCCcc----cccccHHHHHH
Q 014994          288 LSKGARASETT-SDGQTAVAICRRMTRRKDYIEASKQGQETN----KDRLCIDVLER  339 (415)
Q Consensus       288 l~~Gadin~~d-~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~----~~~~~~~~~~~  339 (415)
                      |+.|++++.+| ..|.||||+|+..|+...+.++.+.|.+.-    ....+.+.++.
T Consensus       198 L~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  198 LKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             HHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHH
Confidence            99999999999 899999999999999999995555554432    22345555544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=5.7e-28  Score=221.80  Aligned_cols=148  Identities=17%  Similarity=0.103  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      +.+||-.|+-.|+.++|++|+++|+++|..  .....|||.-||.-|+.++|++|+++  ++|++..|..|.|.|++|+.
T Consensus        84 gappLWaAsaAGHl~vVk~L~~~ga~VN~t--T~TNStPLraACfDG~leivKyLvE~--gad~~IanrhGhTcLmIa~y  159 (615)
T KOG0508|consen   84 GAPPLWAASAAGHLEVVKLLLRRGASVNDT--TRTNSTPLRAACFDGHLEIVKYLVEH--GADPEIANRHGHTCLMIACY  159 (615)
T ss_pred             CCchhhHHhccCcHHHHHHHHHhcCccccc--cccCCccHHHHHhcchhHHHHHHHHc--CCCCcccccCCCeeEEeeec
Confidence            456788888899999999999999999994  45556999999999999999999998  88999999999999999999


Q ss_pred             HHhhhhh-hccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC---CCCCCCchHHHHHHHCCCHHHHHHHH
Q 014994          180 IKSLRVK-SNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS---NVTLDDAYALHYAAACCSPKVFKEVL  254 (415)
Q Consensus       180 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~g~tpL~~A~~~g~~~~v~~Ll  254 (415)
                      .++..+. .+++.|++   +|.++..|.|+||.|++.|+.+++++|+.+|   ++|..|.|||..|+..|+.++|..|+
T Consensus       160 kGh~~I~qyLle~gAD---vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  160 KGHVDIAQYLLEQGAD---VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             cCchHHHHHHHHhCCC---cchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999884 44477755   5567779999999999999999999999999   78889999999999999999999888

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=4.4e-28  Score=201.87  Aligned_cols=213  Identities=16%  Similarity=0.109  Sum_probs=185.5

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIK  181 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~  181 (415)
                      +.+-.+...|+.+++..+....++-+.. .+..|+.+++.|+-+|+...+...+..  +...|..+..+++|+.++....
T Consensus        64 ~~~~~~~~s~nsd~~v~s~~~~~~~~~~-t~p~g~~~~~v~ap~~s~~k~sttltN--~~rgnevs~~p~s~~slsVhql  140 (296)
T KOG0502|consen   64 SLLTVAVRSGNSDVAVQSAQLDPDAIDE-TDPEGWSALLVAAPCGSVDKVSTTLTN--GARGNEVSLMPWSPLSLSVHQL  140 (296)
T ss_pred             cccchhhhcCCcHHHHHhhccCCCCCCC-CCchhhhhhhhcCCCCCcceeeeeecc--cccCCccccccCChhhHHHHHH
Confidence            4456677888888887666655554443 267799999999999999999999988  7778899999999999998887


Q ss_pred             hhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCCC---CCchHHHHHHHCCCHHHHHHHHhcC
Q 014994          182 SLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVTL---DDAYALHYAAACCSPKVFKEVLNMD  257 (415)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~---~g~tpL~~A~~~g~~~~v~~Ll~~~  257 (415)
                      ++.....+    --+.+|..|+.|.|||+||+..|++++|+|||+.| +++.   ...|+|..|+..|..++|++||.. 
T Consensus       141 ~L~~~~~~----~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r-  215 (296)
T KOG0502|consen  141 HLDVVDLL----VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR-  215 (296)
T ss_pred             HHHHHHHH----hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc-
Confidence            77765554    12678889999999999999999999999999999 7764   457999999999999999999997 


Q ss_pred             CCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       258 gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                      +.|||.-|.+|-|||-||+..|+.+||+.||..|||++..+..|.+++..|+..|+. +|+..+++
T Consensus       216 ~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  216 EVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             CCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999998 66666654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=232.02  Aligned_cols=207  Identities=14%  Similarity=0.129  Sum_probs=170.3

Q ss_pred             cHHHHHHHHHhCCCcccccccCCChhHHHHHHHcC--cHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH-----Hhhh
Q 014994          112 MKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQ--LNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEI-----KSLR  184 (415)
Q Consensus       112 ~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~-----~~~~  184 (415)
                      ..+.|+.|++. .+++.   ...+.|+++.+....  +.+++++|++.  |++++..+..|.||||.+...     ....
T Consensus        17 ~~~~v~~ll~~-~~~~~---~~~~~~~~~~yl~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKS-CNPNE---IVNEYSIFQKYLQRDSPSTDIVKLFINL--GANVNGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhc-CChhh---hcccchHHHHHHhCCCCCHHHHHHHHHC--CCCCCCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            46799999976 45555   356778777555444  69999999998  889999999999999998542     2233


Q ss_pred             h-hhccccccCccCCCCCCccccHHHHHHHhcC---CHHHHHHHHHCC-CC---CCCCchHHHHHHHCCC---HHHHHHH
Q 014994          185 V-KSNQESEANIAEVDPMHAKIVRRIHKALHSD---DVELLKLLLDVS-NV---TLDDAYALHYAAACCS---PKVFKEV  253 (415)
Q Consensus       185 ~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~---~~~v~~L  253 (415)
                      + ..+++.|++   +|.+|..|.||||+|+..+   +.+++++|+++| ++   |..|.||||+|+..|+   .++++.|
T Consensus        91 iv~~Ll~~Gad---iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~L  167 (489)
T PHA02798         91 IVKILIENGAD---INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL  167 (489)
T ss_pred             HHHHHHHCCCC---CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHH
Confidence            3 555577765   4556679999999999876   789999999999 54   5789999999999998   9999999


Q ss_pred             HhcCCCCccccC-CCCChHHHHHHHc----CCHHHHHHHHhCCCC-----------------------------------
Q 014994          254 LNMDSAGLNLKD-ARGRTVLHVAARR----NEPEVMVTLLSKGAR-----------------------------------  293 (415)
Q Consensus       254 l~~~gadvn~~d-~~g~TpLh~A~~~----~~~~~v~~Ll~~Gad-----------------------------------  293 (415)
                      ++. |+|+|..+ ..|.||||.++..    ++.+++++|+++|++                                   
T Consensus       168 l~~-gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~  246 (489)
T PHA02798        168 LEK-GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIF  246 (489)
T ss_pred             HHh-CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHH
Confidence            986 99999985 5789999998764    478999999988764                                   


Q ss_pred             ----CCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          294 ----ASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       294 ----in~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                          +|.+|..|+||||+|+..|+.++++.|++.|++++
T Consensus       247 ~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin  285 (489)
T PHA02798        247 SYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN  285 (489)
T ss_pred             hcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence                45567789999999999999999999999999986

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-27  Score=219.88  Aligned_cols=210  Identities=16%  Similarity=0.115  Sum_probs=174.1

Q ss_pred             HHHHHcCcHHHHHHHHHhCC-----C-cccccccCCChhHHHHHHHcCcHHHHHHHHHhhc-------CCCCCccccCCC
Q 014994          105 YASAALQMKDRVFLLQHWLL-----G-MVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIA-------GSNLDNFCLERE  171 (415)
Q Consensus       105 ~~A~~~g~~~~v~~Ll~~g~-----~-~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~-------~~~~~~~~~~g~  171 (415)
                      ..|+..|....+..|+...-     + ++.   +.+|-|||.+||++||.++|++|++...       ...++....+|.
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~---~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iega   85 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGE---VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGA   85 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhcc---ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCC
Confidence            35666666666654443311     1 122   6788899999999999999999999532       122445567889


Q ss_pred             ChHHHHHHHHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCC
Q 014994          172 LPDEVSSEIKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCS  246 (415)
Q Consensus       172 tpl~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~  246 (415)
                      +||-.|...+++.++. ++..|+++   |.......|||-.||.-|+.++|++|+++| |+   |..|.|.||+||..||
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~V---N~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh  162 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASV---NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGH  162 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCcc---ccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCc
Confidence            9999999999998844 44667544   444456779999999999999999999999 54   6889999999999999


Q ss_pred             HHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHh
Q 014994          247 PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK  322 (415)
Q Consensus       247 ~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~  322 (415)
                      .+++++|++. |+|+|.++..|+|+||.|++.|+++++++|+++|+.+.. |..|.|||..|+..|+.++|+.|+.
T Consensus       163 ~~I~qyLle~-gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  163 VDIAQYLLEQ-GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hHHHHHHHHh-CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999997 899999999999999999999999999999999999874 6669999999999999999999996

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.3e-27  Score=231.30  Aligned_cols=221  Identities=10%  Similarity=-0.041  Sum_probs=176.9

Q ss_pred             HHHH-HHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHH-cCcHHHHHHHHHhhcC-------------------
Q 014994          102 ELMY-ASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFH-CQLNMLRSYCIQRIAG-------------------  160 (415)
Q Consensus       102 ~~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~-~g~~~lv~~ll~~~~~-------------------  160 (415)
                      +++| .|...|+.|+|++|+++|+++|.+  +..|.||||+|+. .++.+++++|++.++.                   
T Consensus        73 ~~~~~~~s~n~~lElvk~LI~~GAdvN~~--~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~  150 (631)
T PHA02792         73 DIFEYLCSDNIDIELLKLLISKGLEINSI--KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRA  150 (631)
T ss_pred             cHHHHHHHhcccHHHHHHHHHcCCCcccc--cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccc
Confidence            3564 566779999999999999999997  7789999999966 6999999999999652                   


Q ss_pred             ---------------CCCCccccCCCChHHHHHHHH-------hhhh-hhccccccCccCCCCCCccccHHHHHHHhcC-
Q 014994          161 ---------------SNLDNFCLERELPDEVSSEIK-------SLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSD-  216 (415)
Q Consensus       161 ---------------~~~~~~~~~g~tpl~~a~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g-  216 (415)
                                     ..+|..+..|.||||+|....       ...+ +.++.+|+++...   |..|.||||+|+... 
T Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~---d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        151 EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY---TYREHTTLYYYVDKCD  227 (631)
T ss_pred             cccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc---CCCCChHHHHHHHccc
Confidence                           123456777889999987766       4444 5556777666554   457999999998877 


Q ss_pred             -CHHHHHHHHHCC-C-----------------------------------------------------------------
Q 014994          217 -DVELLKLLLDVS-N-----------------------------------------------------------------  229 (415)
Q Consensus       217 -~~~~v~~Ll~~g-~-----------------------------------------------------------------  229 (415)
                       +.|++++|++.. +                                                                 
T Consensus       228 i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q  307 (631)
T PHA02792        228 IKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQ  307 (631)
T ss_pred             chHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHH
Confidence             666777665432 0                                                                 


Q ss_pred             --------------------------C-CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCC--ChHHHHHHHcCC
Q 014994          230 --------------------------V-TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARG--RTVLHVAARRNE  280 (415)
Q Consensus       230 --------------------------~-~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g--~TpLh~A~~~~~  280 (415)
                                                + ...+..+++.||..|+.++|+.|++. |||+|.+|.+|  .||||+|+....
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~  386 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHE  386 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhcc
Confidence                                      0 00124467888888999999999986 99999999875  699999887765


Q ss_pred             H---HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          281 P---EVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       281 ~---~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      .   +++++|+++|||+|.+|..|+||||+|+..++.+++++|++.|++++
T Consensus       387 ~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN  437 (631)
T PHA02792        387 SDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN  437 (631)
T ss_pred             HhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            4   46899999999999999999999999999999999999999999876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.4e-26  Score=202.95  Aligned_cols=157  Identities=17%  Similarity=0.170  Sum_probs=135.5

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      .+.+.||||.|+..|+.++|+.|++.  .                                      +..+..|.||||+
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~--~--------------------------------------n~~~~~g~TpLh~   57 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF--V--------------------------------------NDCNDLYETPIFS   57 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh--h--------------------------------------hccCccCCCHHHH
Confidence            35578999999999999999999863  1                                      1234578999999


Q ss_pred             HHhcC--CHHHHHHHHHCC-CCC----CCCchHHHHHHHC---CCHHHHHHHHhcCCCCccccCCCCChHHHHHHH--cC
Q 014994          212 ALHSD--DVELLKLLLDVS-NVT----LDDAYALHYAAAC---CSPKVFKEVLNMDSAGLNLKDARGRTVLHVAAR--RN  279 (415)
Q Consensus       212 A~~~g--~~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~---g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~--~~  279 (415)
                      |+..+  +.+++++|+++| +++    ..|+||||+|+..   ++.++++.|++. |+|+|.+|..|.||||+|+.  .+
T Consensus        58 a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~  136 (209)
T PHA02859         58 CLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNV  136 (209)
T ss_pred             HHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccC
Confidence            98754  899999999999 654    3689999998864   478999999985 99999999999999999976  46


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHH-HHHcCCcchHHHHHhcCCCccc
Q 014994          280 EPEVMVTLLSKGARASETTSDGQTAVAI-CRRMTRRKDYIEASKQGQETNK  329 (415)
Q Consensus       280 ~~~~v~~Ll~~Gadin~~d~~g~tpL~~-A~~~~~~~~v~~l~~~g~~~~~  329 (415)
                      +.+++++|+++|++++.+|.+|.||||. |+..++.+++++|++.|+++..
T Consensus       137 ~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~  187 (209)
T PHA02859        137 RINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINE  187 (209)
T ss_pred             CHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence            8999999999999999999999999996 5668899999999999998763

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=5e-26  Score=238.21  Aligned_cols=217  Identities=16%  Similarity=0.042  Sum_probs=176.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHh--CCCcccccccCCChhHHH-HHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHW--LLGMVGKALVEDVLPILV-AAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDE  175 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~g~t~L~-~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~  175 (415)
                      ...+.++.|+..|+.+.++.+++.  +.++|..  |..|.|||| .|+.+++.++++.|++.++      .+..|.||||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~--d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh   87 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCP--DRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLH   87 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCc--CccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHH
Confidence            356789999999999999999998  8888875  899999999 8999999999999999743      5788999999


Q ss_pred             HHHHH--Hhh--hhhhccccccCc------cC-CCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCCC-----------
Q 014994          176 VSSEI--KSL--RVKSNQESEANI------AE-VDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVTL-----------  232 (415)
Q Consensus       176 ~a~~~--~~~--~~~~~~~~~~~~------~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~-----------  232 (415)
                      .|+..  ...  .+......+.+.      .. ....+..|.||||+|+..|+.++|++|+++| +++.           
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~  167 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQ  167 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCC
Confidence            99762  211  112222222110      01 1112346999999999999999999999999 6642           


Q ss_pred             ------CCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcC---------CHHHHHHHHhCCCCC---
Q 014994          233 ------DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRN---------EPEVMVTLLSKGARA---  294 (415)
Q Consensus       233 ------~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~---------~~~~v~~Ll~~Gadi---  294 (415)
                            .|.||||+|+..|+.++++.|++. |+|+|.+|..|+||||+|+..+         ...+.+++++.++..   
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~-gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~  246 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSED-PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDS  246 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhcC-CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCh
Confidence                  488999999999999999999985 8999999999999999999986         344667777776654   


Q ss_pred             ----CCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          295 ----SETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       295 ----n~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                          +..|.+|.||||+|+..|+.++++.+++.+
T Consensus       247 ~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       247 KELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             HhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence                677999999999999999999999999843

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=8.7e-26  Score=237.78  Aligned_cols=194  Identities=14%  Similarity=0.084  Sum_probs=159.0

Q ss_pred             HcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhh-h
Q 014994          109 ALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVK-S  187 (415)
Q Consensus       109 ~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~-~  187 (415)
                      .....++-.++.+.+.. +.   +..+.++|+.||..|+.++++.|++.  +.++|..|..|.||||+|+..++..+. .
T Consensus       503 ~l~~l~v~~ll~~~~~~-~~---~~~~~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~  576 (823)
T PLN03192        503 ELHDLNVGDLLGDNGGE-HD---DPNMASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLV  576 (823)
T ss_pred             hhccccHHHHHhhcccc-cC---CccchhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHH
Confidence            33455555566665543 22   45567888888888888888888877  677888888888888888877777663 3


Q ss_pred             ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC-CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccC
Q 014994          188 NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV-TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD  265 (415)
Q Consensus       188 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d  265 (415)
                      ++..|++   +|.+|.+|.||||+|+..|+.+++++|++.+ .. ...|.++||+|+..|+.++++.|++. |+|+|.+|
T Consensus       577 Ll~~gad---in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-Gadin~~d  652 (823)
T PLN03192        577 LLKHACN---VHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQ-GLNVDSED  652 (823)
T ss_pred             HHhcCCC---CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHC-CCCCCCCC
Confidence            3455654   4556679999999999999999999999988 22 34678999999999999999999986 99999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CcHHHHHHHcC
Q 014994          266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDG-QTAVAICRRMT  312 (415)
Q Consensus       266 ~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g-~tpL~~A~~~~  312 (415)
                      .+|+||||+|+..|+.+++++|+++|||++..|..| .||++++....
T Consensus       653 ~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        653 HQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999988 99999886643

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.4e-25  Score=220.63  Aligned_cols=225  Identities=12%  Similarity=0.043  Sum_probs=171.1

Q ss_pred             hHHHHHHHHH-cCcHHHHHHHHHhCCCcccc----------------------------------cccCCChhHHHHHHH
Q 014994          100 VIELMYASAA-LQMKDRVFLLQHWLLGMVGK----------------------------------ALVEDVLPILVAAFH  144 (415)
Q Consensus       100 ~~~~L~~A~~-~g~~~~v~~Ll~~g~~~~~~----------------------------------~~~~~g~t~L~~A~~  144 (415)
                      +.+++++|+. .|++|++++|++.|+++..+                                  ..|..|.||||+|+.
T Consensus       105 ~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~  184 (631)
T PHA02792        105 INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII  184 (631)
T ss_pred             CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh
Confidence            4567888866 69999999999999874321                                  114569999999999


Q ss_pred             cC-------cHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH--hhhhhhcc--------------------------
Q 014994          145 CQ-------LNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIK--SLRVKSNQ--------------------------  189 (415)
Q Consensus       145 ~g-------~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~--~~~~~~~~--------------------------  189 (415)
                      ++       +.++++.|+++  +++++..|..|.||||+|....  ...+...+                          
T Consensus       185 ~~s~~~~~~~~~v~k~Li~~--g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~  262 (631)
T PHA02792        185 TRSQDGYATSLDVINYLISH--EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKN  262 (631)
T ss_pred             hCCcccccCCHHHHHHHHhC--CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCc
Confidence            99       79999999999  7788889999999999984332  11110000                          


Q ss_pred             -----------ccccCccC--------------------------------------------------CCCCCccccHH
Q 014994          190 -----------ESEANIAE--------------------------------------------------VDPMHAKIVRR  208 (415)
Q Consensus       190 -----------~~~~~~~~--------------------------------------------------~~~~~~~g~t~  208 (415)
                                 ..|..+..                                                  .+........+
T Consensus       263 ~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~  342 (631)
T PHA02792        263 HKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINK  342 (631)
T ss_pred             cCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchH
Confidence                       00000000                                                  11111235667


Q ss_pred             HHHHHhcCCHHHHHHHHHCC-CCC---CC--CchHHHHHHHCCCHH---HHHHHHhcCCCCccccCCCCChHHHHHHHcC
Q 014994          209 IHKALHSDDVELLKLLLDVS-NVT---LD--DAYALHYAAACCSPK---VFKEVLNMDSAGLNLKDARGRTVLHVAARRN  279 (415)
Q Consensus       209 L~~A~~~g~~~~v~~Ll~~g-~~~---~~--g~tpL~~A~~~g~~~---~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~  279 (415)
                      ++.|+..|+.++|++|+++| +++   ..  +.||||+|+..+..+   +++.|+.. |+|+|.+|..|+||||+|+..+
T Consensus       343 ~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~-GADIN~kD~~G~TPLh~Aa~~~  421 (631)
T PHA02792        343 YFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY-IDDINKIDKHGRSILYYCIESH  421 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc-CCccccccccCcchHHHHHHcC
Confidence            89999999999999999999 553   33  469999988766543   46777774 9999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH--cC--------CcchHHHHHhcCCCc
Q 014994          280 EPEVMVTLLSKGARASETTSDGQTAVAICRR--MT--------RRKDYIEASKQGQET  327 (415)
Q Consensus       280 ~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~--~~--------~~~~v~~l~~~g~~~  327 (415)
                      +.+++++|+++||++|.+|..|.||||+|+.  .+        ...+++.+++.|.++
T Consensus       422 n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        422 SVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            9999999999999999999999999999976  22        245688888888665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=8.6e-25  Score=207.81  Aligned_cols=188  Identities=13%  Similarity=-0.008  Sum_probs=152.3

Q ss_pred             hhhhHHHHHHHHH--cCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChH
Q 014994           97 VNYVIELMYASAA--LQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPD  174 (415)
Q Consensus        97 ~~~~~~~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl  174 (415)
                      .+...|+||.++.  .|+.++|++|+++|++++.+    ++.||||.|+..|+.+++++|++.++  +.   ...+.+|+
T Consensus       113 ~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~----~~~t~lh~A~~~~~~eIVk~Lls~Ga--~~---~n~~~~~l  183 (437)
T PHA02795        113 CNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI----ECLNAYFRGICKKESSVVEFILNCGI--PD---ENDVKLDL  183 (437)
T ss_pred             cccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC----CCCCHHHHHHHcCcHHHHHHHHhcCC--cc---cccccchh
Confidence            3457899999999  89999999999999999873    45899999999999999999999843  21   11122332


Q ss_pred             HHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHH
Q 014994          175 EVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVF  250 (415)
Q Consensus       175 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v  250 (415)
                      +-                          ..+.|++|.|+..++.+++++|+++| ++   |..|.||||+|+..|+.+++
T Consensus       184 ~~--------------------------~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiV  237 (437)
T PHA02795        184 YK--------------------------IIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLV  237 (437)
T ss_pred             hh--------------------------hhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHH
Confidence            21                          24679999999999999999999999 55   56899999999999999999


Q ss_pred             HHHHhcCCCCccccCCCCChHHHHHHHcCC--------HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHh
Q 014994          251 KEVLNMDSAGLNLKDARGRTVLHVAARRNE--------PEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK  322 (415)
Q Consensus       251 ~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~--------~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~  322 (415)
                      ++|++. |+++|.+|..|+||||+|+..|+        .+++++|+++|++++.....   ++...  ..+.++++.++.
T Consensus       238 elLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~---~~~~~--~~n~~~ik~lI~  311 (437)
T PHA02795        238 SWLLEN-GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA---ILNNT--IENHDVIKLCIK  311 (437)
T ss_pred             HHHHHC-CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH---hhhcc--cchHHHHHHHHH
Confidence            999986 99999999999999999999984        69999999999999875432   22211  124566666665


Q ss_pred             cCC
Q 014994          323 QGQ  325 (415)
Q Consensus       323 ~g~  325 (415)
                      +..
T Consensus       312 y~~  314 (437)
T PHA02795        312 YFM  314 (437)
T ss_pred             HHH
Confidence            554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=7.3e-25  Score=195.51  Aligned_cols=159  Identities=21%  Similarity=0.164  Sum_probs=135.0

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      |.+|+|+||||+.++++++|+.|++.+ -.++|..+.-|+||+++++....-                            
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk----------------------------  315 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLK----------------------------  315 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccC-cccccccccccccHHHHHHHHhhc----------------------------
Confidence            899999999999999999999999974 235555555555555554211000                            


Q ss_pred             HHhcCCHHHHHHHHHCCCCC----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVSNVT----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                        ...+.++|..|...|++|    ..|.|+|++|+.+|+.++|+.||.. |+|||.+|.+|.|+|++||++||.+||++|
T Consensus       316 --~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLac-gAdVNiQDdDGSTALMCA~EHGhkEivklL  392 (452)
T KOG0514|consen  316 --QPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLAC-GADVNIQDDDGSTALMCAAEHGHKEIVKLL  392 (452)
T ss_pred             --chhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHc-cCCCccccCCccHHHhhhhhhChHHHHHHH
Confidence              123678999999999887    4799999999999999999999985 999999999999999999999999999999


Q ss_pred             HhC-CCCCCCCCCCCCcHHHHHHHcCCcchHHHHHh
Q 014994          288 LSK-GARASETTSDGQTAVAICRRMTRRKDYIEASK  322 (415)
Q Consensus       288 l~~-Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~  322 (415)
                      |.. ++|+...|.+|-|+|.+|-..||.++.-+|-.
T Consensus       393 LA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  393 LAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             hccCcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            987 99999999999999999999999998776654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=9.2e-23  Score=214.93  Aligned_cols=158  Identities=17%  Similarity=0.133  Sum_probs=138.4

Q ss_pred             cccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHH
Q 014994          166 FCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHY  240 (415)
Q Consensus       166 ~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~  240 (415)
                      .+..+.++|+.|+..+...+ ..++..|+++   |..|..|.||||+|+..|+.+++++|+++| ++   |.+|+||||+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~---n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~  597 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP---DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWN  597 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            35567899999988887765 4445667654   556779999999999999999999999999 54   5789999999


Q ss_pred             HHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHH
Q 014994          241 AAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEA  320 (415)
Q Consensus       241 A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l  320 (415)
                      |+..|+.++++.|+.. ++..+  ...|.||||+|+..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+++++|
T Consensus       598 A~~~g~~~iv~~L~~~-~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        598 AISAKHHKIFRILYHF-ASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHHhCCHHHHHHHHhc-CcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999974 56554  34678999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccc
Q 014994          321 SKQGQETNK  329 (415)
Q Consensus       321 ~~~g~~~~~  329 (415)
                      +++|+++..
T Consensus       675 l~~GAdv~~  683 (823)
T PLN03192        675 IMNGADVDK  683 (823)
T ss_pred             HHcCCCCCC
Confidence            999999863

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=7.4e-23  Score=174.89  Aligned_cols=129  Identities=13%  Similarity=0.170  Sum_probs=115.7

Q ss_pred             CCCCCccccHHHHHHHhcCCHHHHHHHHH------CC----CCCCCCchHHHHHHHCCC----HHHHHHHHhcCCCCccc
Q 014994          198 VDPMHAKIVRRIHKALHSDDVELLKLLLD------VS----NVTLDDAYALHYAAACCS----PKVFKEVLNMDSAGLNL  263 (415)
Q Consensus       198 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g----~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~gadvn~  263 (415)
                      ++.++..|.||||+|+..|+.+++++|+.      .|    ..|..|+||||+|+..|+    .++++.|+.. |+++|.
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINA   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCC
Confidence            34566789999999999999999999854      23    346789999999999998    5888999885 999999


Q ss_pred             cCC-CCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          264 KDA-RGRTVLHVAARRNEPEVMVTLLS-KGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       264 ~d~-~g~TpLh~A~~~~~~~~v~~Ll~-~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      ++. .|+||||+|+..++.+++++|++ .|++++..|.+|+||||+|+..++.+++++|.+.+++.
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            985 99999999999999999999998 59999999999999999999999999999999987664

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=1.8e-22  Score=171.65  Aligned_cols=102  Identities=18%  Similarity=0.179  Sum_probs=59.9

Q ss_pred             CCccccHHHHHHHhcCCHHH---HHHHHHCC-CCC----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHH
Q 014994          201 MHAKIVRRIHKALHSDDVEL---LKLLLDVS-NVT----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVL  272 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~~~---v~~Ll~~g-~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpL  272 (415)
                      .|..|+||||+|+..|+.+.   +++|++.| ++|    ..|.||||+|+..|+.+++++|+...|++++.+|..|+|||
T Consensus        53 ~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL  132 (166)
T PHA02743         53 YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAY  132 (166)
T ss_pred             cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHH
Confidence            34456666666666555432   55666666 332    24566666666666666666666433566666666666666


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Q 014994          273 HVAARRNEPEVMVTLLSKGARASETTSDGQ  302 (415)
Q Consensus       273 h~A~~~~~~~~v~~Ll~~Gadin~~d~~g~  302 (415)
                      |+|+..++.+++++|+++|++++.++..|.
T Consensus       133 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        133 HIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            666666666666666666666666655543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=9.3e-23  Score=197.57  Aligned_cols=242  Identities=17%  Similarity=0.085  Sum_probs=181.0

Q ss_pred             HHHHHHcCcHHHHHHHHHhC-------------CCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCC
Q 014994          104 MYASAALQMKDRVFLLQHWL-------------LGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLER  170 (415)
Q Consensus       104 L~~A~~~g~~~~v~~Ll~~g-------------~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g  170 (415)
                      |.-|+..|+.+.+..|++.-             .++|..  |.+|.|+||.|+.+|+.+++..|++.  .+-++..+..|
T Consensus         7 l~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q--d~~gfTalhha~Lng~~~is~llle~--ea~ldl~d~kg   82 (854)
T KOG0507|consen    7 LIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ--DYSGFTLLHHAVLNGQNQISKLLLDY--EALLDLCDTKG   82 (854)
T ss_pred             HHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc--CccchhHHHHHHhcCchHHHHHHhcc--hhhhhhhhccC
Confidence            56678888888888777531             123333  67888999999999999999888888  55677778888


Q ss_pred             CChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC----CCCCCCchHHHHHHHCC
Q 014994          171 ELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS----NVTLDDAYALHYAAACC  245 (415)
Q Consensus       171 ~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~g~tpL~~A~~~g  245 (415)
                      .+|||+|++.++.++ +.++..+   ..+|..+..|.||||.|+..|+.+++.+|+.+|    ..|..+.|+|-.|++.|
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~---d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQT---DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcc---cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhh
Confidence            899999988888777 3333444   555666678889999999999999999999888    45778889999999999


Q ss_pred             CHHHHHHHHhcCCCCc--------cccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchH
Q 014994          246 SPKVFKEVLNMDSAGL--------NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDY  317 (415)
Q Consensus       246 ~~~~v~~Ll~~~gadv--------n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v  317 (415)
                      ..++|+.|+.. ..++        ..++-.+.+|||.|+.+|+.++++.|+++|.|+|.....| |+||.|+..|..++|
T Consensus       160 r~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  160 RAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             hhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhh
Confidence            99998888865 2332        2334567788999999999999999999999999888777 899999999999999


Q ss_pred             HHHHhcCCCcc-cccccHHHHHHHHhhcCCCCCCchhh
Q 014994          318 IEASKQGQETN-KDRLCIDVLEREMRRNSMSRFPPKKF  354 (415)
Q Consensus       318 ~~l~~~g~~~~-~~~~~~~~~~~~~~~~p~~r~~~~~~  354 (415)
                      ..|++.|...- .+.+|...++..+-..+-.|+++..+
T Consensus       238 r~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga  275 (854)
T KOG0507|consen  238 RFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGA  275 (854)
T ss_pred             hHHHhhccccccccccchHHHHHHHhcchhhhhhhhhh
Confidence            99988887663 44455555665333333333444333

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=5.4e-23  Score=199.16  Aligned_cols=204  Identities=19%  Similarity=0.127  Sum_probs=185.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      ++.|+||.|+..|+.+++++|+++.+-++..  |..|.+|||+|++.|+.++++.++..  .+.+|..+..|.||||.|+
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~--d~kg~~plhlaaw~g~~e~vkmll~q--~d~~na~~~e~~tplhlaa  123 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLC--DTKGILPLHLAAWNGNLEIVKMLLLQ--TDILNAVNIENETPLHLAA  123 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhh--hccCcceEEehhhcCcchHHHHHHhc--ccCCCcccccCcCccchhh
Confidence            6899999999999999999999998888776  78999999999999999999999998  6889999999999999999


Q ss_pred             HHHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C-----------CCCCCchHHHHHHHCC
Q 014994          179 EIKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N-----------VTLDDAYALHYAAACC  245 (415)
Q Consensus       179 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~-----------~~~~g~tpL~~A~~~g  245 (415)
                      +-++..+.. ++..|+++...|   +.+.|+|-.|++.|..++|+.|++.. .           .+..+-+|||.|+++|
T Consensus       124 qhgh~dvv~~Ll~~~adp~i~n---ns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  124 QHGHLEVVFYLLKKNADPFIRN---NSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             hhcchHHHHHHHhcCCCccccC---cccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcc
Confidence            999998844 448888888766   58999999999999999999999875 1           1234678999999999


Q ss_pred             CHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 014994          246 SPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM  311 (415)
Q Consensus       246 ~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~  311 (415)
                      |.++++.|+.. |.|+|.....| |+||.|+..|..++|.+|++.|.+..++|.+|+|+|++-...
T Consensus       201 h~~~~~~ll~a-g~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  201 HVECMQALLEA-GFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hHHHHHHHHhc-CCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhc
Confidence            99999999986 99999998777 999999999999999999999999999999999999987664

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=8.2e-24  Score=176.48  Aligned_cols=197  Identities=14%  Similarity=0.038  Sum_probs=178.6

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .+.++++.|+-.|+...++.++.+|+..|.-  +-.+++|+.+++...+.+.+..+.+.    .+|..|..|.|||.+|+
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttltN~~rgnev--s~~p~s~~slsVhql~L~~~~~~~~n----~VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTLTNGARGNEV--SLMPWSPLSLSVHQLHLDVVDLLVNN----KVNACDEFGFTPLIWAA  168 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeeecccccCCcc--ccccCChhhHHHHHHHHHHHHHHhhc----cccCccccCchHhHHHH
Confidence            3888999999999999999999999999985  88899999999999988888777764    68888999999999999


Q ss_pred             HHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC---CCCchHHHHHHHCCCHHHHHHH
Q 014994          179 EIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT---LDDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~---~~g~tpL~~A~~~g~~~~v~~L  253 (415)
                      ..+++.+ .+++..|+++..+.   ++..|+|.+|+..|..++|++||+.+ ++|   -+|.|||.||++.||.++++.|
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lg---k~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~L  245 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALG---KYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESL  245 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhh---hhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHH
Confidence            9999988 45558888887766   58899999999999999999999999 765   5788999999999999999999


Q ss_pred             HhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 014994          254 LNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVA  306 (415)
Q Consensus       254 l~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~  306 (415)
                      |.. |+|++..+..|.+++..|+..|+. +|+..|++-++.+.+|+.-.||+|
T Consensus       246 l~s-GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  246 LNS-GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             Hhc-CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            997 999999999999999999999998 999999988999999988888875

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=5.7e-23  Score=192.62  Aligned_cols=199  Identities=20%  Similarity=0.149  Sum_probs=131.8

Q ss_pred             HHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhh
Q 014994          104 MYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSL  183 (415)
Q Consensus       104 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~  183 (415)
                      +.-|+..|+.+-|+.|+..|++++..  +.+|.|+||-++.-.+.+||.++++.  +.++|..|.+||||||.|+..+++
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~~~~--n~DglTalhq~~id~~~e~v~~l~e~--ga~Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASPNLC--NVDGLTALHQACIDDNLEMVKFLVEN--GANVNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCcccc--CCccchhHHHHHhcccHHHHHHHHHh--cCCccccccccCCcchhhcccccH
Confidence            34455556666666666666666553  55666666666666666666666665  555666666666666666544444


Q ss_pred             hhhh-ccccccCccCCCCCCccccHHHHH------------HHhc-C-CH------------HHHHHHHHCC---C-CCC
Q 014994          184 RVKS-NQESEANIAEVDPMHAKIVRRIHK------------ALHS-D-DV------------ELLKLLLDVS---N-VTL  232 (415)
Q Consensus       184 ~~~~-~~~~~~~~~~~~~~~~~g~t~L~~------------A~~~-g-~~------------~~v~~Ll~~g---~-~~~  232 (415)
                      .+.. ++..|++...+|.   .|..|+-.            ++.. | .+            .=+...+..|   + .+.
T Consensus       120 ~i~~~li~~gA~~~avNs---dg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNS---DGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA  196 (527)
T ss_pred             HHHHHHHHhhhhhhhccC---CCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence            4422 2244444433332   22222111            1111 1 01            1112233355   2 234


Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 014994          233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR  310 (415)
Q Consensus       233 ~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~  310 (415)
                      .|.|+||.|+.+|+.++..+||.. |.+++.+|.+||||||.|+..|..+++++|+++|++++..+..|.||+.+|..
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~a-g~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQA-GYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHh-ccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            599999999999999999999986 89999999999999999999999999999999999999999999999999876

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.9e-22  Score=170.46  Aligned_cols=127  Identities=17%  Similarity=0.204  Sum_probs=113.5

Q ss_pred             CCccccHHHHHHHhcCCH----HHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHH---HHHHHhcCCCCccccC-CCC
Q 014994          201 MHAKIVRRIHKALHSDDV----ELLKLLLDVS-N---VTLDDAYALHYAAACCSPKV---FKEVLNMDSAGLNLKD-ARG  268 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~---v~~Ll~~~gadvn~~d-~~g  268 (415)
                      .+.++.++||.||..|+.    +++++|++.| .   .|..|+||||+|+..|+.+.   +++|+.. |+++|.++ ..|
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadin~~d~~~g   94 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNM-GADINARELGTG   94 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCCCCCCCCCC
Confidence            445788999999999998    6677888888 3   46789999999999988654   7788875 99999998 589


Q ss_pred             ChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          269 RTVLHVAARRNEPEVMVTLLS-KGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       269 ~TpLh~A~~~~~~~~v~~Ll~-~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      +||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.+++++|+..|++..
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999995 799999999999999999999999999999999998764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=9.1e-23  Score=171.82  Aligned_cols=129  Identities=16%  Similarity=0.077  Sum_probs=110.3

Q ss_pred             cCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-----------CCCCCCchHHHHHHHCCCHH---HHHHHHhcCCCCc
Q 014994          196 AEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-----------NVTLDDAYALHYAAACCSPK---VFKEVLNMDSAGL  261 (415)
Q Consensus       196 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------~~~~~g~tpL~~A~~~g~~~---~v~~Ll~~~gadv  261 (415)
                      ...+..|.+|.||||+|+..|+.  +++++..+           ..|..|+||||+|+..|+.+   +++.|+.. |+++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadi   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADI   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCc
Confidence            34455678899999999999984  33333222           24778999999999999874   57788875 9999


Q ss_pred             cccC-CCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          262 NLKD-ARGRTVLHVAARRNEPEVMVTLLS-KGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       262 n~~d-~~g~TpLh~A~~~~~~~~v~~Ll~-~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      |.++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+..|+.+
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9998 499999999999999999999998 49999999999999999999999999999999999764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.87  E-value=8.1e-22  Score=206.54  Aligned_cols=172  Identities=16%  Similarity=0.011  Sum_probs=141.6

Q ss_pred             CCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHH-HHHHHHhhhhhhcc-ccccCccCCCCCCccccHHHH
Q 014994          133 EDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDE-VSSEIKSLRVKSNQ-ESEANIAEVDPMHAKIVRRIH  210 (415)
Q Consensus       133 ~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~-~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~L~  210 (415)
                      ..+.++|+.|+..|+.+.++.+++...+.++|..|..|.|||| .|.......+..++ ..|+       .+..|.||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-------~~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-------RGAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-------CCCcChHHHH
Confidence            4578999999999999999999987667789999999999999 77777776664444 4443       4568999999


Q ss_pred             HHHhcC---CHHHHHHHHHCC-C-------------CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccC--------
Q 014994          211 KALHSD---DVELLKLLLDVS-N-------------VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD--------  265 (415)
Q Consensus       211 ~A~~~g---~~~~v~~Ll~~g-~-------------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d--------  265 (415)
                      .|+..+   ...++..++..+ +             .+..|.||||+||.+|+.++|+.||+. |+|+|.++        
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~  166 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKS  166 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcC
Confidence            998732   223344444433 1             123589999999999999999999996 99999763        


Q ss_pred             ------CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 014994          266 ------ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       266 ------~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~  312 (415)
                            ..|.||||+|+..|+.+++++|+++|+|+|.+|..|+||||+|+..+
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence                  35899999999999999999999999999999999999999999976

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=6.7e-21  Score=174.59  Aligned_cols=125  Identities=14%  Similarity=0.137  Sum_probs=108.7

Q ss_pred             CCCccccH-HHHHHHhcCCHHHHHHHHHCC-CCC-------CCCchHHHHHHHCCCHHHHHHHHhcCCCCcccc-CCCCC
Q 014994          200 PMHAKIVR-RIHKALHSDDVELLKLLLDVS-NVT-------LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK-DARGR  269 (415)
Q Consensus       200 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g-~~~-------~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~-d~~g~  269 (415)
                      .+|..|.| +||.|+..|+.+++++|+++| ++|       ..|.||||+|+..|+.++++.|++. |+|+|.+ +..|.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~g~  105 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEAKI  105 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCCCC
Confidence            35556655 567778889999999999999 654       3699999999999999999999985 9999996 46899


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCC
Q 014994          270 TVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQ  325 (415)
Q Consensus       270 TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~  325 (415)
                      ||||+|+..|+.+++++|+++||+++.+|..|.||||+|+..++..++..+...+.
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~  161 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNEI  161 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999888887766554433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=2.1e-21  Score=163.49  Aligned_cols=133  Identities=20%  Similarity=0.102  Sum_probs=105.7

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      |.+|.||||+|+..|+.  +..+.......+.                              +...++..|.+|.||||+
T Consensus        14 d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~------------------------------~~~~~~~~d~~g~t~Lh~   61 (154)
T PHA02736         14 DIEGENILHYLCRNGGV--TDLLAFKNAISDE------------------------------NRYLVLEYNRHGKQCVHI   61 (154)
T ss_pred             CCCCCCHHHHHHHhCCH--HHHHHHHHHhcch------------------------------hHHHHHHhcCCCCEEEEe
Confidence            77899999999999983  2333222111000                              001112345789999999


Q ss_pred             HHhcCCH---HHHHHHHHCC-CCC----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHH
Q 014994          212 ALHSDDV---ELLKLLLDVS-NVT----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEV  283 (415)
Q Consensus       212 A~~~g~~---~~v~~Ll~~g-~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~  283 (415)
                      |+..|+.   +++++|++.| +++    ..|+||||+|+..|+.+++++|+...|+++|.+|..|+||||+|+..|+.++
T Consensus        62 a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i  141 (154)
T PHA02736         62 VSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKM  141 (154)
T ss_pred             ecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHH
Confidence            9999987   4689999999 543    4799999999999999999999975689999999999999999999999999


Q ss_pred             HHHHHhCCCCCCC
Q 014994          284 MVTLLSKGARASE  296 (415)
Q Consensus       284 v~~Ll~~Gadin~  296 (415)
                      +++|+++|+++++
T Consensus       142 ~~~Ll~~ga~~~~  154 (154)
T PHA02736        142 MNILRAKGAQCKV  154 (154)
T ss_pred             HHHHHHcCCCCCC
Confidence            9999999998763

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=1.1e-20  Score=161.39  Aligned_cols=133  Identities=17%  Similarity=0.159  Sum_probs=112.4

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +..|.||||+|+..|+.++++.++....+      .                      ..|   ..++.+|..|.||||+
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~------~----------------------~~g---a~in~~d~~g~T~Lh~   66 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRG------D----------------------CHA---AALNATDDAGQMCIHI   66 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhcc------c----------------------hhh---hhhhccCCCCCcHHHH
Confidence            78899999999999999999988764210      0                      001   2344566789999999


Q ss_pred             HHhcCC----HHHHHHHHHCC-CCC----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHH
Q 014994          212 ALHSDD----VELLKLLLDVS-NVT----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPE  282 (415)
Q Consensus       212 A~~~g~----~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~  282 (415)
                      |+..|+    .+++++|++.| +++    ..|+||||+|+..++.+++++|+...|++++..|..|+||||+|+..++.+
T Consensus        67 A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741         67 AAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHH
Confidence            999998    58999999999 554    379999999999999999999997558999999999999999999999999


Q ss_pred             HHHHHHhCCCCCC
Q 014994          283 VMVTLLSKGARAS  295 (415)
Q Consensus       283 ~v~~Ll~~Gadin  295 (415)
                      ++++|++.++...
T Consensus       147 iv~~L~~~~~~~~  159 (169)
T PHA02741        147 MMQILREIVATSR  159 (169)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999876643

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=2e-20  Score=150.72  Aligned_cols=141  Identities=20%  Similarity=0.167  Sum_probs=118.7

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHh
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALH  214 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  214 (415)
                      -.-.+.+|+..+....|+.|++.                                    +.+.+|.+|.+|+||||.|+.
T Consensus        63 p~rl~lwaae~nrl~eV~~lL~e------------------------------------~an~vNtrD~D~YTpLHRAaY  106 (228)
T KOG0512|consen   63 PIRLLLWAAEKNRLTEVQRLLSE------------------------------------KANHVNTRDEDEYTPLHRAAY  106 (228)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHh------------------------------------ccccccccccccccHHHHHHh
Confidence            34456778888888888888775                                    336678899999999999999


Q ss_pred             cCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCH-HHHHHHHh
Q 014994          215 SDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEP-EVMVTLLS  289 (415)
Q Consensus       215 ~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~-~~v~~Ll~  289 (415)
                      +|+.++|+.|+..| ++   ...||||||.||..++.+++..||.. |+|||+.....+||||+||...+. ..+.+|+.
T Consensus       107 n~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqh-gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  107 NGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQH-GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             cCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhc-cCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence            99999999999998 44   56899999999999999999999985 999999999999999999987655 45666654


Q ss_pred             -CCCCCCCCCCCCCcHHHHHHHcC
Q 014994          290 -KGARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       290 -~Gadin~~d~~g~tpL~~A~~~~  312 (415)
                       .++++-..+..+.||+.+|.+.+
T Consensus       186 dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  186 DRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             ccccChhhhcCccchHHHHHHHhh
Confidence             58888899999999999998854

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=4.3e-21  Score=166.52  Aligned_cols=132  Identities=24%  Similarity=0.303  Sum_probs=114.3

Q ss_pred             cCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC---CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChH
Q 014994          196 AEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT---LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTV  271 (415)
Q Consensus       196 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~---~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~Tp  271 (415)
                      .+.|..|..|.+||||||+.|+..+|+.||..| .+|   ....||||.|+.+||.++|+.||.. .+|+|+.+..|+||
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~-kadvnavnehgntp  103 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSR-KADVNAVNEHGNTP  103 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHH-hcccchhhccCCCc
Confidence            456778889999999999999999999999999 443   4457999999999999999999997 69999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          272 LHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       272 Lh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      |||||..|+-.+++-|+..||-+++.|++|.|||..|.-.-..-+.++.-+.|+.++
T Consensus       104 lhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999998755433334444455666554

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-21  Score=194.27  Aligned_cols=224  Identities=14%  Similarity=0.046  Sum_probs=200.9

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCC-ccccCCCChHH
Q 014994           97 VNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLD-NFCLERELPDE  175 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~-~~~~~g~tpl~  175 (415)
                      .....++|-.|+..|+.|+|++|+.+|+++..+  |..|.+||.+|+-.||..+|+.|+..  .++++ ..|..+.|+|.
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehr--dkkgf~plImaatagh~tvV~~llk~--ha~veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHR--DKKGFVPLIMAATAGHITVVQDLLKA--HADVEAQSDRTKDTMLS  829 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhccccccc--ccccchhhhhhcccCchHHHHHHHhh--hhhhhhhcccccCceEE
Confidence            344567899999999999999999999999997  99999999999999999999999988  55666 46788999999


Q ss_pred             HHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC-----CCCchHHHHHHHCCCHH
Q 014994          176 VSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT-----LDDAYALHYAAACCSPK  248 (415)
Q Consensus       176 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~-----~~g~tpL~~A~~~g~~~  248 (415)
                      +|+..+..++ .+++..|++....|.   ...|||.+|...|..+++++||.+| .+|     +.|-+||+.|..+||..
T Consensus       830 lacsggr~~vvelLl~~gankehrnv---sDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~  906 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAGANKEHRNV---SDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA  906 (2131)
T ss_pred             EecCCCcchHHHHHHHhhccccccch---hhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccH
Confidence            9988888777 445577877776664   6689999999999999999999999 665     46789999999999999


Q ss_pred             HHHHHHhcCCCCccccC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          249 VFKEVLNMDSAGLNLKD-ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       249 ~v~~Ll~~~gadvn~~d-~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      .++.||+. |.|+|+.= .+-+|+|-+|+..|+.++|.+||.+.+++..+-..|.|||+-++..|..++=++|+..|++.
T Consensus       907 at~~ll~~-gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  907 ATLSLLQP-GSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HHHHHhcc-cchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            99999996 89999874 46789999999999999999999999999999999999999999999999999999999887


Q ss_pred             c
Q 014994          328 N  328 (415)
Q Consensus       328 ~  328 (415)
                      +
T Consensus       986 n  986 (2131)
T KOG4369|consen  986 N  986 (2131)
T ss_pred             c
Confidence            5

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=9e-21  Score=169.50  Aligned_cols=126  Identities=20%  Similarity=0.253  Sum_probs=113.7

Q ss_pred             CCCCCCccccHHHHHHHhcCCHHHHHHHHHCC--CC---CCCCchHHHHHHHC-----CCHHHHHHHHhcCCCCcccc-C
Q 014994          197 EVDPMHAKIVRRIHKALHSDDVELLKLLLDVS--NV---TLDDAYALHYAAAC-----CSPKVFKEVLNMDSAGLNLK-D  265 (415)
Q Consensus       197 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~---~~~g~tpL~~A~~~-----g~~~~v~~Ll~~~gadvn~~-d  265 (415)
                      .+|..|.+|+|+||||+..++.++|+.||+.|  ++   |.-|+||+++|+..     .+..+|..|+.-  .|||++ .
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m--gnVNaKAs  337 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM--GDVNAKAS  337 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc--cCcchhhh
Confidence            45667789999999999999999999999999  65   46799999998864     367889999874  699988 5


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       266 ~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      ..|.|+|++|+.+|+.++|+.||..|||||++|.+|-|+|++|+.+||.+++++|+...
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccC
Confidence            68999999999999999999999999999999999999999999999999999999753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=6.1e-20  Score=147.88  Aligned_cols=115  Identities=23%  Similarity=0.191  Sum_probs=102.9

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHCC-----CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCC
Q 014994          206 VRRIHKALHSDDVELLKLLLDVS-----NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNE  280 (415)
Q Consensus       206 ~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~  280 (415)
                      .-.+.+|+..+....|+.||+..     ..|.+|.||||-|+.+|+.++|..|+.. ||+++++...||||||-||..++
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccc
Confidence            34578999999999999999886     3478999999999999999999999987 89999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcc-hHHHHH
Q 014994          281 PEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK-DYIEAS  321 (415)
Q Consensus       281 ~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~-~v~~l~  321 (415)
                      .+++-+||++|||||+.....+||||+|+...+.. .+.+|+
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHh
Confidence            99999999999999999999999999999876533 344433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=2.7e-20  Score=174.74  Aligned_cols=170  Identities=22%  Similarity=0.206  Sum_probs=142.2

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH--
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS--  177 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a--  177 (415)
                      +.|+||-|+.-.+.+||++|+++|++||..  |..|+||||.|+..|+..++.+++++  ++++...+.+|..|+.++  
T Consensus        73 glTalhq~~id~~~e~v~~l~e~ga~Vn~~--d~e~wtPlhaaascg~~~i~~~li~~--gA~~~avNsdg~~P~dl~e~  148 (527)
T KOG0505|consen   73 GLTALHQACIDDNLEMVKFLVENGANVNAQ--DNEGWTPLHAAASCGYLNIVEYLIQH--GANLLAVNSDGNMPYDLAED  148 (527)
T ss_pred             cchhHHHHHhcccHHHHHHHHHhcCCcccc--ccccCCcchhhcccccHHHHHHHHHh--hhhhhhccCCCCCccccccC
Confidence            789999999999999999999999999997  99999999999999999999999999  777888888888887555  


Q ss_pred             --------HH-----------------HHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C--
Q 014994          178 --------SE-----------------IKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N--  229 (415)
Q Consensus       178 --------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~--  229 (415)
                              ..                 ...-.+...+..|.   ..+..+..|.|.||.|+..|..++.++|++.| +  
T Consensus       149 ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~---~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~  225 (527)
T KOG0505|consen  149 EATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGA---ELDARHARGATALHVAAANGYTEVAALLLQAGYSVN  225 (527)
T ss_pred             cchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccc---cccccccccchHHHHHHhhhHHHHHHHHHHhccCcc
Confidence                    00                 00111112223333   33444456999999999999999999999999 4  


Q ss_pred             -CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHH
Q 014994          230 -VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAAR  277 (415)
Q Consensus       230 -~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~  277 (415)
                       .|.+||||||.|+..|+.++++.|+. +|++++.....|.||+-+|..
T Consensus       226 ~~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  226 IKDYDGWTPLHAAAHWGQEDACELLVE-HGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cccccCCCcccHHHHhhhHhHHHHHHH-hhcccchhhhcCCCCccchhh
Confidence             36899999999999999999997777 599999999999999998865

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=1.2e-19  Score=137.86  Aligned_cols=88  Identities=34%  Similarity=0.507  Sum_probs=78.3

Q ss_pred             HHHHHhcCCHHHHHHHHHCC-CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          209 IHKALHSDDVELLKLLLDVS-NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       209 L~~A~~~g~~~~v~~Ll~~g-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      ||+|+..|+.+++++|++.+ +++. |.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.+|+.+++++|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-GNTALHYAAENGNLEIVKLLLEN-GADINSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-CCCHHHHHHHcCCHHHHHHHHHh-cccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            78999999999999999988 6766 88999999999999999999986 899999999999999999999999999999


Q ss_pred             HhCCCCCCCCC
Q 014994          288 LSKGARASETT  298 (415)
Q Consensus       288 l~~Gadin~~d  298 (415)
                      +++|++++.+|
T Consensus        79 l~~g~~~~~~n   89 (89)
T PF12796_consen   79 LEHGADVNIRN   89 (89)
T ss_dssp             HHTTT-TTSS-
T ss_pred             HHcCCCCCCcC
Confidence            99999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=4.1e-19  Score=162.85  Aligned_cols=152  Identities=11%  Similarity=0.033  Sum_probs=124.0

Q ss_pred             cCCCh-hHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHH
Q 014994          132 VEDVL-PILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIH  210 (415)
Q Consensus       132 ~~~g~-t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  210 (415)
                      |..|. ++||.|+..|+.+++++|++.  |++++..+.                               ..+..|.||||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~-------------------------------~sd~~g~TpLh   75 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKL--GADPEAPFP-------------------------------LSENSKTNPLI   75 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHC--CCCccccCc-------------------------------ccCCCCCCHHH
Confidence            56654 567778888999999999998  545543321                               02357999999


Q ss_pred             HHHhcCCHHHHHHHHHCC-CCCC----CCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHH
Q 014994          211 KALHSDDVELLKLLLDVS-NVTL----DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMV  285 (415)
Q Consensus       211 ~A~~~g~~~~v~~Ll~~g-~~~~----~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~  285 (415)
                      +|+..|+.+++++|+++| ++|.    .|.||||+|+..|+.++++.|+.. |+++|.+|..|+||||+|+..++.+++.
T Consensus        76 ~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~~~  154 (300)
T PHA02884         76 YAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFLAF  154 (300)
T ss_pred             HHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhHHH
Confidence            999999999999999999 6653    589999999999999999999986 9999999999999999999999999886


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCC
Q 014994          286 TLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQ  325 (415)
Q Consensus       286 ~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~  325 (415)
                      ++.  |+.   .+..+.+|++++   ++.+++++|+.++.
T Consensus       155 ~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        155 MIC--DNE---ISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             Hhc--CCc---ccccccChhhhh---ccHHHHHHHHHHHH
Confidence            665  332   466778899875   46788888888775

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.78  E-value=7.8e-20  Score=182.59  Aligned_cols=227  Identities=13%  Similarity=0.017  Sum_probs=187.9

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHH
Q 014994           97 VNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEV  176 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~  176 (415)
                      +..+.++|.+|+..|+..+|+.|+++.+++... .|..+.|+|.+|+..|..++|++|+..  +++-..++...+|||.+
T Consensus       787 dkkgf~plImaatagh~tvV~~llk~ha~veaQ-sdrtkdt~lSlacsggr~~vvelLl~~--gankehrnvsDytPlsl  863 (2131)
T KOG4369|consen  787 DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQ-SDRTKDTMLSLACSGGRTRVVELLLNA--GANKEHRNVSDYTPLSL  863 (2131)
T ss_pred             ccccchhhhhhcccCchHHHHHHHhhhhhhhhh-cccccCceEEEecCCCcchHHHHHHHh--hccccccchhhcCchhh
Confidence            455788999999999999999999999999875 588999999999999999999999998  66777888899999999


Q ss_pred             HHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC----CCCchHHHHHHHCCCHHHH
Q 014994          177 SSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT----LDDAYALHYAAACCSPKVF  250 (415)
Q Consensus       177 a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~g~~~~v  250 (415)
                      |..-+...+ ..++..|+.++... ..+.|.+||++|..+||.+.++.||+.| ++|    .+.+|+|-.|+..|+.++|
T Consensus       864 a~Sggy~~iI~~llS~GseInSrt-gSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv  942 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRT-GSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVV  942 (2131)
T ss_pred             hcCcchHHHHHHHhhccccccccc-ccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHH
Confidence            966666655 33445554433322 3467899999999999999999999999 665    3567888888888888888


Q ss_pred             HHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCC-----------------------------------C
Q 014994          251 KEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARA-----------------------------------S  295 (415)
Q Consensus       251 ~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadi-----------------------------------n  295 (415)
                      ..||.. .+++..+-..|-|||+-++..|.+++-++||..|||+                                   .
T Consensus       943 ~lLLa~-~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~ 1021 (2131)
T KOG4369|consen  943 FLLLAA-QANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVR 1021 (2131)
T ss_pred             HHHHHH-hhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCcccee
Confidence            888876 5888888888888888888888888888888887764                                   3


Q ss_pred             CCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          296 ETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       296 ~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ++|++|.|+|.+|+.-|+...+.+|++.++++-
T Consensus      1022 v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d 1054 (2131)
T KOG4369|consen 1022 VPNKKGCTVLWLASAGGALSSCPILVSSVADAD 1054 (2131)
T ss_pred             cccCCCCcccchhccCCccccchHHhhcccChh
Confidence            456788899999999999999999999988873

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=1.9e-18  Score=170.02  Aligned_cols=190  Identities=18%  Similarity=0.218  Sum_probs=156.5

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhC---------CCcccccccCCChhHHHHHHHcCc---HHHHHHHHHhhcCCCCCcc
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWL---------LGMVGKALVEDVLPILVAAFHCQL---NMLRSYCIQRIAGSNLDNF  166 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g---------~~~~~~~~~~~g~t~L~~A~~~g~---~~lv~~ll~~~~~~~~~~~  166 (415)
                      +-...+..|...+..+....+...+         .+++.+  ...|.|.||.|..+.+   .+++..|++...+      
T Consensus       100 ~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R--Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~------  171 (782)
T KOG3676|consen  100 FDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER--GATGETLLHKALLNLSDGHNELARVLLEIFPK------  171 (782)
T ss_pred             cchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccc--cchhhhHHHHHHhcCchhHHHHHHHHHHHhHH------
Confidence            3346788888888888877666655         455554  6679999999998544   6888888886321      


Q ss_pred             ccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCCC-------------
Q 014994          167 CLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVTL-------------  232 (415)
Q Consensus       167 ~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~-------------  232 (415)
                             |-.     ..            ..  .-...|.||||.|+.+.+.++|++|++.| ||+.             
T Consensus       172 -------lin-----d~------------~~--~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk  225 (782)
T KOG3676|consen  172 -------LIN-----DI------------YT--SEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQK  225 (782)
T ss_pred             -------Hhh-----hh------------hh--hHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccccc
Confidence                   000     00            00  01247999999999999999999999999 6531             


Q ss_pred             -------------CCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCC--CCCC
Q 014994          233 -------------DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGAR--ASET  297 (415)
Q Consensus       233 -------------~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gad--in~~  297 (415)
                                   .|..||.+||..++.+++++|++. |||+|++|.+|+|.||..+..-..+|..++|++|++  ..++
T Consensus       226 ~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~-gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~  304 (782)
T KOG3676|consen  226 ASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH-GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVR  304 (782)
T ss_pred             ccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc-CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence                         257899999999999999999995 999999999999999999999999999999999999  9999


Q ss_pred             CCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          298 TSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       298 d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                      |..|-|||.+|+..|..++.+.+++.
T Consensus       305 N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  305 NNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             ccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999999999999999999988

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=7.7e-18  Score=127.85  Aligned_cols=86  Identities=29%  Similarity=0.360  Sum_probs=80.8

Q ss_pred             HHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchH
Q 014994          238 LHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDY  317 (415)
Q Consensus       238 L~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v  317 (415)
                      ||+||..|+.++++.|++. +.+++.    |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7999999999999999995 888887    99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcc
Q 014994          318 IEASKQGQETN  328 (415)
Q Consensus       318 ~~l~~~g~~~~  328 (415)
                      +.|++.|.+++
T Consensus        76 ~~Ll~~g~~~~   86 (89)
T PF12796_consen   76 KLLLEHGADVN   86 (89)
T ss_dssp             HHHHHTTT-TT
T ss_pred             HHHHHcCCCCC
Confidence            99999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=2.7e-17  Score=132.63  Aligned_cols=120  Identities=27%  Similarity=0.322  Sum_probs=111.2

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHH
Q 014994          201 MHAKIVRRIHKALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAA  276 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~  276 (415)
                      +|.+|.||||+|+..|+.+++++|++.| +   .+..|.||||+|+..++.++++.|+.. |++++..+..|.||+|+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHH
Confidence            4467999999999999999999999999 3   357889999999999999999999986 8999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHH
Q 014994          277 RRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEAS  321 (415)
Q Consensus       277 ~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~  321 (415)
                      ..++.+++++|+++|.+++..+..|.||+++|...++.+.++.|+
T Consensus        82 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999999999999999999999888887763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=4e-17  Score=117.69  Aligned_cols=101  Identities=21%  Similarity=0.297  Sum_probs=92.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHCC-CCC--CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHH
Q 014994          207 RRIHKALHSDDVELLKLLLDVS-NVT--LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEV  283 (415)
Q Consensus       207 t~L~~A~~~g~~~~v~~Ll~~g-~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~  283 (415)
                      --+.|++++|.++-|+-....| ++|  ..|++|||||+-+|+.+++.+|+.. |++++.+|+.|-|||..|+..||.++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHHHHHHHhhHHH
Confidence            3578999999999999999999 776  4789999999999999999999997 99999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCcHHHHH
Q 014994          284 MVTLLSKGARASETTSDGQTAVAIC  308 (415)
Q Consensus       284 v~~Ll~~Gadin~~d~~g~tpL~~A  308 (415)
                      |++||++|||-.....+|.+.+..+
T Consensus        83 VklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999999998877644

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.68  E-value=3.5e-17  Score=142.37  Aligned_cols=113  Identities=18%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCC
Q 014994          123 LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMH  202 (415)
Q Consensus       123 g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~  202 (415)
                      .-|.|.-  |..|.+|||+|++.|+..+++.|+..  ++.                                   +|..+
T Consensus        24 ehdln~g--ddhgfsplhwaakegh~aivemll~r--gar-----------------------------------vn~tn   64 (448)
T KOG0195|consen   24 EHDLNVG--DDHGFSPLHWAAKEGHVAIVEMLLSR--GAR-----------------------------------VNSTN   64 (448)
T ss_pred             ccccccc--cccCcchhhhhhhcccHHHHHHHHhc--ccc-----------------------------------ccccc
Confidence            3344443  55666666666666666666666665  211                                   22222


Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHH
Q 014994          203 AKIVRRIHKALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVA  275 (415)
Q Consensus       203 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A  275 (415)
                      ....||||+|+..||-++|+.||+.. +   +|..|.|||||||..|+..+.+-|+.. |+-++..+++|.|||..|
T Consensus        65 mgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~-ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   65 MGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISC-GAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             CCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhc-cceeeecccCCCCchhhh
Confidence            33456666666666666666666655 3   345666777777777666666666664 666776677777776655

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.63  E-value=1.1e-14  Score=130.20  Aligned_cols=124  Identities=29%  Similarity=0.287  Sum_probs=115.2

Q ss_pred             CCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCC-----HHHHHHHHhcCCC---CccccCCC
Q 014994          200 PMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCS-----PKVFKEVLNMDSA---GLNLKDAR  267 (415)
Q Consensus       200 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~ga---dvn~~d~~  267 (415)
                      ..+..+.++++.++..+..+++++|+..| ++   |..|.||||+|+..|+     .++++.||.. |+   +.+.+|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCccccCCC
Confidence            34556899999999999999999999999 44   5789999999999999     9999999996 78   66677999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       268 g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      |+||||+|+..|+.+++++|++.|++++..+..|.||+++|+..++...+..+...+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999986

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.62  E-value=1.2e-14  Score=117.01  Aligned_cols=119  Identities=29%  Similarity=0.286  Sum_probs=105.5

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +.+|.||||+|+..|+.++++++++.+.  +.                                   +..+..|.||||.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~--~~-----------------------------------~~~~~~g~~~l~~   46 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGA--DV-----------------------------------NAKDNDGRTPLHL   46 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCC--CC-----------------------------------CccCCCCCcHHHH
Confidence            6779999999999999999999998732  11                                   2355678999999


Q ss_pred             HHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      |+..++.+++++|++.| .   .+..|.||+|+|+..++.+++++|+.. |.+++..+..|.|||++|...++.+++++|
T Consensus        47 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          47 AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            99999999999999998 3   356789999999999999999999986 899999999999999999999999999988


Q ss_pred             H
Q 014994          288 L  288 (415)
Q Consensus       288 l  288 (415)
                      +
T Consensus       126 l  126 (126)
T cd00204         126 L  126 (126)
T ss_pred             C
Confidence            5

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.61  E-value=1.6e-15  Score=109.47  Aligned_cols=89  Identities=20%  Similarity=0.181  Sum_probs=83.7

Q ss_pred             HHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcch
Q 014994          237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKD  316 (415)
Q Consensus       237 pL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~  316 (415)
                      -..|++.+|..+-|+..+.. |.+||..- .|+||||+|+-.|+.+++++|+..||+|+.+|+.|-|||-.|+..||..+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~-g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE-GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc-cccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            46799999999999999987 78998764 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCc
Q 014994          317 YIEASKQGQET  327 (415)
Q Consensus       317 v~~l~~~g~~~  327 (415)
                      |++|+..|++-
T Consensus        83 VklLL~~GAdr   93 (117)
T KOG4214|consen   83 VKLLLQNGADR   93 (117)
T ss_pred             HHHHHHcCccc
Confidence            99999999874

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.61  E-value=7.1e-16  Score=105.45  Aligned_cols=55  Identities=38%  Similarity=0.501  Sum_probs=33.6

Q ss_pred             HHhcCC-CCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 014994          253 VLNMDS-AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC  308 (415)
Q Consensus       253 Ll~~~g-advn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A  308 (415)
                      ||+. | +++|.+|..|.||||+|+..|+.++|++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~-~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEH-GPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ------T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCcc-CcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            4565 5 99999999999999999999999999999999999999999999999997

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.52  E-value=2.5e-13  Score=134.28  Aligned_cols=198  Identities=12%  Similarity=0.092  Sum_probs=144.4

Q ss_pred             hhHHHHHHHHH---cCcHHHHHHHHHhCCCcccc---cccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCC
Q 014994           99 YVIELMYASAA---LQMKDRVFLLQHWLLGMVGK---ALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLEREL  172 (415)
Q Consensus        99 ~~~~~L~~A~~---~g~~~~v~~Ll~~g~~~~~~---~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~t  172 (415)
                      .+.|.||.|..   .++.++++.|++.-..+...   ...-.|.||||+|+.+.+.++|.+|++.  ++|++.+....  
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~--gADV~aRa~G~--  217 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA--GADVHARACGA--  217 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc--CCchhhHhhcc--
Confidence            47788999988   35678899888865544221   1134699999999999999999999998  66766543211  


Q ss_pred             hHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHH
Q 014994          173 PDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPK  248 (415)
Q Consensus       173 pl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~  248 (415)
                                +-.......+....+....=..|..||.+||..++.+++++|+++| |+   |..|+|.||..+..-..+
T Consensus       218 ----------FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~  287 (782)
T KOG3676|consen  218 ----------FFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTE  287 (782)
T ss_pred             ----------ccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHH
Confidence                      1000000000001111111235899999999999999999999999 55   678999999999998888


Q ss_pred             HHHHHHhcCCCC--ccccCCCCChHHHHHHHcCCHHHHHHHHhC-C-------------CCCCCCCC--CCCcHHHHHHH
Q 014994          249 VFKEVLNMDSAG--LNLKDARGRTVLHVAARRNEPEVMVTLLSK-G-------------ARASETTS--DGQTAVAICRR  310 (415)
Q Consensus       249 ~v~~Ll~~~gad--vn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-G-------------adin~~d~--~g~tpL~~A~~  310 (415)
                      +-.++|+. |++  ...+|..|-|||.+||..|..+|.+.+++. +             -+.+..|.  +..+.|.+.+.
T Consensus       288 My~~~L~~-ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvy  366 (782)
T KOG3676|consen  288 MYDLALEL-GANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVY  366 (782)
T ss_pred             HHHHHHhc-CCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhc
Confidence            99999985 899  889999999999999999999999999987 2             24444443  34466666655


Q ss_pred             c
Q 014994          311 M  311 (415)
Q Consensus       311 ~  311 (415)
                      .
T Consensus       367 g  367 (782)
T KOG3676|consen  367 G  367 (782)
T ss_pred             C
Confidence            4

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=3.7e-14  Score=96.42  Aligned_cols=54  Identities=33%  Similarity=0.471  Sum_probs=32.9

Q ss_pred             CchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014994          234 DAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLL  288 (415)
Q Consensus       234 g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll  288 (415)
                      |+||||+|+..|+.+++++|++. |+|+|.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45677777777777777777665 6777777667777777777777777776665

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.50  E-value=9.7e-14  Score=142.69  Aligned_cols=104  Identities=24%  Similarity=0.238  Sum_probs=95.8

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCH
Q 014994          206 VRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEP  281 (415)
Q Consensus       206 ~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~  281 (415)
                      .+.|+.|+..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|+.. |+|+|.+|..|+||||+|+..|+.
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCcH
Confidence            35689999999999999999999 54   57899999999999999999999996 999999999999999999999999


Q ss_pred             HHHHHHHhC-------CCCCCCCCCCCCcHHHHHHH
Q 014994          282 EVMVTLLSK-------GARASETTSDGQTAVAICRR  310 (415)
Q Consensus       282 ~~v~~Ll~~-------Gadin~~d~~g~tpL~~A~~  310 (415)
                      +++++|+++       |++++..+..|.+|+..+..
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhhh
Confidence            999999999       99999999999988876654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.50  E-value=4.1e-14  Score=96.20  Aligned_cols=54  Identities=30%  Similarity=0.311  Sum_probs=46.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHH
Q 014994          268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEAS  321 (415)
Q Consensus       268 g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~  321 (415)
                      |+||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999875

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.49  E-value=2.4e-13  Score=118.55  Aligned_cols=119  Identities=22%  Similarity=0.150  Sum_probs=108.9

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHHCC----CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCcccc-CCCCChHHHHHHHc
Q 014994          204 KIVRRIHKALHSDDVELLKLLLDVS----NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK-DARGRTVLHVAARR  278 (415)
Q Consensus       204 ~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~-d~~g~TpLh~A~~~  278 (415)
                      .-..||.-++..|+.+....||+.-    .+|..|.|+|..|+..|+.++|+.||+. |+|||.. +..+.||||.|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccccccHHHHHHHc
Confidence            3568999999999999999999865    4578999999999999999999999995 9999966 56889999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          279 NEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       279 ~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                      |+.++.++|++.||.+...|.-|+|+-..|+.-|+.+.|.++++.
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999999999999999999999999887654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=2e-13  Score=140.46  Aligned_cols=87  Identities=26%  Similarity=0.253  Sum_probs=84.5

Q ss_pred             hHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcc
Q 014994          236 YALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK  315 (415)
Q Consensus       236 tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~  315 (415)
                      ++|+.|+..|+.+.++.|+.. |+|+|.+|..|+||||+|+.+|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            469999999999999999986 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhc
Q 014994          316 DYIEASKQ  323 (415)
Q Consensus       316 ~v~~l~~~  323 (415)
                      ++++|+.+
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            99999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=1.4e-13  Score=128.93  Aligned_cols=111  Identities=23%  Similarity=0.246  Sum_probs=77.5

Q ss_pred             HHHHHhcCCHHHHHHHHHCC----CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHH
Q 014994          209 IHKALHSDDVELLKLLLDVS----NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVM  284 (415)
Q Consensus       209 L~~A~~~g~~~~v~~Ll~~g----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v  284 (415)
                      |.-|+..|..++|+..+..-    ..|..|-|+||-|+..||.+||++||.. |+|||+.|.+||||||+|+.-+++.++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEF-GANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhc-CCcccCccCCCCchhhhhhhcCchHHH
Confidence            34467777778777776654    3366777888888888888888888875 788888888888888888888888888


Q ss_pred             HHHHhCCCCCCCCC-CCCCcHHHHHHH--cCCcchHHHH
Q 014994          285 VTLLSKGARASETT-SDGQTAVAICRR--MTRRKDYIEA  320 (415)
Q Consensus       285 ~~Ll~~Gadin~~d-~~g~tpL~~A~~--~~~~~~v~~l  320 (415)
                      +.|++.|+-|-... .++.||..-+-.  .|...+.++|
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHH
Confidence            88888877665544 566777665533  3344444443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=9.3e-13  Score=117.56  Aligned_cols=122  Identities=26%  Similarity=0.278  Sum_probs=103.9

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +..+.++++.|+..+...++.+++..  +.+                                   ++.++..|.||||+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~-----------------------------------~~~~~~~g~t~l~~  112 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLAS--GAD-----------------------------------VNAKDADGDTPLHL  112 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHc--CCC-----------------------------------cccccCCCCcHHHH
Confidence            55677888888888888877777765  322                                   23455678888888


Q ss_pred             HHhcCC-----HHHHHHHHHCCC---C----CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcC
Q 014994          212 ALHSDD-----VELLKLLLDVSN---V----TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRN  279 (415)
Q Consensus       212 A~~~g~-----~~~v~~Ll~~g~---~----~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~  279 (415)
                      |+..|+     .+++++|++.|.   .    |..|.||||+|+..|+.+++..|+.. |++++..+..|.|+|++|+..+
T Consensus       113 a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~  191 (235)
T COG0666         113 AALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNG  191 (235)
T ss_pred             HHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc-CCCCcccccCCCcchhhhcccc
Confidence            888888     999999999984   2    57899999999999999999999997 8999999999999999999999


Q ss_pred             CHHHHHHHHhCC
Q 014994          280 EPEVMVTLLSKG  291 (415)
Q Consensus       280 ~~~~v~~Ll~~G  291 (415)
                      +.++++.|++.+
T Consensus       192 ~~~~~~~l~~~~  203 (235)
T COG0666         192 RIELVKLLLDKG  203 (235)
T ss_pred             hHHHHHHHHhcC
Confidence            999999999976

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1e-12  Score=123.28  Aligned_cols=90  Identities=19%  Similarity=0.151  Sum_probs=84.7

Q ss_pred             HHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchH
Q 014994          238 LHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDY  317 (415)
Q Consensus       238 L~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v  317 (415)
                      |.=|+..|..++|+..+.. --|+...+..|-||||-|+-.||.+||++||+.|+|||..|.+||||||+|+..++.-++
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            4558889999999999987 489999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcc
Q 014994          318 IEASKQGQETN  328 (415)
Q Consensus       318 ~~l~~~g~~~~  328 (415)
                      +.|.+.|+-.+
T Consensus       633 kqLVe~Gaavf  643 (752)
T KOG0515|consen  633 KQLVESGAAVF  643 (752)
T ss_pred             HHHHhccceEE
Confidence            99999998775

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.34  E-value=9.8e-13  Score=89.84  Aligned_cols=45  Identities=33%  Similarity=0.384  Sum_probs=29.5

Q ss_pred             CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHH
Q 014994          230 VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVA  275 (415)
Q Consensus       230 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A  275 (415)
                      .|..|.||||+||..|+.+++++||. .|+|++.+|..|+||||+|
T Consensus        12 ~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   12 QDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            35788999999999999999999995 5999999999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.28  E-value=3e-11  Score=105.65  Aligned_cols=92  Identities=22%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             CCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChH
Q 014994          197 EVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTV  271 (415)
Q Consensus       197 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~Tp  271 (415)
                      .+|..|..|.|+|..|+..|+.++|++||+.| |+|    ..+.||||+||..|+.++.+.|++. |+.....|.-|+|+
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlllda-Ga~~~~vNsvgrTA  115 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDA-GARMYLVNSVGRTA  115 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhc-cCccccccchhhhH
Confidence            35567789999999999999999999999999 776    3568999999999999999999997 99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHh
Q 014994          272 LHVAARRNEPEVMVTLLS  289 (415)
Q Consensus       272 Lh~A~~~~~~~~v~~Ll~  289 (415)
                      -.+|+.-|+.++|..+-.
T Consensus       116 aqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  116 AQMAAFVGHHECVAIINN  133 (396)
T ss_pred             HHHHHHhcchHHHHHHhc
Confidence            999999999999987643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.09  E-value=8.6e-11  Score=109.24  Aligned_cols=92  Identities=22%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHc
Q 014994          233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK-GARASETTSDGQTAVAICRRM  311 (415)
Q Consensus       233 ~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-Gadin~~d~~g~tpL~~A~~~  311 (415)
                      ++..++++|+..|+...++.+.-. |.|++.+|.+.+|+||+||..|+++++++||+. +.|++.+|.+|+|||+-|...
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            345789999999999999998886 899999999999999999999999999999997 999999999999999999999


Q ss_pred             CCcchHHHHHhcCC
Q 014994          312 TRRKDYIEASKQGQ  325 (415)
Q Consensus       312 ~~~~~v~~l~~~g~  325 (415)
                      +|.+++++|-+.-.
T Consensus       584 ~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  584 KHKEVVKLLEEAQY  597 (622)
T ss_pred             CcHHHHHHHHHHhc
Confidence            99999999987654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.06  E-value=2e-10  Score=67.06  Aligned_cols=30  Identities=37%  Similarity=0.518  Sum_probs=26.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 014994          267 RGRTVLHVAARRNEPEVMVTLLSKGARASE  296 (415)
Q Consensus       267 ~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~  296 (415)
                      +|+||||+||..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            588999999999999999999999998874

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.05  E-value=6.7e-10  Score=103.83  Aligned_cols=86  Identities=23%  Similarity=0.212  Sum_probs=76.4

Q ss_pred             HHHHHHHCCCHHHHHHHHhcCCCCccccCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcc
Q 014994          237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDA-RGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK  315 (415)
Q Consensus       237 pL~~A~~~g~~~~v~~Ll~~~gadvn~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~  315 (415)
                      -||..++.|+.++.-.||.. ||++|..+. .|.||||+|+..|+..-+++|+=+|||++..|.+|.||+.+|...||..
T Consensus       136 QLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            58999999999988888886 899998865 7899999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHhc
Q 014994          316 DYIEASKQ  323 (415)
Q Consensus       316 ~v~~l~~~  323 (415)
                      +.+.|.+.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            88887764

>PHA02790 Kelch-like protein; Provisional

Probab=99.04  E-value=3.9e-10  Score=112.28  Aligned_cols=118  Identities=15%  Similarity=0.160  Sum_probs=88.2

Q ss_pred             eeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcccc
Q 014994            4 LLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSAC   83 (415)
Q Consensus         4 ~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~~~   83 (415)
                      +.+-|++||+||+|||+.|||||+||+++..+    ++.++.+..   .  .+..+++..+++|+|||++...       
T Consensus        26 ~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~E----s~~~v~~~~---~--~v~~~~l~~lldy~YTg~l~it-------   89 (480)
T PHA02790         26 IEAIGGNIIVNSTILKKLSPYFRTHLRQKYTK----NKDPVTRVC---L--DLDIHSLTSIVIYSYTGKVYID-------   89 (480)
T ss_pred             EEEcCcEEeeehhhhhhcCHHHHHHhcCCccc----cccceEEEe---c--CcCHHHHHHHHHhheeeeEEEe-------
Confidence            45789999999999999999999999988554    322222210   1  2445699999999999998653       


Q ss_pred             cCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHH
Q 014994           84 VDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSY  153 (415)
Q Consensus        84 ~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~  153 (415)
                                   .+.+.+.|..|...+..++++.+.+...+...   -.++...+.+|-.++..++.+.
T Consensus        90 -------------~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~---~~NCl~i~~~A~~y~~~~L~~~  143 (480)
T PHA02790         90 -------------SHNVVNLLRASILTSVEFIIYTCINFILRDFR---KEYCVECYMMGIEYGLSNLLCH  143 (480)
T ss_pred             -------------cccHHHHHHHHHHhChHHHHHHHHHHHHhhCC---cchHHHHHHHHHHhCHHHHHHH
Confidence                         33478889999999999988877766554434   3567788889999888665544

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.00  E-value=5.5e-10  Score=67.17  Aligned_cols=33  Identities=36%  Similarity=0.588  Sum_probs=28.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 014994          267 RGRTVLHVAARRNEPEVMVTLLSKGARASETTS  299 (415)
Q Consensus       267 ~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~  299 (415)
                      +|+||||+|+..|+.+++++||++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            588999999999999999999999999988764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PHA02713 hypothetical protein; Provisional

Probab=98.94  E-value=3.4e-09  Score=107.21  Aligned_cols=114  Identities=12%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             eeeeec-ccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCc
Q 014994            2 LRLLLR-ANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEV   80 (415)
Q Consensus         2 ~~~~~~-~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~   80 (415)
                      |.|+++ |++||+||+|||++|+||++||+++..++.  ...++.+.++.+.       ++..+++|+|||++.      
T Consensus        28 V~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~--~~~~v~l~~v~~~-------~~~~ll~y~Yt~~i~------   92 (557)
T PHA02713         28 VIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRD--LVTRVNLQMFDKD-------AVKNIVQYLYNRHIS------   92 (557)
T ss_pred             EEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhc--cCceEEeccCCHH-------HHHHHHHHhcCCCCC------
Confidence            456776 899999999999999999999998743210  1245566655555       999999999998641      


Q ss_pred             ccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHH
Q 014994           81 SACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNM  149 (415)
Q Consensus        81 ~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~  149 (415)
                                      .+.+.+.|..|.......+++.+.+.......   ..+....+..|....+.+
T Consensus        93 ----------------~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~---~~NCl~i~~~~~~~~~~~  142 (557)
T PHA02713         93 ----------------SMNVIDVLKCADYLLIDDLVTDCESYIKDYTN---HDTCIYMYHRLYEMSHIP  142 (557)
T ss_pred             ----------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC---ccchHHHHHHHHhccchH
Confidence                            23578889999999999988766665443333   244455555566666543

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.92  E-value=2.3e-09  Score=98.24  Aligned_cols=126  Identities=21%  Similarity=0.352  Sum_probs=88.1

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      |.++++..+||+||.|||+||.|||+++-+++.+    +.     ...+|. ..-.-++|..+|+|+|+|++...     
T Consensus        47 Vtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~E----s~-----q~~ipL-q~t~~eAF~~lLrYiYtg~~~l~-----  111 (620)
T KOG4350|consen   47 VTFVVEDTRFPAHRVILAARSSYFRALLYGGMQE----SH-----QQLIPL-QETNSEAFRALLRYIYTGKIDLA-----  111 (620)
T ss_pred             eEEEEeccccchhhhhHHHHHHHHHHHHhhhhhh----hh-----hccccc-ccccHHHHHHHHHHHhhcceecc-----
Confidence            5689999999999999999999999999988554    22     123343 33335599999999999988652     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQR  157 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~  157 (415)
                                  ....+...+-|-+|-++|..++...+-++...+..   .++--..+-.|-.+.-.++..+++..
T Consensus       112 ------------~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~---~~NvCmifdaA~ly~l~~Lt~~C~mf  172 (620)
T KOG4350|consen  112 ------------GVEEDILLDYLSLAHRYGFIQLETAISEYLKEILK---NENVCMIFDAAYLYQLTDLTDYCMMF  172 (620)
T ss_pred             ------------cchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHc---ccceeeeeeHHHHhcchHHHHHHHHH
Confidence                        23466778889999999998876644444333322   22223335556666667777766543

>PF12313 NPR1_like_C: NPR1/NIM1 like defence protein C terminal; InterPro: IPR021094 This entry represents the NPR1/NIM1 like defence protein, which is found in many plant species []

Probab=98.90  E-value=2.6e-09  Score=88.40  Aligned_cols=50  Identities=58%  Similarity=0.654  Sum_probs=46.6

Q ss_pred             chhhc-ccccchhhhhhcCCchHHHHHHHHHHhhHH-HHHHhhHhHHHhhhh
Q 014994          351 PKKFL-DCDWSDAYLLENGTPEEQNRKRARFMELKE-VQKAFYKDMAEKIVQ  400 (415)
Q Consensus       351 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~e~~~~  400 (415)
                      +++|| ++++++++.+++++++++..+|+||+|+++ +++||+++|+|+.+.
T Consensus       147 LdK~md~ddl~dl~~le~~t~eeq~~Kr~Rf~ELke~v~kAFskDkeE~~~s  198 (207)
T PF12313_consen  147 LDKIMDDDDLPDLAYLEKGTPEEQLVKRMRFMELKEDVQKAFSKDKEEFDRS  198 (207)
T ss_pred             HHHHhccCcchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccc
Confidence            99999 566999999999999999999999999999 999999999998754

The eukaryotic proteins are typically between 251 and 588 amino acids in length. NPR1/NIM1 like defence protein mediates the binding of TGA factors to the as-1 motif, found in the pathogenesis-related PR-1 gene which leads to the transcriptional regulation of the gene defence. Controls the onset of systemic acquired resistance (SAR) [].

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.88  E-value=1.1e-09  Score=108.35  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 014994          230 VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDA-RGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC  308 (415)
Q Consensus       230 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A  308 (415)
                      .|..|+|+||+|+..|...++++||.+ |+|++.+|. .|+||||-|+..|+++++-+||++|+...++|++|.+||++-
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~  126 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFL  126 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHH
Confidence            366788888888888888888888885 888888886 788999988888999988888888888888888888888887


Q ss_pred             HH
Q 014994          309 RR  310 (415)
Q Consensus       309 ~~  310 (415)
                      ++
T Consensus       127 ~r  128 (1267)
T KOG0783|consen  127 SR  128 (1267)
T ss_pred             hh
Confidence            77

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.84  E-value=1.4e-08  Score=95.20  Aligned_cols=88  Identities=18%  Similarity=0.186  Sum_probs=78.4

Q ss_pred             CCccccH------HHHHHHhcCCHHHHHHHHHCC-CCC----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCC
Q 014994          201 MHAKIVR------RIHKALHSDDVELLKLLLDVS-NVT----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGR  269 (415)
Q Consensus       201 ~~~~g~t------~L~~A~~~g~~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~  269 (415)
                      +|.+|.|      -||..++.|+.++.-.||..| ++|    ..|.||||.|+..|+..-+++|+.. |||+++.|.+|.
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY-GAD~~a~d~~Gm  201 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY-GADPGAQDSSGM  201 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc-cCCCCCCCCCCC
Confidence            4455544      489999999999999999999 766    4689999999999999999999985 999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHh
Q 014994          270 TVLHVAARRNEPEVMVTLLS  289 (415)
Q Consensus       270 TpLh~A~~~~~~~~v~~Ll~  289 (415)
                      ||+.+|-..||.++.+-|++
T Consensus       202 tP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHH
Confidence            99999999999998888775

>PHA03098 kelch-like protein; Provisional

Probab=98.83  E-value=1e-08  Score=104.04  Aligned_cols=117  Identities=16%  Similarity=0.334  Sum_probs=87.9

Q ss_pred             eeee--cccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCc
Q 014994            3 RLLL--RANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEV   80 (415)
Q Consensus         3 ~~~~--~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~   80 (415)
                      .+++  +|++||+||+||+++|+||++||.+...      ...+.+.+        ..+++..+|+|+|+|++..     
T Consensus        13 ~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~------~~~i~l~~--------~~~~~~~~l~y~Ytg~~~i-----   73 (534)
T PHA03098         13 SIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK------ENEINLNI--------DYDSFNEVIKYIYTGKINI-----   73 (534)
T ss_pred             EEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC------CceEEecC--------CHHHHHHHHHHhcCCceEE-----
Confidence            4444  9999999999999999999999988733      23444444        3459999999999998744     


Q ss_pred             ccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHH
Q 014994           81 SACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQ  156 (415)
Q Consensus        81 ~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~  156 (415)
                                     ..+.+.++|..|..++..++.+.+.+.......   ..+....+.+|..++..++.+...+
T Consensus        74 ---------------~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~---~~nc~~~~~~a~~~~~~~L~~~~~~  131 (534)
T PHA03098         74 ---------------TSNNVKDILSIANYLIIDFLINLCINYIIKIID---DNNCIDIYRFSFFYGCKKLYSAAYN  131 (534)
T ss_pred             ---------------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHcCcHHHHHHHHH
Confidence                           234477889999999999988776665444323   3556778888999988766655444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.81  E-value=9.1e-09  Score=97.61  Aligned_cols=88  Identities=25%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             HHHHHHHCCCHHHHHHHH-hcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcc
Q 014994          237 ALHYAAACCSPKVFKEVL-NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK  315 (415)
Q Consensus       237 pL~~A~~~g~~~~v~~Ll-~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~  315 (415)
                      |||+++.....+-+..++ ...+..|+.+|..|+||||+|+..|+.+.++.|+.+|||+..+|+.||+|||-|+..|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            488887776666554433 2235677888888888888888888888888888888888888888888888888888877


Q ss_pred             hHHHHHhcC
Q 014994          316 DYIEASKQG  324 (415)
Q Consensus       316 ~v~~l~~~g  324 (415)
                      ++..++.+-
T Consensus       103 ~i~~vlr~~  111 (560)
T KOG0522|consen  103 IITEVLRHL  111 (560)
T ss_pred             HHHHHHHHh
Confidence            776666543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.79  E-value=5.8e-09  Score=97.29  Aligned_cols=91  Identities=29%  Similarity=0.231  Sum_probs=82.7

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHH
Q 014994          201 MHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAA  276 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~  276 (415)
                      .+.++..++++|+..|++..++.+.-.| +.   |.+.+|+||.||..|+.+++++||+..+.|++.+|.+|+|||.-|.
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            3456778999999999999999888887 44   6788999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCC
Q 014994          277 RRNEPEVMVTLLSKG  291 (415)
Q Consensus       277 ~~~~~~~v~~Ll~~G  291 (415)
                      ..+|.+++++|-+.-
T Consensus       582 ~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hcCcHHHHHHHHHHh
Confidence            999999999998863

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.75  E-value=2e-08  Score=95.81  Aligned_cols=90  Identities=22%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             HHHHHHHCCCHHHHHHHHhcCCCC--ccc--cCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 014994          237 ALHYAAACCSPKVFKEVLNMDSAG--LNL--KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       237 pL~~A~~~g~~~~v~~Ll~~~gad--vn~--~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~  312 (415)
                      -|.-|+...+...+.+||. ||..  +|.  .+.+|+||||+||..|++.+.++|+=+|+|+..+|..|+|||.||...|
T Consensus       627 qLl~A~~~~Dl~t~~lLLA-hg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLA-HGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence            3444554445555555554 2432  222  2345566666666666666666666666666666666666666666666


Q ss_pred             CcchHHHHHhcCCCc
Q 014994          313 RRKDYIEASKQGQET  327 (415)
Q Consensus       313 ~~~~v~~l~~~g~~~  327 (415)
                      ..++++.|+.+|..+
T Consensus       706 sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPD  720 (749)
T ss_pred             cHHHHHHHHHcCCCc
Confidence            666666666666553

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.74  E-value=6.7e-08  Score=80.37  Aligned_cols=124  Identities=15%  Similarity=0.158  Sum_probs=79.4

Q ss_pred             eeeec---ccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCC
Q 014994            3 RLLLR---ANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPE   79 (415)
Q Consensus         3 ~~~~~---~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~   79 (415)
                      ++.+.   .+.+|+|+.++||||+||+---.+...+      ...     ..  .++.++++.++++|+||+.+..    
T Consensus        70 k~K~~gns~k~i~AHKfVLAARsD~WkfaN~~deks------e~~-----~~--dDad~Ea~~t~iRWIYTDEidf----  132 (280)
T KOG4591|consen   70 KFKFAGNSDKHIPAHKFVLAARSDFWKFANGGDEKS------EEL-----DL--DDADFEAFHTAIRWIYTDEIDF----  132 (280)
T ss_pred             eEEecCCccccCchhhhhhhhhcchhhhccCCCcch------hhh-----cc--cccCHHHHHHhheeeecccccc----
Confidence            44455   5789999999999999997432222110      111     22  2567779999999999987754    


Q ss_pred             cccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhc
Q 014994           80 VSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIA  159 (415)
Q Consensus        80 ~~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~  159 (415)
                                    +..+.+.......|.++...-+-+.+.+.......   ..++......|-..+-..+..+..+..+
T Consensus       133 --------------k~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~---V~NCIk~Ye~AEe~n~~qL~n~~~eiIA  195 (280)
T KOG4591|consen  133 --------------KEDDEFLLELCELANRFQLELLKERCEKGLGALLH---VDNCIKFYEFAEELNARQLMNVAAEIIA  195 (280)
T ss_pred             --------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh---HhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                          45566777888888888755444455443222222   3455666667776666666666666544


Q ss_pred             C
Q 014994          160 G  160 (415)
Q Consensus       160 ~  160 (415)
                      +
T Consensus       196 ~  196 (280)
T KOG4591|consen  196 G  196 (280)
T ss_pred             h
Confidence            3

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.72  E-value=3.7e-08  Score=99.51  Aligned_cols=118  Identities=23%  Similarity=0.244  Sum_probs=86.7

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      |-|.+++++||+||.||||.||||++||++...++   ...++.+.++-|.       .+..++.|+|||++..      
T Consensus        39 v~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~---~~~~i~l~~v~~~-------~l~~ll~y~Yt~~i~i------  102 (571)
T KOG4441|consen   39 VTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKES---KQKEINLEGVDPE-------TLELLLDYAYTGKLEI------  102 (571)
T ss_pred             EEEEECCeeechHHHHHHhccHHHHHHhcCCcccc---cceEEEEecCCHH-------HHHHHHHHhhcceEEe------
Confidence            45789999999999999999999999999874442   2256666665555       9999999999998854      


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRS  152 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~  152 (415)
                                    ..+.+.+.|-.|...+..++++.+.+....-..   -.+..-...+|-.++..++.+
T Consensus       103 --------------~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~---~~Nclgi~~~a~~~~~~~L~~  156 (571)
T KOG4441|consen  103 --------------SEDNVQELLEAASLLQIPEVVDACCEFLESQLD---PSNCLGIRRFAELHSCTELLE  156 (571)
T ss_pred             --------------chHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCcHHHHH
Confidence                          345678889999999999998866665433222   133334566777777654443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.70  E-value=1.8e-08  Score=58.70  Aligned_cols=30  Identities=27%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhcCCCCccc
Q 014994          233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNL  263 (415)
Q Consensus       233 ~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~  263 (415)
                      +|+||||+||..|+.++|++||+. |+|||.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCCCC
Confidence            467888888888888888888875 777763

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.68  E-value=7.2e-08  Score=91.88  Aligned_cols=114  Identities=25%  Similarity=0.268  Sum_probs=92.5

Q ss_pred             HHHHHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCC--ccccCCCCChHHHHHHHcCCHH
Q 014994          209 IHKALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHVAARRNEPE  282 (415)
Q Consensus       209 L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gad--vn~~d~~g~TpLh~A~~~~~~~  282 (415)
                      +..|+..++.--++-+..+| +   .+.+..|.||+|+..|+-++|+++|.. |-.  ++..|..|.|+||.|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh-~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDH-GPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhc-CCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            34455555543333333444 2   356778999999999999999999985 432  4677899999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          283 VMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       283 ~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                      +.++|++.||.+-..|..|.||-..|-+.|..+...+|-..
T Consensus       949 vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999999999999999999888877654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.64  E-value=4.6e-08  Score=58.68  Aligned_cols=33  Identities=36%  Similarity=0.539  Sum_probs=28.7

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhcCCCCccccCC
Q 014994          233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDA  266 (415)
Q Consensus       233 ~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~  266 (415)
                      +|.||||+|+..|+.+++++||.. |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCCCC
Confidence            488999999999999999999985 899998863

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.62  E-value=8.4e-08  Score=91.70  Aligned_cols=87  Identities=26%  Similarity=0.314  Sum_probs=78.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHCC---CCC-----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcC
Q 014994          208 RIHKALHSDDVELLKLLLDVS---NVT-----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRN  279 (415)
Q Consensus       208 ~L~~A~~~g~~~~v~~Ll~~g---~~~-----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~  279 (415)
                      -|..|+...+...+-+||.+|   .+|     .+|+|+||+||..|+..+.++|+-. |+|+-++|..|+|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhhcc
Confidence            366788888899999999999   333     5789999999999999999999975 9999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCC
Q 014994          280 EPEVMVTLLSKGARAS  295 (415)
Q Consensus       280 ~~~~v~~Ll~~Gadin  295 (415)
                      ..+++..||.+|+...
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999998654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.56  E-value=3.2e-08  Score=98.20  Aligned_cols=79  Identities=22%  Similarity=0.206  Sum_probs=72.0

Q ss_pred             CCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHH
Q 014994          198 VDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVL  272 (415)
Q Consensus       198 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpL  272 (415)
                      .|.+|..|+|+||+|+..|..+++++||++| ++.    ..|+||||-|+..|+++++-.||.. |+....+|+.|.+||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~-g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK-GRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc-CCceEEecccCCCHH
Confidence            5567789999999999999999999999999 553    5799999999999999999999985 999999999999999


Q ss_pred             HHHHH
Q 014994          273 HVAAR  277 (415)
Q Consensus       273 h~A~~  277 (415)
                      ..-+.
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            87765

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.55  E-value=1.7e-07  Score=70.25  Aligned_cols=87  Identities=28%  Similarity=0.417  Sum_probs=64.2

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.+++..|++|+.+++++|+||+.+|.+....+   ....+.+.+.       ..+.|..+++|+|++.+...+    
T Consensus         2 v~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~---~~~~i~l~~~-------~~~~f~~~l~~ly~~~~~~~~----   67 (90)
T smart00225        2 VTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKES---KKSEIYLDDV-------SPEDFRALLEFLYTGKLDLPE----   67 (90)
T ss_pred             eEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccC---CCCEEEecCC-------CHHHHHHHHHeecCceeecCH----
Confidence            45889999999999999999999999998764431   1234444443       345999999999999764421    


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFL  118 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~  118 (415)
                                      ......+..|..++..++++.
T Consensus        68 ----------------~~~~~l~~~a~~~~~~~l~~~   88 (90)
T smart00225       68 ----------------ENVEELLELADYLQIPGLVEL   88 (90)
T ss_pred             ----------------HHHHHHHHHHHHHCcHHHHhh
Confidence                            135567788888888777654

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.53  E-value=9.5e-08  Score=97.87  Aligned_cols=123  Identities=19%  Similarity=0.215  Sum_probs=101.9

Q ss_pred             CCCccccHHHHHHHhcCCHHHHHHHHHC-C----CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHH
Q 014994          200 PMHAKIVRRIHKALHSDDVELLKLLLDV-S----NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHV  274 (415)
Q Consensus       200 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~  274 (415)
                      .....|+|.+|+++..++.-+++.+++- |    ..+.+|..-+|++ ..++.+...+++...|..++.+|..|||||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC-AALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh-hhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3445789999999999999999999995 5    4466677777884 45566777677666799999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCC------CCCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          275 AARRNEPEVMVTLLSKGARASE------TTSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       275 A~~~~~~~~v~~Ll~~Gadin~------~d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                      |+..|+..++..|++.|++.+.      .+..|.|+-.+|..+|+..+-.+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999998886543      345699999999999998887777666

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.52  E-value=2.2e-07  Score=88.61  Aligned_cols=89  Identities=24%  Similarity=0.290  Sum_probs=81.8

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHHCC------CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHH
Q 014994          201 MHAKIVRRIHKALHSDDVELLKLLLDVS------NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHV  274 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~  274 (415)
                      ++.+..|.||+|+..|+-++|+|+|++|      ..+..|.|+||-|+..++..+..+|++. |+.+-..|..|.||-.-
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda-gasl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA-GASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc-chhheecccCCCChHHH
Confidence            4567899999999999999999999999      3478899999999999999999999997 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHhC
Q 014994          275 AARRNEPEVMVTLLSK  290 (415)
Q Consensus       275 A~~~~~~~~v~~Ll~~  290 (415)
                      |-+.|..+.+.||-..
T Consensus       974 aqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHhcCCchHHHHHhhh
Confidence            9999999999998654

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=98.51  E-value=2.7e-07  Score=72.66  Aligned_cols=92  Identities=23%  Similarity=0.344  Sum_probs=67.2

Q ss_pred             eeeeec-ccchhhHHHHHhhccHHHHHHHccCC-CCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCC
Q 014994            2 LRLLLR-ANQWRLIAAYCLSAVKFFRRLLNLRN-DGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPE   79 (415)
Q Consensus         2 ~~~~~~-~~~~~~h~aila~~s~~f~~~f~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~   79 (415)
                      +.+.++ +..|++|+.||+++|+||+.+|.+.. ..+   ...++.+.+       +.++.+..+++|+|+|.+...   
T Consensus        13 ~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~---~~~~i~~~~-------~~~~~~~~~l~~~Y~~~~~~~---   79 (111)
T PF00651_consen   13 VTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKES---TVPEISLPD-------VSPEAFEAFLEYMYTGEIEIN---   79 (111)
T ss_dssp             EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTS---SEEEEEETT-------SCHHHHHHHHHHHHHSEEEEE---
T ss_pred             EEEEECCCEEEeechhhhhccchhhhhcccccccccc---ccccccccc-------ccccccccccccccCCcccCC---
Confidence            457788 89999999999999999999999882 210   112333333       445599999999999876431   


Q ss_pred             cccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           80 VSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        80 ~~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                                      ........+..|..++...+.+.+.+.
T Consensus        80 ----------------~~~~~~~ll~lA~~~~~~~L~~~~~~~  106 (111)
T PF00651_consen   80 ----------------SDENVEELLELADKLQIPELKKACEKF  106 (111)
T ss_dssp             -----------------TTTHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence                            133467889999999999998876543

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=3.6e-07  Score=86.99  Aligned_cols=83  Identities=19%  Similarity=0.258  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHCC------CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCC
Q 014994          207 RRIHKALHSDDVELLKLLLDVS------NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNE  280 (415)
Q Consensus       207 t~L~~A~~~g~~~~v~~Ll~~g------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~  280 (415)
                      -|+|+++.....+-...++...      ..|..|.||||.|+.-|+...++.|+.. |+|+..+|+.||||||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a-~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA-GADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc-CCCccccccccccHHHHHHHcCC
Confidence            3578887776665554433322      2356778888888888888888888876 78888888888888888888888


Q ss_pred             HHHHHHHHhC
Q 014994          281 PEVMVTLLSK  290 (415)
Q Consensus       281 ~~~v~~Ll~~  290 (415)
                      .+++..+|.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            8777766654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.47  E-value=2.6e-07  Score=76.54  Aligned_cols=67  Identities=22%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             CCCccccCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG-ARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       258 gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~G-adin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      +.++|++|..|||||++|+..|+.+.|.+|+.+| ++|.+.|..|.+++.+|-+.|..+.+..|.+.-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            4577888888888888888888888888888887 778888888888888888888877777776643

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.43  E-value=2.1e-07  Score=96.00  Aligned_cols=87  Identities=23%  Similarity=0.282  Sum_probs=78.9

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 014994          233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       233 ~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~  312 (415)
                      .|.|+||.|+..|..-++..||.. |+++|..|..|+||||.+...|+...+..|++.||+.+..+.+|.+||++|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            578999999999999999999986 9999999999999999999999999999999999999999999999999998884


Q ss_pred             CcchHHHH
Q 014994          313 RRKDYIEA  320 (415)
Q Consensus       313 ~~~~v~~l  320 (415)
                      +.+.+-++
T Consensus       734 ~~d~~~l~  741 (785)
T KOG0521|consen  734 NADIVLLL  741 (785)
T ss_pred             cccHHHHH
Confidence            44444333

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.28  E-value=3.8e-06  Score=84.70  Aligned_cols=128  Identities=21%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHh
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALH  214 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  214 (415)
                      +..-...|+..|+.-.|+..++....                                 ..-.+|..|.-|+++|+.|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~---------------------------------~~lninc~d~lGr~al~iai~   71 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAV---------------------------------SKLNINCRDPLGRLALHIAID   71 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccc---------------------------------cccchhccChHhhhceecccc
Confidence            34456788999999889888885221                                 112344566689999999999


Q ss_pred             cCCHHHHHHHHHCC-CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCcc----------ccCCCCChHHHHHHHcCCHHH
Q 014994          215 SDDVELLKLLLDVS-NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLN----------LKDARGRTVLHVAARRNEPEV  283 (415)
Q Consensus       215 ~g~~~~v~~Ll~~g-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn----------~~d~~g~TpLh~A~~~~~~~~  283 (415)
                      +.+.+++++|++++ .+    ..+|.+|+..|....|+.++... .+..          ..-.-+-|||.+||..++.||
T Consensus        72 nenle~~eLLl~~~~~~----gdALL~aI~~~~v~~VE~ll~~~-~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEi  146 (822)
T KOG3609|consen   72 NENLELQELLLDTSSEE----GDALLLAIAVGSVPLVELLLVHF-VDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEI  146 (822)
T ss_pred             cccHHHHHHHhcCcccc----chHHHHHHHHHHHHHHHHHHhcc-cccchhccccccCcccCCCCccHHHHHHHhcchHH
Confidence            99999999999987 33    46899999999999999999742 2211          112346799999999999999


Q ss_pred             HHHHHhCCCCCCCCCCC
Q 014994          284 MVTLLSKGARASETTSD  300 (415)
Q Consensus       284 v~~Ll~~Gadin~~d~~  300 (415)
                      +++||++|+.+...-..
T Consensus       147 l~~Ll~kg~~i~~PH~~  163 (822)
T KOG3609|consen  147 LQCLLTRGHCIPIPHDI  163 (822)
T ss_pred             HHHHHHcCCCCCCCccc
Confidence            99999999988765433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.27  E-value=2.3e-06  Score=78.22  Aligned_cols=63  Identities=24%  Similarity=0.286  Sum_probs=36.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChH
Q 014994          208 RIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTV  271 (415)
Q Consensus       208 ~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~Tp  271 (415)
                      -|..||+.|+.+.|++|++.| ++   |....+||.+|+.+||..+|+.||+. ||-...-..+|.-.
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLen-GAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLEN-GAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHc-CCcccccccCcchh
Confidence            355666666666666666666 33   34455666666666666666666664 55544333344444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.18  E-value=2.1e-05  Score=79.47  Aligned_cols=128  Identities=16%  Similarity=0.079  Sum_probs=100.5

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHHCC-----CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHH
Q 014994          204 KIVRRIHKALHSDDVELLKLLLDVS-----NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVA  275 (415)
Q Consensus       204 ~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A  275 (415)
                      .+.--...|++.|+...|+..++..     ++   |.-|+++|+.|+.+.+.+++++|+.. +..+       .-+|.+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~~-------gdALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSEE-------GDALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC-cccc-------chHHHHH
Confidence            3445567899999999999998875     22   45689999999999999999999985 4444       3489999


Q ss_pred             HHcCCHHHHHHHHhCCCCC----------CCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc----cccccHHHHHH
Q 014994          276 ARRNEPEVMVTLLSKGARA----------SETTSDGQTAVAICRRMTRRKDYIEASKQGQETN----KDRLCIDVLER  339 (415)
Q Consensus       276 ~~~~~~~~v~~Ll~~Gadi----------n~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~----~~~~~~~~~~~  339 (415)
                      +..|.+++|++++.+-...          ...-..+.|||.+|+..+|.++++.|+.+|++.-    ..-.|.+....
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~C~~~  173 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKTCKRE  173 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchHhhhc
Confidence            9999999999999873322          1233567899999999999999999999998874    23345554444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.92  E-value=7.2e-06  Score=84.44  Aligned_cols=99  Identities=19%  Similarity=0.173  Sum_probs=83.6

Q ss_pred             CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHH
Q 014994          229 NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS-KGARASETTSDGQTAVAI  307 (415)
Q Consensus       229 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~Gadin~~d~~g~tpL~~  307 (415)
                      ..+..|++.||+++..++..++..+++-+|-.....|.+|.-.+|+ |..++.+.+-+|+. .|..++.+|..||||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3456899999999999999999999985466666677777778887 55667777766665 599999999999999999


Q ss_pred             HHHcCCcchHHHHHhcCCCcc
Q 014994          308 CRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       308 A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      |+..|+..++..|.+.|+.+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccc
Confidence            999999999999999988764

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.91  E-value=1.7e-05  Score=72.62  Aligned_cols=73  Identities=21%  Similarity=0.140  Sum_probs=65.3

Q ss_pred             chHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 014994          235 AYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC  308 (415)
Q Consensus       235 ~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A  308 (415)
                      .--|..||+.|..+.|+.|++. |.+||++|.+..+||.+|+.-||..+|++||++||-...-..+|...+.-|
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            3468999999999999999995 999999999999999999999999999999999998877667787765443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.83  E-value=1.6e-05  Score=82.31  Aligned_cols=85  Identities=22%  Similarity=0.247  Sum_probs=75.7

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHc
Q 014994          203 AKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR  278 (415)
Q Consensus       203 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~  278 (415)
                      ..|.|+||.|+..|..-++++|+++| ++   |..|.||||.+...|+...+..|+.. |++.++.+.+|.+||++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKR-GADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccc-cccccccCccCcchhhHHhhh
Confidence            35799999999999999999999999 55   56899999999999999999999985 999999999999999999877


Q ss_pred             CCHHHHHHHH
Q 014994          279 NEPEVMVTLL  288 (415)
Q Consensus       279 ~~~~~v~~Ll  288 (415)
                      .+.+++-+|.
T Consensus       733 ~~~d~~~l~~  742 (785)
T KOG0521|consen  733 ANADIVLLLR  742 (785)
T ss_pred             ccccHHHHHh
Confidence            7766665543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.72  E-value=7.6e-05  Score=62.17  Aligned_cols=67  Identities=12%  Similarity=0.004  Sum_probs=51.8

Q ss_pred             CCCCCCccccHHHHHHHhcCCHHHHHHHHHCC--C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCcccc
Q 014994          197 EVDPMHAKIVRRIHKALHSDDVELLKLLLDVS--N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK  264 (415)
Q Consensus       197 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~  264 (415)
                      .+|..|..|+|+++.|+..|..+.|.+|+.+|  .   .|..|.+++.+|-..|+.+++..|.+.+ .+-...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~-~ets~p   75 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND-RETSHP   75 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh-ccCCCc
Confidence            56777888888888888888888888888888  2   2677888888888888888888888763 344333

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=97.71  E-value=0.00013  Score=69.20  Aligned_cols=140  Identities=16%  Similarity=0.158  Sum_probs=95.2

Q ss_pred             eeeec-----ccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCC
Q 014994            3 RLLLR-----ANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPP   77 (415)
Q Consensus         3 ~~~~~-----~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~   77 (415)
                      .++++     .+.+|+|+.++|..|+.|.+||.++..+.   ....+.+.++-|.       +|..+|+|+|++.++.  
T Consensus       118 ~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~---~s~ei~lpdvepa-------aFl~~L~flYsdev~~--  185 (521)
T KOG2075|consen  118 HFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAED---ASLEIRLPDVEPA-------AFLAFLRFLYSDEVKL--  185 (521)
T ss_pred             EEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccc---cCceeecCCcChh-------HhHHHHHHHhcchhhh--
Confidence            45555     36799999999999999999999886552   3466777777777       9999999999977644  


Q ss_pred             CCcccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHH-HHHcCcHHHHHHHHH
Q 014994           78 PEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVA-AFHCQLNMLRSYCIQ  156 (415)
Q Consensus        78 ~~~~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~-A~~~g~~~lv~~ll~  156 (415)
                                        .-+...+.|+.|-++-...+.+.+++. +..+..  ..+-.--|.- |-...+.++++.+++
T Consensus       186 ------------------~~dtvi~tl~~AkKY~VpaLer~CVkf-lr~~l~--~~naf~~L~q~A~lf~ep~Li~~c~e  244 (521)
T KOG2075|consen  186 ------------------AADTVITTLYAAKKYLVPALERQCVKF-LRKNLM--ADNAFLELFQRAKLFDEPSLISICLE  244 (521)
T ss_pred             ------------------hHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhcC--ChHHHHHHHHHHHhhcCHHHHHHHHH
Confidence                              344567788888888776665554442 111111  1222222333 778888999999999


Q ss_pred             hhcCCCCCccccCCCChHH
Q 014994          157 RIAGSNLDNFCLERELPDE  175 (415)
Q Consensus       157 ~~~~~~~~~~~~~g~tpl~  175 (415)
                      .....--+..+.+|.+-..
T Consensus       245 ~id~~~~~al~~EGf~did  263 (521)
T KOG2075|consen  245 VIDKSFEDALTPEGFCDID  263 (521)
T ss_pred             HhhhHHHhhhCccceeehh
Confidence            7655444445555655443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.51  E-value=0.00041  Score=66.10  Aligned_cols=62  Identities=21%  Similarity=0.279  Sum_probs=52.2

Q ss_pred             HHHHHHHHhcCCCCcccc------CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 014994          247 PKVFKEVLNMDSAGLNLK------DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR  309 (415)
Q Consensus       247 ~~~v~~Ll~~~gadvn~~------d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~  309 (415)
                      ...|.+|.+. +++.|..      +..-.|+||+|+..|..++|.+||+.|+|+...|..|.||..++.
T Consensus       404 p~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhc-CCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4566777664 6776533      445679999999999999999999999999999999999999876

>smart00248 ANK ankyrin repeats

Probab=97.45  E-value=0.00024  Score=40.01  Aligned_cols=29  Identities=48%  Similarity=0.622  Sum_probs=22.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCC
Q 014994          267 RGRTVLHVAARRNEPEVMVTLLSKGARAS  295 (415)
Q Consensus       267 ~g~TpLh~A~~~~~~~~v~~Ll~~Gadin  295 (415)
                      .|.||||+|+..++.+++++|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            36788888888888888888888877664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=96.87  E-value=0.0021  Score=56.66  Aligned_cols=63  Identities=21%  Similarity=0.380  Sum_probs=44.3

Q ss_pred             eeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCC
Q 014994            4 LLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLK   74 (415)
Q Consensus         4 ~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~   74 (415)
                      ++....-||+|||++|+|+|||+.+.......      ....+.++-  |..+.-++|+++|.|+|+|..-
T Consensus       135 iiFkeTcfpahRA~laaRCpffK~l~nsd~e~------~ae~i~dik--~ag~dm~~feafLh~l~tgEfg  197 (401)
T KOG2838|consen  135 IIFKETCFPAHRAFLAARCPFFKILANSDEEP------EAEDICDIK--FAGFDMDAFEAFLHSLITGEFG  197 (401)
T ss_pred             eeeeeccchHHHHHHHhhCcchhhhccCCCCc------chhhhhhhh--hhccChHHHHHHHHHHHhcccc
Confidence            34445569999999999999999988776332      122222222  1345567999999999999763

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.63  E-value=0.0021  Score=61.38  Aligned_cols=59  Identities=27%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHCC-CCC---------CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHH
Q 014994          217 DVELLKLLLDVS-NVT---------LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAA  276 (415)
Q Consensus       217 ~~~~v~~Ll~~g-~~~---------~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~  276 (415)
                      -...+++|.+++ +.|         ....|+||+|+..|...+|.+||+. |+|+-.+|..|+||..++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccc
Confidence            367888888887 322         2356999999999999999999997 8999999999999998876

>smart00248 ANK ankyrin repeats

Probab=96.42  E-value=0.0056  Score=34.02  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=14.7

Q ss_pred             CchHHHHHHHCCCHHHHHHHHhcCCCCc
Q 014994          234 DAYALHYAAACCSPKVFKEVLNMDSAGL  261 (415)
Q Consensus       234 g~tpL~~A~~~g~~~~v~~Ll~~~gadv  261 (415)
                      |.||+|+|+..++.++++.|+.. |.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~-~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK-GADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence            44555555555555555555553 4443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=95.57  E-value=0.016  Score=51.32  Aligned_cols=61  Identities=23%  Similarity=0.338  Sum_probs=40.2

Q ss_pred             cchhhHHHHHhhccHHHHHHHccCCCC----CCCC-CC-ccccccc-cccCCCchhHHHHHHHHHHHhcccCCC
Q 014994            9 NQWRLIAAYCLSAVKFFRRLLNLRNDG----SVSE-GK-PKYLLTD-LVPCDGKFGFEAFNDILHYIYTGKLKA   75 (415)
Q Consensus         9 ~~~~~h~aila~~s~~f~~~f~~~~~~----~~~~-~~-~~~~l~~-~~~~~~~~~~~~~~~~L~~ly~g~~~~   75 (415)
                      -++.+|++|+++||+|||.++.....+    +.+. ++ .++.+.+ ++|-      ..--.++.++||+.+..
T Consensus       261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~Pk------afA~i~lhclYTD~lDl  328 (401)
T KOG2838|consen  261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPK------AFAPIFLHCLYTDRLDL  328 (401)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcch------hhhhhhhhhheecccch
Confidence            368999999999999999999754322    1111 12 4556666 3455      12345689999987754

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.98  E-value=0.25  Score=41.58  Aligned_cols=51  Identities=14%  Similarity=-0.048  Sum_probs=39.3

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHh
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQR  157 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~  157 (415)
                      =+|..|+..+-..+++..-+...+-     -...++..-.||+..+.++|.+.-+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qn   98 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQN   98 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhc
Confidence            3678899999999988776664322     13467888999999999999999654

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.63  E-value=0.27  Score=42.74  Aligned_cols=47  Identities=13%  Similarity=0.168  Sum_probs=29.6

Q ss_pred             CHHHHHHHHhCC-CCCCCC---CCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          280 EPEVMVTLLSKG-ARASET---TSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       280 ~~~~v~~Ll~~G-adin~~---d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      +..++++.|+.| +++|.+   -+.|.|-|+-|...++.+++.+|+++|+.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            445666666665 455532   35667777777777777777777777764

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.37  E-value=0.19  Score=43.63  Aligned_cols=90  Identities=22%  Similarity=0.271  Sum_probs=67.8

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHHCCC---CC----CCCchHHHHHHH--CCCHHHHHHHHhcCCCCcccc---CCCCChH
Q 014994          204 KIVRRIHKALHSDDVELLKLLLDVSN---VT----LDDAYALHYAAA--CCSPKVFKEVLNMDSAGLNLK---DARGRTV  271 (415)
Q Consensus       204 ~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~----~~g~tpL~~A~~--~g~~~~v~~Ll~~~gadvn~~---d~~g~Tp  271 (415)
                      .-.++|.+|+..+..+++-+|+.+-.   .|    ..+.--+-|+..  ..+..+++++|...=++||.+   -+.|.|-
T Consensus       178 dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  178 DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            34788999999999999999998751   11    112223334333  336678888888744788865   5789999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCC
Q 014994          272 LHVAARRNEPEVMVTLLSKGAR  293 (415)
Q Consensus       272 Lh~A~~~~~~~~v~~Ll~~Gad  293 (415)
                      |--|...++.+++.+||++||-
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999994

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.41  E-value=0.41  Score=34.50  Aligned_cols=49  Identities=12%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHCCCCCCCCchHHHHHHHCCCHHHHHHHHhcC
Q 014994          206 VRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMD  257 (415)
Q Consensus       206 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  257 (415)
                      ..-+..|+..|+.|+++.+++.+.++   ...+..|+..-+.+++.+|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPD---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccH---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            34568888888888888888765333   45688888888888888888764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.50  E-value=4  Score=34.53  Aligned_cols=157  Identities=11%  Similarity=-0.009  Sum_probs=80.0

Q ss_pred             CcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccc
Q 014994          111 QMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQE  190 (415)
Q Consensus       111 g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~  190 (415)
                      .++++.+.+.+-.-       ..+-...|..|+.++...+++..-+...+      .                       
T Consensus        29 qdp~~FEkCH~l~~-------~c~~~CLl~HAVk~nmL~ILqkyke~L~~------~-----------------------   72 (192)
T PF03158_consen   29 QDPETFEKCHELNN-------SCDMWCLLYHAVKYNMLSILQKYKEDLEN------E-----------------------   72 (192)
T ss_pred             cCHHHHHHHHHhhc-------cCCHHHHHHHHHHcCcHHHHHHHHHHhhc------c-----------------------
Confidence            45666665544321       22334668889999999998888775221      0                       


Q ss_pred             cccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCCCCCCCCchHHHHHHHCCCHHHH---HHHHhcCCCCccccCCC
Q 014994          191 SEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVF---KEVLNMDSAGLNLKDAR  267 (415)
Q Consensus       191 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~g~tpL~~A~~~g~~~~v---~~Ll~~~gadvn~~d~~  267 (415)
                                 -...++.+-.||+..+.++|++.-+.-.+. +-.+-.-.|....+.++.   -.|+-.+...-...|..
T Consensus        73 -----------~~~~q~LFElAC~~qkydiV~WI~qnL~i~-~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~  140 (192)
T PF03158_consen   73 -----------RYLNQELFELACEEQKYDIVKWIGQNLHIY-NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPT  140 (192)
T ss_pred             -----------hhHHHHHHHHHHHHccccHHHHHhhccCCC-CchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHH
Confidence                       013455666677777777777763322111 111233445554444331   11111111111000000


Q ss_pred             --CChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHH
Q 014994          268 --GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEAS  321 (415)
Q Consensus       268 --g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~  321 (415)
                        =..-|.+|+..|-...|.-.|++|-+++.      ++|..|+..++..++..++
T Consensus       141 ~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  141 SLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence              01234566666666666666666666653      5666666666666665544

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.46  E-value=0.79  Score=32.96  Aligned_cols=48  Identities=8%  Similarity=-0.119  Sum_probs=40.4

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHh
Q 014994          101 IELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQR  157 (415)
Q Consensus       101 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~  157 (415)
                      .+.+..|+.+|+.|+++.+++.+ .++        ...+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34589999999999999999765 222        3569999999999999999995

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=87.30  E-value=1.3  Score=41.85  Aligned_cols=63  Identities=16%  Similarity=0.291  Sum_probs=45.8

Q ss_pred             ecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCC
Q 014994            6 LRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKA   75 (415)
Q Consensus         6 ~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~   75 (415)
                      .=|.+|++|+-+|. .|+||.+||.+...++..   ..+.++  |++ -.|.-+++.+++..+|...+..
T Consensus        76 alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~---~iIqle--I~D-p~Id~~al~~a~gsLY~dEveI  138 (488)
T KOG4682|consen   76 ALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSM---NIIQLE--IPD-PNIDVVALQVAFGSLYRDEVEI  138 (488)
T ss_pred             hccceeeeeeeeee-ccHHHHHHhccccChhhC---ceEEEE--cCC-CcccHHHHHHHHhhhhhhheec
Confidence            34788999999985 577999999998665311   223333  344 4577789999999999988755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	415
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR 309
            A +N KD+ GRT LH AA+    E++  L+SKGA  + + SDG+T + + R
Sbjct: 93  GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR 309
           N KD+ GRT LH AA     E++  LLSKGA  + + SDG+T + + R
Sbjct: 97  NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 250 FKEVLNM---DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVA 306
            KEV+ +     A +N KD+ GRT LH AA     EV+  L+SKGA  + + SDG+T + 
Sbjct: 82  HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD 141
Query: 307 ICR 309
           + R
Sbjct: 142 LAR 144

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
           N KD+ G+T LH+AA     EV+  LLS+GA  + + SDG+T + + R 
Sbjct: 97  NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLARE 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	415
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-04
2rfa_A	232	Transient receptor potential cation channel subfa	6e-12
2rfa_A	232	Transient receptor potential cation channel subfa	8e-09
2rfa_A	232	Transient receptor potential cation channel subfa	5e-08
2rfa_A	232	Transient receptor potential cation channel subfa	5e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-07
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	4e-06
2etb_A	256	Transient receptor potential cation channel subfam	9e-05
2etb_A	256	Transient receptor potential cation channel subfam	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	2e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-04

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H+A    ++  L+  LD    V   D     AL++A       + + +    +  LN ++
Sbjct: 78  HEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN 137

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T LH AA +   +++  LL+KGAR      + + A
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 10/100 (10%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           + +AL++ +      L     D+  +T           +     +        S  +  +
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP------SNYVAEQ 69

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
                  LH AA+R     +   L      +     G TA
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTA 109

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 210 HKALHSDDVELLKLLLDVSNVTLD--DAY---ALHYAAACCSPKVFKEVLNMDSAG--LN 262
           + A H    +++++L    N+ L+  +     ALH AA      + + +L   + G   +
Sbjct: 111 YWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL---AKGARTD 167

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           L++   +    +A       ++       A  + + ++    
Sbjct: 168 LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 8/47 (17%), Positives = 11/47 (23%)

Query: 258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           S         G+  +  A    EP     L  +       T    T 
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTN 48

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA---- 292
            L  AA     +   ++L  +   ++ + A G T LH+AA  +  E  + L+        
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

Query: 293 -RASETTSDGQTA 304
              +    +GQTA
Sbjct: 66  EPMTSELYEGQTA 78

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 210 HKALHSDDVE-LLKLLLDVS-NVTLDDAY---ALHYAAACCSPKVFKEVL-----NMDSA 259
             A   +DV+ L KLL      V    A    ALH AA   + +    VL      +   
Sbjct: 8   LLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAA-MVLMEAAPELVFE 66

Query: 260 GLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
            +  +   G+T LH+A       ++  LL++GA
Sbjct: 67  PMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.2 bits (126), Expect = 5e-08
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 21/116 (18%)

Query: 210 HKALHSDDVELLKLLLD--------VSNVTLDDAY-ALHYAAACCSPKVFKEVL------ 254
           H A   D++E   +L++             L +   ALH A    +  + + +L      
Sbjct: 42  HIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101

Query: 255 ------NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
                 ++     +     G   L  AA     E++  L+  GA      S G T 
Sbjct: 102 SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 209 IHKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H A     + ++K LL   ++  + +      LH AA     +V K +L    A +N K
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-AKVNAK 76

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
               +T LH AAR     ++  LL   A  +  T+ G T 
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 4e-11
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A+H ++++++KLLL       +   +    LH AA     +V + +L       N + 
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAES 242

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            +G T LH+AA+    E++  LLSK A  +     G T 
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 281

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A      E++ LLL   +N  L +      LH  A      V   ++      ++   
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATT 308

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T LHVA+     +++  LL   A  +  T  G + 
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 347

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +   E+ K LL     V+    DD   LH AA      + K +L  + A  NL  
Sbjct: 52  HMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN-ANPNLAT 110

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T LH+AAR    E ++ LL K A  +  T  G T 
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP 149

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A     VE +  LL+  ++           LH AA     +V + +L  D A  N   
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAG 176

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T LHVA   N  +++  LL +G        +G T 
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 215

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H       V +  +L+     V   T      LH A+   + K+ K +L    A +N K 
Sbjct: 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKT 341

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G + LH AA++   +++  LL  GA  +E +SDG T 
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.8 bits (146), Expect = 5e-10
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A     V + +LLL      +    +    LH A    +  + K +L       +   
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPA 209

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T LH+AA++N+ EV  +LL  G  A+  +  G T 
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 248

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
            LH A+      + K +L    A  N+ + +  T LH+AAR    EV   LL   A+ + 
Sbjct: 17  PLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75

Query: 297 TTSDGQTA 304
              D QT 
Sbjct: 76  KAKDDQTP 83

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A H  +++L+K LL    DV+  T      LH AA      +   +L    A  N   
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVS 374

Query: 266 ARGRTVLHVAARRNEPEVMVTL---LSKGARASETTSDGQTAVAI 307
           + G T L +A R     V   L     + +    +     +    
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
                    G T LHVA+      ++  LL +GA  + +    +T 
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP 50

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 1e-11
 Identities = 73/425 (17%), Positives = 136/425 (32%), Gaps = 109/425 (25%)

Query: 44  YLLTDLVPCDGKFGFEAF-NDILHYIYT-------GKLKAPPPEV---SACVDDAC--VH 90
             L   +    +   + F  ++L   Y         + + P           D       
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 91  VSCPSSVN---YVIELMYASAALQMKDRVFLLQHWLLGM--VGK-ALVEDVLPILVAAFH 144
           V    +V+     ++L    A L+++    +L     G+   GK  +  DV         
Sbjct: 125 VFAKYNVSRLQPYLKLR--QALLELRPAKNVLID---GVLGSGKTWVALDVC-------- 171

Query: 145 CQLNMLRSYCIQRIAGSNLDNFCL---ERELPDEVSSEIKSL--RVKSNQESEANIAEVD 199
                  SY +Q      +  F L       P+ V   ++ L  ++  N  S ++ +   
Sbjct: 172 ------LSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 200 PMH-----AKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKV----- 249
            +      A++ R +    + +   LL +LL+V N    +A+ L      C  K+     
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENC--LL-VLLNVQNAKAWNAFNLS-----C--KILLTTR 273

Query: 250 FKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK--GARAS----ETTSDGQT 303
           FK+V +     L+       ++ H +      EV  +LL K    R      E  +    
Sbjct: 274 FKQVTDF----LSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPR 328

Query: 304 AVAICRRMTRRKDYIEASKQGQETNKDRL------CIDVLE-REMRRN--SMSRFP---- 350
            ++I     R  D +      +  N D+L       ++VLE  E R+    +S FP    
Sbjct: 329 RLSIIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 351 -PKKFLDCDWSDAYLLENGTPEEQNRKRARFMELKEVQKAFYKDMAEKIVQVCRHPRRRH 409
            P   L   W D          +        + + ++ K     + EK  Q         
Sbjct: 387 IPTILLSLIWFD------VIKSDV------MVVVNKLHK---YSLVEK--QPKESTISIP 429

Query: 410 LLQRK 414
            +  +
Sbjct: 430 SIYLE 434

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 62/440 (14%), Positives = 133/440 (30%), Gaps = 79/440 (17%)

Query: 28  LLNLRNDGSVS-EGKP---KYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSAC 83
           LL LR   +V  +G     K  +   V    K      +  + ++      +P   V   
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPE-TVLEM 201

Query: 84  VDDACVHVSCP--SSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALV--EDVL-PI 138
           +      +     S  ++   +     ++Q + R  L            L+   +V    
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----PYENCLLVLLNVQNAK 257

Query: 139 LVAAF--HCQLNML---RSYCI-QRIAGSNLDNFCLERELPDEVSSEIKSLRVK----SN 188
              AF   C+  +L   R   +   ++ +   +  L+         E+KSL +K      
Sbjct: 258 AWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 189 QESEANIAEVDPMH-AKIVRRIHKAL-HSD-----DVELLKLLLDVSNVTLDDAYALHYA 241
           Q+    +   +P   + I   I   L   D     + + L  +++ S   L+ A      
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 242 AACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDG 301
                  VF    ++ +  L        +++     +++  V+V  L K +   +   + 
Sbjct: 376 DRL---SVFPPSAHIPTILL--------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 302 QT---AVAICRRMTRRKDY------IEASKQGQETNKDRLCIDVLE-----------REM 341
                ++ +  ++    +Y      ++     +  + D L    L+           + +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 342 RRNSMSRFPPKKFLDCDWSDAYLLENGTPEEQNRKRAR-FMELKEVQKAFYKDMAEKIVQ 400
                       FLD  + +  +  + T    +        +LK     FYK     I  
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-----FYKPY---ICD 536

Query: 401 VCRHPRRR-----HLLQRKE 415
                 R        L + E
Sbjct: 537 NDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 69/453 (15%), Positives = 127/453 (28%), Gaps = 165/453 (36%)

Query: 20  SAVKFFRRLLNLRNDGSVSEGKPKYLLT-DLVPCDGKFGFEAFN---------------D 63
           S     RRLL  +            LL    V  + K  + AFN               D
Sbjct: 229 SIQAELRRLLKSKP-------YENCLLVLLNV-QNAKA-WNAFNLSCKILLTTRFKQVTD 279

Query: 64  ILHYIYTGKLKAPPPEVSACVDDA------CVHVSC---PSSVNYVIELMYASAALQMKD 114
            L    T  +      ++   D+        +       P  V        +  A  ++D
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 115 RVFLLQHW-------LLGMVGKAL------------------VEDV-LPILVAAFHCQLN 148
            +    +W       L  ++  +L                       +P ++      L+
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL------LS 393

Query: 149 ML----RSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAK 204
           ++        +  +  + L  + L  + P E +  I S+ ++   + E   A    +H  
Sbjct: 394 LIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA----LHRS 448

Query: 205 IVRR--IHKALHSDDVELLKLLLDVSNVTLDDAY-----ALHYAAACCSPKV--FKEVLN 255
           IV    I K   SDD+    L          D Y       H        ++  F+ V  
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYL----------DQYFYSHIGHHLKNIEHPERMTLFRMVF- 497

Query: 256 MDSAGLNLK--DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTR 313
                L+ +  + + R   H +   N    ++  L                     ++  
Sbjct: 498 -----LDFRFLEQKIR---HDSTAWNASGSILNTLQ--------------------QLKF 529

Query: 314 RKDYIEASKQGQETNKDRLCIDVLEREMRRNSMSRFPPKKFLDCDWSDAYLLENGTPEEQ 373
            K YI         + D       + E   N++  F PK                   E+
Sbjct: 530 YKPYI--------CDNDP------KYERLVNAILDFLPKI------------------EE 557

Query: 374 NRKRARFMELKEVQKAF------YKDMAEKIVQ 400
           N   +++ +L  ++ A         + A K VQ
Sbjct: 558 NLICSKYTDL--LRIALMAEDEAIFEEAHKQVQ 588

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.0 bits (152), Expect = 3e-11
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 210 HKALHSDDVELLKLLL-----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG--LN 262
           H A+ +D   + ++L+     D+     D    L  AA      + ++++   ++   +N
Sbjct: 63  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI---NSHADVN 119

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             D  G++ LH AA  N  +  V LL  GA      +  +T 
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.8 bits (141), Expect = 6e-10
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 219 ELLKLLL----DVSNVTLDDAY-ALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTV 271
            ++   +     + N T      ALH AA        K +L    A    N++D  GRT 
Sbjct: 5   AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL---EASADANIQDNMGRTP 61

Query: 272 LHVAARRNEPEVMVTLLSKGAR-ASETTSDGQTA 304
           LH A   +   V   L+   A        DG T 
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 95

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 57.8 bits (141), Expect = 7e-10
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A       +L+ L++  ++V   D     ALH+AAA  +      VL  + A  ++++
Sbjct: 97  ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA-VVLLKNGANKDMQN 155

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            R  T L +AAR    E    LL   A    T    +  
Sbjct: 156 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 194

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.9 bits (118), Expect = 6e-07
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A   ++V+   +LL    +       +   L  AA   S +   +VL    A  ++ D
Sbjct: 130 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA-KVLLDHFANRDITD 188

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
              R    +A  R   +++  L     
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLLDEYNL 215

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAY-ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           H A+   D E+++LL     D++          LH A    +  V + +L    A    +
Sbjct: 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTAR 221

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              GRT L  A  R  P +   L + GA   E   D  + 
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 58.7 bits (143), Expect = 6e-10
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 237 ALHYAAACCSPKVFKEVLNM--DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARA 294
           ALH A           +L        L+L++  G+T LH+AA   E   +  L + GA  
Sbjct: 12  ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71

Query: 295 SETTSDGQTA 304
                 G TA
Sbjct: 72  LVAERGGHTA 81

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLN 262
           H A+       L  LL        + L +     ALH AA        +++     AG+ 
Sbjct: 14  HLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVL 72

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           + +  G T LH+A R         LL          SD    
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 3/106 (2%)

Query: 202 HAKIVRRI--HKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSA 259
                  +   +  H  D     L                  +        +        
Sbjct: 90  AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149

Query: 260 GLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSD-GQTA 304
            L  ++  G T LHVA    + E++  L   GA  ++     G+T 
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 3/47 (6%)

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARAS---ETTSDGQTA 304
                  G T LH+A        +  LL   A           GQTA
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTA 48

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.7 bits (151), Expect = 4e-11
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 8/103 (7%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY------ALHYAAACCSPKVFKEVL-NMDSAGL 261
           H ++     E+   LL    NV LDD          H A +  + +V K +        L
Sbjct: 41  HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100

Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           N    +G T LH+A  +   EV   L+  GA         Q  
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP 143

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA---R 293
            LH A         +E+L+   + L  KD  GR  LH +      E+   LLSK      
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 294 ASETTSDGQTA 304
                  G T 
Sbjct: 65  DDYPDDSGWTP 75

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 59.0 bits (144), Expect = 3e-10
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A+     E+ + L++  ++V + D +    LH AA+  S K+ + +  +  + +N +D
Sbjct: 112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSK-GARASETTSDGQTA 304
            +G T L  A      +  V L+ K GA      + G  A
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.4 bits (101), Expect = 9e-05
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 210 HKALHSDDVELLKLLLD--VSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           H+A     ++L++LL     S V   D      L +A A         ++    A  +L 
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV 204

Query: 265 DARGRTVLHVAARRN 279
           D +G     VA    
Sbjct: 205 DNKGAKAEDVALNEQ 219

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 268 GRTVLHVAARRNEPEVMVTLL-SKGARASETTSDGQTA 304
               LH A   NE   +  LL SK +   +   DG+  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP 39

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.5 bits (153), Expect = 5e-11
 Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 209 IHKALHSDDVELLKLLL---DVSNVTLDDAYALHYAAACCSPKVFKEV----LNMDSAGL 261
           +  A  +D  ++ K L               ALH A A   PK  K+V    L    A +
Sbjct: 183 LQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK-RKQVAELLLRKG-ANV 240

Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           N K+    T LHVAA R   +VM  L   GA+ +   S GQTA
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.7 bits (151), Expect = 1e-10
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 214 HSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGR 269
           H    ++ +LLL    +V+    D    LH AA      V + +     A +N  D+ G+
Sbjct: 223 HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQ 281

Query: 270 TVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           T LH AA     +    LLS G+  S  +  G TA
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 18/87 (20%), Positives = 28/87 (32%)

Query: 218 VELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAAR 277
           ++L                 L  AA   + +    +L   +   +  D R  T LH+AA 
Sbjct: 8   LDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAG 67

Query: 278 RNEPEVMVTLLSKGARASETTSDGQTA 304
            N   ++  LL  GA        G   
Sbjct: 68  YNRVRIVQLLLQHGADVHAKDKGGLVP 94

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 209 IHKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +  A   ++ +L+ LL  +  N    D      LH AA     ++ + +L    A ++ K
Sbjct: 29  LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG-ADVHAK 87

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           D  G   LH A      EV   LL  GA  +       T 
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A   + V +++LLL    DV          LH A +    +V + +L    A +N  D
Sbjct: 63  HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMD 121

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
               T LH AA +N  EV   LLS GA  +     G++A
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA 160

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A      +++++L      ++ +      ALH AA     +  + +L+   +  ++  
Sbjct: 252 HVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIIS 310

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVA 306
            +G T   +       E +  +LS+      +  D +   A
Sbjct: 311 LQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A      E+ +LLL     V+ + L     LH AA+    +V   +L+   A   L +
Sbjct: 96  HNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG-ADPTLVN 154

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
             G++ + +A      E +       +
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHS 181

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 210 HKALHSDDVELLKLLLDVSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG--LNLK 264
             A    D + L  LL+  +V   D     AL + A   S K  + +     AG  L+ +
Sbjct: 50  WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLA---EAGADLDHR 106

Query: 265 DAR-GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           D R G T LH+AA    PEV+  L+  GA        G TA
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY----ALHYAAACCSPKVFKEVLNMDSAG--LN 262
                    + ++LL +  +++   D      ALH AA    P+V + ++     G  + 
Sbjct: 82  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV---ELGADIE 138

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGAR 293
           ++D RG T L +A    +       +  G R
Sbjct: 139 VEDERGLTALELAREILKTTPKGNPMQFGRR 169

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 9/96 (9%), Positives = 23/96 (23%), Gaps = 12/96 (12%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARG 268
             A            +     + L+    +           + EV       +  K  +G
Sbjct: 149 ELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV----FEYAEVDE-----IVEKRGKG 199

Query: 269 RTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           + V ++   ++  +         A       D +  
Sbjct: 200 KDVEYLVRWKDGGDCEWVKGVHVAEDVA--KDYEDG 233

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
           A+ Y             +       ++  +   T    AAR+ + +  ++ L +      
Sbjct: 16  AMEYLIEWKDGHS-PSWVPSSYIAADV-VSEYETPWWTAARKADEQA-LSQLLEDRDVDA 72

Query: 297 TTSDGQTA 304
              +G+TA
Sbjct: 73  VDENGRTA 80

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 59.8 bits (146), Expect = 9e-11
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 210 HKALHSDDVELLKLLLDVSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG--LNLK 264
             A    D + L  LL+  +V   D     AL + A   S K  + +     AG  L+ +
Sbjct: 49  WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLA---EAGADLDHR 105

Query: 265 DAR-GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           D R G T LH+AA    PEV+  L+  GA        G TA
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY----ALHYAAACCSPKVFKEVLNMDSAG--LN 262
                    + ++LL +  +++   D      ALH AA    P+V + ++     G  + 
Sbjct: 81  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV---ELGADIE 137

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGAR 293
           ++D RG T L +A    +       +  G R
Sbjct: 138 VEDERGLTALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
           A+ Y             +       +   +   T    AAR+ + +  ++ L +      
Sbjct: 15  AMEYLIEWKD-GHSPSWVPSSYIAAD-VVSEYETPWWTAARKADEQA-LSQLLEDRDVDA 71

Query: 297 TTSDGQTA 304
              +G+TA
Sbjct: 72  VDENGRTA 79

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 58.6 bits (143), Expect = 9e-11
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A    D+  ++ LL   S+  + D      LH A      KV + +L    A +N   
Sbjct: 15  HIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTG 73

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            +  + LH AA+    +++  LLS GA  +     G   
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.4 bits (114), Expect = 7e-07
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            + RG T+LH+A+ + +   +  LL  G+  +     G T 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTP 46

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.7 bits (107), Expect = 5e-06
 Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG--LNL 263
           H+A +   +++++LLL     V+     +   LH AA      + K +L   S G   N 
Sbjct: 48  HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL---SYGASRNA 104

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGA 292
            +  G   +      +   +++      +
Sbjct: 105 VNIFGLRPVDYTDDESMKSLLLLPEKNES 133

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 210 HKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGR 269
             A      ELL+  ++   V ++ A               ++ LN            G 
Sbjct: 144 DIAEEEAMEELLQNEVNRQGVDIEAA--RKEEERIMLRDA-RQWLNSGHINDVRHAKSGG 200

Query: 270 TVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           T LHVAA +   EV+  L+      +    DG T 
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP 235

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A  S D E +  LL    D++   +D   ALH A    +  + K ++    A +N  D
Sbjct: 45  LAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPD 103

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
             G   LH AA     ++   L+S+GA      S+G T + I 
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 211 KALHSDDVELLKLLLDVSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKDAR 267
           + +  D  + L       N          ALH AAA    +V K ++      +N+KD  
Sbjct: 175 RIMLRDARQWL--NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYD 231

Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
           G T LH AA   + E    L+            GQTA  +   
Sbjct: 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
                    S     E   +      +K   G      A    + E ++ LL +GA  + 
Sbjct: 11  NEQLKRWIGSETDL-EPPVVKRKKTKVKFDDGAV-FLAACSSGDTEEVLRLLERGADINY 68

Query: 297 TTSDGQTA 304
              DG TA
Sbjct: 69  ANVDGLTA 76

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 7/50 (14%), Positives = 16/50 (32%)

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
           + + DA+ +    +         +   + K  +      DG   +A C  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSS 50

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A      E+LKLL+    DV+    D    LH AA     +    +L  +   +   +
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC-RILVENLCDMEAVN 262

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
             G+T   VA       +      +    SE
Sbjct: 263 KVGQTAFDVADEDILGYLEELQKKQNLLHSE 293

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 22/135 (16%)

Query: 187 SNQESEANIAEVD-----PMHAKIVRRIHKALHSDDVELLKLLLDV-SNVTLDDAY---- 236
           ++ + + +I E+D      +   +     +    D V   KLL++  + V  D A     
Sbjct: 220 NSTKLKGDIEELDRNGMTALMI-VAHNEGR----DQVASAKLLVEKGAKVDYDGAARKDS 274

Query: 237 -------ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS 289
                  ALHYAA   +  + K ++    +  + +D  G+T + +AA+    EV++ L+ 
Sbjct: 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334

Query: 290 KGARASETTSDGQTA 304
           +GA      +   TA
Sbjct: 335 QGASVEAVDATDHTA 349

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 212 ALH---SDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDS------ 258
            LH   +    + + +     ++      +   LH+ A+  S +  ++++  ++      
Sbjct: 97  KLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA 155

Query: 259 -AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            A +N  D    T L +A       ++  L+  GA  +      ++A
Sbjct: 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 6/88 (6%)

Query: 210 HKALHSDDVELLKLLL-----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           H A    ++ ++K L+     +      D    +  AA     +V   ++    A +   
Sbjct: 284 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAV 342

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGA 292
           DA   T   +A   N   ++        
Sbjct: 343 DATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHVAARRNEPEVMVTLLSK---G 291
            L  A      ++   ++    AG    + +   R+ LH AA   +  +MV +L+     
Sbjct: 169 PLMLAVLARRRRLVAYLM---KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 292 ARASETTSDGQTA 304
               E   +G TA
Sbjct: 226 GDIEELDRNGMTA 238

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 6/96 (6%), Positives = 26/96 (27%), Gaps = 8/96 (8%)

Query: 209 IHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARG 268
           + +A +   ++  +  L   ++               +  +  +  + +       +   
Sbjct: 41  LLEASYDGYIKRQRNELQHYSLY-----PNPQGYGNGNDFL-GDFNHTNLQIPTEPEPES 94

Query: 269 RTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              LH  A  +   +   +  +     +     +T 
Sbjct: 95  PIKLHTEAAGSY-AITEPITRESVNIID-PRHNRTV 128

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 5/72 (6%), Positives = 13/72 (18%), Gaps = 10/72 (13%)

Query: 233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
              ++L  A+     K  +          N                    +     +   
Sbjct: 36  SSQHSLLEASYDGYIKRQR----------NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQ 85

Query: 293 RASETTSDGQTA 304
             +E   +    
Sbjct: 86  IPTEPEPESPIK 97

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 237 ALHYAAACCSPKVFKEVLNM---DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGAR 293
            LH A       +  EV+     D A LN ++   +T LH+A   N+PE+   LL  G  
Sbjct: 11  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD 70

Query: 294 ASETTSDGQTA 304
                  G T 
Sbjct: 71  PELRDFRGNTP 81

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAY-ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           H A     + +++LL+    DV+     +   ALH A    +P +   +L    A +N  
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRV 180

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
             +G +   +   R    +   L        +   + +   + 
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 16/106 (15%)

Query: 210 HKALHSDDVELLKLLLDVSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG--LNLK 264
            KAL  + +  +    D++ +   +      LH A     P++ + +L    AG    L+
Sbjct: 20  EKALTMEVIRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL---GAGCDPELR 74

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARAS------ETTSDGQTA 304
           D RG T LH+A  +     +  L               T  +G T 
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVL-----NMDSAG 260
           H A+ ++  E+ + LL    +  L D      LH A           +          + 
Sbjct: 50  HLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETT-SDGQTA 304
           L   +  G T LH+A+      ++  L+S GA  +     +G+TA
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 210 HKALHSDDVELLKLLL-----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG--LN 262
           H A+ +D   + ++L+     D+     D    L  AA      + ++++   ++   +N
Sbjct: 95  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI---NSHADVN 151

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             D  G++ LH AA  N  +  V LL  GA      +  +T 
Sbjct: 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAY-ALHYAAACCSPKVFKEVLNMDSAGLNL 263
            +     D   ++   +     + N T      ALH AA         + L   SA  N+
Sbjct: 27  GNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAA-KRLLEASADANI 85

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGAR-ASETTSDGQTA 304
           +D  GRT LH A   +   V   L+   A        DG T 
Sbjct: 86  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 127

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG--LNL 263
             A       +L+ L++  ++V   D     ALH+AAA  +      +L     G   ++
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL---KNGANKDM 185

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           ++ R  T L +AAR    E    LL   A    T    +  
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 13/81 (16%)

Query: 237 ALHYAAACCSPKVFKEVLNMD----------SAG---LNLKDARGRTVLHVAARRNEPEV 283
            L  A+              +            G    N  D  G T LH+AAR +  + 
Sbjct: 13  PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72

Query: 284 MVTLLSKGARASETTSDGQTA 304
              LL   A A+   + G+T 
Sbjct: 73  AKRLLEASADANIQDNMGRTP 93

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.4 bits (119), Expect = 6e-07
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A   ++V+   +LL    +       +   L  AA   S +  K +L+   A  ++ D
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITD 220

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
              R    +A  R   +++  L  +  
Sbjct: 221 HMDRLPRDIAQERMHHDIVRLLDLEHH 247

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 18/72 (25%), Positives = 25/72 (34%)

Query: 233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
           +    L  AA     +  K++  + S      + R  T LH AA  N   V+  LL  GA
Sbjct: 7   EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66

Query: 293 RASETTSDGQTA 304
                   G   
Sbjct: 67  DVHAKDKGGLVP 78

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A   + V +++ LL   ++V   D      LH A +    +V  E+L    A +N+ D
Sbjct: 47  HFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVAD 105

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
               T LH AA + + E+   LL  GA  ++   DG T 
Sbjct: 106 LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.7 bits (107), Expect = 1e-05
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A      E+ +LL+   + V + D +    LH AAA    ++  ++L    A    K+
Sbjct: 80  HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC-KLLLQHGADPTKKN 138

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
             G T L +    +  ++   L    A
Sbjct: 139 RDGNTPLDLVKDGDT-DIQDLLRGDAA 164

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 212 ALH------SDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDS--- 258
           ALH       + +E++K+L+ + ++ T  D      L  A    + +    +++      
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 259 -AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              L+  + +G + LH A   N  +V +  +  G   +   ++    
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVP 247

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 210 HKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGR 269
           H A+ ++  +L+  L++ +               C   +V +        G ++K  +G+
Sbjct: 89  HLAVMANKTDLVVALVEGAKE--RGQMPESLLNECDEREVNE-------IGSHVKHCKGQ 139

Query: 270 TVLHVAARRNEP--EVMVTLLSKGARASETTSDGQTA 304
           T LH          E++  L+  GA  +      +T 
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP 176

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 18/115 (15%)

Query: 210 HKALHSDDVELLKLLL-----------------DVSNVTLDDAYALHYAAACCSPKVFKE 252
           + ++ +  V L K LL                  V    +     +  AA     +V + 
Sbjct: 249 YLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308

Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
           +       +      G        ++  P V    L+  A     +     + A+
Sbjct: 309 LQEKL-DEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           IH A      + ++ L+      +        ALH A         K +    S G    
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA---SVGEVHS 80

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              G+  +H+A   N+ +++V L+            GQ  
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMP 114

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 13/107 (12%)

Query: 210 HKALHSDDVELLKLLLDVS------NVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG 260
            +A+   + E L L++D         +   +      LH+A       V    + M    
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-ID 236

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGA---RASETTSDGQTA 304
           +N++D      L+++ R     +   LL K       +    +G T 
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
            +H AA        + ++        +++  G T LH+A +    +    L S G   S 
Sbjct: 23  KIHVAARKGQTDEVRRLIETG-VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL 81

Query: 297 TTSDGQTA 304
               GQ  
Sbjct: 82  W--HGQKP 87

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              D      +HVAAR+ + + +  L+  G   +     G TA
Sbjct: 14  IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA 56

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 15/68 (22%), Positives = 24/68 (35%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
            +       +    +  L+     LN  D  G + LH A R     V+  L+ +GAR + 
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 297 TTSDGQTA 304
                 T 
Sbjct: 68  MNRGDDTP 75

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A       ++++L+     ++ +   D   LH AA+     + +++L    A +N  +
Sbjct: 44  HWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVN 102

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G   LH A    + +V   L++ GA  S     G+  
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.1 bits (108), Expect = 8e-06
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A      ++++ LL    D++ V       LHYA      +V ++++    A +++ +
Sbjct: 77  HLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICN 135

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
             G   +  A       +       G 
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAY-ALHYAAACCSPKVFKEVLNMDSAG--LN 262
             AL + D++ +K  +    DV N TL+     LHYAA C   ++ + +L     G  +N
Sbjct: 12  MWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLL---LKGADIN 67

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             D    T L  A        +  LLSKGA  +    DG TA
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY----ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
            KA+ ++DV+L++ LL+  +NV   +       LH A       + + +L    A   L+
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLR 68

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              G T   +AA     +++   LSKGA  +E    G TA
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 210 HKALHSDDVELLKLLLDVS--NVTLDDAY---ALHYAAACCSPKVFKEVLNM-DSAG--L 261
             A     VE+LK+LLD    +V   D     AL +A         + + ++    G  +
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSK-GARASETTSDGQTA 304
           N++  RG+T L +A  +    ++  LL +     ++T SDG+TA
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.9 bits (136), Expect = 6e-09
 Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 18/113 (15%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY-------------ALHYAAACCSPKVFKEVLN 255
            +A     V+ LK L    +NV L                 AL  AA     +V K +L+
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 256 MDSAGLNLKDARGRTVLHVAARRN----EPEVMVTLLSKGARASETTSDGQTA 304
              A +N  D  GR  L  A   +       +   LL  GA  +     G+T 
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG--LNL 263
           H A+     ++++LLL    D      + A     AA   S K+ K  L   S G  +N 
Sbjct: 44  HNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL---SKGADVNE 100

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGA----------RASETTSDGQTA 304
            D  G T    AA   + + +  L  +GA                  G TA
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 151

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 212 ALH--------SDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSA 259
           AL         SD   +  LLLD  ++V +        L  A       + + +L  +  
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 260 GLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
            +N  D+ G+T L +A      ++   L  +GA
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.7 bits (146), Expect = 2e-10
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A     V+L+KLLL   S++ + D      LH+AA      + + +L      L+  +
Sbjct: 116 IWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVN 174

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G + LH+AAR N  + +V  LS+ +  +    +G+T 
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 4e-10
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
            +A  ++ +E +K L+     V     + +  LH AA     +V + +L+     +N +D
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T +  A      +++  LLSKG+  +   ++    
Sbjct: 109 DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC 147

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARA 294
            LH AA      +   ++    AG  ++      RT L  AA  N  E +  L+  GA  
Sbjct: 14  PLHAAAEAGHVDICHMLV---QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70

Query: 295 SETTSDGQTA 304
               ++G T 
Sbjct: 71  DPKDAEGSTC 80

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  S  V++ ++LL    ++   + +    LH AA           L+ D + + LK+
Sbjct: 149 HWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKN 207

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
             G T L  A+  ++    + +     
Sbjct: 208 KEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            ++    R+ LH AA     ++   L+  GA     + D +T 
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTP 47

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 220 LLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLN---MDSAGLNLKDARGRTVLHVAA 276
           ++K          ++  +              E L+   + +  LN +D+ G T L++AA
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291

Query: 277 RRNEPEVMVTLLSKGARASETTSDGQTA 304
           R     ++  LL  GA        G   
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRP 319

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.6 bits (123), Expect = 2e-07
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAA---CCSPKVFKEVLNMDSAGLN 262
           H      ++EL+K L+   SN    D      L  A           F+ +L+     L 
Sbjct: 136 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195

Query: 263 LKDARGRTVLHVAARRN 279
           L+D+  RT+LH     +
Sbjct: 196 LEDSMNRTILHHIIITS 212

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 173 PDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLL-DVSNVT 231
            D +SS +K ++   +     N  ++          + + L  +  E+   L  D SN  
Sbjct: 36  SDFLSSPLKIMKALPSPVVNDNEQKMKLEAF-----LQRLLFPEIQEMPTSLNNDSSNRN 90

Query: 232 LDDAYALHYAAACCSPKVFKEVLNMD-SAGLNL---KDARGRTVLHVAARRNEPEVMVTL 287
            +   +           + +EV +   +  LNL    D  G T LH        E++  L
Sbjct: 91  SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 150

Query: 288 LSKGARASETTSDGQTA 304
           +  G+      + G++ 
Sbjct: 151 VKHGSNRLYGDNMGESC 167

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 193 ANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAY-ALHYAAACCSPKVFK 251
           +++A +D    +      K     D   ++LL +         +  +H AA        +
Sbjct: 19  SHMASMD--GKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLR 76

Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            +++     +N+  A   + LH A        +  LL  GA+ +  T+D  T 
Sbjct: 77  NLISQG-WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP 128

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNL- 263
           IH+A     VE +  L+    ++ +        L+ A         K++L    +G ++ 
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL---ESGADVN 217

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           +     + LH   R    E+   L+  GA      ++G+  
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP 258

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNL-K 264
           H+A     +  +K+LL     V+ VT D    L  A    S      +L     G ++  
Sbjct: 97  HEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL---QHGASVQP 153

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           ++   + +H AARR   E + +L++ G       S   T 
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 193

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           + A  +     +K LL    DV N        LH      S ++   +++   A    K+
Sbjct: 195 YLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKN 252

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETT 298
           A G+  + +    +     + L  +GA   +  
Sbjct: 253 AEGKRPVELVPPESP-LAQLFLEREGASLPKPK 284

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY----ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           H A++++  E ++LLL+  +++   D       L +A    S  + + +L    A +N +
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQ 179

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              G + LH A+ R    ++ TL+  GA +S       T 
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.8 bits (141), Expect = 8e-10
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 237 ALHYAAACCSPKVFKEVLNMDS---AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGAR 293
            LH A    +      ++N+       L++ +   +T LH+A     P V+  L++ GA 
Sbjct: 12  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71

Query: 294 ASETTSDGQTA 304
                  GQTA
Sbjct: 72  PMALDRHGQTA 82

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.2 bits (134), Expect = 7e-09
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 210 HKALHSDDVELLKLLLDVS-NVTLDDAY---ALHYAAACCSPKVFKEVLN---MDSAGLN 262
           H A+ +    +++LL+    +    D +   A H A    SP   + +L+     +  L 
Sbjct: 51  HLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE 110

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASET-TSDGQTA 304
            ++  G T LHVA      E +  LL +GA         G++ 
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP 153

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A+ ++ + +++LLL    +V+      + ALH A+      + + ++    A  +LK+
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKN 213

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
               T L VA  R   +++    ++ A
Sbjct: 214 CHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 4/48 (8%)

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLS----KGARASETTSDGQTA 304
               D  G T LH+A  +     +  L++     G       +  QT 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP 49

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A    D+E L  LL    NV   + +   AL               L +  A  +LKD
Sbjct: 10  ASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA--RRLLLRGANPDLKD 67

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G  V+H AAR    + + TLL   A  +   ++G   
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.6 bits (125), Expect = 3e-08
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 212 ALH---SDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG--LN 262
           AL      + E+ + LL   +N  L D      +H AA        + +L        +N
Sbjct: 41  ALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVN 97

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGAR-ASETTSDGQTA 304
           ++D  G   LH+AA+     V+  L+   A         G TA
Sbjct: 98  IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +  ++ L+ LL+  ++V ++D      LH AA     +V + ++   ++ +  ++
Sbjct: 75  HDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN 134

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
            +G T   +A      EV+  + + GA
Sbjct: 135 HKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.0 bits (100), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 267 RGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
                L  AA R + E + +LL      +     G+TA
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTA 41

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.4 bits (140), Expect = 3e-10
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A         ++LL         T  D   LH AA+     + + +L    A +N KD
Sbjct: 39  HLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKD 97

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
               T LH A   N  EV+  L+  GA     +   +TA
Sbjct: 98  MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.2 bits (129), Expect = 8e-09
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNL-KDARGRTVLHVAARRNEPEVMVTLLSKGARAS 295
            L  AA        + ++   + G     D  G + LH+AA+         LL  G    
Sbjct: 5   KLLEAARAGQDDEVRILM---ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 296 ETTSDGQTA 304
             T   +T 
Sbjct: 62  ARTKVDRTP 70

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A       ++++LL   ++V   D     ALH+A      +V  E+L    A ++ + 
Sbjct: 72  HMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQS 130

Query: 266 ARGRTVLHVAARRNEPEVMVTLL 288
              +T   ++      ++   +L
Sbjct: 131 KFCKTAFDISIDNGNEDL-AEIL 152

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
            +A  +   + +++L+   ++V   D Y    L+ A A    ++  EVL  + A +N  D
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV-EVLLKNGADVNAVD 77

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           A G T LH+AA     E+   LL  GA  +     G+TA
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           + A     +E++++LL   ++V   DA     LH AA     ++  EVL    A +N +D
Sbjct: 52  YLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQD 110

Query: 266 ARGRTVLHVAARRNEPEVMVTLLS 289
             G+T   ++      ++   L  
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQK 134

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
            + A      EL + +L      +    D   ALH+A +    ++  E L      +N K
Sbjct: 11  CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLLQLGVPVNDK 69

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
           D  G + LH+AA     E++  LL KGA  +    +G T +
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL 110

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
             + A +    ++ KE +  D +     D   RT LH A      E++  LL  G   ++
Sbjct: 10  ICNLAYSGKLDEL-KERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 297 TTSDGQTA 304
               G + 
Sbjct: 69  KDDAGWSP 76

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +   E+++ LL +   V   D      LH AA+    ++ K +L    A +N  +
Sbjct: 45  HWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVN 103

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
             G T LH AA +N  E+ V LL  GA          TA+
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H A   +  E+  +LL    +       DA A+H AAA  + K+   +L    A  N++
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQ 168

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
           D  G T LH+A      E    L+++GA       + +T + +
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +   E++K LL     V+ V  +    LHYAA+    ++   +L    A  + KD
Sbjct: 78  HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKD 136

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQ 325
               T +H AA +   +++  LL   A  +   ++G T + +     R ++      QG 
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA 196

Query: 326 ETNK 329
               
Sbjct: 197 SIYI 200

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H+A    +++++ +LL      +    +    LH A      +  K ++    A + ++
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIE 201

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGA 292
           +   +T L VA       +++  L++G 
Sbjct: 202 NKEEKTPLQVAKGGL--GLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              + ++A      E+   +L+  + A+ T  D +TA
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTA 43

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.0 bits (139), Expect = 5e-10
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +  +E++++LL   ++V   D      L  AA     ++ + +L    A +N  D
Sbjct: 52  HLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNAND 110

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T LH+AA     E++  LL  GA  +     G+TA
Sbjct: 111 MEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.6 bits (125), Expect = 4e-08
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
            L  AA        + ++    A +N +DA G T LH+AA     E++  LL  GA  + 
Sbjct: 17  KLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75

Query: 297 TTSDGQTA 304
               G T 
Sbjct: 76  VDHAGMTP 83

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 42.7 bits (102), Expect = 4e-05
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            +   +     L  AAR    + +  L++ GA  +   + G T 
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTP 50

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A     +E++++LL    DV+   ++    LH AA     ++ + +L    A +N +D
Sbjct: 85  RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQD 143

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSK 290
             G+T   ++      ++   L   
Sbjct: 144 KFGKTAFDISIDNGNEDLAEILQKL 168

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 57.0 bits (139), Expect = 6e-10
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A     + +++ LL    D   +      AL  A +     + K +L+     +N  D
Sbjct: 41  MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG-VDVNEYD 99

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T L  A   N  + +  LL  GA  +  T  G  +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 138

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
           ++H  AA          +  +   +N  D  G T L  AA   +  V+  LL  GA    
Sbjct: 6   SVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 297 TTSDGQTA 304
                ++A
Sbjct: 65  LGKGRESA 72

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A      +++K+LLD   +V   D      L YA      K  K +L    A   ++ 
Sbjct: 74  SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIET 132

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSD 300
             G   + +A       V   + S   +  +   +
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.4 bits (101), Expect = 6e-05
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 267 RGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
                +H  A + E   + T + +    + T  +G T 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTP 39

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 56.7 bits (138), Expect = 7e-10
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
            L  AAA    +  + +L+ +    +  +  G+T L V    +   + + LL +GA  + 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGASPNV 63

Query: 297 TTSDGQTA 304
             + G + 
Sbjct: 64  QDTSGTSP 71

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 214 HSDDVELLKLLLDVSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRT 270
              +V  L L  ++ +    + +   AL       +       L    A  N++D  G +
Sbjct: 14  DVQEVRRL-LHRELVHPDALNRFGKTALQVMMFGSTAIA--LELLKQGASPNVQDTSGTS 70

Query: 271 VLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            +H AAR    + +  L+  GA  +     G   
Sbjct: 71  PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.5 bits (122), Expect = 7e-08
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 212 ALH---SDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           AL         +   LL   ++  + D      +H AA        K ++    A +N+ 
Sbjct: 39  ALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVP 97

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           D  G   +H+A +     V V+ L+  +      + G T 
Sbjct: 98  DGTGALPIHLAVQEGHTAV-VSFLAAESDLHRRDARGLTP 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +  ++ LK+L+    DV+      A  +H A       V   +     + L+ +D
Sbjct: 73  HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRD 130

Query: 266 ARGRTVLHVAARRNEPEVMVTLLS 289
           ARG T L +A +R   +++  L  
Sbjct: 131 ARGLTPLELALQRGAQDLVDILQG 154

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 16/134 (11%)

Query: 185 VKSNQESEANIAEVD-----PMHAKIVRRIHKALHSDDVELLKLLL----DVSNVTLDDA 235
           ++S      +  +       P+       +  A  + ++E+++  +    D S    +  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVL-----LLDAALTGELEVVQQAVKEMNDPSQPNEEGI 55

Query: 236 YALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARAS 295
            ALH A    +  +  + L    A +N  D+ G T LH AA  N+  + + L+  GA   
Sbjct: 56  TALHNAICGANYSI-VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114

Query: 296 E-TTSDGQTAVAIC 308
             T SDG TA   C
Sbjct: 115 ATTLSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 8/102 (7%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A+   +  ++  L+   +NV   D++    LH AA+C    +   ++    A +    
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG-AAIFATT 117

Query: 266 AR-GRTVLHVAARRNE--PEVMVTLLSKGARASETTSDGQTA 304
              G T         E   +    L           S    A
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 16/125 (12%), Positives = 29/125 (23%), Gaps = 25/125 (20%)

Query: 193 ANIAEVD------PMH-AKIVRRIHKALHSDDVELLKLLL----DVSNVTLDDAYALHYA 241
           A I                  R  +        +    L      +  +     YAL   
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYA-------DCATYLADVEQSMGLMNSGAVYALWDY 163

Query: 242 AACCSPKVFKEVLNMDSAGLNL--KDARGRTVLHVAARRNEPE-VMVTLLSKGARASETT 298
           +A    +   E+   +   + +  +D    T    AA   +   V         R     
Sbjct: 164 SA----EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQR 219

Query: 299 SDGQT 303
           S  + 
Sbjct: 220 SKVKH 224

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 56.7 bits (138), Expect = 9e-10
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A    ++E ++ LL    D   +  +   AL  A+      +   +L  D   +N+ D
Sbjct: 41  IWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERD-VDINIYD 99

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T L  A R N  + +  LL++GA  +     G T 
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 20/68 (29%), Positives = 28/68 (41%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
           ++H  AA       KE L      +N  D RG T L  A+   E E +  LL  GA    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 297 TTSDGQTA 304
              + ++A
Sbjct: 65  LAKERESA 72

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.8 bits (128), Expect = 2e-08
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A      +++ LLL+   ++ + D      L YA      K  + +L    A L  + 
Sbjct: 74  SLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEA 132

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
             G T + +A      +V   + +   +  ++      
Sbjct: 133 DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 56.6 bits (138), Expect = 9e-10
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG--LNL 263
             A        +  L++    +   D     AL +A       + +++L   S G  +N 
Sbjct: 40  MVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL---SKGSNVNT 96

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           KD  G+T L  +      E+   LL  GA  ++   +G+T 
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 54.3 bits (132), Expect = 8e-09
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG--LNL 263
             A+ ++ + + + LL   SNV   D      L ++      ++   +L     G  +N 
Sbjct: 73  IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL---EHGANVND 129

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           ++  G T L VA++    E++  LL  GA  S     G TA
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.2 bits (124), Expect = 8e-08
 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 7/68 (10%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
                          + L+      N +D+  RT L VA        +  L+    +  +
Sbjct: 11  VEKIKDEKSI----NQNLDFL---RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED 63

Query: 297 TTSDGQTA 304
              +G TA
Sbjct: 64  KDIEGSTA 71

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG--LNL 263
             ++     E+   LL+  +NV   +      L  A+     ++ K++L     G  ++ 
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL---ELGADISA 162

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLS 289
           +D  G T    A      EV+     
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTE 188

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 6/100 (6%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAY-ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           H A  ++ ++L+K  +     V  +  D     LH+A       +  +++    A  +L 
Sbjct: 47  HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLI 105

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           D  G + +H+AA+     ++  L++KG        +G T 
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 209 IHKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           IH A       ++  L+    +V + D      L +AA          +L   +  +NL 
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 265 D-ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           D     T LH A       V+  LL  GA        G++A
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESA 213

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 229 NVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMV 285
           ++T  D Y    +  A      +  +E++      +   D    T+LH AA  N  +++ 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAG-YDVRQPDKENVTLLHWAAINNRIDLVK 59

Query: 286 TLLSKGARASETTSD-GQTA 304
             +SKGA   +   D   T 
Sbjct: 60  YYISKGAIVDQLGGDLNSTP 79

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.0 bits (113), Expect = 4e-06
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 212 ALHSDDVELLKLLLDV-SNVTLDDAY----ALHYAAACCSPKVFKEVLNMDSAGLNLKDA 266
           A  +  V+  +LLL    +V L D Y    ALH+A    +  V   +L    A ++ ++ 
Sbjct: 150 AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNI 208

Query: 267 RGRTVLHVAARRNEPEVMVTLLSKGA 292
           +G + L +A +R    ++  L     
Sbjct: 209 KGESALDLAKQRKNVWMINHLQEARQ 234

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 210 HKALHSDDVELLKLLLDVS-NVTLDDAY--ALHYAAACCSPKVFKEVLNMDSAGLNLKDA 266
                ++  +     +     V  +      L  ++      + + ++       +L + 
Sbjct: 10  PPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPND 68

Query: 267 RGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            G T LH A      E++  L+  G   +   SDG T 
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAG----- 260
           H A+ +   E++K L+    NV   D+     LH AA+C + +V K ++    +G     
Sbjct: 75  HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV---ESGAAVFA 131

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
           +   D +              +    L     +          A+  
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD 178

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 1/40 (2%)

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           +  G+  L    R N  +     ++ G R           
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLAL 40

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +  +E++KLLL+  ++V   D      LH AA     +V K +L    A +N KD
Sbjct: 7   HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK-LLLEAGADVNAKD 65

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             GRT LH+AAR    EV+  LL  GA  +    +G+T 
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.9 bits (105), Expect = 8e-06
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +  +E++KLLL+  ++V   D      LH AA     +V K +L    A +N KD
Sbjct: 40  HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKD 98

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
             GRT LH+AAR    EV+  LL  GA
Sbjct: 99  KNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           GRT LH+AAR    EV+  LL  GA  +    +G+T 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 38

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 218 VELLKLLLDV-SNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHV 274
                 L+   S++  D    L  AA        + ++   + G  +  KD  G T LH+
Sbjct: 7   HHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHL 63

Query: 275 AARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
           AAR    EV+  LL  GA        G+TA  I
Sbjct: 64  AARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 228 SNVTLDDAYALHYAAACCSPKVFK--EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMV 285
           +N    D  ALH A            + L  +S  L+ +  +G T LH     +  E + 
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222

Query: 286 TLLSKGARASETTSDGQTAVAICRRM 311
            LL   A        G+T + I +R+
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRL 248

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 10/89 (11%)

Query: 214 HSDDVELLKLLL----DVSNVTLDDAYALHYAAACCS------PKVFKEVLNMDSAGLNL 263
            +   EL K+ L    D++ +       +                ++K + +     L +
Sbjct: 90  ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGA 292
           KD  G T L    R  +P  +  +     
Sbjct: 150 KDKWGLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 11/115 (9%), Positives = 27/115 (23%), Gaps = 20/115 (17%)

Query: 210 HKALHSDD----VELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMD---S 258
           +  L +++     ++   L+    D+ + T +               +            
Sbjct: 43  YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 259 AG--LNLKDARGRTVLHVAARRN-------EPEVMVTLLSKGARASETTSDGQTA 304
            G  +       + V+               P   +     G +       G TA
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 12/108 (11%)

Query: 209 IHKALHSDDVELLKLLL---DVSNVTLDDAYALHYAAACCSPKVFKEVLNM--DS-AGLN 262
           +  A      E    L         ++  +  L+      + +   ++     +  A + 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69

Query: 263 LKDARGRTVLHVAARRN------EPEVMVTLLSKGARASETTSDGQTA 304
            +   G T+     +          E+    L KGA  +      +  
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 237 ALHYAAACCSPKVFKEVLNM--DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARA 294
            +  AA   + + F E+     +     LK      VL         ++ + L++KGA  
Sbjct: 9   TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68

Query: 295 SETTSDGQTA 304
              T +G T 
Sbjct: 69  KSRTKEGTTL 78

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 210 HKALHSDDVELLKLLLDV--SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
             A      E+L  +L     ++   + Y   AL  AA        K +L      ++ +
Sbjct: 77  LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136

Query: 265 DARGRTVLHVAARRNEP-----EVMVTLLSKGARASETTSDGQTA 304
           +  G T L  A    E      +++  L+  GA  S   + G+TA
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           + A+H++D+E+ K L+D  +++ L ++       YA A    ++   +L   +  LN  +
Sbjct: 44  NIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN 103

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKG-ARASETTSDGQTA 304
             G   L  AA +   + +  LL  G          G TA
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
            L  A    + KV KE+L   +  ++  D  G T L++A   N+ E+   L+ +GA  + 
Sbjct: 9   LLEAANQRDTKKV-KEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

Query: 297 TTSDGQTA 304
             S   + 
Sbjct: 68  QNSISDSP 75

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 263 LKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           +K      +L  A +R+  +V   L     +  E  ++G T 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP 42

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 210 HKALHSDDVELLKLLLD--VSNVTLDDAY---ALHYAAACC-SPKVFKEV----LNMDSA 259
             A     ++ +KLLL+    ++   + +   AL  A       ++++++    +    A
Sbjct: 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-A 169

Query: 260 GLNLKDARGRTVLHVAARRNEPEVMVTLLS 289
             ++KD  GRT +  A ++   E+   L  
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 212 ALHSDDVELLKLLLDVSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKDARG 268
            +++   + LK  L   +    D +   A +YA A  + ++   +LN   A  NL +   
Sbjct: 6   RINTWKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG-ALKNLLE--N 62

Query: 269 RTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
              LH AA   + +++  LL  G   S+    G TA
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA 98

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 3e-09
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 210 HKALHSDDVELLKLLLDV-SNV-TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDAR 267
           + A+  ++V L+  LL+  +    L++ + LH AA     K+ K +L       +  D +
Sbjct: 36  YYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG-LDDSQFDDK 94

Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDG-QTA 304
           G T L+ A      + +   + K  R       G +T+
Sbjct: 95  GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS 132

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY----ALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           + A+ S +++ +KL +     +          + ++A       +      +        
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS-YF-LSEIPSTFD 157

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            A   + +H+  +    ++M+ LL      +   S     
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP 197

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 12/128 (9%), Positives = 30/128 (23%), Gaps = 31/128 (24%)

Query: 210 HKALHSDDVELLKLLLDVSNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKDA 266
           + A+  +DV ++   L     T D A     +H         +   +L+      N  ++
Sbjct: 134 YHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNS 192

Query: 267 RGRT---------------------------VLHVAARRNEPEVMVTLLSKGARASETTS 299
                                                  ++ E+   ++ K       + 
Sbjct: 193 LLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSY 252

Query: 300 DGQTAVAI 307
                +  
Sbjct: 253 TKDLDIVK 260

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 207 RRIHKALHSDDVELLKLLL----------DVSNVTLDDAYALHYAAACCSPK--VFKEVL 254
           +R+  A+ + D+  +                 +    +   LH A    +       + +
Sbjct: 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 193

Query: 255 NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
             +   L+ K A G T LH AA  N+P+ +  LL   A        G+TA+ I R+ 
Sbjct: 194 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 52.8 bits (128), Expect = 6e-09
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARA 294
            LH AA     +  K++L   S G  +N +   G T LH+AA+    E++  LL+KGA  
Sbjct: 12  PLHNAAKNGHAEEVKKLL---SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68

Query: 295 SETTSDGQTA 304
           +  + DG T 
Sbjct: 69  NARSKDGNTP 78

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 52.4 bits (127), Expect = 8e-09
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 210 HKALHSDDVELLKLLLDV-SNVTLDDAY---ALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +   E +K LL   ++V          LH AA     ++ K +L    A +N + 
Sbjct: 14  HNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARS 72

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
             G T  H+A +    E++  L +KGA  +  +      
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 21/45 (46%)

Query: 260 GLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           G       G T LH AA+    E +  LLSKGA  +  + DG T 
Sbjct: 1   GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTP 45

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.3 bits (124), Expect = 3e-08
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
             A     VE ++ LL    D + +       +       +     E+L +  A  N  D
Sbjct: 17  ATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVA--ELLLLHGAEPNCAD 74

Query: 266 ARGRTV-LHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
               T  +H AAR    + +V L   GAR     + G+  
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           S G+++        L  AA R + E +  LL  GA  +     G+  
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRP 48

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 218 VELLKLLL----DVSNVTLDDAY--ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTV 271
            ++ +LLL    +  N          +H AA          +     A L++ DA GR  
Sbjct: 57  AQVAELLLLHGAEP-NCADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLP 114

Query: 272 LHVAARRNEPEVMVTLLSKGA 292
           + +A  +   ++   L +   
Sbjct: 115 VDLAEEQGHRDIARYLHAATG 135

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 49.7 bits (120), Expect = 3e-08
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARA 294
            LH AA     +V K +L    AG  +N KD  GRT LH+AAR    EV+  LL  GA  
Sbjct: 5   PLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 295 SETTSDGQTA 304
           +    +G+T 
Sbjct: 62  NAKDKNGRTP 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.4 bits (109), Expect = 1e-06
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 210 HKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD 265
           H A  +  +E++KLLL    DV+    +    LH AA     +V K +L    A +N KD
Sbjct: 7   HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKD 65

Query: 266 ARGRTVLHVAARRNEPEVMVTLLSKGA 292
             GRT LH+AAR    EV+  LL  GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 39.6 bits (94), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
           GRT LH+AAR    EV+  LL  GA  +    +G+T 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 38

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 207 RRIHKALHSDDVELLKLLL----------DVSNVTLDDAYALHYAAACCSPKVFK--EVL 254
           +R+  A+ + D+  +                 +    +   LH A    +       + +
Sbjct: 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212

Query: 255 NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
             +   L+ K A G T LH AA  N+P+ +  LL   A        G+TA+ I R+ 
Sbjct: 213 IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 269

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 25/120 (20%)

Query: 207 RRIHKALHSDDVE----LLKLLLDV-SNVTLDDAY-------ALHYAAACCSP------- 247
             +   +     +    LL  LL     +T ++          L  A    S        
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 248 ------KVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDG 301
                 +    +    ++       RG+T LH+A  R     +  L+ KGA         
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 23/147 (15%), Positives = 37/147 (25%), Gaps = 35/147 (23%)

Query: 193 ANIAEVDPMHAKIVRRI-HKAL---HSDDVELLKLLLDV------------SNVTLDDAY 236
             + + +       +    KAL    +   + + +LLD+            S        
Sbjct: 33  KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR 92

Query: 237 ---ALHYAAACCSPKVFK-------------EVLNMDSAGLNLKDARGRTVLHVAARRNE 280
              ALH A         +                             G   L +AA  N+
Sbjct: 93  GQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 281 PEVMVTLLSKG---ARASETTSDGQTA 304
           P ++  L   G   A      S G T 
Sbjct: 153 PHIVHYLTENGHKQADLRRQDSRGNTV 179

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 22/115 (19%)

Query: 210 HKALHSDDVELLKLLLD----VSNVTLDDAY---ALHYAAACCS-----PKVFKEV---- 253
             A  ++   ++  L +     +++   D+     LH   A         K   ++    
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204

Query: 254 ------LNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQ 302
                 L  D+    L +  G + L +AA+  +  +   ++ +    +       
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.9 bits (115), Expect = 7e-07
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 218 VELLKLLLDV-SNVTLDDAY----ALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRT 270
             + +LLL   +     D       +H AA          +     AG  L+++DA GR 
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH---RAGARLDVRDAWGRL 113

Query: 271 VLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
            + +A      +V   L +       +      A
Sbjct: 114 PVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 7/79 (8%)

Query: 229 NVTLDDAY-ALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHVAARRNEPEVMV 285
             +++ +   L  AAA    +  + +L    AG   N  ++ GR  + V    +   V  
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALL---EAGANPNAPNSYGRRPIQVMMMGSA-RVAE 61

Query: 286 TLLSKGARASETTSDGQTA 304
            LL  GA  +       T 
Sbjct: 62  LLLLHGAEPNCADPATLTR 80

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 14/46 (30%)

Query: 259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
                        L  AA R   E +  LL  GA  +   S G+  
Sbjct: 3   PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRP 48

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 25/123 (20%)

Query: 207 RRIHKALHSDDVELLKLLLD---------VSNVTLDDAY---ALHYAAACCS-------- 246
            R+   +     E L  LL+           +   + +     L  A             
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 247 -----PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDG 301
                 K       + +A    +  +G + LH+A  +   + +  L+  GA         
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 302 QTA 304
              
Sbjct: 124 FFQ 126

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 20/130 (15%), Positives = 32/130 (24%), Gaps = 35/130 (26%)

Query: 210 HKALHSDDVELLKLLLD-----------------VSNVTLDDAYALHYAAACCSPKVFKE 252
           H A+    ++ +KLL++                            L  AA      V   
Sbjct: 95  HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154

Query: 253 VL--NMDSAGLNLKDARGRTVL----------------HVAARRNEPEVMVTLLSKGARA 294
           +L      A L   D+ G TVL                 +       ++   L       
Sbjct: 155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLE 214

Query: 295 SETTSDGQTA 304
             +   G T 
Sbjct: 215 EISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 25/153 (16%), Positives = 37/153 (24%), Gaps = 37/153 (24%)

Query: 210 HKAL---HSDDVELLKLLL---------------DVSNVTLDDAYALHYAAACCSPKVFK 251
            KA+          +  LL                 ++       ALH A    S +  K
Sbjct: 48  MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVK 107

Query: 252 EVL------------NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG---ARASE 296
            ++                         G   L +AA   + +V+  LL      A    
Sbjct: 108 LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA 167

Query: 297 TTSDGQT----AVAICRRMTRRKDYIEASKQGQ 325
           T S G T     V I          +     G 
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 212 ALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTV 271
            LH          L +      +  AL         ++    L        + + +G T 
Sbjct: 175 VLH---------ALVMIADNSPENSALVIHMYDGLLQMGA-RLCPTVQLEEISNHQGLTP 224

Query: 272 LHVAARRNEPEVMVTLLSKGA 292
           L +AA+  + E+   +L +  
Sbjct: 225 LKLAAKEGKIEIFRHILQREF 245

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 27/147 (18%)

Query: 207 RRIHKALHSDDVELLKLLLDVSNVTL---------DDAY---ALHYAAACCSPKVFKEVL 254
           R I  A+   + + L+ LL     +          D       L  A           + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 255 -------------NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDG 301
                           +A       +G+T LH+A  R    ++  L+  GA      +  
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134

Query: 302 QTAVAICRRMTRRKDY--IEASKQGQE 326
                  R      +     A+   Q 
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQL 161

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 34/129 (26%)

Query: 210 HKAL---HSDDVELLKLLLDVS----------NVTLDDAY-----ALHYAAACCSPKVFK 251
            KA+   H+   + + LLLDV+          N +  D+Y     ALH A    +  +  
Sbjct: 59  LKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

Query: 252 EVLN-------------MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG---ARAS 295
            ++                          G   L +AA  N+  ++  LL      A  S
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 296 ETTSDGQTA 304
              S G T 
Sbjct: 179 ARDSVGNTV 187

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 29/117 (24%)

Query: 210 HKALHSDDVELLKLLLDVS----NVTLDDAY---ALHYAAACCSPKVFKEV--------- 253
             A  ++ + ++K LL  S    +++  D+     LH         V             
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEI 212

Query: 254 ------LNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA 304
                 L+       + + +G T L +AA   +  V+  +L +              
Sbjct: 213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPEC 262

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 7/148 (4%)

Query: 170 RELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLL---- 225
           R  P          R  S +      +E              + H   +  +   L    
Sbjct: 165 RGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGA 224

Query: 226 --DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEV 283
             +  N   D+A  L  A A  S  +  E L  + A +N  D+ GR  LH A       +
Sbjct: 225 DVNWVNGGQDNATPLIQATAANSL-LACEFLLQNGANVNQADSAGRGPLHHATILGHTGL 283

Query: 284 MVTLLSKGARASETTSDGQTAVAICRRM 311
               L +GA      S+G+  + I    
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMET 311

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 13/148 (8%)

Query: 170 RELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRR---------IHKALHSDDVEL 220
           R +P  +   +    + +N+ S   ++  + +H  +            +       +   
Sbjct: 19  RLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNA 78

Query: 221 LKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHVAARR 278
            +L  D     +        AA          +  + ++   + +  A       +AA  
Sbjct: 79  KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138

Query: 279 NEPEVMVTLLSKGA--RASETTSDGQTA 304
               V+  L         +   ++   A
Sbjct: 139 GHLHVLNRLCELAPTEIMAMIQAENYHA 166

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 23/132 (17%)

Query: 201 MHAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDS-- 258
            H   ++ +H A    + + +  L+  S   L   Y L          +  ++  + S  
Sbjct: 246 RHVNRLKEMHDAFKLSNPDGVFDLVTKSE-CLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 259 -----AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTR 313
                A           +L +A R         LLS  +                  +T+
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS---------------VLALTK 349

Query: 314 RKDYIEASKQGQ 325
             +Y      G+
Sbjct: 350 ANNYYINETGGR 361

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 10/141 (7%)

Query: 174 DEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAL---HSDDVELLKLLL----D 226
           ++V   +       N+ ++   ++      K       A     S  ++ L LLL     
Sbjct: 61  EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI 120

Query: 227 VSNVTLDDAYALHYAAACCSPKVFKEVLNM-DSAGLNLKDARGRTVLHVAARRNEPEVMV 285
           V  +  ++  A   AA      V   +  +  +  + +  A       +AA      V+ 
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 286 TLLSKGARASETT--SDGQTA 304
            L       +     ++   A
Sbjct: 181 RLCELAPTEATAMIQAENYYA 201

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 319 EASKQGQETNKDRLC-IDVLEREMRRNSMSRFPPKKFLDCDWSDAYLLENGTPEEQNRKR 377
           E+ ++ +E  + RL  +D   + M +    +   KK L+ +W+           EQ  K 
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKA--KKDLE-EWNQRQ-------SEQVEKN 134

Query: 378 ARFMELKEVQKAFYKDMAEKIV 399
                 +   KAFY+     I+
Sbjct: 135 KI--NNRIADKAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	415
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.15
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.14
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.13
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.12
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.12
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.11
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.1
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.08
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.07
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.07
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.06
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.04
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.01
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.0
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	98.94
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	98.94
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	98.92
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	98.91
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.9
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	98.82
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	97.19
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	96.56
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	94.89
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	94.07
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	89.44
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	85.38
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	83.58

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=8.9e-39  Score=291.10  Aligned_cols=223  Identities=13%  Similarity=-0.002  Sum_probs=171.5

Q ss_pred             hhhhHHHHHHHHHcC-------------cHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCC
Q 014994           97 VNYVIELMYASAALQ-------------MKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNL  163 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g-------------~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~  163 (415)
                      ...+.||||+|+..|             ..+++++|++.|++++.. .+..|.||||+|+..|+.+++++|++.  +.++
T Consensus         7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~   83 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEA--SADA   83 (253)
T ss_dssp             ---------------------------------------------C-CCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred             CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence            345789999999987             899999999999999763 378999999999999999999999998  7889


Q ss_pred             CccccCCCChHHHHHHHHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHH
Q 014994          164 DNFCLERELPDEVSSEIKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYAL  238 (415)
Q Consensus       164 ~~~~~~g~tpl~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL  238 (415)
                      +..+..|.||||+|+..+...+.. ++..++  ..++..+..|.||||+|+..|+.+++++|++.| ++   |..|+|||
T Consensus        84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L  161 (253)
T 1yyh_A           84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRA--TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL  161 (253)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT--SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            999999999999999888777633 334443  245666789999999999999999999999999 54   57899999


Q ss_pred             HHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHH
Q 014994          239 HYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYI  318 (415)
Q Consensus       239 ~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~  318 (415)
                      |+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus       162 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~  240 (253)
T 1yyh_A          162 HWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR  240 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999996 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 014994          319 EASKQGQ  325 (415)
Q Consensus       319 ~l~~~g~  325 (415)
                      +|.....
T Consensus       241 ~l~~~~~  247 (253)
T 1yyh_A          241 LLDLEHH  247 (253)
T ss_dssp             HHHC---
T ss_pred             HHHHHhh
Confidence            9987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-38  Score=309.50  Aligned_cols=222  Identities=17%  Similarity=0.110  Sum_probs=195.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .+.||||+|+..|+.+++++|+++|++++..  +..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+
T Consensus       145 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~  220 (437)
T 1n11_A          145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYTPLHIAA  220 (437)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGG--TCCSCCCCTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHH
Confidence            3567899999999999999999999988886  78899999999999999999999987  6678888888999999998


Q ss_pred             HHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHH
Q 014994          179 EIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~L  253 (415)
                      ..+...+ ..++..|++   ++..+..|.||||+|+..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|
T Consensus       221 ~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  297 (437)
T 1n11_A          221 KQNQVEVARSLLQYGGS---ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL  297 (437)
T ss_dssp             HTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8777766 344465654   4455678999999999999999999999998 43   56789999999999999999999


Q ss_pred             HhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          254 LNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       254 l~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ++. |+++|.+|..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       298 l~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          298 IKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             HHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC
Confidence            987 89999999999999999999999999999999999999999999999999999999999999999998885

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.8e-38  Score=288.63  Aligned_cols=225  Identities=19%  Similarity=0.155  Sum_probs=204.6

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      +.||||+|+..|+.+++++|++.|++++.+  +..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+.
T Consensus        39 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~  114 (285)
T 1wdy_A           39 GWTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAV  114 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHHHHH
Confidence            458899999999999999999999999986  89999999999999999999999998  77899999999999999998


Q ss_pred             HHhhhh-hhccccccCccCCCCC-------CccccHHHHHHHhcCCHHHHHHHHHC-C-CC---CCCCchHHHHHHHCCC
Q 014994          180 IKSLRV-KSNQESEANIAEVDPM-------HAKIVRRIHKALHSDDVELLKLLLDV-S-NV---TLDDAYALHYAAACCS  246 (415)
Q Consensus       180 ~~~~~~-~~~~~~~~~~~~~~~~-------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g-~~---~~~g~tpL~~A~~~g~  246 (415)
                      .+...+ ..++..|+++...+..       +..|.||||+|+..|+.+++++|++. | ++   |..|.||||+|+..++
T Consensus       115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  194 (285)
T 1wdy_A          115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD  194 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC
T ss_pred             hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc
Confidence            888776 4445667666544322       67899999999999999999999997 6 43   5789999999999999


Q ss_pred             ----HHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHH
Q 014994          247 ----PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS-KGARASETTSDGQTAVAICRRMTRRKDYIEAS  321 (415)
Q Consensus       247 ----~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~  321 (415)
                          .+++++|++. |+++|.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+
T Consensus       195 ~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll  273 (285)
T 1wdy_A          195 DSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             TTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence                8999999986 89999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             hcCCCccc
Q 014994          322 KQGQETNK  329 (415)
Q Consensus       322 ~~g~~~~~  329 (415)
                      ++|+++..
T Consensus       274 ~~Ga~~~~  281 (285)
T 1wdy_A          274 KRGASTDC  281 (285)
T ss_dssp             HHSSCSCC
T ss_pred             HcCCCCCc
Confidence            99998764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.7e-39  Score=289.07  Aligned_cols=223  Identities=15%  Similarity=0.073  Sum_probs=196.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHH----hCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCCh
Q 014994           98 NYVIELMYASAALQMKDRVFLLQH----WLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELP  173 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tp  173 (415)
                      ..+.||||+|+..|+.+++++|++    .|.+++..  +..|.||||+|+..|+.+++++|++.  +.+++..+..|.||
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTA   82 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc--cccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCH
Confidence            346789999999999999999887    78999886  89999999999999999999999998  77899999999999


Q ss_pred             HHHHHHHHhhhhh-hccccccC-ccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC----CCCchHHHHHHHCCC
Q 014994          174 DEVSSEIKSLRVK-SNQESEAN-IAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT----LDDAYALHYAAACCS  246 (415)
Q Consensus       174 l~~a~~~~~~~~~-~~~~~~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~g~  246 (415)
                      ||+|+..+...+. .++..++. ...++..+..|.||||+|+..|+.+++++|++.| +++    ..|.||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            9999888877663 33444442 2256667789999999999999999999999999 543    579999999999999


Q ss_pred             HHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCC
Q 014994          247 PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQ  325 (415)
Q Consensus       247 ~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~  325 (415)
                      .+++++|++. |+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.++++.|...++
T Consensus       163 ~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          163 LSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            9999999996 99999999999999999999999999999999999999999999999999999999999999888765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-39  Score=309.57  Aligned_cols=225  Identities=16%  Similarity=0.139  Sum_probs=202.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHH--------HhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccC
Q 014994           98 NYVIELMYASAALQMKDRVFLLQ--------HWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLE  169 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~  169 (415)
                      ..+.||||+|+..|+.+++++|+        +.|+++|..  |..|.||||+|+..|+.+++++|++.  +++++..+..
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~  198 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKS  198 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTT
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHC--CCCCcccCCC
Confidence            35789999999999998887665        899999997  99999999999999999999999998  7889999999


Q ss_pred             CCChHHHHHHHHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcC---CHHHHHHHHHCC-CCC-----------CC
Q 014994          170 RELPDEVSSEIKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSD---DVELLKLLLDVS-NVT-----------LD  233 (415)
Q Consensus       170 g~tpl~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g-~~~-----------~~  233 (415)
                      |.||||+|+..+...+.. ++..+.....++..|..|.||||+|+..|   +.+++++|+++| +++           ..
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~  278 (373)
T 2fo1_E          199 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK  278 (373)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccccc
Confidence            999999999988877733 44444223456667789999999999998   899999999999 554           37


Q ss_pred             CchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Q 014994          234 DAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTR  313 (415)
Q Consensus       234 g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~  313 (415)
                      |+||||+|+..|+.++|++|++..|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus       279 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          279 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             CCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence            89999999999999999999988669999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHhcCCC
Q 014994          314 RKDYIEASKQGQE  326 (415)
Q Consensus       314 ~~~v~~l~~~g~~  326 (415)
                      .+++++|+++|..
T Consensus       359 ~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          359 HNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHHHTTC--
T ss_pred             HHHHHHHHhcCcc
Confidence            9999999999864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6e-38  Score=282.30  Aligned_cols=218  Identities=19%  Similarity=0.152  Sum_probs=195.6

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHH
Q 014994           97 VNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEV  176 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~  176 (415)
                      ...+.||||+|+..|+.+++++|++.|++++..  +..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHH
Confidence            345678999999999999999999999999986  88999999999999999999999998  77899999999999999


Q ss_pred             HHHHHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHH
Q 014994          177 SSEIKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFK  251 (415)
Q Consensus       177 a~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~  251 (415)
                      |+..+...+.. ++..+  ...++..+..|.||||+|+..|+.+++++|++.| ++   +..|.||||+|+..|+.++++
T Consensus        84 A~~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNG--QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHTTCHHHHHHHHTTT--CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCC--CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHH
Confidence            99888777633 33443  2345566779999999999999999999999999 44   567999999999999999999


Q ss_pred             HHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHH
Q 014994          252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEAS  321 (415)
Q Consensus       252 ~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~  321 (415)
                      +|++. |++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+..|+...+..+.
T Consensus       162 ~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          162 ILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHc-CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99986 8999999999999999999999999999999999999999999999999999999876555444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-38  Score=304.34  Aligned_cols=224  Identities=13%  Similarity=0.052  Sum_probs=199.3

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHH
Q 014994           97 VNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEV  176 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~  176 (415)
                      ...+.|+||+|+..|+.++|++|++.|++++..  |..|.||||+|+..|+.+++++|++.  +.+++  +..|.||||+
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~--~~~g~t~L~~   90 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASV--GEVHS--LWHGQKPIHL   90 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHH--CCCCC--CBTTBCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHC--CCCcc--ccCCCCHHHH
Confidence            456899999999999999999999999999986  99999999999999999999999999  44433  4689999999


Q ss_pred             HHHHHhhhhhhc-ccc----ccCccC--------------CCCCCccccHHHHHHHhcC--CHHHHHHHHHCC-CC---C
Q 014994          177 SSEIKSLRVKSN-QES----EANIAE--------------VDPMHAKIVRRIHKALHSD--DVELLKLLLDVS-NV---T  231 (415)
Q Consensus       177 a~~~~~~~~~~~-~~~----~~~~~~--------------~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g-~~---~  231 (415)
                      |+..++..+... +..    |+++..              ++..+..|.||||+|+..|  +.++|++|+++| ++   |
T Consensus        91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d  170 (364)
T 3ljn_A           91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD  170 (364)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccC
Confidence            988877776333 343    443332              2226678999999999999  999999999999 54   5


Q ss_pred             CCCchHHHHHHHCCCHHHHHHHHhcCCCC-----ccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 014994          232 LDDAYALHYAAACCSPKVFKEVLNMDSAG-----LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVA  306 (415)
Q Consensus       232 ~~g~tpL~~A~~~g~~~~v~~Ll~~~gad-----vn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~  306 (415)
                      ..|+||||+|+..|+.+++++|++. |++     +|..|..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||
T Consensus       171 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~  249 (364)
T 3ljn_A          171 KADETPLMRAMEFRNREALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY  249 (364)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            6899999999999999999999996 788     9999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcchHHHHHhcCCCc
Q 014994          307 ICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       307 ~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      +|+..|+.+++++|++.|..+
T Consensus       250 ~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          250 LSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             HHHHTCCHHHHHHHHHHSCHH
T ss_pred             HHHHhChHHHHHHHHHcCCch
Confidence            999999999999999998764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-37  Score=303.87  Aligned_cols=290  Identities=17%  Similarity=0.094  Sum_probs=172.1

Q ss_pred             ccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcccccCCC
Q 014994            8 ANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVSACVDDA   87 (415)
Q Consensus         8 ~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~~~~~~~   87 (415)
                      ....|+|.|+..+..+.++.++..+.+.........      .|....+.+... .+++|+......+.           
T Consensus        13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~------t~L~~A~~~g~~-~~v~~Ll~~g~~~~-----------   74 (437)
T 1n11_A           13 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE------TPLHMAARAGHT-EVAKYLLQNKAKVN-----------   74 (437)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC------CHHHHHHHHTCH-HHHHHHHHHTCCSS-----------
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC------CHHHHHHHcCCH-HHHHHHHhCCCCCC-----------
Confidence            456888888888888888888875433211111000      111001111111 22344433211110           


Q ss_pred             CCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhc--------
Q 014994           88 CVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIA--------  159 (415)
Q Consensus        88 c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~--------  159 (415)
                             .....+.||||+|+..|+.+++++|+++|++++..  +..|.||||+|+..|+.+++++|++.++        
T Consensus        75 -------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  145 (437)
T 1n11_A           75 -------AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK  145 (437)
T ss_dssp             -------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             -------CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC
Confidence                   01112345566666666666666666666665553  4455555555555555555555554411        


Q ss_pred             -----------------------CCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhc
Q 014994          160 -----------------------GSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHS  215 (415)
Q Consensus       160 -----------------------~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  215 (415)
                                             +.+++..+..|.||||+|+..+...+ ..++..|+++   +..+..|.||||+|+..
T Consensus       146 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~  222 (437)
T 1n11_A          146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP---HSPAWNGYTPLHIAAKQ  222 (437)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS---CCCCTTCCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHHc
Confidence                                   34445555555555555555444443 2222333332   33445667777777777


Q ss_pred             CCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 014994          216 DDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG  291 (415)
Q Consensus       216 g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~G  291 (415)
                      |+.+++++|++.| ++   +..|.||||+|+..|+.+++++|++. |++++..+..|+||||+|+..|+.+++++|+++|
T Consensus       223 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  301 (437)
T 1n11_A          223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG  301 (437)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            7777777777776 33   34677778877777787888777775 7788777778888888888888888888888888


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          292 ARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       292 adin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ++++.+|..|+||||+|+..|+.+++++|++.|++++
T Consensus       302 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n  338 (437)
T 1n11_A          302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN  338 (437)
T ss_dssp             CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT
T ss_pred             ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC
Confidence            8888888888888888888888888888888777664

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.8e-38  Score=289.55  Aligned_cols=209  Identities=15%  Similarity=0.063  Sum_probs=173.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCC---cccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLG---MVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDE  175 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~  175 (415)
                      .+.||||+|+..|+.+++++|++.|++   ++.+  +..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~   83 (282)
T 1oy3_D            8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ--NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHTALH   83 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence            467899999999999999999999998   6665  88999999999999999999999998  7889999999999999


Q ss_pred             HHHHHHhhhh-hhccccccCc--------------------------------------------cCCCCCCccccHHHH
Q 014994          176 VSSEIKSLRV-KSNQESEANI--------------------------------------------AEVDPMHAKIVRRIH  210 (415)
Q Consensus       176 ~a~~~~~~~~-~~~~~~~~~~--------------------------------------------~~~~~~~~~g~t~L~  210 (415)
                      +|+..+...+ ..++..+++.                                            ..++..+..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            9987776665 3333444331                                            236677889999999


Q ss_pred             HHHhcCCHHHHHHHHHCC-CCC----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHH
Q 014994          211 KALHSDDVELLKLLLDVS-NVT----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMV  285 (415)
Q Consensus       211 ~A~~~g~~~~v~~Ll~~g-~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~  285 (415)
                      +|+..|+.+++++|+++| +++    ..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.++++
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            999999999999999999 553    2499999999999999999999986 9999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 014994          286 TLLSKGARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       286 ~Ll~~Gadin~~d~~g~tpL~~A~~~~  312 (415)
                      +|+++||+++.+|..|.|||++|....
T Consensus       243 ~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          243 LLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHTTCCCCCCC--------------
T ss_pred             HHHHcCCCcCcCCCcccccccccCCcc
Confidence            999999999999999999999998754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.8e-37  Score=293.05  Aligned_cols=229  Identities=19%  Similarity=0.140  Sum_probs=185.0

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhc-------------------
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIA-------------------  159 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~-------------------  159 (415)
                      .+.|+||.|+..|+.++|++|+++|+++|.+ .+..|.||||+|+..|+.++|++|++.++                   
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            3678999999999999999999999999985 23469999999999999999999999854                   


Q ss_pred             ------------CCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCC-------CCCCccccHHHHHHHhcCCHH
Q 014994          160 ------------GSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEV-------DPMHAKIVRRIHKALHSDDVE  219 (415)
Q Consensus       160 ------------~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~g~t~L~~A~~~g~~~  219 (415)
                                  +.+++..+..|.||+++|+..+...+ ..++..|+++...       +..+..|.||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                        23556677788888888877766655 3334556554432       234556888888888888888


Q ss_pred             HHHHHHHC-C-CC---CCCCchHHHHHHHCCC----HHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 014994          220 LLKLLLDV-S-NV---TLDDAYALHYAAACCS----PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK  290 (415)
Q Consensus       220 ~v~~Ll~~-g-~~---~~~g~tpL~~A~~~g~----~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  290 (415)
                      +|++||++ | ++   |..|.||||+++..++    ..++++|++. |+|+|.+|..|+||||+|+..|+.+++++|++.
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~  261 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  261 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence            88888864 5 44   4678888887776543    2456666664 899999999999999999999999999999985


Q ss_pred             -CCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccc
Q 014994          291 -GARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNK  329 (415)
Q Consensus       291 -Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~  329 (415)
                       |+++|.+|.+|+||||+|+..|+.++|++|+++|++++.
T Consensus       262 ~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          262 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence             899999999999999999999999999999999998753

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.6e-38  Score=289.74  Aligned_cols=217  Identities=15%  Similarity=0.087  Sum_probs=195.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ..+.||||+|+..|+.+++++|++.|++++.+  +.+|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A  132 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNA  132 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHH
Confidence            34678999999999999999999999999986  89999999999999999999999998  789999999999999999


Q ss_pred             HHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHH
Q 014994          178 SEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKE  252 (415)
Q Consensus       178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~  252 (415)
                      +..+...+ ..++..|+++..    +..|.||||+|+..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          133 CVSGSWDCVNLLLQHGASVQP----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSC----SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHcCHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence            99888877 444466666543    235999999999999999999999999 44   5789999999999999999999


Q ss_pred             HHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhc-CCC
Q 014994          253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ-GQE  326 (415)
Q Consensus       253 Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~-g~~  326 (415)
                      |++. |+++|. +..|+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+  ++..++++|+++ |++
T Consensus       209 Ll~~-ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          209 LLES-GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGAS  279 (285)
T ss_dssp             HHHT-TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred             HHHC-CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence            9996 899995 899999999999999999999999999999999999999999999  568999999998 554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.7e-37  Score=278.31  Aligned_cols=219  Identities=18%  Similarity=0.102  Sum_probs=197.5

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 014994          101 IELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEI  180 (415)
Q Consensus       101 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~  180 (415)
                      .++||.|+..|+.+.++.|++.+..... ..+..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+..
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGG-CCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHH
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhh-cCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHHHHc
Confidence            4679999999999999999988766433 2388999999999999999999999998  778999999999999999998


Q ss_pred             Hhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHh
Q 014994          181 KSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLN  255 (415)
Q Consensus       181 ~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~  255 (415)
                      +...+ ..++..|+++   +..+..|.||||+|+..|+.+++++|++.| ++   +..|.||||+|+..|+.+++++|+.
T Consensus        84 ~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           84 GXDEIVKALLVKGAHV---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             TCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            88777 4444666554   455678999999999999999999999999 44   5679999999999999999999999


Q ss_pred             cCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       256 ~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      . |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|.+.|++
T Consensus       161 ~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          161 Y-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             T-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             c-CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            5 899999999999999999999999999999999999999999999999999999999999999988764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.2e-37  Score=281.78  Aligned_cols=224  Identities=19%  Similarity=0.074  Sum_probs=204.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .+.++||.|+..|+.+++++|++.|++++.. .+..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH
Confidence            3678999999999999999999999999874 367899999999999999999999998  7789999999999999999


Q ss_pred             HHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC-------------CCCCchHHHHHHH
Q 014994          179 EIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV-------------TLDDAYALHYAAA  243 (415)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~-------------~~~g~tpL~~A~~  243 (415)
                      ..++..+ ..++..|+++   +..+..|.||||+|+..|+.+++++|++.| ++             +..|.||||+|+.
T Consensus        81 ~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC---CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence            9888877 4444666554   456679999999999999999999999999 44             4568999999999


Q ss_pred             CCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHH
Q 014994          244 CCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNE----PEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIE  319 (415)
Q Consensus       244 ~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~----~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~  319 (415)
                      .|+.+++++|++..|++++..|..|+||||+|+..++    .+++++|+++|++++.+|..|.||||+|+..|+.++++.
T Consensus       158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  237 (285)
T 1wdy_A          158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            9999999999987799999999999999999999999    999999999999999999999999999999999999999


Q ss_pred             HHh-cCCCcc
Q 014994          320 ASK-QGQETN  328 (415)
Q Consensus       320 l~~-~g~~~~  328 (415)
                      |++ .|.+++
T Consensus       238 Ll~~~g~~~~  247 (285)
T 1wdy_A          238 LLEQEHIEIN  247 (285)
T ss_dssp             HHHSSSCCTT
T ss_pred             HHhccCCCcc
Confidence            999 787765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.3e-36  Score=289.24  Aligned_cols=225  Identities=21%  Similarity=0.158  Sum_probs=198.4

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHHH-hCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHH
Q 014994           97 VNYVIELMYASAALQMKDRVFLLQH-WLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDE  175 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~  175 (415)
                      ..+..++||.|+..|+.+.++.|+. .+.+++..  |..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS--DGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS--STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHH
Confidence            3457789999999999998886665 48888876  88999999999999999999999998  7789999999999999


Q ss_pred             HHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC----------------------
Q 014994          176 VSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT----------------------  231 (415)
Q Consensus       176 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~----------------------  231 (415)
                      +|+..++..+ ..++..|+++   +..|..|.||||+|+..|+.+++++|+++| +++                      
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~  173 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACV---NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL  173 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Confidence            9998888877 4444666554   445678999999999999999999999998 432                      


Q ss_pred             -----------------------------------CCCchHHHHHHHC---CCHHHHHHHHhcCCCCccccCCCCChHHH
Q 014994          232 -----------------------------------LDDAYALHYAAAC---CSPKVFKEVLNMDSAGLNLKDARGRTVLH  273 (415)
Q Consensus       232 -----------------------------------~~g~tpL~~A~~~---g~~~~v~~Ll~~~gadvn~~d~~g~TpLh  273 (415)
                                                         ..|.||||+|+..   +..+++++|+.. |+++|.+|..|+||||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~  252 (351)
T 3utm_A          174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLH  252 (351)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHH
T ss_pred             HhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHH
Confidence                                               3567999999999   557899999986 8999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccc
Q 014994          274 VAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNK  329 (415)
Q Consensus       274 ~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~  329 (415)
                      +|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++.|+++..
T Consensus       253 ~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          253 VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999998863

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-38  Score=288.78  Aligned_cols=214  Identities=19%  Similarity=0.147  Sum_probs=162.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCccc------ccccCCChhHHHHHHHcCcH-HHHHHHHHhhcCCCCCccccCCC
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVG------KALVEDVLPILVAAFHCQLN-MLRSYCIQRIAGSNLDNFCLERE  171 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~~g~t~L~~A~~~g~~-~lv~~ll~~~~~~~~~~~~~~g~  171 (415)
                      ...++|+.|+..|+.++|++|++.|++...      ...+..|.||||.|+..++. .++++|++.  +.++|..|.+|.
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d~~G~   87 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTSQDGS   87 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCCTTSC
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcCCCCC
Confidence            357899999999999999999999876421      11267899999999998885 588999987  789999999999


Q ss_pred             ChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCC
Q 014994          172 LPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCS  246 (415)
Q Consensus       172 tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~  246 (415)
                      ||||+|+..+...+ ..++..|+++   +..+..|.||+|+|+..++.+++++|++.| ++   |..|+||||+|+..|+
T Consensus        88 TpLh~A~~~g~~~~v~~Ll~~~a~~---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~  164 (269)
T 4b93_B           88 SPLHVAALHGRADLIPLLLKHGANA---GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH  164 (269)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC
T ss_pred             CHHHHHHHcCcHHHHHHHHhcCCCc---CccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            99999999888776 4445666554   445678999999999999999999999999 54   5789999999999999


Q ss_pred             HHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHH
Q 014994          247 PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEA  320 (415)
Q Consensus       247 ~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l  320 (415)
                      .++|++||+. |+|+|.++..|+||||+|+..|+.++|++||++|||+|.+|.+|+||||+|+.+++  ++++|
T Consensus       165 ~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          165 HELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             GGGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             HHHHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            9999999986 99999999999999999999999999999999999999999999999999987654  44443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-36  Score=272.55  Aligned_cols=217  Identities=17%  Similarity=0.114  Sum_probs=188.9

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCc-cccCCCChHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDN-FCLERELPDEVSS  178 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~-~~~~g~tpl~~a~  178 (415)
                      +.||||+|+..|+.+++++|++.|.+++.. .+..|.||||+|+..|+.+++++|++.++..+++. .+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccccc-CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            457899999999999999999999988662 38999999999999999999999999955466666 7899999999999


Q ss_pred             HHHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHH
Q 014994          179 EIKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       179 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~L  253 (415)
                      ..+...+.. ++..|. ...++..+..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPL-KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HHCCHHHHHHHHSSSS-CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCC-CcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            888877743 445542 1345566779999999999999999999999999 44   56899999999999999999999


Q ss_pred             HhcCC-CCccccCCCCChHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHh
Q 014994          254 LNMDS-AGLNLKDARGRTVLHVAARRNEPEVMVTLL-SKGARASETTSDGQTAVAICRRMTRRKDYIEASK  322 (415)
Q Consensus       254 l~~~g-advn~~d~~g~TpLh~A~~~~~~~~v~~Ll-~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~  322 (415)
                      ++. | +++|.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|+||||+|+..   .+++++.+
T Consensus       160 l~~-g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          160 CGL-GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HTT-TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             Hhc-CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            996 7 999999999999999999999999999999 88999999999999999999653   45555543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=281.82  Aligned_cols=224  Identities=14%  Similarity=0.049  Sum_probs=177.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCC-----------CcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCcc
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLL-----------GMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNF  166 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~-----------~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~  166 (415)
                      ..+.++||+|+..|+.+.+..++..+.           .++.+  +..|.||||+|+..|+.+++++|++.  +.+++..
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~   88 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNII   88 (285)
T ss_dssp             -----------------------------CCSEECCCCTTCSS--SCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEE
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC--CccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCc
Confidence            346788999999999766665544321           23333  78999999999999999999999998  7789999


Q ss_pred             ccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C--CCCCCchHHHHHH
Q 014994          167 CLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N--VTLDDAYALHYAA  242 (415)
Q Consensus       167 ~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~--~~~~g~tpL~~A~  242 (415)
                      +..|.||||+|+..+...+ ..++..|++   ++..|..|.||||+|+..|+.+++++|++.| +  .+..|.||||+|+
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~  165 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAA  165 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Confidence            9999999999999888877 444466655   4556679999999999999999999999999 4  3567999999999


Q ss_pred             HCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHh
Q 014994          243 ACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK  322 (415)
Q Consensus       243 ~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~  322 (415)
                      ..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++. |..|.||||+|+..|+.+++++|++
T Consensus       166 ~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~  243 (285)
T 3d9h_A          166 RRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMD  243 (285)
T ss_dssp             HHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999986 899999999999999999999999999999999999995 8999999999999999999999999


Q ss_pred             cCCCcccc
Q 014994          323 QGQETNKD  330 (415)
Q Consensus       323 ~g~~~~~~  330 (415)
                      .|++++..
T Consensus       244 ~gad~~~~  251 (285)
T 3d9h_A          244 FGADTQAK  251 (285)
T ss_dssp             TTCCTTCC
T ss_pred             CCCCCCCc
Confidence            99987643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.6e-36  Score=284.75  Aligned_cols=220  Identities=21%  Similarity=0.120  Sum_probs=194.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ..+.||||+|+..|+.+++++|++.|++++.+  +..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|
T Consensus        56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A  131 (351)
T 3utm_A           56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHEA  131 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHH
Confidence            44678999999999999999999999999986  89999999999999999999999998  788999999999999999


Q ss_pred             HHHHhhhh-hhccccccCccCCC---------------------------------------------------CCCccc
Q 014994          178 SEIKSLRV-KSNQESEANIAEVD---------------------------------------------------PMHAKI  205 (415)
Q Consensus       178 ~~~~~~~~-~~~~~~~~~~~~~~---------------------------------------------------~~~~~g  205 (415)
                      +..+...+ ..++..|+++...+                                                   ..+..|
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  211 (351)
T 3utm_A          132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH  211 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTC
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCC
Confidence            98887776 44446777655433                                                   234568


Q ss_pred             cHHHHHHHhc---CCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHc
Q 014994          206 VRRIHKALHS---DDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR  278 (415)
Q Consensus       206 ~t~L~~A~~~---g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~  278 (415)
                      .||||+|+..   +..+++++|++.| ++   |..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..
T Consensus       212 ~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~t~L~~A~~~  290 (351)
T 3utm_A          212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRAALA  290 (351)
T ss_dssp             CCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHc
Confidence            8999999999   5589999999999 54   57899999999999999999999986 999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          279 NEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       279 ~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      |+.++|++|+++|+|++.+|..|+||+|+|    +.+++++|.+.+..
T Consensus       291 ~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~  334 (351)
T 3utm_A          291 GHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM  334 (351)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence            999999999999999999999999999998    55777777776643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.5e-36  Score=270.58  Aligned_cols=211  Identities=14%  Similarity=0.011  Sum_probs=179.6

Q ss_pred             CcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhc-c
Q 014994          111 QMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSN-Q  189 (415)
Q Consensus       111 g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~-~  189 (415)
                      |+.+++++|++.|++++.. .|..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+..+...+... +
T Consensus         2 g~~~~i~~Ll~~g~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccc-cCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5667777888888888763 367788888888888888888888887  66777788888888888877776665333 3


Q ss_pred             ccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccC
Q 014994          190 ESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD  265 (415)
Q Consensus       190 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d  265 (415)
                      ..++  ..++..+..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |++++.+|
T Consensus        79 ~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~  155 (223)
T 2f8y_A           79 RNRA--TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQN  155 (223)
T ss_dssp             HBTT--SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             HcCC--CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcC
Confidence            3332  245556778999999999999999999999999 44   56799999999999999999999996 99999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          266 ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       266 ~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|...
T Consensus       156 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          156 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.4e-36  Score=268.46  Aligned_cols=222  Identities=17%  Similarity=0.141  Sum_probs=195.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccc-cCCCChHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFC-LERELPDEV  176 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~-~~g~tpl~~  176 (415)
                      +.+.++|+.|+..|+.+++++|++.|++++..  +..|.||||+|+..|+.+++++|++.  +.+++... ..|.|||++
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHHH
T ss_pred             cccchHHHHHHHcCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhHH
Confidence            45667899999999999999999999999886  89999999999999999999999998  55666444 459999999


Q ss_pred             HHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCC-HHHH
Q 014994          177 SSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCS-PKVF  250 (415)
Q Consensus       177 a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~-~~~v  250 (415)
                      |+..+...+ ..++..|+++.   ..+..|.||||+|+..|+.+++++|+++| ++   +..|.||||+|+..++ .+++
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             HHHcCCHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH
Confidence            998888776 44446665554   45578999999999999999999999999 44   5789999999997776 7788


Q ss_pred             HHHHhcCCCCccccCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          251 KEVLNMDSAGLNLKDA-RGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       251 ~~Ll~~~gadvn~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      +.|+.. |++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|+..
T Consensus       160 ~~L~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          160 RLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHHT-TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHhc-CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            888875 899999997 9999999999999999999999999999999999999999999999999999999998753

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-35  Score=273.44  Aligned_cols=196  Identities=18%  Similarity=0.120  Sum_probs=175.9

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCC-CCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSN-LDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRI  209 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~-~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L  209 (415)
                      |.+|.||||+|+..|+.+++++|++.++... ++..+..|.||||+|+..++..+ ..++..|+++.   ..+..|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---~~~~~g~tpL   82 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---VAERGGHTAL   82 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---CCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCHH
Confidence            8899999999999999999999999844322 78889999999999999988877 44457776654   5567999999


Q ss_pred             HHHHhcCCHHHHHHHHHCC-C--------------------------------------------------CCCCCchHH
Q 014994          210 HKALHSDDVELLKLLLDVS-N--------------------------------------------------VTLDDAYAL  238 (415)
Q Consensus       210 ~~A~~~g~~~~v~~Ll~~g-~--------------------------------------------------~~~~g~tpL  238 (415)
                      |+|+..|+.+++++|+++| +                                                  .+..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            9999999999999999976 2                                                  245789999


Q ss_pred             HHHHHCCCHHHHHHHHhcCCCCccccCC-CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchH
Q 014994          239 HYAAACCSPKVFKEVLNMDSAGLNLKDA-RGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDY  317 (415)
Q Consensus       239 ~~A~~~g~~~~v~~Ll~~~gadvn~~d~-~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v  317 (415)
                      |+|+..|+.+++++|++. |++++..+. .|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v  241 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA  241 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence            999999999999999997 899999986 499999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccc
Q 014994          318 IEASKQGQETNKDR  331 (415)
Q Consensus       318 ~~l~~~g~~~~~~~  331 (415)
                      ++|+++|++++...
T Consensus       242 ~~Ll~~ga~~~~~~  255 (282)
T 1oy3_D          242 RLLRAHGAPEPEDG  255 (282)
T ss_dssp             HHHHHTTCCCCCCC
T ss_pred             HHHHHcCCCcCcCC
Confidence            99999999987544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.1e-36  Score=279.93  Aligned_cols=205  Identities=20%  Similarity=0.133  Sum_probs=185.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .+.++||.|+..|+.+++++|++.|++++..  +..|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHH
Confidence            3678999999999999999999999999986  89999999999999999999999998  7899999999999999999


Q ss_pred             HHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC--C--------------------------
Q 014994          179 EIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS--N--------------------------  229 (415)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~--------------------------  229 (415)
                      ..++..+ ..++..|+++.   ..+..|.||||+|+..|+.+++++|+...  +                          
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  191 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN  191 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HcCCHHHHHHHHhCCCCCC---CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcc
Confidence            9888877 44446676554   45679999999999999999998877542  1                          


Q ss_pred             ---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 014994          230 ---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVA  306 (415)
Q Consensus       230 ---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~  306 (415)
                         .+..|.||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||
T Consensus       192 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  270 (299)
T 1s70_B          192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD  270 (299)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             hhhhcCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence               245799999999999999999999986 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc
Q 014994          307 ICRRM  311 (415)
Q Consensus       307 ~A~~~  311 (415)
                      +|+..
T Consensus       271 ~A~~~  275 (299)
T 1s70_B          271 VADED  275 (299)
T ss_dssp             SCCSG
T ss_pred             HHHHH
Confidence            99664

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8.6e-35  Score=275.93  Aligned_cols=219  Identities=18%  Similarity=0.100  Sum_probs=188.1

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccc-------------------------------cccCCChhHHHHHHHcCcH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGK-------------------------------ALVEDVLPILVAAFHCQLN  148 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-------------------------------~~~~~g~t~L~~A~~~g~~  148 (415)
                      +.||||+|+..|+.++|++|+++|++++.+                               ..|..|.||||+|+..|+.
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence            678999999999999999999999876542                               1267899999999999999


Q ss_pred             HHHHHHHHhhcCCCCC----------ccccCCCChHHHHHHHHhhhhhhc-c-ccccCccCCCCCCccccHHHHHHHhcC
Q 014994          149 MLRSYCIQRIAGSNLD----------NFCLERELPDEVSSEIKSLRVKSN-Q-ESEANIAEVDPMHAKIVRRIHKALHSD  216 (415)
Q Consensus       149 ~lv~~ll~~~~~~~~~----------~~~~~g~tpl~~a~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~t~L~~A~~~g  216 (415)
                      ++++++++.  +++++          ..+..|.||||+|+..++..+... + ..|++   ++..|..|.|+||.++..+
T Consensus       139 ~~~~~ll~~--ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad---~n~~d~~g~t~l~~~~~~~  213 (337)
T 4g8k_A          139 KALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD---VNACDNMGRNALIHALLSS  213 (337)
T ss_dssp             HHHHHHHHT--TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC---TTCCCTTSCCHHHHHHHHS
T ss_pred             HHHHHHHHc--CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC---cCccCCCCCcHHHHHHHHc
Confidence            999999998  44444          335578999999999888877443 3 34554   4556679999999887654


Q ss_pred             C----HHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014994          217 D----VELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLL  288 (415)
Q Consensus       217 ~----~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll  288 (415)
                      .    ..++++|+++| ++   |..|+||||+|+..|+.++++.|+...|+++|.+|.+|+||||+|+..|+.++|++||
T Consensus       214 ~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll  293 (337)
T 4g8k_A          214 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC  293 (337)
T ss_dssp             CTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3    46889999999 65   4678999999999999999999998779999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          289 SKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       289 ~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ++|||+|.+     ||||+|+..|+.++|++|+++|++++
T Consensus       294 ~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          294 KRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             TTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             HCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence            999999865     59999999999999999999999875

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=4e-35  Score=263.08  Aligned_cols=193  Identities=15%  Similarity=0.076  Sum_probs=173.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHh-CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHW-LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      +.||||+|+..|+.+++++|++. |++++.+  |..|.||||+|+..|+.+++++|++.++  ++..             
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~~~~-------------   65 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEAAP--ELVF-------------   65 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHCG--GGGG-------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHcCc--hhcc-------------
Confidence            45889999999999999999998 9999997  8999999999999999999999999833  2110             


Q ss_pred             HHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCCC----------------CCchHHHHH
Q 014994          179 EIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVTL----------------DDAYALHYA  241 (415)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~----------------~g~tpL~~A  241 (415)
                                       ...+..|..|.||||+|+..|+.+++++|+++| +++.                .|+||||+|
T Consensus        66 -----------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  128 (232)
T 2rfa_A           66 -----------------EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA  128 (232)
T ss_dssp             -----------------CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHH
T ss_pred             -----------------ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHH
Confidence                             122345678999999999999999999999999 5432                699999999


Q ss_pred             HHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHH----HHHHhCCCCC------CCCCCCCCcHHHHHHHc
Q 014994          242 AACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVM----VTLLSKGARA------SETTSDGQTAVAICRRM  311 (415)
Q Consensus       242 ~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v----~~Ll~~Gadi------n~~d~~g~tpL~~A~~~  311 (415)
                      +..|+.+++++|++. |+|+|.+|..|+||||+|+..|+.+++    ++|+++|+++      +.+|..|+||||+|+..
T Consensus       129 ~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~  207 (232)
T 2rfa_A          129 ACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE  207 (232)
T ss_dssp             HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence            999999999999986 999999999999999999999999988    9999999998      58999999999999999


Q ss_pred             CCcchHHHHHhcCCCc
Q 014994          312 TRRKDYIEASKQGQET  327 (415)
Q Consensus       312 ~~~~~v~~l~~~g~~~  327 (415)
                      |+.++++.|+++|..+
T Consensus       208 g~~~~v~~Ll~~g~~~  223 (232)
T 2rfa_A          208 GNIVMFQHLMQKRKHI  223 (232)
T ss_dssp             TCHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcCccc
Confidence            9999999999998654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.9e-36  Score=278.57  Aligned_cols=212  Identities=10%  Similarity=-0.068  Sum_probs=189.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .+.||||+|+..|+.+++++|++.|++++.+    +|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+
T Consensus        30 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           30 HGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAV  103 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHH
Confidence            4678999999999999999999999999884    599999999999999999999998  7889999999999999999


Q ss_pred             HHHhhhh-hhccccccCccCCCCCCccc-cHHHHHHHhcCCHHHHHHHHHCC-CC-CC-CCchHHHHHHHCCCHHHHHHH
Q 014994          179 EIKSLRV-KSNQESEANIAEVDPMHAKI-VRRIHKALHSDDVELLKLLLDVS-NV-TL-DDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g-~~-~~-~g~tpL~~A~~~g~~~~v~~L  253 (415)
                      ..++..+ ..++..|+++.   ..+..| .||||+|+..|+.+++++|+++| +. +. .|+||||+|+..|+.+++++|
T Consensus       104 ~~g~~~~v~~Ll~~ga~~~---~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          104 DSGNMQTVKLFVKKNWRLM---FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HTTCHHHHHHHHHHCGGGG---GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhcCCCCC---ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence            8888776 44456676654   455678 79999999999999999999999 33 44 789999999999999999999


Q ss_pred             HhcCCCCccccCCCCChH-HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          254 LNMDSAGLNLKDARGRTV-LHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       254 l~~~gadvn~~d~~g~Tp-Lh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      ++. |+++|.+|..|+|| ||+|+..|+.+++++|+++|+|++..|.       .|+..|+.+++++|+++|.++
T Consensus       181 l~~-gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          181 LDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             HHH-HHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred             HHc-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence            997 89999999999998 9999999999999999999999999883       567789999999999998754

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.8e-35  Score=268.24  Aligned_cols=201  Identities=18%  Similarity=0.153  Sum_probs=173.5

Q ss_pred             hhHHHHHHHHHcCcHH----HHHHHHHhCCCccc----ccccCCChhHHHHHHHc---CcHHHHHHHHHhhcCCCCCccc
Q 014994           99 YVIELMYASAALQMKD----RVFLLQHWLLGMVG----KALVEDVLPILVAAFHC---QLNMLRSYCIQRIAGSNLDNFC  167 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~~~g~t~L~~A~~~---g~~~lv~~ll~~~~~~~~~~~~  167 (415)
                      ++.|+||.|+..|+.+    ++++|++.|++++.    +  |..|.||||+|+..   |+.+++++|++.++  +++..+
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~--d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~--~~~~~~   76 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE--GSTGKTCLMKAVLNLQDGVNACIMPLLQIDK--DSGNPK   76 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSB--TTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH--HTTCSS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccC--CCCCCCHHHHHHHccccchHHHHHHHHhcCC--cccchh
Confidence            3679999999999997    66788889999987    5  89999999999999   99999999999844  222111


Q ss_pred             cCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC---CC----------
Q 014994          168 LERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT---LD----------  233 (415)
Q Consensus       168 ~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~---~~----------  233 (415)
                      .                   ..    + ......|..|.||||+|+..|+.+++++|+++| +++   ..          
T Consensus        77 ~-------------------~~----~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~  132 (256)
T 2etb_A           77 P-------------------LV----N-AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTC  132 (256)
T ss_dssp             C-------------------GG----G-CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSC
T ss_pred             h-------------------hc----c-cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccccccccc
Confidence            0                   00    0 112234567999999999999999999999999 554   33          


Q ss_pred             ---CchHHHHHHHCCCHHHHHHHHhc--CCCCccccCCCCChHHHHHHH--cCCHH-------HHHHHHhCCCCC-----
Q 014994          234 ---DAYALHYAAACCSPKVFKEVLNM--DSAGLNLKDARGRTVLHVAAR--RNEPE-------VMVTLLSKGARA-----  294 (415)
Q Consensus       234 ---g~tpL~~A~~~g~~~~v~~Ll~~--~gadvn~~d~~g~TpLh~A~~--~~~~~-------~v~~Ll~~Gadi-----  294 (415)
                         |+||||+|+..|+.+++++|++.  +|+++|.+|..|+||||+|+.  .++.+       ++++|+++|+++     
T Consensus       133 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~  212 (256)
T 2etb_A          133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ  212 (256)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc
Confidence               99999999999999999999993  499999999999999999999  88888       999999999999     


Q ss_pred             --CCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          295 --SETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       295 --n~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                        +.+|..|+||||+|+..|+.+++++|+++|..+
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence              999999999999999999999999999998754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.9e-35  Score=267.88  Aligned_cols=196  Identities=18%  Similarity=0.171  Sum_probs=145.9

Q ss_pred             CcccccccCCChhHHHHHHHcC-------------cHHHHHHHHHhhcCCCCC-ccccCCCChHHHHHHHHhhhh-hhcc
Q 014994          125 GMVGKALVEDVLPILVAAFHCQ-------------LNMLRSYCIQRIAGSNLD-NFCLERELPDEVSSEIKSLRV-KSNQ  189 (415)
Q Consensus       125 ~~~~~~~~~~g~t~L~~A~~~g-------------~~~lv~~ll~~~~~~~~~-~~~~~g~tpl~~a~~~~~~~~-~~~~  189 (415)
                      |+|.+  |.+|.||||+|+..|             +.+++++|++.  +.+++ ..+..|.||||+|+..+...+ ..++
T Consensus         2 dvn~~--d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   77 (253)
T 1yyh_A            2 DVNVR--GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLL   77 (253)
T ss_dssp             ------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCC--CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            56665  899999999999988             89999999998  55665 458999999999999888877 4445


Q ss_pred             ccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC--CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCcccc
Q 014994          190 ESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS--NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK  264 (415)
Q Consensus       190 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~  264 (415)
                      ..|+++   +..|..|.||||+|+..|+.+++++|++.|  ++   +..|.||||+|+..|+.+++++|+.. |+++|.+
T Consensus        78 ~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~  153 (253)
T 1yyh_A           78 EASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAV  153 (253)
T ss_dssp             HTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCB
T ss_pred             HcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCc
Confidence            666554   455679999999999999999999999998  33   56899999999999999999999996 9999999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       265 d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|+++.
T Consensus       154 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             CTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.3e-34  Score=251.15  Aligned_cols=187  Identities=17%  Similarity=0.093  Sum_probs=167.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCC-CcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLL-GMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      +..++||.|+..|+.+.++.|+..+. +++..  +..|.||||+|+..|+.+++++|++.  +.++              
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~--------------   65 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEV--DTEGNTPLNIAVHNNDIEIAKALIDR--GADI--------------   65 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCT--------------
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCC--------------
Confidence            35678999999999999998888776 88886  88999999999999999999999987  4332              


Q ss_pred             HHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC--C---CCCCCchHHHHHHHCCCHHHHHH
Q 014994          178 SEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS--N---VTLDDAYALHYAAACCSPKVFKE  252 (415)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~---~~~~g~tpL~~A~~~g~~~~v~~  252 (415)
                                           +..+..|.||||+|+..|+.+++++|++.+  +   .|..|.||||+|+..|+.+++++
T Consensus        66 ---------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  124 (201)
T 3hra_A           66 ---------------------NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL  124 (201)
T ss_dssp             ---------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHH
T ss_pred             ---------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHH
Confidence                                 234467899999999999999999999554  3   35679999999999999999999


Q ss_pred             HHhcCCCCccccCCCCChHHHHHHHcCC-----HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          253 VLNMDSAGLNLKDARGRTVLHVAARRNE-----PEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       253 Ll~~~gadvn~~d~~g~TpLh~A~~~~~-----~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      |++..+++++.+|..|+||||+|+..++     .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       125 Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9998339999999999999999999998     99999999999999999999999999999999999999999887

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.4e-34  Score=257.01  Aligned_cols=197  Identities=18%  Similarity=0.172  Sum_probs=178.8

Q ss_pred             CcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCc
Q 014994          125 GMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHA  203 (415)
Q Consensus       125 ~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~  203 (415)
                      +++.+  +.+|.||||+|+..|+.+++++|++.  +.+++..+..|.||||+|+..+...+ ..++..|++   ++..+.
T Consensus         3 ~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~   75 (237)
T 3b7b_A            3 NFKME--HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKDA   75 (237)
T ss_dssp             CCCCS--SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCCT
T ss_pred             Ccccc--cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCC
Confidence            44444  89999999999999999999999998  77899999999999999998888777 444466654   445667


Q ss_pred             cccHHHHHHHhcCCHHHHHHHHHCC--C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHc
Q 014994          204 KIVRRIHKALHSDDVELLKLLLDVS--N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR  278 (415)
Q Consensus       204 ~g~t~L~~A~~~g~~~~v~~Ll~~g--~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~  278 (415)
                      .|.||||+|+..|+.+++++|++.|  +   .+..|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..
T Consensus        76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~  154 (237)
T 3b7b_A           76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFS  154 (237)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHC
Confidence            8999999999999999999999998  3   356799999999999999999999996 899999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccc
Q 014994          279 NEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNK  329 (415)
Q Consensus       279 ~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~  329 (415)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.|+++..
T Consensus       155 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             CCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc
Confidence            999999999999999999999999999999999999999999999998753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.1e-33  Score=254.88  Aligned_cols=195  Identities=19%  Similarity=0.127  Sum_probs=175.0

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHh--hcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQR--IAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRR  208 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~--~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~  208 (415)
                      |.+|.||||+|+..|+.+++++|++.  ..+.+++..+..|.||||+|+..+...+ ..+++.|+++.   ..+..|.||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~   82 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTA   82 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc---ccCCCCCCH
Confidence            88999999999999999999999973  2377899999999999999998888877 44446665544   456799999


Q ss_pred             HHHHHhcCCHHHHHHHHHCC-----C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccC-CCCChHHHHHHHcC
Q 014994          209 IHKALHSDDVELLKLLLDVS-----N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD-ARGRTVLHVAARRN  279 (415)
Q Consensus       209 L~~A~~~g~~~~v~~Ll~~g-----~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d-~~g~TpLh~A~~~~  279 (415)
                      ||+|+..|+.+++++|++.+     +   .+..|+||||+|+..|+.+++++|++. |++++..+ ..|+||||+|+..|
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcC
Confidence            99999999999999999987     2   246799999999999999999999996 89999999 89999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcccc
Q 014994          280 EPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKD  330 (415)
Q Consensus       280 ~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~~  330 (415)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.|++++..
T Consensus       162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  212 (241)
T 1k1a_A          162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  212 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc
Confidence            999999999999999999999999999999999999999999999987643

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-35  Score=281.74  Aligned_cols=221  Identities=14%  Similarity=0.103  Sum_probs=191.3

Q ss_pred             hhhhHHHHHHHHHcCcHHHHHHHHHhCCCccccccc-CCChhHHHHHHHcCcHHHHHHHH--------HhhcCCCCCccc
Q 014994           97 VNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALV-EDVLPILVAAFHCQLNMLRSYCI--------QRIAGSNLDNFC  167 (415)
Q Consensus        97 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~g~t~L~~A~~~g~~~lv~~ll--------~~~~~~~~~~~~  167 (415)
                      ...+.|+||.|+..+. +++++|+.  .+++..  | ..|.||||+|+..|+.+++++|+        +.  +.+++..|
T Consensus        91 ~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~--d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~d  163 (373)
T 2fo1_E           91 EPESPIKLHTEAAGSY-AITEPITR--ESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAMD  163 (373)
T ss_dssp             ---CCCHHHHHHHSSS-CCCSCCST--TTTTTC--CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCCC
T ss_pred             CCCCccHHHHHhcCCc-hHHHHhcc--cccccc--CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCCC
Confidence            4456789999999665 78887765  455554  5 78999999999999987777766        55  88999999


Q ss_pred             cCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC----C---CCCCCchHHH
Q 014994          168 LERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS----N---VTLDDAYALH  239 (415)
Q Consensus       168 ~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~---~~~~g~tpL~  239 (415)
                      ..|.||||+|+..++..+ ..++..|+++.   ..+..|.||||+|+..|+.+++++|+++|    +   .|..|+||||
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~  240 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADPT---IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  240 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSC---CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCCc---ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence            999999999999988877 44557776654   45679999999999999999999999986    3   4678999999


Q ss_pred             HHHHCC---CHHHHHHHHhcCCCCccc--------cCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHH
Q 014994          240 YAAACC---SPKVFKEVLNMDSAGLNL--------KDARGRTVLHVAARRNEPEVMVTLLSKG-ARASETTSDGQTAVAI  307 (415)
Q Consensus       240 ~A~~~g---~~~~v~~Ll~~~gadvn~--------~d~~g~TpLh~A~~~~~~~~v~~Ll~~G-adin~~d~~g~tpL~~  307 (415)
                      +|+..|   +.+++++|++. |++++.        .|..|+||||+|+..|+.++|++|+++| +++|.+|..|+||||+
T Consensus       241 ~A~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~  319 (373)
T 2fo1_E          241 IVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  319 (373)
T ss_dssp             HHHHSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHH
Confidence            999998   89999999997 899986        6779999999999999999999999885 9999999999999999


Q ss_pred             HHHcCCcchHHHHHhcCCCcc
Q 014994          308 CRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       308 A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      |+..|+.+++++|++.|++++
T Consensus       320 A~~~g~~~iv~~Ll~~gad~~  340 (373)
T 2fo1_E          320 AAQEGRIEVVMYLIQQGASVE  340 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSS
T ss_pred             HHHcCCHHHHHHHHHcCCCcc
Confidence            999999999999999999875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=263.91  Aligned_cols=196  Identities=20%  Similarity=0.114  Sum_probs=152.3

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcC------CCCCccccCCCChHHHHHHHHhhh--hhhccccccCccCCCCCCc
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAG------SNLDNFCLERELPDEVSSEIKSLR--VKSNQESEANIAEVDPMHA  203 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~------~~~~~~~~~g~tpl~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~  203 (415)
                      |..+.+||+.|+..|+.++|++|++.++.      ..++..+..|.|||+.|.......  +..++..|++   +|..|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad---vn~~d~   84 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG---VNVTSQ   84 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC---TTCCCT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC---CCCcCC
Confidence            66789999999999999999999987432      135667888999999997665442  3445566655   456678


Q ss_pred             cccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcC
Q 014994          204 KIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRN  279 (415)
Q Consensus       204 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~  279 (415)
                      +|.||||+|+..|+.++|++|++.| ++   +..|.||||+|+..++.++++.|++. |+++|.+|..|+||||+|+..|
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCC
Confidence            9999999999999999999999999 44   57899999999999999999999986 8999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccccc
Q 014994          280 EPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDR  331 (415)
Q Consensus       280 ~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~~~  331 (415)
                      +.++|++||++|+|+|.++..|+||||+|+..|+.++|++|++.|++++...
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d  215 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN  215 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            9999999999999999999999999999999999999999999999986443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.5e-33  Score=251.94  Aligned_cols=195  Identities=17%  Similarity=0.051  Sum_probs=171.0

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHH
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKAL  213 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~  213 (415)
                      |.||||+|+..|+.+++++|++.+. ...+..+..|.||||+|+..+...+ ..++..|++.......+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCc-cccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            6899999999999999999999843 2344589999999999999888777 4444666444333336679999999999


Q ss_pred             hcCCHHHHHHHHHCC---C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          214 HSDDVELLKLLLDVS---N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       214 ~~g~~~~v~~Ll~~g---~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      ..|+.+++++|+++|   +   .+..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999997   2   356799999999999999999999996 999999999999999999999999999999


Q ss_pred             HhCC-CCCCCCCCCCCcHHHHHHHcCCcchHHHHH-hcCCCccccc
Q 014994          288 LSKG-ARASETTSDGQTAVAICRRMTRRKDYIEAS-KQGQETNKDR  331 (415)
Q Consensus       288 l~~G-adin~~d~~g~tpL~~A~~~~~~~~v~~l~-~~g~~~~~~~  331 (415)
                      +++| ++++.+|..|+||||+|+..|+.++++.|+ +.|+++....
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~  205 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD  205 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence            9999 999999999999999999999999999999 8999876433

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.4e-33  Score=238.75  Aligned_cols=155  Identities=25%  Similarity=0.231  Sum_probs=103.7

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIK  181 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~  181 (415)
                      +.|+.|+..|+.++|++|++.|+++|.+  |.+|.||||+|+..++.++++++++.  +.+                   
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~--d~~g~t~l~~a~~~~~~~~~~~ll~~--gad-------------------   62 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNAS--DSDGRTPLHHAAENGHKEVVKLLISK--GAD-------------------   62 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCC-------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhc--ccc-------------------
Confidence            4577777777777777777777777775  77777777777777777777777765  322                   


Q ss_pred             hhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcC
Q 014994          182 SLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMD  257 (415)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~  257 (415)
                                      ++.+|.+|.||||+|+..|+.++|++|+++| ++   |..|+||||+|+..|+.++|++|++. 
T Consensus        63 ----------------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-  125 (169)
T 4gpm_A           63 ----------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-  125 (169)
T ss_dssp             ----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred             ----------------hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-
Confidence                            2233446667777777777777777777776 43   45666777777777777777777764 


Q ss_pred             CCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 014994          258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE  296 (415)
Q Consensus       258 gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~  296 (415)
                      |+|++.+|.+|+||||+|+..|+.+++++|+++||+++.
T Consensus       126 gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          126 GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            677777777777777777777777777777777776653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.1e-33  Score=238.09  Aligned_cols=153  Identities=29%  Similarity=0.327  Sum_probs=139.2

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcC
Q 014994          137 PILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSD  216 (415)
Q Consensus       137 t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  216 (415)
                      ++|+.|+..|+.++|+.|++.  ++++                                   |.+|.+|.||||+|+..+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadv-----------------------------------n~~d~~g~t~l~~a~~~~   48 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN--GADV-----------------------------------NASDSDGRTPLHHAAENG   48 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT--TCCT-----------------------------------TCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCC-----------------------------------CCcCCCCCCHHHHHHHcC
Confidence            579999999999999999997  4333                                   345568999999999999


Q ss_pred             CHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 014994          217 DVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA  292 (415)
Q Consensus       217 ~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Ga  292 (415)
                      +.+++++|++.| ++   |..|+||||+|+..|+.++|++||+. |+|+|.+|.+|+||||+|+..|+.++|++|+++|+
T Consensus        49 ~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga  127 (169)
T 4gpm_A           49 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA  127 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999 54   57899999999999999999999996 99999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          293 RASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       293 din~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      |++.+|.+|+||||+|+..|+.+++++|+++|++.
T Consensus       128 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            99999999999999999999999999999999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.4e-34  Score=260.42  Aligned_cols=193  Identities=16%  Similarity=0.165  Sum_probs=157.4

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcC--CCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAG--SNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRR  208 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~--~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~  208 (415)
                      |.+|.||||+|+..|+.+++++|++....  .+++..+..|.||||+|+..+...+ ..++..|+++   +..+..|.||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~   81 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTP   81 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCH
Confidence            56677777777777776666666665332  2566667777777777776666655 3333555443   4455789999


Q ss_pred             HHHHHhcCCHHHHHHHHHCC-C---------CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCC-CCChHHHHHHH
Q 014994          209 IHKALHSDDVELLKLLLDVS-N---------VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDA-RGRTVLHVAAR  277 (415)
Q Consensus       209 L~~A~~~g~~~~v~~Ll~~g-~---------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~-~g~TpLh~A~~  277 (415)
                      ||+|+..|+.+++++|++.| +         .+..|.||||+|+..|+.+++++|++. |++++.++. .|+||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence            99999999999999999987 2         246799999999999999999999997 899999998 99999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          278 RNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       278 ~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.|+++.
T Consensus       161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             cCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            999999999999999999999999999999999999999999999999764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.4e-34  Score=264.18  Aligned_cols=217  Identities=11%  Similarity=0.000  Sum_probs=184.6

Q ss_pred             cCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhc
Q 014994          110 LQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSN  188 (415)
Q Consensus       110 ~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~  188 (415)
                      .+..+++++|.+.  +++.+  |.+|.||||+|+..|+.+++++|++.  +.+++..  +|.||||+|+..++..+ ..+
T Consensus        10 ~~~~~v~~lL~~~--~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A           10 WKSKQLKSFLSSK--DTFKA--DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             CCHHHHHHHHHST--TTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             cCHHHHHHHHHhC--CCCcc--CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHHHcCCHHHHHHH
Confidence            4556777777766  46665  89999999999999999999999998  6677766  59999999988887776 444


Q ss_pred             cccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCC-chHHHHHHHCCCHHHHHHHHhcCCCCccc
Q 014994          189 QESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDD-AYALHYAAACCSPKVFKEVLNMDSAGLNL  263 (415)
Q Consensus       189 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g-~tpL~~A~~~g~~~~v~~Ll~~~gadvn~  263 (415)
                      +..|+++   +..|..|.||||+|+..|+.+++++|+++| ++   +..| .||||+|+..|+.+++++|+.. |+++..
T Consensus        82 l~~ga~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~  157 (285)
T 3kea_A           82 LFSGLDD---SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE-IPSTFD  157 (285)
T ss_dssp             HHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT-SCTTCC
T ss_pred             HHCCCCC---CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccc
Confidence            4667664   456679999999999999999999999999 43   5677 7999999999999999999986 787733


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCcchHHHHHhcCCCcccc------cccHHH
Q 014994          264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA-VAICRRMTRRKDYIEASKQGQETNKD------RLCIDV  336 (415)
Q Consensus       264 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tp-L~~A~~~~~~~~v~~l~~~g~~~~~~------~~~~~~  336 (415)
                      . ..|+||||+|+..|+.+++++|+++|+++|.+|..|+|| ||+|+..|+.+++++|++.|++++..      ..+.++
T Consensus       158 ~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~a~~~~~~~i  236 (285)
T 3kea_A          158 L-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEI  236 (285)
T ss_dssp             C-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGGGGTTTCHHH
T ss_pred             c-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChhhhhcCCHHH
Confidence            3 289999999999999999999999999999999999998 99999999999999999999998633      334555


Q ss_pred             HHH
Q 014994          337 LER  339 (415)
Q Consensus       337 ~~~  339 (415)
                      ++.
T Consensus       237 v~~  239 (285)
T 3kea_A          237 AKM  239 (285)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-33  Score=262.11  Aligned_cols=221  Identities=14%  Similarity=0.100  Sum_probs=188.5

Q ss_pred             HHHHcCcHHHHHHHHHhCCCcccc-------cccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994          106 ASAALQMKDRVFLLQHWLLGMVGK-------ALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus       106 ~A~~~g~~~~v~~Ll~~g~~~~~~-------~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .++..+..+.+..++....++...       ..+..|.||||.|+..|+.++|++|++.  +.+++..+..|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH
Confidence            356666777777677665554321       1145788999999999999999999998  7889999999999999999


Q ss_pred             HHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHH
Q 014994          179 EIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~L  253 (415)
                      ..++..+ ..++..|+++   +..|..|.||||+|+..|+.++|++|+++| ++   |..|.||||+|+..|+.++++.+
T Consensus        82 ~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l  158 (299)
T 1s70_B           82 IDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE  158 (299)
T ss_dssp             HTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHH
Confidence            9888877 4445667554   456679999999999999999999999999 44   67899999999999999999988


Q ss_pred             HhcCCCCccc--------------------------cCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 014994          254 LNMDSAGLNL--------------------------KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI  307 (415)
Q Consensus       254 l~~~gadvn~--------------------------~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~  307 (415)
                      +...|++++.                          .+..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+
T Consensus       159 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~  238 (299)
T 1s70_B          159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHA  238 (299)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred             HhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            8766777654                          56789999999999999999999999999999999999999999


Q ss_pred             HHHcCCcchHHHHHhcCCCccccc
Q 014994          308 CRRMTRRKDYIEASKQGQETNKDR  331 (415)
Q Consensus       308 A~~~~~~~~v~~l~~~g~~~~~~~  331 (415)
                      |+..|+.+++++|++.|+++....
T Consensus       239 A~~~~~~~~v~~Ll~~gad~~~~d  262 (299)
T 1s70_B          239 AAHWGKEEACRILVENLCDMEAVN  262 (299)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHhcCCHHHHHHHHHcCCCCCCcC
Confidence            999999999999999999876433

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=5e-34  Score=262.57  Aligned_cols=206  Identities=18%  Similarity=0.127  Sum_probs=169.1

Q ss_pred             hhhhhHHHHHHHHHcCcHHHHHHHHH----hCCCcccc--cccCCChhHHHHHHHc---CcHHHHHHHHHhhcCCCCCcc
Q 014994           96 SVNYVIELMYASAALQMKDRVFLLQH----WLLGMVGK--ALVEDVLPILVAAFHC---QLNMLRSYCIQRIAGSNLDNF  166 (415)
Q Consensus        96 ~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~--~~~~~g~t~L~~A~~~---g~~~lv~~ll~~~~~~~~~~~  166 (415)
                      ....+.|+||+|+..|+.++|+.|++    .+++++..  ..+..|.||||+|+.+   |+.+++++|++.++.  .+..
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~--~~~~   86 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK--TDSL   86 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH--TTCH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc--ccch
Confidence            34568899999999999998887776    45555421  1267899999999987   999999999998542  1100


Q ss_pred             ccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC---C----------
Q 014994          167 CLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT---L----------  232 (415)
Q Consensus       167 ~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~---~----------  232 (415)
                                         .....     ......|..|.||||+|+..|+.++|++|+++| +++   .          
T Consensus        87 -------------------~~~i~-----~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~  142 (273)
T 2pnn_A           87 -------------------KQFVN-----ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGR  142 (273)
T ss_dssp             -------------------HHHHT-----CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSS
T ss_pred             -------------------hHHhh-----cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccc
Confidence                               00000     112235568999999999999999999999999 553   3          


Q ss_pred             ----CCchHHHHHHHCCCHHHHHHHHhc--CCCCccccCCCCChHHHHHHHcCC---------HHHHHHHHhCCCCCC--
Q 014994          233 ----DDAYALHYAAACCSPKVFKEVLNM--DSAGLNLKDARGRTVLHVAARRNE---------PEVMVTLLSKGARAS--  295 (415)
Q Consensus       233 ----~g~tpL~~A~~~g~~~~v~~Ll~~--~gadvn~~d~~g~TpLh~A~~~~~---------~~~v~~Ll~~Gadin--  295 (415)
                          .|+||||+|+..|+.+++++||+.  +|+++|.+|..|+||||+|+..|+         .+++++|+++|+++|  
T Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~  222 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT  222 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccc
Confidence                599999999999999999999993  499999999999999999999998         899999999999997  


Q ss_pred             -----CCCCCCCcHHHHHHHcCCcchHHHHHhcCC-Cc
Q 014994          296 -----ETTSDGQTAVAICRRMTRRKDYIEASKQGQ-ET  327 (415)
Q Consensus       296 -----~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~-~~  327 (415)
                           .+|..|+||||+|+..|+.+++++|+++|+ +|
T Consensus       223 ~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred             cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence                 489999999999999999999999999998 55

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.9e-33  Score=256.64  Aligned_cols=203  Identities=15%  Similarity=0.154  Sum_probs=170.9

Q ss_pred             hhHHHHHHHHHcCcHHH----HHHHHHhCCCcccccc--cCCChhHHHHHH---HcCcHHHHHHHHHhhcCCCCCccccC
Q 014994           99 YVIELMYASAALQMKDR----VFLLQHWLLGMVGKAL--VEDVLPILVAAF---HCQLNMLRSYCIQRIAGSNLDNFCLE  169 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~--~~~g~t~L~~A~---~~g~~~lv~~ll~~~~~~~~~~~~~~  169 (415)
                      +..++||.|+..|+.+.    +++|++.|++++....  +..|.||||+|+   ..|+.+++++|++.++.  .+...  
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~--~~~~~--   79 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK--TGNMR--   79 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH--TTCHH--
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc--ccchH--
Confidence            56789999999999995    5555569999987521  277999999999   67999999999998442  11000  


Q ss_pred             CCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC-----------------
Q 014994          170 RELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT-----------------  231 (415)
Q Consensus       170 g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~-----------------  231 (415)
                                  .+     .     ...++..|..|.||||+|+..|+.++|++|+++| +++                 
T Consensus        80 ------------~~-----~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  137 (260)
T 3jxi_A           80 ------------EF-----I-----NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF  137 (260)
T ss_dssp             ------------HH-----H-----TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSC
T ss_pred             ------------hh-----h-----cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccc
Confidence                        00     0     0223445668999999999999999999999999 553                 


Q ss_pred             CCCchHHHHHHHCCCHHHHHHHHhc--CCCCccccCCCCChHHHHHHHcCC---------HHHHHHHHhCCCCC------
Q 014994          232 LDDAYALHYAAACCSPKVFKEVLNM--DSAGLNLKDARGRTVLHVAARRNE---------PEVMVTLLSKGARA------  294 (415)
Q Consensus       232 ~~g~tpL~~A~~~g~~~~v~~Ll~~--~gadvn~~d~~g~TpLh~A~~~~~---------~~~v~~Ll~~Gadi------  294 (415)
                      ..|+||||+|+..|+.+++++|++.  +|+++|.+|..|+||||+|+..++         .+++++|+++|+++      
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~  217 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL  217 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence            3699999999999999999999993  489999999999999999998887         79999999999999      


Q ss_pred             -CCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          295 -SETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       295 -n~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                       +.+|..|+||||+|+..|+.+++++|+++|..+
T Consensus       218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence             679999999999999999999999999998764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.3e-33  Score=269.01  Aligned_cols=195  Identities=12%  Similarity=0.052  Sum_probs=173.9

Q ss_pred             CCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCC
Q 014994          124 LGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMH  202 (415)
Q Consensus       124 ~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~  202 (415)
                      .+++..  |..|.||||+|+..|+.++|++|++.  +.+++..+..|.||||+|+..++..+ ..++..|++.     .+
T Consensus        11 ~~~~~~--d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~   81 (364)
T 3ljn_A           11 LNRIKS--DDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----SL   81 (364)
T ss_dssp             -----C--CHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----CC
T ss_pred             CCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----cc
Confidence            444443  88899999999999999999999998  78999999999999999999988877 4444666633     23


Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHHC----C-C--------------------CCCCCchHHHHHHHCC--CHHHHHHHHh
Q 014994          203 AKIVRRIHKALHSDDVELLKLLLDV----S-N--------------------VTLDDAYALHYAAACC--SPKVFKEVLN  255 (415)
Q Consensus       203 ~~g~t~L~~A~~~g~~~~v~~Ll~~----g-~--------------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~  255 (415)
                      .+|.||||+|+..|+.++|++|++.    | +                    .|..|.||||+|+..|  +.+++++|++
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ  161 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            4799999999999999999999998    4 2                    3457899999999999  9999999999


Q ss_pred             cCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGAR-----ASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       256 ~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gad-----in~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      . |+++|.+|..|+||||+|+..|+.++|++|+++|++     +|.+|..|+||||+|+..|+.+++++|++.|++++
T Consensus       162 ~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~  238 (364)
T 3ljn_A          162 L-GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN  238 (364)
T ss_dssp             H-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred             c-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7 899999999999999999999999999999999999     99999999999999999999999999999998875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.4e-32  Score=244.70  Aligned_cols=192  Identities=16%  Similarity=0.048  Sum_probs=173.5

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIH  210 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~  210 (415)
                      +..+.||||.|+..|+.++++.+++... ..++..+..|.||||+|+..+...+ ..++..|++   ++..|..|.||||
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~   78 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADK-SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLH   78 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCG-GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhch-hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC---CCCcCCCCCCHHH
Confidence            4567899999999999999999998743 3467789999999999999888877 444466654   4556679999999


Q ss_pred             HHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHH
Q 014994          211 KALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVT  286 (415)
Q Consensus       211 ~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~  286 (415)
                      +|+..|+.+++++|+++| ++   |..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++
T Consensus        79 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  157 (231)
T 3aji_A           79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHI  157 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            999999999999999999 44   57899999999999999999999986 89999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          287 LLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       287 Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      |+++|++++.+|..|.||||+|+..|+.+++++|++.|++++
T Consensus       158 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  199 (231)
T 3aji_A          158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY  199 (231)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Confidence            999999999999999999999999999999999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.4e-34  Score=258.82  Aligned_cols=207  Identities=12%  Similarity=0.025  Sum_probs=179.9

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCC----CcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLL----GMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPD  174 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl  174 (415)
                      .+.||||+|+..|+.+++++|++.+.    +++..  +..|.||||+|+..|+.+++++|++.  +.+++..+..|.|||
T Consensus         7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ--NNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPL   82 (236)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC--CTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCHH
T ss_pred             CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHH
Confidence            45688999999999999998888776    67775  88999999999999999999999998  788999999999999


Q ss_pred             HHHHHHHhhhhh-hccccccCc---cCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CC-CCchHHHHHHHCC
Q 014994          175 EVSSEIKSLRVK-SNQESEANI---AEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TL-DDAYALHYAAACC  245 (415)
Q Consensus       175 ~~a~~~~~~~~~-~~~~~~~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~-~g~tpL~~A~~~g  245 (415)
                      |+|+..+...+. .++..++++   ..++..+..|.||||+|+..|+.+++++|+++| ++   +. .|+||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999988887763 444555542   335667788999999999999999999999999 54   34 7999999999999


Q ss_pred             CHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCcHHHHHHH
Q 014994          246 SPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARAS--ETTSDGQTAVAICRR  310 (415)
Q Consensus       246 ~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin--~~d~~g~tpL~~A~~  310 (415)
                      +.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|++..  ..+..|.||.+.+..
T Consensus       163 ~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          163 NPDLVSLLLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             CHHHHHHHHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             CHHHHHHHHHc-CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            99999999996 99999999999999999999999999999999999876  788899998876554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.2e-32  Score=240.21  Aligned_cols=191  Identities=17%  Similarity=0.054  Sum_probs=171.8

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ..+.||||+|+..|+.+++++|++.|++++.+  +..|.||||+|+..|+.+++++|++.+ ..+++..+..|.||||+|
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A   99 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILA   99 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHBT-TSCTTCCCTTCCCHHHHH
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCcHHHHH
Confidence            34678999999999999999999999999986  899999999999999999999999973 237888999999999999


Q ss_pred             HHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHH
Q 014994          178 SEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKE  252 (415)
Q Consensus       178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~  252 (415)
                      +..+...+ ..++..|++   ++..|..|.||||+|+..|+.+++++|+++| ++   |..|.||||+|+..|+.+++++
T Consensus       100 ~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  176 (223)
T 2f8y_A          100 ARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV  176 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHhCcHHHHHHHHHcCCC---CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHH
Confidence            98887776 444466655   4556678999999999999999999999999 44   5789999999999999999999


Q ss_pred             HHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC
Q 014994          253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARAS  295 (415)
Q Consensus       253 Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin  295 (415)
                      |++. |++++.+|..|.||||+|+..++.+++++|+++|+...
T Consensus       177 Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          177 LLDH-FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHHc-CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            9996 89999999999999999999999999999999999764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-33  Score=266.14  Aligned_cols=196  Identities=15%  Similarity=-0.007  Sum_probs=161.2

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCCccc-ccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLGMVG-KALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEI  180 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~  180 (415)
                      +.+|+|+..+..+++++|++.|+++|. +  |..|.||||+|+..|+.++|++|++.  +++++..+..|.||||+|+..
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~--d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~~~  174 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPV--DEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKS  174 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCC--STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCccccc--CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHh
Confidence            456889999999999999999999998 6  89999999999999999999999998  789999999999999999886


Q ss_pred             Hh---hhh-hhccccccCccCCCCCCccccHHHHHHHh----cCCHHHHHHHHHC--------------------C-C--
Q 014994          181 KS---LRV-KSNQESEANIAEVDPMHAKIVRRIHKALH----SDDVELLKLLLDV--------------------S-N--  229 (415)
Q Consensus       181 ~~---~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~--------------------g-~--  229 (415)
                      ++   ... ..++..+.  ..++..|..|.||||+|+.    .|+.+++++|++.                    | +  
T Consensus       175 g~~~~~~~~~~ll~~~~--~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~  252 (327)
T 1sw6_A          175 VNNYDSGTFEALLDYLY--PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN  252 (327)
T ss_dssp             SHHHHTTCHHHHHHHHG--GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred             cccccHHHHHHHHHhhh--ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence            55   221 22222221  2456677899999999999    9999999999987                    5 3  


Q ss_pred             -CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 014994          230 -VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC  308 (415)
Q Consensus       230 -~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A  308 (415)
                       .+..|+||||+|+.      +++|+..   ++|.+|..|+||||+|+..|+.++|++||++|||++.+|.+|+||||+|
T Consensus       253 ~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          253 DKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             -------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             cccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence             35789999999985      8888875   6999999999999999999999999999999999999999999999999


Q ss_pred             HHcC
Q 014994          309 RRMT  312 (415)
Q Consensus       309 ~~~~  312 (415)
                      +..|
T Consensus       324 ~~~g  327 (327)
T 1sw6_A          324 AGLE  327 (327)
T ss_dssp             CC--
T ss_pred             HhcC
Confidence            8754

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=3e-32  Score=251.17  Aligned_cols=183  Identities=17%  Similarity=0.098  Sum_probs=161.0

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCC--cccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCC-CCCccccCCCChHHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLG--MVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGS-NLDNFCLERELPDEVSS  178 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~-~~~~~~~~g~tpl~~a~  178 (415)
                      +++|.|+..|+.+.++.+++.+.+  +|.+  |.+|.||||+|+..|+.+++++|++.  +. +++.             
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~--d~~g~T~Lh~A~~~g~~~~v~~Ll~~--g~~~~~~-------------  140 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIA--DSNGNTALHYSVSHANFPVVQQLLDS--GVCKVDK-------------  140 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--SCCCTTC-------------
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCC--CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCCC-------------
Confidence            456788889999999999888777  6664  89999999999999999999999997  32 3333             


Q ss_pred             HHHhhhhhhccccccCccCCCCCCccccHHHHHHH-----hcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHH
Q 014994          179 EIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAL-----HSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKV  249 (415)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~  249 (415)
                                            .+..|.||||+|+     ..++.+++++|++.| .   .+..|+||||+|+..|+.++
T Consensus       141 ----------------------~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~  198 (276)
T 4hbd_A          141 ----------------------QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDV  198 (276)
T ss_dssp             ----------------------CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ----------------------CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence                                  4455666677666     567889999999999 2   35679999999999999999


Q ss_pred             HHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          250 FKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS-KGARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       250 v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      |++|++. |+|+|.+|..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|+..|+.+++++|++++
T Consensus       199 v~~Ll~~-gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          199 VKALLAC-EADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHhC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999996 99999999999999999999999999999999 89999999999999999999999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.4e-31  Score=246.12  Aligned_cols=186  Identities=13%  Similarity=0.108  Sum_probs=146.3

Q ss_pred             hhhhHHHHHHHHHc---CcHHHHHHHHHhCCCc-------cc--ccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCC
Q 014994           97 VNYVIELMYASAAL---QMKDRVFLLQHWLLGM-------VG--KALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLD  164 (415)
Q Consensus        97 ~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~-------~~--~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~  164 (415)
                      ...+.||||+|+..   |+.+++++|++.|+++       +.  ...|..|.||||+|+..|+.+++++|++.  +.+++
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~--ga~~~  128 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQ  128 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTT
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcC
Confidence            45688999999987   9999999999998763       22  11256899999999999999999999998  77888


Q ss_pred             ccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHH---CC-CC---CCCCchH
Q 014994          165 NFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLD---VS-NV---TLDDAYA  237 (415)
Q Consensus       165 ~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~g-~~---~~~g~tp  237 (415)
                      ..+..+..                     .....+..+..|.||||+|+..|+.+++++|++   .| ++   |..|+||
T Consensus       129 ~~~~~~~~---------------------~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tp  187 (273)
T 2pnn_A          129 AAANGDFF---------------------KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV  187 (273)
T ss_dssp             CCBCSGGG---------------------SSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCH
T ss_pred             cccccccc---------------------ccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcH
Confidence            77765410                     011233455689999999999999999999999   88 44   6789999


Q ss_pred             HHHHHHCCC---------HHHHHHHHhcCCCCcc-------ccCCCCChHHHHHHHcCCHHHHHHHHhCCC-CCCCCCCC
Q 014994          238 LHYAAACCS---------PKVFKEVLNMDSAGLN-------LKDARGRTVLHVAARRNEPEVMVTLLSKGA-RASETTSD  300 (415)
Q Consensus       238 L~~A~~~g~---------~~~v~~Ll~~~gadvn-------~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Ga-din~~d~~  300 (415)
                      ||+|+..|+         .+++++|++. |+++|       .+|..|+||||+|+..|+.+++++|+++|| |+......
T Consensus       188 Lh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~  266 (273)
T 2pnn_A          188 LHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAA  266 (273)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhh
Confidence            999999988         7999999997 89997       489999999999999999999999999999 89888887


Q ss_pred             CCcHHH
Q 014994          301 GQTAVA  306 (415)
Q Consensus       301 g~tpL~  306 (415)
                      +.+|-+
T Consensus       267 ~~~~~~  272 (273)
T 2pnn_A          267 AHHHHH  272 (273)
T ss_dssp             ------
T ss_pred             hhhccC
Confidence            777644

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=9.5e-31  Score=227.68  Aligned_cols=156  Identities=18%  Similarity=0.153  Sum_probs=143.5

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      |..|.||||+|+..|+.+++++|++.++  +                                   ++..+..|.||||+
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~-----------------------------------~~~~~~~g~t~L~~   74 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFD--K-----------------------------------LEDKDIEGSTALIW   74 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHC--C-----------------------------------TTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhcc--c-----------------------------------cccccccCccHHHH
Confidence            7899999999999999999999999732  2                                   22345679999999


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      |+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|
T Consensus        75 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  153 (192)
T 2rfm_A           75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKL  153 (192)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999 44   56799999999999999999999986 999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCC
Q 014994          288 LSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQ  325 (415)
Q Consensus       288 l~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~  325 (415)
                      +++|++++.+|..|.||||+|+..|+.+++++|++.|.
T Consensus       154 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR  191 (192)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhccC
Confidence            99999999999999999999999999999999998763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=232.28  Aligned_cols=192  Identities=13%  Similarity=0.041  Sum_probs=172.8

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIH  210 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~  210 (415)
                      |..|.|||+.|+..|+.+++++|++.  +.+++..+..|.||||+|+..+...+ ..++..|++....  .+..|.||||
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~~t~L~   81 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL--GGDLNSTPLH   81 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--BTTTTBCHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhh--cCCcCCChhH
Confidence            78899999999999999999999998  77899999999999999998888776 4444666554433  2356899999


Q ss_pred             HHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCC-HHHHH
Q 014994          211 KALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNE-PEVMV  285 (415)
Q Consensus       211 ~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~-~~~v~  285 (415)
                      +|+..|+.+++++|++.| ++   +..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..++ .++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  160 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTR  160 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence            999999999999999999 43   57899999999999999999999996 89999999999999999997766 89999


Q ss_pred             HHHhCCCCCCCCCC-CCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          286 TLLSKGARASETTS-DGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       286 ~Ll~~Gadin~~d~-~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      +|++.|++++..+. .|.||||+|+..|+.++++.|++.|++++
T Consensus       161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  204 (240)
T 3eu9_A          161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD  204 (240)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999997 99999999999999999999999998875

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=4.9e-30  Score=217.94  Aligned_cols=155  Identities=15%  Similarity=0.094  Sum_probs=142.6

Q ss_pred             CChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHH
Q 014994          134 DVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAL  213 (415)
Q Consensus       134 ~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  213 (415)
                      .|.||||.|+..|+.+++++|++.  +.+                                   ++..|..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~--~~~-----------------------------------~~~~~~~g~t~L~~A~   44 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ--ENV-----------------------------------INHTDEEGFTPLMWAA   44 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH--SSC-----------------------------------TTCCCTTSCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc--CCC-----------------------------------cCCCCCCCCCHHHHHH
Confidence            478999999999999999999997  322                                   3345568999999999


Q ss_pred             hcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 014994          214 HSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS  289 (415)
Q Consensus       214 ~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~  289 (415)
                      ..|+.+++++|+++| ++   |..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|++
T Consensus        45 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  123 (167)
T 3v31_A           45 AHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE  123 (167)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999 44   57889999999999999999999997 89999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          290 KGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       290 ~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      +|++++.+|..|.||||+|+..|+.+++++|++++..
T Consensus       124 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988754

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1e-29  Score=216.62  Aligned_cols=155  Identities=22%  Similarity=0.207  Sum_probs=140.9

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      ...+.|||+.|+..|+.+++++|++.  +.++                                   +..|..|.||||+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~-----------------------------------~~~~~~g~t~L~~   53 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMAN--GADV-----------------------------------NAEDASGWTPLHL   53 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHT--TCCT-----------------------------------TCCCTTSCCHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHC--CCCC-----------------------------------CCCCCCCCCHHHH
Confidence            45678999999999999999999997  4332                                   3345678999999


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      |+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|
T Consensus        54 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  132 (169)
T 2y1l_E           54 AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVL  132 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999 44   56899999999999999999999996 899999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          288 LSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       288 l~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      +++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus       133 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.5e-30  Score=219.98  Aligned_cols=158  Identities=16%  Similarity=0.095  Sum_probs=142.5

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHh
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALH  214 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  214 (415)
                      +.||||.|+..|+.++++.+++.+.                                    ..++..+..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~------------------------------------~~~~~~~~~g~t~L~~A~~   45 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGD------------------------------------NLVNKPDERGFTPLIWASA   45 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCS------------------------------------GGGGCCCTTSCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCc------------------------------------ccccCCCCCCCCHHHHHHH
Confidence            4689999999999999999998621                                    1233456789999999999


Q ss_pred             cCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 014994          215 SDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK  290 (415)
Q Consensus       215 ~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  290 (415)
                      .|+.+++++|+++| ++   +..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        46 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  124 (172)
T 3v30_A           46 FGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR  124 (172)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999 44   57899999999999999999999986 899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccc
Q 014994          291 GARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNK  329 (415)
Q Consensus       291 Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~  329 (415)
                      |++++.+|..|.||||+|+..|+.+++++|+++|.....
T Consensus       125 ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A          125 GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999876543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=6.2e-30  Score=216.02  Aligned_cols=155  Identities=20%  Similarity=0.154  Sum_probs=138.8

Q ss_pred             CCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHH
Q 014994          133 EDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKA  212 (415)
Q Consensus       133 ~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  212 (415)
                      +...||||.|+..|+.+++++|++.  +.+                                   ++..+..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~~~-----------------------------------~~~~~~~g~t~L~~A   45 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN--NVN-----------------------------------VNAQNGFGRTALQVM   45 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS--CCC-----------------------------------TTCCCTTSCCHHHHC
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC--CCC-----------------------------------ccccCccCccHHHHH
Confidence            4567999999999999999999986  322                                   233456789999999


Q ss_pred             HhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014994          213 LHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLL  288 (415)
Q Consensus       213 ~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll  288 (415)
                      +. |+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.+++++|+
T Consensus        46 ~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  123 (162)
T 1ihb_A           46 KL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLV  123 (162)
T ss_dssp             CS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             Hc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99 9999999999999 44   56899999999999999999999986 8999999999999999999999999999999


Q ss_pred             hCCCC-CCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          289 SKGAR-ASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       289 ~~Gad-in~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      ++|++ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus       124 ~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99998 699999999999999999999999999999974

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=6.1e-30  Score=218.43  Aligned_cols=163  Identities=13%  Similarity=0.037  Sum_probs=142.6

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCC-cccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLG-MVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEI  180 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~  180 (415)
                      ++||.|+..|+.++++.|++.+.+ ++.+  +..|.||||+|+..|+.+++++|++.  +.++                 
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~-----------------   62 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKP--DERGFTPLIWASAFGEIETVRFLLEW--GADP-----------------   62 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCC--CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCT-----------------
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCC--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCc-----------------
Confidence            569999999999999999999988 5664  88999999999999999999999997  4333                 


Q ss_pred             HhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhc
Q 014994          181 KSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNM  256 (415)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~  256 (415)
                                        +..+..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++.
T Consensus        63 ------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  124 (172)
T 3v30_A           63 ------------------HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR  124 (172)
T ss_dssp             ------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ------------------hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                              234457899999999999999999999999 44   56899999999999999999999996


Q ss_pred             CCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcH
Q 014994          257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTA  304 (415)
Q Consensus       257 ~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tp  304 (415)
                       |++++.+|..|+||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus       125 -ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          125 -GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             -CCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence             89999999999999999999999999999999999999999999887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=6.8e-30  Score=216.59  Aligned_cols=156  Identities=18%  Similarity=0.142  Sum_probs=139.4

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +..|.||||.|+..|+.++++.|++...                                    ..++..+..|.||||+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~------------------------------------~~~~~~~~~g~t~L~~   48 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQS------------------------------------VNCRDIEGRQSTPLHF   48 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTT------------------------------------TTCCCTTTTCCCHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCC------------------------------------CCccccccCCCCHHHH
Confidence            6778999999999999999999997521                                    1222345678999999


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      |+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.+++++|
T Consensus        49 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  127 (165)
T 3twr_A           49 AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLL  127 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999 44   57899999999999999999999996 999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCC
Q 014994          288 LSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQ  325 (415)
Q Consensus       288 l~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~  325 (415)
                      +++|++++.+|..|+||||+|+. |+.+++++|.+.|+
T Consensus       128 l~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          128 LQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999999999999999877 89999999999885

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.9e-29  Score=209.27  Aligned_cols=147  Identities=21%  Similarity=0.116  Sum_probs=134.9

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHh
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALH  214 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  214 (415)
                      ..||||.|+..|+.+++++|++.+.  +++                                    .+..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~--~~~------------------------------------~~~~g~t~L~~A~~   43 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGA--PFT------------------------------------TDWLGTSPLHLAAQ   43 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC--CCC------------------------------------CCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCC--CCC------------------------------------cCCCCCCHHHHHHH
Confidence            5699999999999999999999732  211                                    24578999999999


Q ss_pred             cCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 014994          215 SDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK  290 (415)
Q Consensus       215 ~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  290 (415)
                      .|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        44 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  122 (153)
T 1awc_B           44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKY  122 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999 44   56799999999999999999999986 999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCcchHHHH
Q 014994          291 GARASETTSDGQTAVAICRRMTRRKDYIEA  320 (415)
Q Consensus       291 Gadin~~d~~g~tpL~~A~~~~~~~~v~~l  320 (415)
                      |++++.+|..|.||||+|+..|+.+++++|
T Consensus       123 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999999999999999876

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=3.6e-29  Score=224.20  Aligned_cols=157  Identities=19%  Similarity=0.116  Sum_probs=141.9

Q ss_pred             CChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHH
Q 014994          134 DVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAL  213 (415)
Q Consensus       134 ~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  213 (415)
                      .|.||||+|+..|+.+++++|++.. +                                   ..++..|..|.||||+|+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g-----------------------------------~~~~~~~~~g~t~L~~A~   45 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE-G-----------------------------------CEVHQRGAMGETALHIAA   45 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT-C-----------------------------------SCTTCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc-C-----------------------------------CCcccCCCCCCCHHHHHH
Confidence            4889999999999999999999851 1                                   233445678999999999


Q ss_pred             hcCCHHHHHHHHHCC-CC--------CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCC-------------CCChH
Q 014994          214 HSDDVELLKLLLDVS-NV--------TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDA-------------RGRTV  271 (415)
Q Consensus       214 ~~g~~~~v~~Ll~~g-~~--------~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~-------------~g~Tp  271 (415)
                      ..|+.+++++|++.| ++        |..|+||||+|+..|+.+++++|++. |++++..+.             .|+||
T Consensus        46 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~  124 (232)
T 2rfa_A           46 LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHP  124 (232)
T ss_dssp             HTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSH
T ss_pred             HcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCH
Confidence            999999999999998 32        35799999999999999999999996 899999876             79999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchH----HHHHhcCCCc
Q 014994          272 LHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDY----IEASKQGQET  327 (415)
Q Consensus       272 Lh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v----~~l~~~g~~~  327 (415)
                      ||+|+..|+.+++++|+++|+|+|.+|..|+||||+|+..|+.+++    ++|++.|+.+
T Consensus       125 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            9999999999999999999999999999999999999999999988    9999999865

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.1e-29  Score=211.74  Aligned_cols=154  Identities=18%  Similarity=0.123  Sum_probs=138.4

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      ...++||.|+..|+.+++++|++.|++++.+  +..|.||||+|+. |+.+++++|++.  +.++               
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~---------------   63 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMKL-GNPEIARRLLLR--GANP---------------   63 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCCS-SCHHHHHHHHHT--TCCT---------------
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCcccc--CccCccHHHHHHc-CcHHHHHHHHHc--CCCC---------------
Confidence            3568999999999999999999999999986  8999999999999 999999999997  4332               


Q ss_pred             HHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHH
Q 014994          179 EIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVL  254 (415)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll  254 (415)
                                          +..+..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|+
T Consensus        64 --------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  123 (162)
T 1ihb_A           64 --------------------DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV  123 (162)
T ss_dssp             --------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             --------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                234567899999999999999999999999 44   578999999999999999999999


Q ss_pred             hcCCCC-ccccCCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 014994          255 NMDSAG-LNLKDARGRTVLHVAARRNEPEVMVTLLSKGAR  293 (415)
Q Consensus       255 ~~~gad-vn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gad  293 (415)
                      +. |++ ++.+|..|+||||+|+..|+.+++++|+++|||
T Consensus       124 ~~-g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          124 KH-TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HH-SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             Hc-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            97 787 699999999999999999999999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.2e-28  Score=210.03  Aligned_cols=154  Identities=15%  Similarity=0.152  Sum_probs=139.8

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ....++|+.|+..|+.+++++|++.|++++.+  +..|.||||+|+..|+.+++++|++.  +.++              
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~--------------   73 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLLKN--GADV--------------   73 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCT--------------
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCC--------------
Confidence            34678999999999999999999999999986  89999999999999999999999997  4332              


Q ss_pred             HHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHH
Q 014994          178 SEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~L  253 (415)
                                           +..|..|.||||+|+..|+.+++++|+++| ++   |..|.||||+|+..|+.+++++|
T Consensus        74 ---------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  132 (169)
T 2y1l_E           74 ---------------------NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL  132 (169)
T ss_dssp             ---------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ---------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                 234567899999999999999999999999 44   56799999999999999999999


Q ss_pred             HhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 014994          254 LNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG  291 (415)
Q Consensus       254 l~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~G  291 (415)
                      ++. |++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       133 l~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          133 LKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            996 8999999999999999999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.4e-29  Score=217.68  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=143.3

Q ss_pred             CCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHH
Q 014994          133 EDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKA  212 (415)
Q Consensus       133 ~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  212 (415)
                      ..+.+|||.|+..|+.++++++++...                                    ..++..+..|.||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~------------------------------------~~~~~~~~~g~t~L~~A   46 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTE------------------------------------NDLNQGDDHGFSPLHWA   46 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTT------------------------------------SCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCc------------------------------------ccccccCCCCCCHHHHH
Confidence            467899999999999999999998521                                    23345667899999999


Q ss_pred             HhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014994          213 LHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLL  288 (415)
Q Consensus       213 ~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll  288 (415)
                      +..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.+++++|+
T Consensus        47 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  125 (179)
T 3f6q_A           47 CREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLV  125 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999 44   57899999999999999999999996 8999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          289 SKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       289 ~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ++|++++.+|..|.||||+|+..++..+++.|++.|++++
T Consensus       126 ~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~  165 (179)
T 3f6q_A          126 ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN  165 (179)
T ss_dssp             HTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred             HCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            9999999999999999999999999999999999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.5e-28  Score=206.22  Aligned_cols=150  Identities=13%  Similarity=0.063  Sum_probs=136.8

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHh
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALH  214 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  214 (415)
                      +.||||.|+..|+.+++++|++. .+.                                   .++..+..|.||||+ +.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~-----------------------------------~~~~~~~~g~t~L~~-~~   44 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELV-----------------------------------HPDALNRFGKTALQV-MM   44 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCC-----------------------------------CTTCCCTTSCCHHHH-SC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCc-----------------------------------CccccCCCCCcHHHH-HH
Confidence            57999999999999999999986 321                                   233455679999999 99


Q ss_pred             cCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 014994          215 SDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK  290 (415)
Q Consensus       215 ~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  290 (415)
                      .|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        45 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            99999999999999 44   57899999999999999999999986 899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          291 GARASETTSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       291 Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                       ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       124 -~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          124 -SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence             99999999999999999999999999999864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=2.3e-30  Score=244.56  Aligned_cols=179  Identities=15%  Similarity=0.054  Sum_probs=94.5

Q ss_pred             HHHHHcCcHHHHHHHHHhhcCCCCCc-cccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCC
Q 014994          140 VAAFHCQLNMLRSYCIQRIAGSNLDN-FCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDD  217 (415)
Q Consensus       140 ~~A~~~g~~~lv~~ll~~~~~~~~~~-~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  217 (415)
                      |+|+..+..++++.|++.  +.+++. .+..|.||||+|+..++..+ ..+++.|+++   +.+|..|.||||+|+..|+
T Consensus       102 ~~a~~~~~~~~~~~l~~~--g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNT--QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             --CHHHHHHHHHHHCTTS--CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSH
T ss_pred             HHHHHhhHHHHHHHHHhc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHhcc
Confidence            444444444555555444  444554 45555555555555444444 2222444332   2333455555555555554


Q ss_pred             ---HHHHHHHHHCC-----CCCCCCchHHHHHHH----CCCHHHHHHHHhcC-------------------CCCccccCC
Q 014994          218 ---VELLKLLLDVS-----NVTLDDAYALHYAAA----CCSPKVFKEVLNMD-------------------SAGLNLKDA  266 (415)
Q Consensus       218 ---~~~v~~Ll~~g-----~~~~~g~tpL~~A~~----~g~~~~v~~Ll~~~-------------------gadvn~~d~  266 (415)
                         .++++.|++.+     ..|..|+||||+|+.    .|+.++++.|++..                   |+++|.++.
T Consensus       177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~  256 (327)
T 1sw6_A          177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG  256 (327)
T ss_dssp             HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred             cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence               33444444433     123445555555555    45555555554321                   455555555


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccccc
Q 014994          267 RGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDR  331 (415)
Q Consensus       267 ~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~~~  331 (415)
                      .|+||||+|+.      +++|+++  ++|.+|..|+||||+|+..|+.+++++|++.|++++...
T Consensus       257 ~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d  313 (327)
T 1sw6_A          257 ERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN  313 (327)
T ss_dssp             ---CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            55555555543      4555554  688999999999999999999999999999999986443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1.5e-28  Score=214.97  Aligned_cols=161  Identities=18%  Similarity=0.178  Sum_probs=146.1

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      ...+.||||.|+..|+.+.++.++....                                    ..++..|..|.||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~------------------------------------~~~~~~~~~g~t~L~~   45 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTT------------------------------------YQVDEVDTEGNTPLNI   45 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTT------------------------------------CCTTCCCTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCC------------------------------------CCCCCCCCCCCCHHHH
Confidence            4678899999999999999999998521                                    2344456689999999


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      |+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|+...+++++..|..|.||||+|+..|+.+++++|
T Consensus        46 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  125 (201)
T 3hra_A           46 AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL  125 (201)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHH
Confidence            99999999999999999 54   567899999999999999999999777899999999999999999999999999999


Q ss_pred             HhCC-CCCCCCCCCCCcHHHHHHHcCC-----cchHHHHHhcCCCcc
Q 014994          288 LSKG-ARASETTSDGQTAVAICRRMTR-----RKDYIEASKQGQETN  328 (415)
Q Consensus       288 l~~G-adin~~d~~g~tpL~~A~~~~~-----~~~v~~l~~~g~~~~  328 (415)
                      +++| ++++.+|..|+||||+|+..++     .+++++|++.|++++
T Consensus       126 l~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~  172 (201)
T 3hra_A          126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS  172 (201)
T ss_dssp             HHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred             HHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence            9999 9999999999999999999998     899999999999876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=2.7e-29  Score=228.55  Aligned_cols=160  Identities=19%  Similarity=0.101  Sum_probs=137.7

Q ss_pred             CChhHHHHHHHcCcHH----HHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHH
Q 014994          134 DVLPILVAAFHCQLNM----LRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRI  209 (415)
Q Consensus       134 ~g~t~L~~A~~~g~~~----lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  209 (415)
                      .|.||||.|+..|+.+    +++++++.  +.+++...                               ...|..|.|||
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~-------------------------------~~~d~~g~t~L   47 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSA-------------------------------YTEGSTGKTCL   47 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGG-------------------------------GSBTTTTBCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCccccc-------------------------------ccCCCCCCCHH
Confidence            4889999999999986    55666665  33332100                               01456899999


Q ss_pred             HHHHhc---CCHHHHHHHHHCC-CCC--------------CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCC----
Q 014994          210 HKALHS---DDVELLKLLLDVS-NVT--------------LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDAR----  267 (415)
Q Consensus       210 ~~A~~~---g~~~~v~~Ll~~g-~~~--------------~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~----  267 (415)
                      |+|+..   |+.++|++|++.| +++              ..|+||||+|+..|+.+++++|++. |+++|.+|..    
T Consensus        48 ~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~  126 (256)
T 2etb_A           48 MKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQ  126 (256)
T ss_dssp             HHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGS
T ss_pred             HHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccccccccc
Confidence            999999   9999999999998 332              5699999999999999999999996 9999999986    


Q ss_pred             ---------CChHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHH--cCCcc-------hHHHHHhcCCC
Q 014994          268 ---------GRTVLHVAARRNEPEVMVTLLS---KGARASETTSDGQTAVAICRR--MTRRK-------DYIEASKQGQE  326 (415)
Q Consensus       268 ---------g~TpLh~A~~~~~~~~v~~Ll~---~Gadin~~d~~g~tpL~~A~~--~~~~~-------~v~~l~~~g~~  326 (415)
                               |+||||+|+..|+.+++++|++   +|+++|.+|..|+||||+|+.  .++.+       ++++|++.|++
T Consensus       127 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~  206 (256)
T 2etb_A          127 KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR  206 (256)
T ss_dssp             CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC
Confidence                     9999999999999999999999   999999999999999999999  66776       99999999876


Q ss_pred             c
Q 014994          327 T  327 (415)
Q Consensus       327 ~  327 (415)
                      +
T Consensus       207 ~  207 (256)
T 2etb_A          207 L  207 (256)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.4e-28  Score=208.90  Aligned_cols=156  Identities=15%  Similarity=0.049  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      +.||||.|+..|+.+++++|++.|.+++.+  +..|.||||+|+..|+.+++++|++.  +.+++               
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~---------------   63 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQ---------------   63 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTT---------------
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCC---------------
Confidence            346799999999999999999999999986  89999999999999999999999997  43332               


Q ss_pred             HHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHh
Q 014994          180 IKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLN  255 (415)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~  255 (415)
                                          ..+..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++
T Consensus        64 --------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  123 (167)
T 3v31_A           64 --------------------LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE  123 (167)
T ss_dssp             --------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------------------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                                34457899999999999999999999999 44   5689999999999999999999999


Q ss_pred             cCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC
Q 014994          256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARAS  295 (415)
Q Consensus       256 ~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin  295 (415)
                      . |++++.+|..|+||||+|+..|+.+++++|+++++++.
T Consensus       124 ~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          124 S-GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             T-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             c-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            5 99999999999999999999999999999999887654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.6e-28  Score=213.48  Aligned_cols=153  Identities=18%  Similarity=0.144  Sum_probs=139.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      .+.||||+|+..|+.+++++|++.|++++.+  +..|.||||+|+..|+.+++++|++.  +.++               
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~---------------   94 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSK--GSNV---------------   94 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCT---------------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHC--CCCC---------------
Confidence            3668999999999999999999999999986  88999999999999999999999997  4332               


Q ss_pred             HHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHH
Q 014994          179 EIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVL  254 (415)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll  254 (415)
                                          +..|..|.||||+|+..|+.+++++|+++| ++   |..|.||||+|+..|+.+++++|+
T Consensus        95 --------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  154 (192)
T 2rfm_A           95 --------------------NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL  154 (192)
T ss_dssp             --------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             --------------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                234567899999999999999999999999 44   578999999999999999999999


Q ss_pred             hcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 014994          255 NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG  291 (415)
Q Consensus       255 ~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~G  291 (415)
                      +. |++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       155 ~~-ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          155 EL-GADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HC-CCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            86 9999999999999999999999999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=2.5e-28  Score=209.94  Aligned_cols=162  Identities=13%  Similarity=0.084  Sum_probs=144.7

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHh-CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHW-LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      ..++||.|+..|+.+++++|++. +.+++..  +..|.||||+|+..|+.+++++|++.  +.++               
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~---------------   65 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQG--DDHGFSPLHWACREGRSAVVEMLIMR--GARI---------------   65 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCT---------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCccccccc--CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCC---------------
Confidence            45679999999999999999988 6677775  89999999999999999999999997  4333               


Q ss_pred             HHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHH
Q 014994          179 EIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVL  254 (415)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll  254 (415)
                                          +..|..|.||||+|+..|+.+++++|+++| ++   |..|.||||+|+..|+.+++++|+
T Consensus        66 --------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  125 (179)
T 3f6q_A           66 --------------------NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV  125 (179)
T ss_dssp             --------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             --------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                                234567899999999999999999999999 44   578999999999999999999999


Q ss_pred             hcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 014994          255 NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDG  301 (415)
Q Consensus       255 ~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g  301 (415)
                      +. |++++.+|..|.||||+|+..++.+++++|+++|++++..+..+
T Consensus       126 ~~-ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          126 AN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             HT-TCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             HC-CCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            86 99999999999999999999999999999999999999877654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.2e-27  Score=200.14  Aligned_cols=147  Identities=14%  Similarity=0.100  Sum_probs=133.8

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      ..++|+.|+..|+.+++++|++.|++++.   +..|.||||+|+..|+.+++++|++.  +.++                
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~----------------   60 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRA--GVSR----------------   60 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTT--TCCT----------------
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCC----------------
Confidence            35789999999999999999999999875   88999999999999999999999986  3222                


Q ss_pred             HHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHh
Q 014994          180 IKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLN  255 (415)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~  255 (415)
                                         +..+..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++
T Consensus        61 -------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  121 (153)
T 1awc_B           61 -------------------DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK  121 (153)
T ss_dssp             -------------------TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             -------------------CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                               234567899999999999999999999999 44   5779999999999999999999999


Q ss_pred             cCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       256 ~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      . |++++.+|..|+||||+|+..|+.+++++|
T Consensus       122 ~-ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          122 Y-GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             T-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             c-CCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            6 999999999999999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.1e-30  Score=233.92  Aligned_cols=181  Identities=12%  Similarity=-0.007  Sum_probs=155.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ....++||+|+..|+.+++++|++.|++++.+  |..|.||||+|+..|+.+++++|++.  +.+               
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~---------------   79 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITA--GAN---------------   79 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCC---------------
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHC--CCC---------------
Confidence            34678899999999999999999999998886  88899999999999999999999886  433               


Q ss_pred             HHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC----CCCchHHHHH--HHCCCHHHH
Q 014994          178 SEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT----LDDAYALHYA--AACCSPKVF  250 (415)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~----~~g~tpL~~A--~~~g~~~~v  250 (415)
                                          ++..|..|.||||+|+..|+.+++++|++.| +++    ..|+||||+|  +..|+.+++
T Consensus        80 --------------------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v  139 (229)
T 2vge_A           80 --------------------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCA  139 (229)
T ss_dssp             --------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHH
T ss_pred             --------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHH
Confidence                                3345567999999999999999999999999 542    5899999999  999999999


Q ss_pred             HHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHcCCcchHHHHH
Q 014994          251 KEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGAR--ASETTSDGQTAVAICRRMTRRKDYIEAS  321 (415)
Q Consensus       251 ~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gad--in~~d~~g~tpL~~A~~~~~~~~v~~l~  321 (415)
                      ++|++. |++++.+|..|.||||.++..+   .+++|++.|++  ++.+|.+|+||||+|+..|+.++|+...
T Consensus       140 ~~Ll~~-ga~~~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          140 TYLADV-EQSMGLMNSGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             HHHHHH-HHHTTTSGGGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHHHc-CCCcccccCCchHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            999997 8999999999999999665544   33688999999  7889999999999999999998887544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.8e-29  Score=226.29  Aligned_cols=182  Identities=13%  Similarity=0.022  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      +.|+||.|+..|..+.++.|+++|++++.   +..|.||||.|+..|+.+++++|++.  +.+                 
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~-----------------   62 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYE--VDD-----------------   62 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSS-----------------
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHc--CCC-----------------
Confidence            57889999999999999999999999987   67889999999999999999999876  322                 


Q ss_pred             HHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHh
Q 014994          180 IKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLN  255 (415)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~  255 (415)
                                        ++..|..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++
T Consensus        63 ------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  124 (239)
T 1ycs_B           63 ------------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE  124 (239)
T ss_dssp             ------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                              3344567889999999999999999999998 44   5678999999999999999999998


Q ss_pred             cCCCCccccCCCCC-hHHHHH--HHcCCHHHHHHHHhCCCCCCCC---------CCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          256 MDSAGLNLKDARGR-TVLHVA--ARRNEPEVMVTLLSKGARASET---------TSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       256 ~~gadvn~~d~~g~-TpLh~A--~~~~~~~~v~~Ll~~Gadin~~---------d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                      . |++++.++..|. ||||+|  +..|+.+++++|+++|++++..         +..+.+|+++|...|.  ++..+.+.
T Consensus       125 ~-ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~  201 (239)
T 1ycs_B          125 S-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRE  201 (239)
T ss_dssp             T-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCC
T ss_pred             c-CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEec
Confidence            6 899999988776 999998  7888999999999999988876         5567888887766554  34444433


Q ss_pred             C
Q 014994          324 G  324 (415)
Q Consensus       324 g  324 (415)
                      +
T Consensus       202 ~  202 (239)
T 1ycs_B          202 D  202 (239)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=6.4e-28  Score=197.77  Aligned_cols=128  Identities=18%  Similarity=0.122  Sum_probs=121.1

Q ss_pred             CCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCC-CChH
Q 014994          197 EVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDAR-GRTV  271 (415)
Q Consensus       197 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~-g~Tp  271 (415)
                      .++..+..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+. |+.+++++|++. |++++.+|.. |+||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRP   81 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCH
Confidence            45667789999999999999999999999999 44   5789999999999 999999999997 8999999999 9999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          272 LHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       272 Lh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      ||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999874

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.4e-27  Score=200.83  Aligned_cols=154  Identities=19%  Similarity=0.108  Sum_probs=134.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHh-CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHW-LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEV  176 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~  176 (415)
                      ..+.++||.|+..|+.++++.|++. +.+++..  +..|.||||+|+..|+.+++++|++.  +.+              
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~--------------   67 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI--EGRQSTPLHFAAGYNRVSVVEYLLQH--GAD--------------   67 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT--TTTCCCHHHHHHHTTCHHHHHHHHHT--TCC--------------
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc--ccCCCCHHHHHHHcChHHHHHHHHhc--CCC--------------
Confidence            3468999999999999999999884 4555554  78899999999999999999999997  433              


Q ss_pred             HHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHH
Q 014994          177 SSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKE  252 (415)
Q Consensus       177 a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~  252 (415)
                                           ++..|..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++
T Consensus        68 ---------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  126 (165)
T 3twr_A           68 ---------------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL  126 (165)
T ss_dssp             ---------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ---------------------CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence                                 2334567999999999999999999999999 44   5789999999999999999999


Q ss_pred             HHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 014994          253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA  292 (415)
Q Consensus       253 Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Ga  292 (415)
                      |++. |++++.+|..|+||||+|+. |+.+++++|+++||
T Consensus       127 Ll~~-ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          127 LLQH-GADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHT-TCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHc-CCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9986 99999999999999999877 89999999999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=4.7e-28  Score=218.29  Aligned_cols=158  Identities=18%  Similarity=0.130  Sum_probs=116.4

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +..|.||||.|+..|+.++++.|++.  +.+++                                    .+..|.||||+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~------------------------------------~~~~~~t~L~~   43 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH--GMRVK------------------------------------FNPLPLALLLD   43 (239)
T ss_dssp             -------------------------------------------------------------------------CHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc--CCCcc------------------------------------cCchhhHHHHH
Confidence            34688999999999999999999987  32222                                    11368999999


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      |+..|+.++|++|++.| ++   |..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.+++++|
T Consensus        44 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L  122 (239)
T 1ycs_B           44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFL  122 (239)
T ss_dssp             HHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999 44   57899999999999999999999997 899999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCC-cHHHHH--HHcCCcchHHHHHhcCCCcc
Q 014994          288 LSKGARASETTSDGQ-TAVAIC--RRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       288 l~~Gadin~~d~~g~-tpL~~A--~~~~~~~~v~~l~~~g~~~~  328 (415)
                      +++|++++.++..|. ||||+|  +..|+.+++++|++.|+++.
T Consensus       123 l~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B          123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             HHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred             HHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc
Confidence            999999999998887 999999  78899999999999987764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.6e-26  Score=193.79  Aligned_cols=149  Identities=19%  Similarity=0.152  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHh-CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHW-LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSS  178 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~  178 (415)
                      +.++||.|+..|+.+++++|++. +.+++..  +..|.||||+ +..|+.+++++|++.  +.++               
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~---------------   61 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL--NRFGKTALQV-MMFGSTAIALELLKQ--GASP---------------   61 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC--CTTSCCHHHH-SCTTCHHHHHHHHHT--TCCT---------------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc--CCCCCcHHHH-HHcCCHHHHHHHHHC--CCCC---------------
Confidence            46899999999999999999998 3477775  8899999999 999999999999997  4333               


Q ss_pred             HHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHH
Q 014994          179 EIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVL  254 (415)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll  254 (415)
                                          +..|..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|+
T Consensus        62 --------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  121 (156)
T 1bd8_A           62 --------------------NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             --------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             --------------------CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHH
Confidence                                234567899999999999999999999999 44   578999999999999999999999


Q ss_pred             hcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 014994          255 NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK  290 (415)
Q Consensus       255 ~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  290 (415)
                      +.  ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       122 ~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          122 AE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             hc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            85  99999999999999999999999999999975

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=2.6e-27  Score=215.87  Aligned_cols=162  Identities=18%  Similarity=0.108  Sum_probs=137.5

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHH----hhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQ----RIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVR  207 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~----~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  207 (415)
                      +..+.||||.|+..|+.+.++.+++    .  +.+++..+.                               ..+..|.|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~-------------------------------~~~~~g~t   48 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEF-------------------------------REPSTGKT   48 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGG-------------------------------SCTTTCCC
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhh-------------------------------hccCCCCc
Confidence            5678999999999999885544444    5  333332220                               13457999


Q ss_pred             HHHHHH---hcCCHHHHHHHHHCC-CC--------------CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccC----
Q 014994          208 RIHKAL---HSDDVELLKLLLDVS-NV--------------TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD----  265 (415)
Q Consensus       208 ~L~~A~---~~g~~~~v~~Ll~~g-~~--------------~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d----  265 (415)
                      |||+|+   ..|+.+++++|++.| +.              |..|+||||+|+..|+.++|++|++. |+++|..+    
T Consensus        49 ~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~  127 (260)
T 3jxi_A           49 CLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRF  127 (260)
T ss_dssp             HHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECC
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccc
Confidence            999999   779999999999987 21              23799999999999999999999996 99999998    


Q ss_pred             ----------CCCChHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCcHHHHHHHcCC---------cchHHHHHhc
Q 014994          266 ----------ARGRTVLHVAARRNEPEVMVTLLS---KGARASETTSDGQTAVAICRRMTR---------RKDYIEASKQ  323 (415)
Q Consensus       266 ----------~~g~TpLh~A~~~~~~~~v~~Ll~---~Gadin~~d~~g~tpL~~A~~~~~---------~~~v~~l~~~  323 (415)
                                ..|+||||+|+..|+.++|++|++   +|+++|.+|..|+||||+|+..++         .+++++|++.
T Consensus       128 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~  207 (260)
T 3jxi_A          128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK  207 (260)
T ss_dssp             CSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence                      689999999999999999999999   999999999999999999999888         5899999999


Q ss_pred             CCCc
Q 014994          324 GQET  327 (415)
Q Consensus       324 g~~~  327 (415)
                      |+++
T Consensus       208 ga~~  211 (260)
T 3jxi_A          208 CAKL  211 (260)
T ss_dssp             HHHH
T ss_pred             Cccc
Confidence            8765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=7.1e-27  Score=215.20  Aligned_cols=155  Identities=17%  Similarity=0.054  Sum_probs=138.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCC-CcccccccCCChhHHHHHH-----HcCcHHHHHHHHHhhcCCCCCccccCCC
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLL-GMVGKALVEDVLPILVAAF-----HCQLNMLRSYCIQRIAGSNLDNFCLERE  171 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~~g~t~L~~A~-----~~g~~~lv~~ll~~~~~~~~~~~~~~g~  171 (415)
                      ..+.||||+|+..|+.+++++|++.|+ +++..  +..|.||||+|+     ..++.+++++|++.  +.+         
T Consensus       109 ~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~--g~~---------  175 (276)
T 4hbd_A          109 SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ--NRAGYSPIMLTALATLKTQDDIETVLQLFRL--GNI---------  175 (276)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC--CTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH--SCT---------
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC--CCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc--CCC---------
Confidence            346799999999999999999999998 88886  899999999999     56779999999987  311         


Q ss_pred             ChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCH
Q 014994          172 LPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSP  247 (415)
Q Consensus       172 tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~  247 (415)
                                                .+..+..|.||||+|+..|+.++|++|++.| ++   |..|+||||+|+..|+.
T Consensus       176 --------------------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~  229 (276)
T 4hbd_A          176 --------------------------NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK  229 (276)
T ss_dssp             --------------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             --------------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence                                      2234457999999999999999999999999 54   57899999999999999


Q ss_pred             HHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 014994          248 KVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG  291 (415)
Q Consensus       248 ~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~G  291 (415)
                      +++++||+..|+|+|.+|..|+||||+|+..|+.+++++|++++
T Consensus       230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99999999559999999999999999999999999999999873

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.9e-26  Score=188.90  Aligned_cols=123  Identities=22%  Similarity=0.187  Sum_probs=115.2

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHH
Q 014994          201 MHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAA  276 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~  276 (415)
                      ....+.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHH
Confidence            3457899999999999999999999999 54   56799999999999999999999986 8999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          277 RRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       277 ~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      ..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|++.|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=4.3e-27  Score=203.38  Aligned_cols=151  Identities=11%  Similarity=0.015  Sum_probs=129.8

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCC-ccccHHHHHHH
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMH-AKIVRRIHKAL  213 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~  213 (415)
                      +.++|+.|+..|+.+.+..++..  +  +                                   +..+ ..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~--~--~-----------------------------------~~~~~~~g~T~Lh~A~   46 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK--G--Y-----------------------------------EDKESVLKSNILYDVL   46 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH--S--S-----------------------------------SCHHHHHTTTHHHHHT
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc--C--c-----------------------------------ccccccCCCCHHHHHH
Confidence            45789999999998888888775  2  1                                   1112 46899999999


Q ss_pred             hcCCH----HHHHHHHHCC-CC---CCCCchHHHHHHHCCC------HHHHHHHHhcCCCCccccCCCCC-hHHHHHHHc
Q 014994          214 HSDDV----ELLKLLLDVS-NV---TLDDAYALHYAAACCS------PKVFKEVLNMDSAGLNLKDARGR-TVLHVAARR  278 (415)
Q Consensus       214 ~~g~~----~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~------~~~v~~Ll~~~gadvn~~d~~g~-TpLh~A~~~  278 (415)
                      ..|+.    +++++||++| ++   |..|+||||+|+..|+      .+++++||+. |+|+|.+|..|+ ||||+|+..
T Consensus        47 ~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~  125 (186)
T 3t8k_A           47 RNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNY  125 (186)
T ss_dssp             TCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGC
T ss_pred             HcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHc
Confidence            99975    5999999999 55   5689999999999987      5789999986 999999999999 999999995


Q ss_pred             C-----CHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCC
Q 014994          279 N-----EPEVMVTLLS-KGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQ  325 (415)
Q Consensus       279 ~-----~~~~v~~Ll~-~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~  325 (415)
                      +     +.+++++|++ +|+|++.+|..|.||||+|+..|+..++++|.....
T Consensus       126 ~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             CSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            4     4569999999 999999999999999999999999999999987643

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.2e-26  Score=194.85  Aligned_cols=136  Identities=17%  Similarity=0.091  Sum_probs=72.5

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +..|.||||+|+..|+.+++++|++.  +.+++                                   ..+..|.||||+
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~-----------------------------------~~~~~g~t~L~~   51 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEA--GANPN-----------------------------------APNSYGRRPIQV   51 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTT-----------------------------------CCCSSSCCTTTS
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHc--CCCCC-----------------------------------CCCCCCCCHHHH
Confidence            45566666666666666666666654  32222                                   223345555655


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---CCCCch-HHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---TLDDAY-ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVT  286 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~~~g~t-pL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~  286 (415)
                      |+ .|+.+++++|+++| ++   |..|+| |||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++
T Consensus        52 A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~  129 (156)
T 1bi7_B           52 MM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARY  129 (156)
T ss_dssp             SC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHH
Confidence            53 56666666666666 33   345565 66666666666666666664 56666666666666666666666666666


Q ss_pred             HHhCCCCCCCCCCCCCcHHH
Q 014994          287 LLSKGARASETTSDGQTAVA  306 (415)
Q Consensus       287 Ll~~Gadin~~d~~g~tpL~  306 (415)
                      |+++|++++.+|..|.||.+
T Consensus       130 Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B          130 LRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HSSCC---------------
T ss_pred             HHHcCCCCCccCcCcCcccc
Confidence            66666666666666666655

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=8.5e-26  Score=181.81  Aligned_cols=122  Identities=30%  Similarity=0.353  Sum_probs=116.5

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcC
Q 014994          204 KIVRRIHKALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRN  279 (415)
Q Consensus       204 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~  279 (415)
                      +|.||||+|+..|+.+++++|+++| +   .+..|.||||+|+..|+.+++++|+.. |++++.+|..|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcC
Confidence            4899999999999999999999998 4   357899999999999999999999996 8999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          280 EPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       280 ~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.|++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999974

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.7e-26  Score=193.82  Aligned_cols=128  Identities=20%  Similarity=0.143  Sum_probs=115.2

Q ss_pred             CCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCCh-HHHH
Q 014994          200 PMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRT-VLHV  274 (415)
Q Consensus       200 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~T-pLh~  274 (415)
                      ..+..|.||||+|+..|+.++|++|+++| ++   |..|+||||+|+ .|+.+++++|++. |+++|.+|..|+| |||+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHH
Confidence            35568999999999999999999999999 44   568999999985 8999999999986 8999999999999 9999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccc
Q 014994          275 AARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNK  329 (415)
Q Consensus       275 A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~  329 (415)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++..
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999999999999999999999999999998753

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=4.7e-26  Score=186.59  Aligned_cols=130  Identities=15%  Similarity=0.054  Sum_probs=116.5

Q ss_pred             CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCC
Q 014994          123 LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMH  202 (415)
Q Consensus       123 g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~  202 (415)
                      +++++.+  +..|.||||+|+..|+.+++++|++.  +.++                                   +..|
T Consensus         2 ~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~-----------------------------------~~~~   42 (136)
T 1d9s_A            2 SPGIHML--GGSSDAGLATAAARGQVETVRQLLEA--GADP-----------------------------------NALN   42 (136)
T ss_dssp             CCCCSCC--CCCCSCHHHHHHHTTCHHHHHHHHHT--TCCT-----------------------------------TCCC
T ss_pred             CCCccCC--CCCCccHHHHHHHcCCHHHHHHHHHc--CCCc-----------------------------------CCcC
Confidence            4677775  88999999999999999999999997  4332                                   3345


Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCC-CchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHH
Q 014994          203 AKIVRRIHKALHSDDVELLKLLLDVS-NV---TLD-DAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAAR  277 (415)
Q Consensus       203 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~-g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~  277 (415)
                      ..|.||||+|+. |+.+++++|+++| ++   |.. |+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.
T Consensus        43 ~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~  120 (136)
T 1d9s_A           43 RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEE  120 (136)
T ss_dssp             TTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHH
T ss_pred             CCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHH
Confidence            678999999999 9999999999999 54   456 89999999999999999999986 89999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCC
Q 014994          278 RNEPEVMVTLLSKGAR  293 (415)
Q Consensus       278 ~~~~~~v~~Ll~~Gad  293 (415)
                      .++.+++++|+++|||
T Consensus       121 ~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          121 QGHRDIARYLHAATGD  136 (136)
T ss_dssp             HTCHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.2e-27  Score=228.87  Aligned_cols=209  Identities=12%  Similarity=-0.032  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCccc-ccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCC---CCccccCCCChHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVG-KALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSN---LDNFCLERELPDE  175 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~---~~~~~~~g~tpl~  175 (415)
                      ..||||+|+..|+.++|++|++.|+.... ...+..|.||||+|+.+|+.++|++|++.  +++   .+..+.+ .||||
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~--gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHH-HHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC-CCHHH
Confidence            46999999999999999999999873211 01145688999999999999999999998  433   1222333 89999


Q ss_pred             HHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHH-hcCCHHHHHHHHHCCCCCCCCchHHHHHHHCCCHHHHHHH
Q 014994          176 VSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKAL-HSDDVELLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       176 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~~~~g~tpL~~A~~~g~~~~v~~L  253 (415)
                      +|+..++..+ +.++..|+++.. +..|..|.||||+|+ ..|+.++|++|+++|.   .|.||||+|+..|+.+++++|
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~-~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga---~~~taL~~Aa~~g~~evv~lL  244 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEAT-AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV---MLAYAEIHEFEYGEKYVNPFI  244 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHH-HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH---HHHHHHHCTTTTTTTTHHHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCccch-hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC---ccchHHHHHHHCCCHHHHHHH
Confidence            9999888887 444466766443 013457899999999 9999999999999772   378999999999999999999


Q ss_pred             HhcCCCCccccCCCCChHHHHHHHcC---------------------------CHHHHHHHHhC---------CCCCCCC
Q 014994          254 LNMDSAGLNLKDARGRTVLHVAARRN---------------------------EPEVMVTLLSK---------GARASET  297 (415)
Q Consensus       254 l~~~gadvn~~d~~g~TpLh~A~~~~---------------------------~~~~v~~Ll~~---------Gadin~~  297 (415)
                      ++. |++++..+.    ++++|+.+|                           ..+.+++|++.         |+++|  
T Consensus       245 ~~~-ga~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n--  317 (376)
T 2aja_A          245 ARH-VNRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG--  317 (376)
T ss_dssp             HHH-HHHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTT--
T ss_pred             Hhc-CcccccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCC--
Confidence            886 788776542    333333333                           34455666652         44443  


Q ss_pred             CCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          298 TSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       298 d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                        .+.||||+|+..|+.+++++|++.|
T Consensus       318 --~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          318 --DANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             --CCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             --CccHHHHHHHHcCcHHHHHHHHcCh
Confidence              4668999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=4.4e-26  Score=203.93  Aligned_cols=140  Identities=21%  Similarity=0.209  Sum_probs=123.3

Q ss_pred             ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccc
Q 014994          188 NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNL  263 (415)
Q Consensus       188 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~  263 (415)
                      ++..|+++...+..+..+.||||+|+..|+.++|++|++.| ++   |..|+||||+|+..|+.+++++|++. |+++|.
T Consensus         4 ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~   82 (229)
T 2vge_A            4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-GANVNS   82 (229)
T ss_dssp             ------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTC
T ss_pred             hhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCC
Confidence            34567777777777888999999999999999999999998 54   57899999999999999999999986 899999


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHH--HHcCCcchHHHHHhcCCCcc
Q 014994          264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETT-SDGQTAVAIC--RRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       264 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d-~~g~tpL~~A--~~~~~~~~v~~l~~~g~~~~  328 (415)
                      +|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|  +..|+.+++++|++.|++++
T Consensus        83 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~  150 (229)
T 2vge_A           83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG  150 (229)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc
Confidence            99999999999999999999999999999999987 6999999999  99999999999999988765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=2.5e-26  Score=188.38  Aligned_cols=125  Identities=20%  Similarity=0.162  Sum_probs=112.2

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHH
Q 014994          201 MHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAA  276 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~  276 (415)
                      +|..|.||||+|+..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHHH
Confidence            5678999999999999999999999999 44   57899999999999999999999986 8999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          277 RRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       277 ~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..+..+++.++.+.+.+
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            99999999999999999999999999999999988888887777665543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=4.5e-26  Score=196.95  Aligned_cols=163  Identities=13%  Similarity=0.068  Sum_probs=128.0

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcH----HHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLN----MLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~----~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ++|+.|+..|+.+.++.++..+.+...   +..|.||||+|+.+|+.    +++++|++.  +++++.++..|+||||+|
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~---~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCHH---HHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccc---ccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHHHHH
Confidence            469999999999999999988765432   47899999999999984    599999998  666666665555555554


Q ss_pred             HHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCc-hHHHHHHHCCC-----H
Q 014994          178 SEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDA-YALHYAAACCS-----P  247 (415)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~-tpL~~A~~~g~-----~  247 (415)
                      +..+...+                             .+..+++++|+++| ++   |..|+ ||||+|+..+.     .
T Consensus        83 ~~~~~~~~-----------------------------~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~  133 (186)
T 3t8k_A           83 FQGGGNDI-----------------------------TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI  133 (186)
T ss_dssp             HHHCTTCH-----------------------------HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHH
T ss_pred             HHcCCcch-----------------------------hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHH
Confidence            33221100                             01258999999999 65   45788 99999999553     5


Q ss_pred             HHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 014994          248 KVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETT  298 (415)
Q Consensus       248 ~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d  298 (415)
                      +++++||..+|+|+|.+|..|+||||+|+..|+.++|++|+++..+.+.++
T Consensus       134 ~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            688999984599999999999999999999999999999998876666554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=5.1e-25  Score=177.08  Aligned_cols=108  Identities=26%  Similarity=0.270  Sum_probs=100.1

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHH
Q 014994          202 HAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAAR  277 (415)
Q Consensus       202 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~  277 (415)
                      +..|.||||+|+..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHH
Confidence            357899999999999999999999999 44   56899999999999999999999986 89999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHH
Q 014994          278 RNEPEVMVTLLSKGARASETTSDGQTAVAICRR  310 (415)
Q Consensus       278 ~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~  310 (415)
                      .|+.+++++|+++|++++.+|..|+||||+|..
T Consensus        83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            999999999999999999999999999999943

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=7.6e-24  Score=170.27  Aligned_cols=122  Identities=30%  Similarity=0.335  Sum_probs=110.6

Q ss_pred             CChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHH
Q 014994          134 DVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAL  213 (415)
Q Consensus       134 ~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  213 (415)
                      +|.||||+|+..|+.+++++|++.  +.++                                   +..+..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~-----------------------------------~~~~~~g~t~L~~A~   43 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADV-----------------------------------NAKDKNGRTPLHLAA   43 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH--TCCT-----------------------------------TCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc--CCCC-----------------------------------CCcCCCCCcHHHHHH
Confidence            588999999999999999999997  4232                                   234457899999999


Q ss_pred             hcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 014994          214 HSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS  289 (415)
Q Consensus       214 ~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~  289 (415)
                      ..|+.+++++|+++| ++   |..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++
T Consensus        44 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  122 (126)
T 1n0r_A           44 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE  122 (126)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999 44   57899999999999999999999986 89999999999999999999999999999999


Q ss_pred             CCCC
Q 014994          290 KGAR  293 (415)
Q Consensus       290 ~Gad  293 (415)
                      +|||
T Consensus       123 ~Gad  126 (126)
T 1n0r_A          123 AGAY  126 (126)
T ss_dssp             HTCC
T ss_pred             cCCC
Confidence            9996

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.4e-23  Score=193.23  Aligned_cols=191  Identities=15%  Similarity=0.051  Sum_probs=144.0

Q ss_pred             ccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHH
Q 014994          131 LVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIH  210 (415)
Q Consensus       131 ~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  210 (415)
                      .|..+.++|+++...|+....+++...... ....+...+....+....+   ..+.....  -....+.......++|+
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~-~~~~kP~~~s~~~~~~~fI---~aKYl~~~--f~~~~~~~~~~~l~~l~  135 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPS-EDPVKPNPGSDMIARKDYI---TAKYMERR--YARKKHADTAAKLHSLC  135 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCS-SSCCSCCTTCCHHHHHHHH---HHHHTTCT--TSCCCSSSHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCCh-hhcCCCCCCCCHHHHHHHH---HHHHHHhh--cccccccccchhhhhhh
Confidence            378899999999999997766655432111 0000111111222211111   11111100  00111222234578999


Q ss_pred             HHHhcCCHHHHHHHHHCC-CC---------CCCCchHHHHHHHC---CCHHHHHHHHhcCCCCccccCCCCChHHHHHHH
Q 014994          211 KALHSDDVELLKLLLDVS-NV---------TLDDAYALHYAAAC---CSPKVFKEVLNMDSAGLNLKDARGRTVLHVAAR  277 (415)
Q Consensus       211 ~A~~~g~~~~v~~Ll~~g-~~---------~~~g~tpL~~A~~~---g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~  277 (415)
                      .|+..|+.+.+..+++.| ++         +..|+||||+|+..   |+.+++++|++. |+++|.+|..|+||||+|+.
T Consensus       136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHH
T ss_pred             hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHH
Confidence            999999999999999999 43         46799999999999   899999999997 99999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          278 RNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       278 ~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      .|+.++|++||++|||++.+|.+|.||||+|+..|+.+++++|++.|+...
T Consensus       215 ~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999988643

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=2.3e-26  Score=219.99  Aligned_cols=176  Identities=12%  Similarity=-0.015  Sum_probs=141.5

Q ss_pred             HHHHHHHHH-cCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          101 IELMYASAA-LQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       101 ~~~L~~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      .+.+++|.. ++.+++++++++.|.+         +.||||+|+..|+.++|++|++.++.                   
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~~---------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~-------------------  117 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGIK---------SEVICFVAAITGCSSALDTLCLLLTS-------------------  117 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTCC---------HHHHHHHHHHHCCHHHHHHHTTC--C-------------------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCC---------cCCHHHHHHHcCCHHHHHHHHHcCCc-------------------
Confidence            345666665 5788888888877543         45899999999999999999886321                   


Q ss_pred             HHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C-----CCCCCchHHHHHHHCCCHHHHHHH
Q 014994          180 IKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N-----VTLDDAYALHYAAACCSPKVFKEV  253 (415)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~-----~~~~g~tpL~~A~~~g~~~~v~~L  253 (415)
                                     ....+..+..|.||||+|+..|+.++|++|+++| +     ++..++||||+||..|+.++|++|
T Consensus       118 ---------------~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~L  182 (376)
T 2aja_A          118 ---------------DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL  182 (376)
T ss_dssp             ---------------CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ---------------HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence                           0111223457889999999999999999999998 4     233348999999999999999999


Q ss_pred             HhcCCCCccc--cCCCCChHHHHHH-HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          254 LNMDSAGLNL--KDARGRTVLHVAA-RRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       254 l~~~gadvn~--~d~~g~TpLh~A~-~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      ++. |++++.  .|..|+||||+|+ ..|+.++|++|+++|++       |.||||+|+..|+.+++++|++.|++.
T Consensus       183 l~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          183 CEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             HHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             HHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence            986 899887  8888999999999 99999999999998853       789999999999999999999888654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=9.7e-25  Score=194.13  Aligned_cols=128  Identities=20%  Similarity=0.230  Sum_probs=112.2

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHH
Q 014994          201 MHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAA  276 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~  276 (415)
                      .+..|.||||+|+..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|+...|+++|.+|..|+||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            4457899999999999999999999999 44   5789999999999999999999998668999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          277 RRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       277 ~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ..|+.++|++|+++|++++.+|..|+||||+|+..|+.++++.+...|+...
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            9999999999999999999999999999999999999999999999988753

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.2e-23  Score=172.15  Aligned_cols=122  Identities=17%  Similarity=0.174  Sum_probs=109.3

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      ...+.||||+|+..|+.+++++|++.  +.+                                   ++..|..|.||||+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~-----------------------------------~~~~~~~g~t~L~~   53 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN--GAD-----------------------------------VNAKDEYGLTPLYL   53 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT--TCC-----------------------------------TTCCCTTSCCHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc--CCC-----------------------------------CCCcCCCCCCHHHH
Confidence            56689999999999999999999997  423                                   23345679999999


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      |+..|+.+++++|+++| ++   |..|.||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|
T Consensus        54 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~L  132 (136)
T 2jab_A           54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEIL  132 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999999 54   57899999999999999999999996 999999999999999999999999999999


Q ss_pred             HhCC
Q 014994          288 LSKG  291 (415)
Q Consensus       288 l~~G  291 (415)
                      +++|
T Consensus       133 l~~G  136 (136)
T 2jab_A          133 QKLN  136 (136)
T ss_dssp             HHC-
T ss_pred             HHcC
Confidence            9987

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.90  E-value=3.7e-24  Score=184.58  Aligned_cols=121  Identities=26%  Similarity=0.300  Sum_probs=108.7

Q ss_pred             CccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccC-CCCChHHHHHH
Q 014994          202 HAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD-ARGRTVLHVAA  276 (415)
Q Consensus       202 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d-~~g~TpLh~A~  276 (415)
                      +..|.||||+|+..|+.+++++|++ | ++   |..|+||||+|+..|+.+++++|++. |+++|.++ ..|+||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHH
Confidence            4579999999999999999999999 7 44   57899999999999999999999986 99999998 89999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          277 RRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       277 ~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..++......++..+
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a  166 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG  166 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHH
Confidence            999999999999999999999999999999999977655444444443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=5.2e-23  Score=156.68  Aligned_cols=93  Identities=31%  Similarity=0.359  Sum_probs=84.0

Q ss_pred             CCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Q 014994          233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       233 ~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~  312 (415)
                      +|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            478999999999999999999986 8999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHhcCCC
Q 014994          313 RRKDYIEASKQGQE  326 (415)
Q Consensus       313 ~~~~v~~l~~~g~~  326 (415)
                      +.+++++|++.|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999998863

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.9e-23  Score=188.72  Aligned_cols=107  Identities=28%  Similarity=0.348  Sum_probs=99.5

Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccC-CCCChHHHHHHH
Q 014994          203 AKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKD-ARGRTVLHVAAR  277 (415)
Q Consensus       203 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d-~~g~TpLh~A~~  277 (415)
                      ..|.||||+|+..|+.+++++|++ | ++   |..|+||||+|+..|+.++|++|+.. |+++|.++ ..|+||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHH
Confidence            478999999999999999999999 7 44   57899999999999999999999986 89999998 789999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc
Q 014994          278 RNEPEVMVTLLSKGARASETTSDGQTAVAICRRM  311 (415)
Q Consensus       278 ~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~  311 (415)
                      .|+.++|++|+++|++++.+|..|+||||+|+..
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREI  154 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH
Confidence            9999999999999999999999999999999854

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.2e-23  Score=172.24  Aligned_cols=130  Identities=16%  Similarity=0.090  Sum_probs=108.2

Q ss_pred             CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCC
Q 014994          123 LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMH  202 (415)
Q Consensus       123 g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~  202 (415)
                      |+|+..   |..|.||||+|+..|+.+++++|++.  +.+                                   ++..|
T Consensus         1 G~d~~~---~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~-----------------------------------~~~~~   40 (137)
T 3c5r_A            1 GIDPFT---NHRGETLLHIASIKGDIPSVEYLLQN--GSD-----------------------------------PNVKD   40 (137)
T ss_dssp             ---CCC---CTTCCCHHHHHHHHTCHHHHHHHHHT--TCC-----------------------------------SCCCC
T ss_pred             CCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHc--CCC-----------------------------------CCcCC
Confidence            566633   89999999999999999999999987  423                                   23355


Q ss_pred             ccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHc
Q 014994          203 AKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR  278 (415)
Q Consensus       203 ~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~  278 (415)
                      ..|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..
T Consensus        41 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~  119 (137)
T 3c5r_A           41 HAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDE  119 (137)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhc
Confidence            67999999999999999999999999 44   56789999999999999999999986 999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCC
Q 014994          279 NEPEVMVTLLSKGAR  293 (415)
Q Consensus       279 ~~~~~v~~Ll~~Gad  293 (415)
                      +..+++++|.+.+..
T Consensus       120 ~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A          120 SMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHSCC------
T ss_pred             cHHHHHhhccccccC
Confidence            999999888876543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=9.3e-23  Score=189.77  Aligned_cols=107  Identities=21%  Similarity=0.221  Sum_probs=92.5

Q ss_pred             CCccccHHHHHHHhc---CCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHH
Q 014994          201 MHAKIVRRIHKALHS---DDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLH  273 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh  273 (415)
                      .+..|.||||+|+..   |+.+++++|+++| ++   |..|+||||+|+..|+.+++++||+. |+|++.+|..|+||||
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~  264 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALD  264 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCCSCCCTTSCCHHH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHH
Confidence            456899999999997   8999999999999 54   57899999999999999999999996 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCc
Q 014994          274 VAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRR  314 (415)
Q Consensus       274 ~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~  314 (415)
                      +|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       265 ~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          265 IARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999987      578999999998864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=6.1e-23  Score=176.91  Aligned_cols=136  Identities=18%  Similarity=0.181  Sum_probs=118.9

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +..|.||||+|+..|+.++++.|++   +.+                                   ++..|..|.||||+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~-----------------------------------~~~~d~~g~t~L~~   82 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE---DRD-----------------------------------VDAVDENGRTALLF   82 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT---TSC-----------------------------------TTCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh---cCC-----------------------------------CCCcCCCCCCHHHH
Confidence            5678999999999999999999998   322                                   23355689999999


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---C-CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---T-LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVT  286 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~-~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~  286 (415)
                      |+..|+.+++++|+++| ++   + ..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..++.     
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~-----  156 (183)
T 3deo_A           83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKT-----  156 (183)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHHT-----
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhccC-----
Confidence            99999999999999999 55   3 6799999999999999999999997 899999999999999999875432     


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          287 LLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       287 Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                                  ..+.+||++|+..|+.++++.|.++
T Consensus       157 ------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                        4567999999999999999998764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=182.59  Aligned_cols=122  Identities=21%  Similarity=0.249  Sum_probs=114.3

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHHCC-CC---------CCCCchHHHHHHHC---CCHHHHHHHHhcCCCCccccCCCCCh
Q 014994          204 KIVRRIHKALHSDDVELLKLLLDVS-NV---------TLDDAYALHYAAAC---CSPKVFKEVLNMDSAGLNLKDARGRT  270 (415)
Q Consensus       204 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---------~~~g~tpL~~A~~~---g~~~~v~~Ll~~~gadvn~~d~~g~T  270 (415)
                      ...++|+.|+..|+.+.++.|++.| ++         +..|+||||+|+..   |+.+++++||.. |+++|.+|..|+|
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~T  228 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNT  228 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCC
Confidence            4568999999999999999999999 53         55789999999997   899999999997 8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          271 VLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       271 pLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      |||+|+..|+.++|++||++|||++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999998754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=5.9e-23  Score=182.56  Aligned_cols=133  Identities=14%  Similarity=0.114  Sum_probs=105.2

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +..|.||||+|+..|+.+++++|++.  +.+                                   ++..|..|.||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~-----------------------------------~~~~~~~g~t~L~~  112 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDN--RVG-----------------------------------VNGLDKAGSTALYW  112 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHT--TCC-----------------------------------TTCCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhC--CCC-----------------------------------ccccCCCCCCHHHH
Confidence            67789999999999999999999986  423                                   23345679999999


Q ss_pred             HHhcCCHHHHHHHHHC-C-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHH
Q 014994          212 ALHSDDVELLKLLLDV-S-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVT  286 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~-g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~  286 (415)
                      |+..|+.++|++|++. | ++   |..|+||||+|+..|+.+++++||+. |++++.+|..|+||||+|+..++.++++.
T Consensus       113 A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~  191 (222)
T 3ehr_A          113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKK  191 (222)
T ss_dssp             HHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHH
Confidence            9999999999999999 7 44   67899999999999999999999997 99999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCC
Q 014994          287 LLSKGARASETTSDGQ  302 (415)
Q Consensus       287 Ll~~Gadin~~d~~g~  302 (415)
                      |++.|++.+..+..|+
T Consensus       192 l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          192 KQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             ----------------
T ss_pred             Hhccchhhhccchhhh
Confidence            9999999988776553

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=3.9e-22  Score=190.01  Aligned_cols=123  Identities=20%  Similarity=0.158  Sum_probs=115.6

Q ss_pred             ccccHHHHHHHhc-CCHHHHHHHHHCC-CCC-----CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHH
Q 014994          203 AKIVRRIHKALHS-DDVELLKLLLDVS-NVT-----LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVA  275 (415)
Q Consensus       203 ~~g~t~L~~A~~~-g~~~~v~~Ll~~g-~~~-----~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A  275 (415)
                      ..+.|+||+|+.. |+.+++++|+++| ++|     ..|+||||+|+..|+.+++++||.. |+++|.+|..|+||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            4567999999999 9999999999999 553     6789999999999999999999996 999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          276 ARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       276 ~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      +..|+.++|++||++|++++.+|..|.||||+|+..|+.+++++|+..+..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999988744

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.2e-21  Score=149.02  Aligned_cols=89  Identities=37%  Similarity=0.454  Sum_probs=83.2

Q ss_pred             cccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcC
Q 014994          204 KIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRN  279 (415)
Q Consensus       204 ~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~  279 (415)
                      +|+||||+|+..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcC
Confidence            4899999999999999999999999 44   57899999999999999999999986 9999999999999999999999


Q ss_pred             CHHHHHHHHhCCCC
Q 014994          280 EPEVMVTLLSKGAR  293 (415)
Q Consensus       280 ~~~~v~~Ll~~Gad  293 (415)
                      +.+++++|+++||+
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=2.7e-22  Score=158.99  Aligned_cols=104  Identities=24%  Similarity=0.264  Sum_probs=91.3

Q ss_pred             CCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHH
Q 014994          201 MHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAA  276 (415)
Q Consensus       201 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~  276 (415)
                      +|.+|.||||+|+..|+.+++++|+++| ++   |..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHH
Confidence            5678999999999999999999999998 44   56789999999999999999999986 8999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCcHH
Q 014994          277 RRNEPEVMVTLLSKGARASETTSDGQTAV  305 (415)
Q Consensus       277 ~~~~~~~v~~Ll~~Gadin~~d~~g~tpL  305 (415)
                      ..|+.+++++|+++|+|+|.++..|.||-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999988874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=9.6e-22  Score=177.45  Aligned_cols=139  Identities=18%  Similarity=0.168  Sum_probs=108.8

Q ss_pred             cCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHH
Q 014994          132 VEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       132 ~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      +..|.||||+|+..|+.+++++|++   +.++                                   +..|..|.||||+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~-----------------------------------~~~d~~g~t~L~~   83 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE---DRDV-----------------------------------DAVDENGRTALLF   83 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT---TCCT-----------------------------------TCBCTTSCBHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc---CCCC-----------------------------------CCcCCCCCCHHHH
Confidence            4467888888888888888888877   2222                                   2344567888888


Q ss_pred             HHhcCCHHHHHHHHHCC-CC---C-CCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHH
Q 014994          212 ALHSDDVELLKLLLDVS-NV---T-LDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVT  286 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g-~~---~-~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~  286 (415)
                      |+..|+.++|++|+++| ++   + ..|+||||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..++.     
T Consensus        84 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~-----  157 (244)
T 3ui2_A           84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKT-----  157 (244)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHTT-----
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHhc-----
Confidence            88888888888888888 44   2 5588999999999999999999886 899999999999999999864332     


Q ss_pred             HHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          287 LLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       287 Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                                  ..+.||||+|+..|+.+++++|.+.+..
T Consensus       158 ------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          158 ------------TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                        3567899999999999999999887544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=4.4e-21  Score=153.92  Aligned_cols=98  Identities=17%  Similarity=0.092  Sum_probs=91.6

Q ss_pred             CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 014994          230 VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR  309 (415)
Q Consensus       230 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~  309 (415)
                      .+..|.||||+|+..|+.++++.|++. |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            456789999999999999999999996 8999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcchHHHHHhcCCCcc
Q 014994          310 RMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       310 ~~~~~~~v~~l~~~g~~~~  328 (415)
                      ..|+.+++++|++.|+++.
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~  100 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKT  100 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTT
T ss_pred             HcCCHHHHHHHHHcCCCCC
Confidence            9999999999999998875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=9.8e-21  Score=180.33  Aligned_cols=145  Identities=17%  Similarity=0.145  Sum_probs=109.5

Q ss_pred             cCCChhHHHHHHHc-CcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHH
Q 014994          132 VEDVLPILVAAFHC-QLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIH  210 (415)
Q Consensus       132 ~~~g~t~L~~A~~~-g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  210 (415)
                      ...+.|+||.|+.. |+.++++.|++.  +.+++..+                                 .+..|.||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~---------------------------------~~~~g~TpLh  240 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAH--GADVNWVN---------------------------------GGQDNATPLI  240 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCC---------------------------------TTTTCCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccc---------------------------------cccCCCCHHH
Confidence            35678999999999 999999999987  54444222                                 1257899999


Q ss_pred             HHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHH
Q 014994          211 KALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVT  286 (415)
Q Consensus       211 ~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~  286 (415)
                      +|+..|+.++|++|+++| ++   |..|+||||+|+..|+.+++++||.. |++++.+|..|+||||+|+..|+.+++++
T Consensus       241 ~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~l  319 (368)
T 3jue_A          241 QATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETANADIVTL  319 (368)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999999999 55   57899999999999999999999996 99999999999999999999999999999


Q ss_pred             HHhCC---CCCCCCCCCCCcHHHHHHHcC
Q 014994          287 LLSKG---ARASETTSDGQTAVAICRRMT  312 (415)
Q Consensus       287 Ll~~G---adin~~d~~g~tpL~~A~~~~  312 (415)
                      |+..|   ++....+..+.|+++++....
T Consensus       320 Ll~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          320 LRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHC-----------------------
T ss_pred             HHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            99875   445566778899999887754

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=7.2e-21  Score=150.70  Aligned_cols=98  Identities=27%  Similarity=0.367  Sum_probs=94.6

Q ss_pred             CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 014994          230 VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR  309 (415)
Q Consensus       230 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~  309 (415)
                      .|..|+||||+|+..|+.++++.|++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            477899999999999999999999986 8999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcchHHHHHhcCCCcc
Q 014994          310 RMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       310 ~~~~~~~v~~l~~~g~~~~  328 (415)
                      ..|+.+++++|++.|++++
T Consensus        84 ~~~~~~~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADVN  102 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSHH
T ss_pred             HCCCHHHHHHHHHcCCCCC
Confidence            9999999999999999875

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=8.2e-20  Score=167.91  Aligned_cols=128  Identities=20%  Similarity=0.202  Sum_probs=106.4

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHh
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALH  214 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  214 (415)
                      ..++|+.|+..|+.+.+..++..  +.+++..                             ..++..+..|.||||+|+.
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~--g~~~~~~-----------------------------~~l~~~~~~g~t~Lh~A~~  178 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYAD--GVDLTEK-----------------------------IPLANGHEPDETALHLAVR  178 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT--TCCTTSB-----------------------------CCCSSCSSTTCBHHHHHHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHh--hcchhhh-----------------------------ccccccccCCCCcchHHHH
Confidence            34677777777777777777765  3222110                             1134456789999999999


Q ss_pred             c---CCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          215 S---DDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       215 ~---g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      .   |+.+++++|+++| ++   |..|+||||+|+..|+.+++++||+. |+|+|.+|..|+||||+|+..|+.+++++|
T Consensus       179 ~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~v~~L  257 (278)
T 1dcq_A          179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELL  257 (278)
T ss_dssp             HCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCccCCCCCHHHHHHHcCCHHHHHHH
Confidence            9   8999999999999 54   57899999999999999999999995 999999999999999999999999999999


Q ss_pred             HhCCCCC
Q 014994          288 LSKGARA  294 (415)
Q Consensus       288 l~~Gadi  294 (415)
                      +++|++.
T Consensus       258 l~~ga~~  264 (278)
T 1dcq_A          258 TQALSGR  264 (278)
T ss_dssp             HHHHTTC
T ss_pred             HHcCCCC
Confidence            9999864

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=5e-20  Score=144.75  Aligned_cols=91  Identities=26%  Similarity=0.209  Sum_probs=82.1

Q ss_pred             CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 014994          229 NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC  308 (415)
Q Consensus       229 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A  308 (415)
                      .++.+|.||||+|+..|+.+++++|+.. |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            4577889999999999999999999986 899999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcchHHHH
Q 014994          309 RRMTRRKDYIEA  320 (415)
Q Consensus       309 ~~~~~~~~v~~l  320 (415)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999888876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=7.1e-18  Score=132.32  Aligned_cols=89  Identities=18%  Similarity=0.280  Sum_probs=80.0

Q ss_pred             CCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHH
Q 014994          198 VDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLH  273 (415)
Q Consensus       198 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh  273 (415)
                      ....+.+|.||||+|+..|+.+++++|++.| ++   |..|+||||+|+..|+.+++++|+.. |++++.+|..|+||||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCcHHH
Confidence            4446678999999999999999999999999 54   57899999999999999999999986 9999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q 014994          274 VAARRNEPEVMVTL  287 (415)
Q Consensus       274 ~A~~~~~~~~v~~L  287 (415)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999987

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.15  E-value=9e-11  Score=94.03  Aligned_cols=90  Identities=18%  Similarity=0.296  Sum_probs=70.1

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccc-cccccCCCchhHHHHHHHHHHHhcccCCCCCCCc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLL-TDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEV   80 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~   80 (415)
                      +.++++|++|++||+||+++|+||+++|.+...+    ....+.+ .++       .++.|..+++|+|+|++...    
T Consensus        32 v~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~-------~~~~f~~ll~~~Ytg~~~~~----   96 (127)
T 1r29_A           32 VVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEI-------NPEGFNILLDFMYTSRLNLR----   96 (127)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTS-------CHHHHHHHHHHHHHSCCCCC----
T ss_pred             EEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCC-------CHHHHHHHHHHHcCCCcCcC----
Confidence            4678999999999999999999999999876432    3345555 444       45599999999999987542    


Q ss_pred             ccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           81 SACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        81 ~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                                      .......|..|..++...+.+.+.+.
T Consensus        97 ----------------~~~~~~ll~~A~~~~i~~L~~~c~~~  122 (127)
T 1r29_A           97 ----------------EGNIMAVMATAMYLQMEHVVDTCRKF  122 (127)
T ss_dssp             ----------------TTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                            13366788999999999988876553

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.14  E-value=9.9e-11  Score=92.58  Aligned_cols=88  Identities=19%  Similarity=0.206  Sum_probs=69.5

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|++|++||+||+++|+||+++|.+..       ...+.+.+       +.++.|..+++|+|+|++...+    
T Consensus        27 v~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~-------~~~~~f~~ll~~iYtg~~~~~~----   88 (119)
T 3b84_A           27 ATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPA-------GFAEIFGLLLDFFYTGHLALTS----   88 (119)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECG-------GGHHHHHHHHHHHHHSCCCCCT----
T ss_pred             eEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCC-------CCHHHHHHHHHHHcCCCCccCH----
Confidence            45789999999999999999999999998763       13444443       4455999999999999875421    


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhC
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWL  123 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g  123 (415)
                                      +.....|..|..++..++.+.+.+.-
T Consensus        89 ----------------~~v~~ll~~A~~~~i~~L~~~C~~~l  114 (119)
T 3b84_A           89 ----------------GNRDQVLLAARELRVPEAVELCQSFK  114 (119)
T ss_dssp             ----------------TTHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred             ----------------HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence                            23567899999999999998877653

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.13  E-value=1.1e-10  Score=90.76  Aligned_cols=90  Identities=12%  Similarity=0.150  Sum_probs=65.8

Q ss_pred             eeeeecc----cchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCC
Q 014994            2 LRLLLRA----NQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPP   77 (415)
Q Consensus         2 ~~~~~~~----~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~   77 (415)
                      +.+++++    +.|++||+||+++|+||+++|.+...+    +...+.+.++.       .+.|..+++|+|+|++...+
T Consensus        11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e----~~~~i~l~~~~-------~~~f~~~l~~iYt~~~~~~~   79 (109)
T 2vkp_A           11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAE----VKSEIHIPDVE-------PAAFLILLKYMYSDEIDLEA   79 (109)
T ss_dssp             EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------CCEEEETTSC-------HHHHHHHHHHHHHCCCCCCT
T ss_pred             EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCccc----CCCeEEeCCCC-------HHHHHHHHHHHcCCCccCCH
Confidence            4567887    899999999999999999999877443    22445554444       45999999999999875422


Q ss_pred             CCcccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           78 PEVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        78 ~~~~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                                          +.....+..|..++...+.+.+.+.
T Consensus        80 --------------------~~~~~ll~~A~~~~~~~L~~~c~~~  104 (109)
T 2vkp_A           80 --------------------DTVLATLYAAKKYIVPALAKACVNF  104 (109)
T ss_dssp             --------------------TTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHHHHhCcHHHHHHHHHH
Confidence                                2356788999999998888876543

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.12  E-value=1.7e-10  Score=97.57  Aligned_cols=123  Identities=18%  Similarity=0.244  Sum_probs=90.7

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|++|++||+||+++|+||+++|.+...++   ....+.+.++       .++.|..+++|+|+|++..      
T Consensus        37 v~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~~~i~l~~~-------~~~~f~~~l~~~Yt~~~~~------  100 (172)
T 3htm_A           37 CCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEINDV-------EPEVFKEMMCFIYTGKAPN------  100 (172)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGG---GTTEEEECSS-------CHHHHHHHHHHHHHSCCTT------
T ss_pred             eEEEECCEEEEeeHHHHHHcCHHHHHHHccCcccc---CCCeEEecCC-------CHHHHHHHHHHHhCCCCCC------
Confidence            46789999999999999999999999999764321   1134444444       4459999999999998743      


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQR  157 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~  157 (415)
                                    ........|..|..++..++.+.+.+.-.....   ..+....+.+|..++..++.+.+++.
T Consensus       101 --------------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~~~~~~A~~~~~~~L~~~~~~~  159 (172)
T 3htm_A          101 --------------LDKMADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILILADLHSADQLKTQAVDF  159 (172)
T ss_dssp             --------------GGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------cHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence                          123466789999999999888866654332212   24556778899999998877776664

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.12  E-value=1.2e-10  Score=95.39  Aligned_cols=93  Identities=18%  Similarity=0.290  Sum_probs=69.3

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|+.|++||+||+++|+||+++|.+....+ ......+.+.++       .++.|..+|+|+|+|++...     
T Consensus        50 v~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~-e~~~~~I~l~~v-------~~~~f~~lL~fiYtg~~~i~-----  116 (144)
T 2ppi_A           50 AHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD-DGSTYKIELEGI-------SVMVMREILDYIFSGQIRLN-----  116 (144)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCSS-------CHHHHHHHHHHHTTSCCCCC-----
T ss_pred             eEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccc-cCCCcEEEeCCC-------CHHHHHHHHHHHhCCCCCCC-----
Confidence            45789999999999999999999999998764320 012234555444       44599999999999987542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                                     .+.....|..|..++...+.+.+.+.
T Consensus       117 ---------------~~~v~~ll~~A~~l~i~~L~~~C~~~  142 (144)
T 2ppi_A          117 ---------------EDTIQDVVQAADLLLLTDLKTLCCEF  142 (144)
T ss_dssp             ---------------TTTHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             ---------------HHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence                           22367789999999999998877653

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.11  E-value=1.2e-10  Score=92.19  Aligned_cols=90  Identities=13%  Similarity=0.258  Sum_probs=67.5

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|++|++||+||+++|+||+++|.+...++   ....+.+.++       ..+.|..+++|+|+|++...     
T Consensus        28 v~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~---~~~~i~l~~~-------~~~~f~~ll~~~Yt~~~~~~-----   92 (120)
T 2if5_A           28 VVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD---QQNVYEIDFV-------SAEALTALMDFAYTATLTVS-----   92 (120)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSS-------CHHHHHHHHHHHHHSCCCCC-----
T ss_pred             eEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcccc---CCceEEeCCC-------CHHHHHHHHHHHcCCCCccC-----
Confidence            45789999999999999999999999999764331   1234444443       44599999999999987542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQH  121 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~  121 (415)
                                     .......+..|..++...+.+.+.+
T Consensus        93 ---------------~~~~~~ll~~A~~~~i~~L~~~C~~  117 (120)
T 2if5_A           93 ---------------TANVGDILSAARLLEIPAVSHVCAD  117 (120)
T ss_dssp             ---------------GGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                           2346778899999999999887765

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.10  E-value=1.9e-10  Score=90.58  Aligned_cols=89  Identities=18%  Similarity=0.251  Sum_probs=68.2

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|++|++||+||+++|+||+++|.+..       ...+.+.    . ..+.++.|..+++|+|+|++...     
T Consensus        25 v~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~----~-~~~~~~~f~~ll~~~Yt~~~~~~-----   87 (116)
T 2vpk_A           25 CTIVIGEFQFKAHRNVLASFSEYFGAIYRSTS-------ENNVFLD----Q-SQVKADGFQKLLEFIYTGTLNLD-----   87 (116)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHTTCC-------CSCEECC----T-TTCCHHHHHHHHHHHHHSCCCCC-----
T ss_pred             EEEEECCEEEeccHHHHhhcCHHHHHHHcCCC-------CCeEEee----c-CCCCHHHHHHHHHHHcCCCcccC-----
Confidence            45789999999999999999999999998761       1233333    1 12455699999999999987542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                                     .+.....+..|..++...+.+.+.+.
T Consensus        88 ---------------~~~v~~ll~~A~~~~i~~L~~~C~~~  113 (116)
T 2vpk_A           88 ---------------SWNVKEIHQAADYLKVEEVVTKCKIK  113 (116)
T ss_dssp             ---------------TTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                           12366788999999999998877654

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.08  E-value=2.6e-10  Score=102.97  Aligned_cols=125  Identities=19%  Similarity=0.285  Sum_probs=86.8

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|++||+||+||+++|+||+++|.+....+ ......+.+.++       .++.|..+++|+|+|++...     
T Consensus        34 v~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~-e~~~~~i~l~~v-------~~~~f~~ll~~~Yt~~~~i~-----  100 (256)
T 3hve_A           34 AHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD-DGSTYKIELEGI-------SVMVMREILDYIFSGQIRLN-----  100 (256)
T ss_dssp             EEEEETTEEEEECHHHHHTTCHHHHHTC------------CEEECSSC-------CHHHHHHHHHHHHHSCCCCC-----
T ss_pred             eEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcc-cCCCCeEEeCCC-------CHHHHHHHHhhccCCCCccc-----
Confidence            46789999999999999999999999998764310 012234444444       45599999999999988542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQR  157 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~  157 (415)
                                     .+.....|..|..++..++++.+.+.-.....   ..+....+.+|..++..++.+.+.+.
T Consensus       101 ---------------~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~---~~n~~~i~~~A~~~~~~~L~~~~~~~  158 (256)
T 3hve_A          101 ---------------EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA---AENCIGIRDFALHYCLHHVHYLATEY  158 (256)
T ss_dssp             ----------------CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCC---SSTTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------HhHHHHHHHHHHHHChHHHHHHHHHHHHhhCC---HhhHHHHHHHHHHcCcHHHHHHHHHH
Confidence                           12367789999999999988866655433222   34567788899999987777666554

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.07  E-value=2.9e-10  Score=89.86  Aligned_cols=86  Identities=17%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|++|++||+||+++|+||+++|.+..        ..+.+.+       +.++.+..+++|+|+|++...+    
T Consensus        30 v~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~--------~~i~l~~-------~~~~~f~~ll~~~Ytg~~~i~~----   90 (119)
T 2q81_A           30 CTFVVDGVHFKAHKAVLAACSEYFKMLFVDQK--------DVVHLDI-------SNAAGLGQVLEFMYTAKLSLSP----   90 (119)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHHHCC--------SGGGGGG-------CCHHHHHHHHHHHHHSCCCCCT----
T ss_pred             eEEEECCEEEehhHHHHHHcCHHHHHHHcCCC--------CEEEeCC-------CCHHHHHHHHHHHcCCCCccCH----
Confidence            45789999999999999999999999998741        2333333       3456999999999999875421    


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                                      +.....|..|..++..++.+.+.+.
T Consensus        91 ----------------~~~~~ll~~A~~l~i~~L~~~C~~~  115 (119)
T 2q81_A           91 ----------------ENVDDVLAVATFLQMQDIITACHAL  115 (119)
T ss_dssp             ----------------TTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                            2367789999999999998877653

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.07  E-value=1.9e-10  Score=93.08  Aligned_cols=89  Identities=19%  Similarity=0.205  Sum_probs=68.9

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|++|++||+||+++|+||+++|.+..       ...+.+.+       +.++.|..+|+|+|+|++...     
T Consensus        28 v~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~-------~~~i~l~~-------~~~~~f~~lL~fiYtg~~~i~-----   88 (135)
T 2yy9_A           28 ATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT-------GGSVVLPA-------GFAEIFGLLLDFFYTGHLALT-----   88 (135)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHTCC-----------CCEEECG-------GGHHHHHHHHHHHHHSCCCCC-----
T ss_pred             eEEEECCEEEehHHHHHHHhCHHHHHHHcCCC-------CCeEEeCC-------CCHHHHHHHHHHHhCCCCCCC-----
Confidence            46789999999999999999999999998763       12444443       445599999999999987542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCC
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLL  124 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~  124 (415)
                                     .+.....|..|..++...+++.+.+.-.
T Consensus        89 ---------------~~~v~~ll~~A~~l~i~~L~~~C~~~l~  116 (135)
T 2yy9_A           89 ---------------SGNRDQVLLAAKELRVPEAVELCQSFQP  116 (135)
T ss_dssp             ---------------TTTHHHHHHHHHHTTCHHHHHHHHHCCC
T ss_pred             ---------------HHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence                           1236788999999999999998887643

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.06  E-value=2.1e-10  Score=91.01  Aligned_cols=86  Identities=21%  Similarity=0.326  Sum_probs=67.5

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|++|++||+||+++|+||+++|.+..        ..+.+.++       .++.|..+++|+|+|++...     
T Consensus        31 v~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~--------~~i~l~~~-------~~~~f~~ll~~~Ytg~~~~~-----   90 (121)
T 1buo_A           31 VVIMVDSQEFHAHRTVLACTSKMFEILFHRNS--------QHYTLDFL-------SPKTFQQILEYAYTATLQAK-----   90 (121)
T ss_dssp             EEEEESSCEEEECHHHHHHHCHHHHHHTTSCC--------SEEEECSS-------CHHHHHHHHHHHHHSCCCCC-----
T ss_pred             EEEEECCEEEehhHHHHhhcCHHHHHHHcCCC--------cEEEeCCC-------CHHHHHHHHHhhcCCCcCCC-----
Confidence            46789999999999999999999999998641        24444444       45599999999999987542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                                     .+.....+..|..++...+.+.+.+.
T Consensus        91 ---------------~~~~~~ll~~A~~~~i~~L~~~c~~~  116 (121)
T 1buo_A           91 ---------------AEDLDDLLYAAEILEIEYLEEQCLKM  116 (121)
T ss_dssp             ---------------GGGHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence                           23467889999999999888876543

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.04  E-value=2.5e-10  Score=92.79  Aligned_cols=92  Identities=15%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|++|++||+||+++|+||+++|.+...+    . ..+.+.      ..+.++.|..+|+|+|+|++...     
T Consensus        39 v~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e----~-~~i~l~------~~v~~~~~~~lL~~~Ytg~~~i~-----  102 (138)
T 2z8h_A           39 VTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA----E-LTVTLP------EEVTVKGFEPLIQFAYTAKLILS-----  102 (138)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT----T-EEEECC------TTSCHHHHHHHHHHHHHSCCCCC-----
T ss_pred             eEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC----C-ceEEeC------CCCCHHHHHHHHHHhcCCCcccC-----
Confidence            4678999999999999999999999999876432    1 233331      13556699999999999987542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCC
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLL  124 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~  124 (415)
                                     .+.....|..|..++...+.+.+.+.-.
T Consensus       103 ---------------~~~v~~ll~~A~~~~i~~L~~~C~~~l~  130 (138)
T 2z8h_A          103 ---------------KDNVDEVCRCVEFLSVHNIEESCFQFLK  130 (138)
T ss_dssp             ---------------TTTHHHHHHHHHHHTCGGGHHHHHHHTT
T ss_pred             ---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                           2236778999999999888888776643

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.01  E-value=2.2e-10  Score=93.96  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=69.8

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|++|++||+||+++|+||+++|.+...++   ....+.+.+       +..+.|..+++|+|+|++..      
T Consensus        28 v~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~~~i~l~~-------~~~~~~~~~l~~~Y~~~~~~------   91 (145)
T 4eoz_A           28 CCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEIND-------VEPEVFKEMMCFIYTGKAPN------   91 (145)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHH---HHTEEEECS-------SCHHHHHHHHHHHHHSCCTT------
T ss_pred             eEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCC---CCceEEecC-------CCHHHHHHHHHhhccCccCC------
Confidence            46789999999999999999999999998763220   113444444       34559999999999998743      


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNM  149 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~  149 (415)
                                    ..+.....+..|..++..++.+.+.+.-.....   ..+....+.+|..++..+
T Consensus        92 --------------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~n~~~~l~~A~~~~~~~  142 (145)
T 4eoz_A           92 --------------LDKMADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILILADLHSADQ  142 (145)
T ss_dssp             --------------GGGTHHHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred             --------------cHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCHHH
Confidence                          123466789999999999998887766443322   234455566666665443

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.00  E-value=1.1e-09  Score=101.84  Aligned_cols=123  Identities=18%  Similarity=0.254  Sum_probs=92.4

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|+.|++||+|||++||||+++|.+...++   ....+.+.++-|.       .|..+|+|+|+|.+..      
T Consensus       177 v~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~---~~~~i~l~~~~~~-------~f~~~L~~iYt~~~~~------  240 (312)
T 3hqi_A          177 CCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEINDVEPE-------VFKEMMCFIYTGKAPN------  240 (312)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHTTC--------CCSEEEECSSCHH-------HHHHHHHHHHHSCCTT------
T ss_pred             eEEEECCEEEeHHHHHHHHcCHHHHHHhccCcccc---CCceEEecCCCHH-------HHHHHHHhhcCCCCCC------
Confidence            45788999999999999999999999998764331   2245666655555       9999999999987633      


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQR  157 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~  157 (415)
                                    .......+|.+|-.++...+.+.+.+....-..   ..+..+.|.+|..++..++.+.+++.
T Consensus       241 --------------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~n~~~~l~~A~~~~~~~L~~~~~~~  299 (312)
T 3hqi_A          241 --------------LDKMADDLLAAADKYALERLKVMCEDALCSNLS---VENAAEILILADLHSADQLKTQAVDF  299 (312)
T ss_dssp             --------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---TTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------hHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                          235577889999999999988877766543322   24556789999999998888777765

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=98.94  E-value=5.4e-10  Score=102.25  Aligned_cols=129  Identities=14%  Similarity=0.183  Sum_probs=89.0

Q ss_pred             eeeeec---ccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCC
Q 014994            2 LRLLLR---ANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPP   78 (415)
Q Consensus         2 ~~~~~~---~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~   78 (415)
                      |.++++   |+.||+||+||+++|+||+++|.+...++   ....+.+.++... ..+..++|..+++|+|+|++...  
T Consensus        35 v~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~---~~~~i~l~~~~~~-~~v~~~~f~~ll~~~Ytg~~~i~--  108 (279)
T 3i3n_A           35 ITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSES---RSGRVEMRKWSSE-PGPEPDTVEAVIEYMYTGRIRVS--  108 (279)
T ss_dssp             EEEECC----CEEEECHHHHHHHCTTSGGGCCC-----------EEECCCCSST-TCSCHHHHHHHHHHHHHSEEEEE--
T ss_pred             eEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccc---cCCeEEecccccc-CCCCHHHHHHHHHhhCcCCcccC--
Confidence            456776   99999999999999999999998774331   2245566544332 25677799999999999987432  


Q ss_pred             CcccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHh
Q 014994           79 EVSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQR  157 (415)
Q Consensus        79 ~~~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~  157 (415)
                                        .+.+...|..|..++...+.+.+.+.-.....   ..+....+.+|..++..++.+.+.+.
T Consensus       109 ------------------~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~---~~n~~~i~~~A~~~~~~~L~~~~~~~  166 (279)
T 3i3n_A          109 ------------------TGSVHEVLELADRFLLIRLKEFCGEFLKKKLH---LSNCVAIHSLAHMYTLSQLALKAADM  166 (279)
T ss_dssp             ------------------TTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---TTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC---cchHHHHHHHHHHcCcHHHHHHHHHH
Confidence                              23367789999999999988866655333222   24556778889888887776666554

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=98.94  E-value=1.3e-10  Score=92.56  Aligned_cols=87  Identities=16%  Similarity=0.255  Sum_probs=62.4

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|++|++||+||+++|+||+++|.+...+    . ..+.+    +.  .+.++.|..+|+|+|+|++...     
T Consensus        32 v~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e----~-~~i~l----~~--~v~~~~f~~lL~~iYtg~~~i~-----   95 (124)
T 2ihc_A           32 VTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG----E-LNITL----PE--EVTVKGFEPLIQFAYTAKLILS-----   95 (124)
T ss_dssp             EEEEETTEEEEECHHHHHHHBHHHHHHHTTC-------C-EEEEC----CT--TSCHHHHHHHHHHHHHSEEEEE-----
T ss_pred             EEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC----C-ceEee----cC--CcCHHHHHHHHHHhcCCCcccC-----
Confidence            4678999999999999999999999999876432    1 23333    11  3556699999999999987432     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLL  119 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~L  119 (415)
                                     .+.....|..|..++...+.+.+
T Consensus        96 ---------------~~~v~~ll~~A~~~~~~~L~~~C  118 (124)
T 2ihc_A           96 ---------------KENVDEVCKCVEFLSVHNIEESC  118 (124)
T ss_dssp             ---------------TTTHHHHHHHHHHHTBSSCCGGG
T ss_pred             ---------------HHHHHHHHHHHHHHCCHHHHHHH
Confidence                           22356778888888776655443

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=98.92  E-value=1.2e-09  Score=85.72  Aligned_cols=81  Identities=20%  Similarity=0.340  Sum_probs=61.0

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|++|++||+||+++|+||+++|.+..        ..+.+.++       ..+.|..+++|+|+|++..      
T Consensus        34 v~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~~--------~~i~l~~~-------~~~~f~~~l~~~Ytg~~~~------   92 (116)
T 3fkc_A           34 VTVIVEDRKFRAHKNILSASSTYFHQLFSVAG--------QVVELSFI-------RAEIFAEILNYIYSSKIVR------   92 (116)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHTTSCC--------SEEEECSS-------CHHHHHHHHHHHTTSCCCS------
T ss_pred             EEEEECCEEEehhHHHHHHcCHHHHHHHcCCC--------CEEEeCCC-------CHHHHHHHHHhhcCCCcCC------
Confidence            45778999999999999999999999998751        24444444       4459999999999998721      


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRV  116 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v  116 (415)
                                   ...+.....|..|..++...+.
T Consensus        93 -------------~~~~~~~~ll~~A~~l~i~~L~  114 (116)
T 3fkc_A           93 -------------VRSDLLDELIKSGQLLGVKFIA  114 (116)
T ss_dssp             -------------CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             -------------CCHHHHHHHHHHHHHhCccccC
Confidence                         1233456778888888776654

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=98.91  E-value=2.8e-10  Score=90.81  Aligned_cols=84  Identities=18%  Similarity=0.297  Sum_probs=60.8

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.++++|++|++||+||+++|+||+++|.+...+     ...+.+.+      .+.++.|..+++|+|+|++...+    
T Consensus        35 v~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~------~~~~~~f~~~l~~iYtg~~~~~~----   99 (125)
T 3ohu_A           35 VTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPE------EVTARGFGPLLQFAYTAKLLLSR----   99 (125)
T ss_dssp             EEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCT------TCCHHHHHHHHHHHTTSEEEECT----
T ss_pred             eEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCC------CCCHHHHHHHHHhHcCCceEECH----
Confidence            4678999999999999999999999999876332     23333333      24556999999999999874421    


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRV  116 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v  116 (415)
                                      +.....|..|..++...+.
T Consensus       100 ----------------~~v~~ll~~A~~l~i~~L~  118 (125)
T 3ohu_A          100 ----------------ENIREVIRCAEFLRMHNLE  118 (125)
T ss_dssp             ----------------TTHHHHHHHHHHHTBSSCT
T ss_pred             ----------------HHHHHHHHHHHHhCCHHHH
Confidence                            2355667777776655443

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=98.90  E-value=3.8e-10  Score=90.58  Aligned_cols=86  Identities=21%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|++|++||+||+++|+||+++|.+.       ....+.+.    .  .+.++.|..+++|+|+|++...+    
T Consensus        36 v~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~----~--~~~~~~f~~ll~~iYtg~~~i~~----   98 (129)
T 3ga1_A           36 VSVVVKGHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELP----A--AVQPQSFQQILSFCYTGRLSMNV----   98 (129)
T ss_dssp             EEEEETTEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECC----T--TCCHHHHHHHHHHHHHSEEECCT----
T ss_pred             eEEEECCEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEEC----C--CCCHHHHHHHHHHHhCCccccCH----
Confidence            4578899999999999999999999999886       11344442    1  24455999999999999875422    


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQ  120 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll  120 (415)
                                      +.....|..|..++...+++.+.
T Consensus        99 ----------------~~~~~ll~~A~~~~i~~l~~~C~  121 (129)
T 3ga1_A           99 ----------------GDQDLLMYTAGFLQIQEIMEKGT  121 (129)
T ss_dssp             ----------------TTHHHHHHHHHHTTBTTSSCC--
T ss_pred             ----------------HHHHHHHHHHHHhCCHHHHHHHH
Confidence                            23566788888888776665443

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=98.82  E-value=2.1e-09  Score=84.75  Aligned_cols=83  Identities=11%  Similarity=0.051  Sum_probs=64.6

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      |.++++|++|++||+|||++|+||++            ....+.+.+       +.++.|..+++|+|||++..      
T Consensus        33 v~l~v~~~~f~aHk~vLaa~S~yF~~------------~~~~i~l~~-------v~~~~f~~ll~fiYtg~~~i------   87 (119)
T 3m5b_A           33 TLITVGSQEFPAHSLVLAGVSQQLGR------------RGQWALGEG-------ISPSTFAQLLNFVYGESVEL------   87 (119)
T ss_dssp             EEEEETTEEEEECHHHHHTTCGGGCC------------CEEEECCSS-------CCHHHHHHHHHHHTTCCEEE------
T ss_pred             eEEEECCEEEeeEHHHHHHcCHHHhc------------CCCEEEeCC-------CCHHHHHHHHHHHcCCCcCc------
Confidence            45789999999999999999999984            112333333       45569999999999998743      


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhC
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHWL  123 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g  123 (415)
                                    ..+.....|..|..++...+++.+.+..
T Consensus        88 --------------~~~~v~~ll~aA~~l~i~~l~~~C~~~~  115 (119)
T 3m5b_A           88 --------------QPGELRPLQEAARALGVQSLEEACWRAR  115 (119)
T ss_dssp             --------------CGGGHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred             --------------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                          2334677899999999999999887753

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=96.56  E-value=0.0011  Score=49.53  Aligned_cols=57  Identities=7%  Similarity=0.092  Sum_probs=39.2

Q ss_pred             eee-ecccchhhHHHHHhhccHHHHHHHccCCCCCCCCC-CccccccccccCCCchhHHHHHHHHHHHh
Q 014994            3 RLL-LRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEG-KPKYLLTDLVPCDGKFGFEAFNDILHYIY   69 (415)
Q Consensus         3 ~~~-~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~L~~ly   69 (415)
                      +|+ -||.+|++|+.+ |..|++|++||.+....  .+. ...+.+.       .|....+..++.|+|
T Consensus         5 ~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~--~E~~~~~I~l~-------~V~~~iL~kViey~~   63 (97)
T 4ajy_C            5 KLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQF--AENETNEVNFR-------EIPSHVLSKVCMYFT   63 (97)
T ss_dssp             EEECTTCCEEEEEHHH-HTTSHHHHHHHCCC----------CEEECT-------TSCHHHHHHHHHHHH
T ss_pred             EEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCc--cccCCCceECC-------CCCHHHHHHHHHHHH
Confidence            444 378999999999 99999999999864211  111 1233333       355559999999999

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=94.89  E-value=0.0051  Score=50.49  Aligned_cols=110  Identities=13%  Similarity=0.044  Sum_probs=41.2

Q ss_pred             eeeee-cccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCc
Q 014994            2 LRLLL-RANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEV   80 (415)
Q Consensus         2 ~~~~~-~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~   80 (415)
                      ++|.- ||..|++|+++ |..|++|+.||......      .      .+|. ..|....+..++.|+|..+-.+.+...
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~~~------~------~Ipl-~~V~~~iL~kVieyc~~h~~~~~~~~~   71 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDCVD------N------GVPL-PNVTSKILAKVIEYCKRHVEAAASKAE   71 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC------------------------CC-TTSCHHHHHHHHHC-------------
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccCCC------C------ceeC-CcCcHHHHHHHHHHHHHcccCCCcccc
Confidence            45664 89999999998 88999999999765211      1      2454 456677999999999997654321110


Q ss_pred             cc-c----cCCCC-CC-cCCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCCC
Q 014994           81 SA-C----VDDAC-VH-VSCPSSVNYVIELMYASAALQMKDRVFLLQHWLLG  125 (415)
Q Consensus        81 ~~-~----~~~~c-~~-~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~  125 (415)
                      .. .    ..... |. .........+..+|..|-..+...++.+..+.-++
T Consensus        72 ~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~  123 (160)
T 2p1m_A           72 AVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVAD  123 (160)
T ss_dssp             -----------------------------CHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            00 0    00000 10 00112233456677778888888888777665443

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=94.07  E-value=0.091  Score=41.89  Aligned_cols=108  Identities=15%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             eeeee-cccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCc
Q 014994            2 LRLLL-RANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEV   80 (415)
Q Consensus         2 ~~~~~-~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~   80 (415)
                      ++|.- ||..|.+|+++ |..|.+|+.||.... .      ..      +|. ..|....+..++.|+|..+-.+.+...
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~-~------~~------Ipl-~~V~~~iL~kVieyc~~h~~~~~~~~~   68 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG-M------DP------VPL-PNVNAAILKKVIQWCTHHKDDPPPPED   68 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC-C------SS------EEC-TTCCHHHHHHHHHHHHHHTTCC-----
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC-C------Cc------eec-CCcCHHHHHHHHHHHHHhccCCCcccc
Confidence            45555 88999999998 899999999998742 1      12      444 346667999999999997644322211


Q ss_pred             cccc----CCCC-CCc-CCCchhhhhHHHHHHHHHcCcHHHHHHHHHhCC
Q 014994           81 SACV----DDAC-VHV-SCPSSVNYVIELMYASAALQMKDRVFLLQHWLL  124 (415)
Q Consensus        81 ~~~~----~~~c-~~~-~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~  124 (415)
                      ..+.    ..-. |.. ........+.+++..|-..+...++.+..+.-+
T Consensus        69 ~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA  118 (141)
T 1fs1_B           69 DENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA  118 (141)
T ss_dssp             ------------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            0000    0000 000 012233456677777777788777776665543

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=89.44  E-value=0.68  Score=34.73  Aligned_cols=94  Identities=18%  Similarity=0.195  Sum_probs=61.5

Q ss_pred             eeeeecccchhhHHHHHhhcc-HHHHHHHccCCCC-CCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCC
Q 014994            2 LRLLLRANQWRLIAAYCLSAV-KFFRRLLNLRNDG-SVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPE   79 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s-~~f~~~f~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~   79 (415)
                      |+|-|+|..|...+..|+... .+|..||.+...- ...... ...+-+--|.       .|..+|.|+.+|++..++ .
T Consensus         8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~-~~~fiDRdp~-------~F~~IL~~lr~g~l~~p~-~   78 (107)
T 3drz_A            8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDET-GAYLIDRDPT-------YFGPVLNYLRHGKLVINK-D   78 (107)
T ss_dssp             EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTT-SCEEECSCHH-------HHHHHHHHHHHSCCCCCT-T
T ss_pred             EEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCC-ceEEecCChH-------HHHHHHHHhCCCeeCCCC-C
Confidence            678899999999999998665 4678887643110 001111 1122233455       999999999999874421 1


Q ss_pred             cccccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           80 VSACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        80 ~~~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                             .|           ....+.-|..+|..++++.|.+.
T Consensus        79 -------~~-----------~~~l~~Ea~fy~l~~L~~~l~~~  103 (107)
T 3drz_A           79 -------LA-----------EEGVLEEAEFYNITSLIKLVKDK  103 (107)
T ss_dssp             -------SC-----------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             -------CC-----------HHHHHHHHHHCCCHHHHHHHHHH
Confidence                   11           23457788889999999987653

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=85.38  E-value=0.71  Score=34.11  Aligned_cols=59  Identities=8%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             eeeee-cccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhccc
Q 014994            2 LRLLL-RANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGK   72 (415)
Q Consensus         2 ~~~~~-~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~   72 (415)
                      ++|.- ||..|.+++.+ |..|..++.|+..+. .   +....      +|. ..|....+..++.|++..+
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e---~~~~~------Ipl-p~V~~~iL~kVieyc~~h~   65 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-R---ESKGR------IEL-KQFDSHILEKAVEYLNYNL   65 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-T---TCTTE------EEE-TTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-c---cCCCc------eec-CCcCHHHHHHHHHHHHHhc
Confidence            45665 89999999997 889999999998732 1   01122      344 3456669999999998753

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=83.58  E-value=0.73  Score=33.79  Aligned_cols=62  Identities=10%  Similarity=0.099  Sum_probs=41.7

Q ss_pred             eeeee-cccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhccc
Q 014994            2 LRLLL-RANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGK   72 (415)
Q Consensus         2 ~~~~~-~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~   72 (415)
                      ++|.- ||..|.+++.+ |..|..++.|+......  .+..     .+.+|. ..|....+..++.|++..+
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~--~e~~-----~~~Ipl-~~V~~~iL~kVieyc~~h~   65 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQF--AENE-----TNEVNF-REIPSHVLSKVCMYFTYKV   65 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC---------------CEEEC-SSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCc--cccc-----CCceeC-CCCCHHHHHHHHHHHHHcc
Confidence            45664 89999999997 88999999999864210  0111     012444 3566669999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	415
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 189 QESEANIAEVDPMHAKIVRRIHKALHSDDVE-----LLKLLLDVSNVTLDDAYALHYAAA 243
            E  A++   D M    +     +    DVE     LL    DV+         L  A  
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228

Query: 244 CCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
                + + +L  +   +N  D+ G+T L +A      ++   L  +GA
Sbjct: 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 209 IHKALHSDDVELLKLLLD--------VSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG 260
           +  A     VE+LK+LLD          N+  +       ++     +    +L    A 
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSK-GARASETTSDGQTA 304
           +N++  RG+T L +A  +    ++  LL +     ++T SDG+TA
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNE----PEVMVTLLSKGA 292
           AL  AA     +V K +L+   A +N  D  GR  L  A   ++      +   LL  GA
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 293 RASETTSDGQTAVAICRRM 311
             +     G+T + +    
Sbjct: 211 DVNVRGERGKTPLILAVEK 229

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 2e-09
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE 296
            LH A+      + K +L    A  N+ + +  T LH+AAR    EV   LL   A+ + 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 297 TTSDGQTA 304
              D QT 
Sbjct: 62  KAKDDQTP 69

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 6e-09
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 5/124 (4%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H A     + ++K LL      +   +     LH AA     +V K +L    A +N K
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-AKVNAK 62

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQG 324
               +T LH AAR     ++  LL   A  +  T+ G T + I  R    +  +   ++ 
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 325 QETN 328
               
Sbjct: 123 ASQA 126

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H       V +  +L+     V   T      LH A+   + K+ K +L   +   N K
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAK 326

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
              G + LH AA++   +++  LL  GA  +E +SDG T +AI +R+
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 373

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 236 YALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARAS 295
             LH AA     +V + +L  D A  N     G T LHVA   N  +++  LL +G    
Sbjct: 134 TPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192

Query: 296 ETTSDGQTAVAICRRMTRRKDY 317
               +G T + I  +  + +  
Sbjct: 193 SPAWNGYTPLHIAAKQNQVEVA 214

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 2/128 (1%)

Query: 185 VKSNQESEANIAEVDPM-HAKIVRRIHKALHSDDVELLKLLLDVSNVTLDDAYALHYAAA 243
           VK       +        +  +     +        LL+     +  ++     LH AA 
Sbjct: 181 VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 240

Query: 244 CCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
               ++   +     A  NL +  G T LH+ A+     V   L+  G     TT  G T
Sbjct: 241 EGHAEMVALL-LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

Query: 304 AVAICRRM 311
            + +    
Sbjct: 300 PLHVASHY 307

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 36/136 (26%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDS------ 258
           +H A  +   E+ K LL     V+    DD   LH AA      + K +L  ++      
Sbjct: 37  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 96

Query: 259 --------------------------AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
                                     A       +G T LHVAA+  +  V   LL + A
Sbjct: 97  TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 156

Query: 293 RASETTSDGQTAVAIC 308
             +    +G T + + 
Sbjct: 157 HPNAAGKNGLTPLHVA 172

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLL 288
            LH AA      +   +L    A  N   + G T L +A R     V   +L
Sbjct: 333 PLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYISV-TDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 42/272 (15%), Positives = 91/272 (33%), Gaps = 12/272 (4%)

Query: 103 LMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSN 162
           L  A+          LL++        A      P+ +AA    +  + +   +  + + 
Sbjct: 70  LHCAARIGHTNMVKLLLENN--ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 127

Query: 163 LDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLK 222
           +               +++   +   +++  N A  + +       +H A+H ++++++K
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP-----LHVAVHHNNLDIVK 182

Query: 223 LLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARR 278
           LLL       +   +    LH AA     +V + +L    +  N +  +G T LH+AA+ 
Sbjct: 183 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQE 241

Query: 279 NEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKDRLCIDVLE 338
              E++  LLSK A  +     G T + +  +           K G   +          
Sbjct: 242 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 301

Query: 339 REMRRNSMSRFPPKKFLDCDWSDAYLLENGTP 370
                    +            +A      +P
Sbjct: 302 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 333

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.7 bits (130), Expect = 5e-09
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 226 DVSNVTLDDAYALHYAAACCSPKVFKEVLNMD--SAGLNLKDARGRTVLHVAARRNEPEV 283
            + + T +     +         + + +      +  LN +D+ G T L++AAR     +
Sbjct: 215 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 274

Query: 284 MVTLLSKGARASETTSDGQTA 304
           +  LL  GA        G   
Sbjct: 275 VDALLDYGADPFIANKSGLRP 295

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 27/206 (13%), Positives = 66/206 (32%), Gaps = 15/206 (7%)

Query: 173 PDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVSNVTL 232
            D +SS +K ++   +     N  ++     K+   + + L  +  E+   L + S+   
Sbjct: 12  SDFLSSPLKIMKALPSPVVNDNEQKM-----KLEAFLQRLLFPEIQEMPTSLNNDSSNRN 66

Query: 233 DDAYALHYAA--ACCSPKVFKEVLNMDSAGLNL---KDARGRTVLHVAARRNEPEVMVTL 287
            +  + +           + +      +  LNL    D  G T LH        E++  L
Sbjct: 67  SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL 126

Query: 288 LSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE-----TNKDRLCIDVLEREMR 342
           +  G+      + G++ +    +     D                 +D +   +L   + 
Sbjct: 127 VKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII 186

Query: 343 RNSMSRFPPKKFLDCDWSDAYLLENG 368
            + M+          D    ++++  
Sbjct: 187 TSGMTGCSAAAKYYLDILMGWIVKKQ 212

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 16/153 (10%), Positives = 40/153 (26%), Gaps = 4/153 (2%)

Query: 163 LDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLK 222
           +     E      +S+   SL   S +E+            ++ + +       +    +
Sbjct: 19  IPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQ 78

Query: 223 LLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAG--LNLKDARGRTVLHVAARRNE 280
           L  D     +        AA          +  + ++   + +  A       +AA    
Sbjct: 79  LWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 138

Query: 281 PEVMVTLLSKGA--RASETTSDGQTAVAICRRM 311
             V+  L         +   ++   A  +    
Sbjct: 139 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN 171

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 10/149 (6%)

Query: 174 DEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAL---HSDDVELLKLLL----D 226
           ++V   +       N+ ++   ++      K       A     S  ++ L LLL     
Sbjct: 59  EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI 118

Query: 227 VSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDAR--GRTVLHVAARRNEPEVM 284
           V  +  ++  A   AA      V   +  +      +   +        +AA      V+
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELA-PTEIMAMIQAENYHAFRLAAENGHLHVL 177

Query: 285 VTLLSKGARASETTSDGQTAVAICRRMTR 313
             L       +      +   A       
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFRWAAVG 206

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 19/79 (24%), Positives = 36/79 (45%)

Query: 226 DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMV 285
              +       ALHYAA   +  + K ++    +  + +D  G+T + +AA+    EV++
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 286 TLLSKGARASETTSDGQTA 304
            L+ +GA      +   TA
Sbjct: 239 YLIQQGASVEAVDATDHTA 257

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK 290
            +  AA     +V   ++    A +   DA   T   +A   N   + V +  +
Sbjct: 224 PIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNI-VDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 238 LHYAAACCSPKVFKEVLNMDSAGLNLKDAR-GRTVLHVAARRNEPEVMVTLL-------- 288
           +             E +      +N+ D R  RTVLH  A  +  E    L+        
Sbjct: 4   IKLHTEAAGSYAITEPI--TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 289 SKGARASETTSDGQTAVAICRRMTRRKDY 317
           + GA  +    D  T + +     RR+  
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLV 90

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 18/56 (32%), Positives = 24/56 (42%)

Query: 236 YALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG 291
           Y LH A         +E+L+   + L  KD  GR  LH +      E+   LLSK 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARA 294
            L +A A         ++    A  +L D +G     VA      +V    L+    A
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK-GARAS 295
            LH AA+  S K+ + +  +  + +N +D +G T L  A      +  V L+ K GA   
Sbjct: 141 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 200

Query: 296 ETTSDGQTAVAICRR 310
              + G  A  +   
Sbjct: 201 LVDNKGAKAEDVALN 215

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 233 DDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
               ALH AAA    +V K  L      +N+KD  G T LH AA   + E    L+    
Sbjct: 198 SGGTALHVAAAKGYTEVLKL-LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

Query: 293 RASETTSDGQTAVAICRR 310
                   GQTA  +   
Sbjct: 257 DMEAVNKVGQTAFDVADE 274

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 30/140 (21%), Positives = 42/140 (30%), Gaps = 37/140 (26%)

Query: 209 IHKALHSDDVELLKLLL--DVSNVTLDDAY---ALHYAAA-------------------- 243
           +    +S  +E LK  +  D S  T  D     ALH+A +                    
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 244 ------------CCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG 291
                               + L    A +N  +  G T LH AA +N  E+ V LL  G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 292 ARASETTSDGQTAVAICRRM 311
           A          TA+      
Sbjct: 127 ANPDAKDHYEATAMHRAAAK 146

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 209 IHKALHSDDVELLKLLL----DVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLK 264
           +H A   +  E+  +LL    +       +A A+H AA          +L    A  N++
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAA-AKGNLKMIHILLYYKASTNIQ 165

Query: 265 DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
           D  G T LH+A      E    L+S+GA       + +T + + + 
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG 211

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 239 HYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETT 298
           H A    +  V + +L    A    +   GRT L  A  R  P +   L + GA   E  
Sbjct: 197 HLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE-- 253

Query: 299 SDG 301
            DG
Sbjct: 254 -DG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 230 VTLDDAYALHYAAACCSPKVFKEVLNM--DSAGLNLKDARGRTVLHVAARRNEPEVM 284
           VT D   ALH A           +L        L+L++  G+T LH+AA   E   +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 3/47 (6%)

Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARAS---ETTSDGQTA 304
                  G T LH+A        +  LL   A           GQTA
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTA 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 3e-04
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 237 ALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
           ALH A    +P +   +L    A +N    +G +   +   R    +   L     
Sbjct: 148 ALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 19/85 (22%), Positives = 34/85 (40%)

Query: 220 LLKLLLDVSNVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRN 279
           LL+   D+  V +    +    A   +     ++L    A +N +   G + LH A+ R 
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 188

Query: 280 EPEVMVTLLSKGARASETTSDGQTA 304
              ++ TL+  GA +S       T 
Sbjct: 189 LLPLVRTLVRSGADSSLKNCHNDTP 213

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 239 HYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG 291
           H AA     +V + ++   ++ +  ++ +G T   +A      EV+  + + G
Sbjct: 104 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	415
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.09
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.08

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-36  Score=264.24  Aligned_cols=212  Identities=17%  Similarity=0.109  Sum_probs=187.3

Q ss_pred             HHHHHHHHcCcHHHHH-HHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 014994          102 ELMYASAALQMKDRVF-LLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEI  180 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~-~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~  180 (415)
                      ++|+.++..|+.+.++ +|...+..++.+  |.+|+||||+|+..|+.++++++++.  .......+..+.++++.+...
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~--D~~G~TpLh~Aa~~g~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLATRT--DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGGGCC--CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCSCCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcCcCc--CCCCCCHHHHHHHhhhhccccccccc--ccccccccccccccccccccc
Confidence            4588899999988886 555666777776  99999999999999999999999998  667777788899999999888


Q ss_pred             Hhhhhh-hccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHh
Q 014994          181 KSLRVK-SNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLN  255 (415)
Q Consensus       181 ~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~  255 (415)
                      ++..+. .++..+++   ++..|.+|.||||+|+..|+.+++++|+++| ++   +..|.||||+|+..++.++++.|+.
T Consensus        81 ~~~~i~~~Ll~~~~d---~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~  157 (223)
T d1uoha_          81 GRDEIVKALLGKGAQ---VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY  157 (223)
T ss_dssp             TCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccchhHHHhccCce---eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcc
Confidence            777663 34465644   5667789999999999999999999999999 55   5788999999999999999999988


Q ss_pred             cCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHh
Q 014994          256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK  322 (415)
Q Consensus       256 ~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~  322 (415)
                      . |+++|.+|.+|+||||+|+..|+.++|++||++|||++.+|.+|+||||+|. .|+.++++.|++
T Consensus       158 ~-~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         158 Y-KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             T-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             c-cceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            5 8999999999999999999999999999999999999999999999999984 688999988874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-35  Score=283.85  Aligned_cols=219  Identities=16%  Similarity=0.123  Sum_probs=174.5

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIK  181 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~  181 (415)
                      ||||.||..|+.++|++|++.|+++|..  |..|.||||+|+..|+.+++++|++.  +++++..+..|.|||++|+..+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~--gadi~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHT
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcC
Confidence            7999999999999999999999999986  89999999999999999999999998  7789999999999999986544


Q ss_pred             hhhhhh-------------------------------------------------------------------ccccccC
Q 014994          182 SLRVKS-------------------------------------------------------------------NQESEAN  194 (415)
Q Consensus       182 ~~~~~~-------------------------------------------------------------------~~~~~~~  194 (415)
                      ...+..                                                                   ++..|+ 
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~-  156 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA-  156 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC-
Confidence            332211                                                                   111111 


Q ss_pred             ccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC-------------------------------------------
Q 014994          195 IAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV-------------------------------------------  230 (415)
Q Consensus       195 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~-------------------------------------------  230 (415)
                        .++..+.+|.+|||+|+..|+.+++++|+.+| ++                                           
T Consensus       157 --~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~  234 (408)
T d1n11a_         157 --HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP  234 (408)
T ss_dssp             --CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             --CCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCH
Confidence              24455567778888888888888888877664 11                                           


Q ss_pred             --------------------------CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHH
Q 014994          231 --------------------------TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVM  284 (415)
Q Consensus       231 --------------------------~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v  284 (415)
                                                +..|.|||+.|+..++.+++++|++. |++++..+..+.||||.|+..++.+++
T Consensus       235 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             HHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhhcccCcceee
Confidence                                      23456788998888888888888875 788888888888888888888888888


Q ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          285 VTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       285 ~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      +++++.|+++|.+|.+|.||||+|++.|+.++|++|+++|++++
T Consensus       314 ~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n  357 (408)
T d1n11a_         314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  357 (408)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             eeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            88888888888888888888888888888888888888887775

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-35  Score=259.54  Aligned_cols=218  Identities=16%  Similarity=0.102  Sum_probs=187.5

Q ss_pred             HHHHHHHHcCcHHHHHHHHHh-CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCC---ccccCCCChHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHW-LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLD---NFCLERELPDEVS  177 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~---~~~~~g~tpl~~a  177 (415)
                      +|||+|+..|+.++++.|++. +.+++.+  |.+|.||||+|+..|+.+++++|++.  +++++   ..+..|.+|++++
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~--d~~G~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQK--DQDGRIPLHWSVSFQAHEITSFLLSK--MENVNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTT--CTTCCGGGCCCTTSCCHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCccccc--CCCCCCHHHHHHHcCCccccchhhhh--hcccccccccccccccccccc
Confidence            589999999999999977775 5677775  89999999999999999999999998  55655   4577899999999


Q ss_pred             HHHHhhhhhhc-cccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC----CCCCCCchHHHHHHHCCCHHHHHH
Q 014994          178 SEIKSLRVKSN-QESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS----NVTLDDAYALHYAAACCSPKVFKE  252 (415)
Q Consensus       178 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~g~tpL~~A~~~g~~~~v~~  252 (415)
                      .......+... ...+.. ......+..+.|+++.++..++.+++++|+..|    ..|..|+||||+|+..|+.++++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~  156 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL  156 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSC-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccc
Confidence            88776655332 333333 233446678999999999999999999999999    346789999999999999999999


Q ss_pred             HHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS-KGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       253 Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      |+...+.++|.+|.+|+||||+|+..|+.++|++||+ .|+|++.+|.+|+||||+|+.   ..++++|+++|+++
T Consensus       157 Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d~  229 (229)
T d1ixva_         157 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVDA  229 (229)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCCC
T ss_pred             ccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCCC
Confidence            9987558999999999999999999999999999997 599999999999999999984   47899999999863

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-35  Score=262.06  Aligned_cols=223  Identities=13%  Similarity=0.006  Sum_probs=167.7

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCC---cccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHH
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLG---MVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDE  175 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~  175 (415)
                      .+.||||+|+..|+.+++++|++.|++   ++.+  +..|.||||+|+..|+.+++++|++.  +++++..|..|.|||+
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~--~~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ--NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHTALH   83 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCc--CCCCCCccchHHhhcccccccccccc--cccccccccccchhhh
Confidence            367899999999999999999999988   4444  78999999999999999999999998  7899999999999999


Q ss_pred             HHHHHHhhhhhhc-cccccCccC-------CCCCCccccHHHHHHHhc---CCHHHHHHHH-HCC----CCCCCCchHHH
Q 014994          176 VSSEIKSLRVKSN-QESEANIAE-------VDPMHAKIVRRIHKALHS---DDVELLKLLL-DVS----NVTLDDAYALH  239 (415)
Q Consensus       176 ~a~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll-~~g----~~~~~g~tpL~  239 (415)
                      +|+..+...+... +..+.....       ....+..+.+.+..+...   ........+. ..+    ..|..|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            9976665554222 222111100       000001111111111111   1111111111 111    24678999999


Q ss_pred             HHHHCCCHHHHHHHHhcCCCCcccc-CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHH
Q 014994          240 YAAACCSPKVFKEVLNMDSAGLNLK-DARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYI  318 (415)
Q Consensus       240 ~A~~~g~~~~v~~Ll~~~gadvn~~-d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~  318 (415)
                      +|+..|+.+++++|++. |++++.. +..|.||||+|+..|+.+++++|+++|+|+|.+|.+|.||||+|+..++.++++
T Consensus       164 ~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~  242 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (255)
T ss_dssp             HHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             ccccccccccccchhcc-cccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            99999999999999997 7888764 678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCC
Q 014994          319 EASKQGQE  326 (415)
Q Consensus       319 ~l~~~g~~  326 (415)
                      +|+++|+.
T Consensus       243 ~Ll~~Ga~  250 (255)
T d1oy3d_         243 LLRAHGAP  250 (255)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCC
Confidence            99999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.8e-34  Score=256.47  Aligned_cols=195  Identities=15%  Similarity=0.041  Sum_probs=149.8

Q ss_pred             ccCCChhHHHHHHHcCcHHHHHHHHHhhcCC-CCCccccCCCChHHHHHHHHhhhhh-hccccccCccCCCCCCccccHH
Q 014994          131 LVEDVLPILVAAFHCQLNMLRSYCIQRIAGS-NLDNFCLERELPDEVSSEIKSLRVK-SNQESEANIAEVDPMHAKIVRR  208 (415)
Q Consensus       131 ~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~-~~~~~~~~g~tpl~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~  208 (415)
                      .+++|.||||+|+.+|+.+++++|++.++.. .++..+..|.||||+|+..++..+. .+++.|+++   +.+|.+|.||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i---~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc---cccccccchh
Confidence            3789999999999999999999999985432 2677889999999999998888774 445777654   4566799999


Q ss_pred             HHHHHhcCCHHHHHHHHHCC-CCCCCC-------------c---hHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChH
Q 014994          209 IHKALHSDDVELLKLLLDVS-NVTLDD-------------A---YALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTV  271 (415)
Q Consensus       209 L~~A~~~g~~~~v~~Ll~~g-~~~~~g-------------~---tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~Tp  271 (415)
                      ||+|+..|+.+++++|++.+ ..+...             .   .++..............+....+.+++.+|..|+||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            99999999999999999887 211111             1   111111111222223333333478899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCcchHHHHHhcCCCcc
Q 014994          272 LHVAARRNEPEVMVTLLSKGARASET-TSDGQTAVAICRRMTRRKDYIEASKQGQETN  328 (415)
Q Consensus       272 Lh~A~~~~~~~~v~~Ll~~Gadin~~-d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~  328 (415)
                      ||+|+..++.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++|++++
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT  219 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999865 5789999999999999999999999998885

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.4e-34  Score=261.34  Aligned_cols=220  Identities=15%  Similarity=0.131  Sum_probs=189.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHH--------HHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCC
Q 014994           99 YVIELMYASAALQMKDRVFLL--------QHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLER  170 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g  170 (415)
                      .+.||||+|+..|+.++|++|        ++.|+|+|.+  |.+|.||||+|+..|+.+++++|++.  +++++..+..|
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~--d~~G~TpLh~A~~~g~~~iv~~Ll~~--Gad~n~~~~~g  107 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKSE  107 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc--CCCCCeeecccccccccccccccccc--ccccccccccc
Confidence            367999999999999988765        5679999997  99999999999999999999999998  78899999999


Q ss_pred             CChHHHHHHHHhhhhhhcc-ccccCccCCCCCCccccHHHHHHHhcCCHH---HHHHHHHCC------------CCCCCC
Q 014994          171 ELPDEVSSEIKSLRVKSNQ-ESEANIAEVDPMHAKIVRRIHKALHSDDVE---LLKLLLDVS------------NVTLDD  234 (415)
Q Consensus       171 ~tpl~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~---~v~~Ll~~g------------~~~~~g  234 (415)
                      .||+++|.......+...+ ..+.....++..+..+.++.+.+...+..+   .+..+.+..            ..+..|
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            9999999887766553332 333334556677788999999998877543   444555443            124578


Q ss_pred             chHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCc
Q 014994          235 AYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRR  314 (415)
Q Consensus       235 ~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~  314 (415)
                      +||||+++..++.+++..++...|.+++.+|..|+||||+|+..|+.++|++|+++|||+|.+|.+|+||||+|+..|+.
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999999988777999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHh
Q 014994          315 KDYIEASK  322 (415)
Q Consensus       315 ~~v~~l~~  322 (415)
                      ++|++|++
T Consensus       268 ~iv~lL~~  275 (277)
T d2fo1e1         268 NIVDIFDR  275 (277)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=7.3e-34  Score=261.38  Aligned_cols=212  Identities=19%  Similarity=0.117  Sum_probs=186.4

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      ..|+|+.|+..|+.++|++|+++|+++|.+  |.+|.||||+|+.+|+.+++++|++.  +.+.+..+..+.+||+.+..
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~--d~~G~T~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCcc--CCCCCcHHHHHHhcCCceeeeeeccc--cccccccccccccccccccc
Confidence            568999999999999999999999999987  99999999999999999999999998  66788889999999999988


Q ss_pred             HHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC------------------------------
Q 014994          180 IKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS------------------------------  228 (415)
Q Consensus       180 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------------------------------  228 (415)
                      .+...... ++..|+.   .+..+..+.+++++|+..++.+.++.++...                              
T Consensus       116 ~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (291)
T d1s70b_         116 CGYLDIAEYLISQGAH---VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (291)
T ss_dssp             HTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ccccchhhcccccCcc---cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccc
Confidence            88777633 3355544   3445678999999999999999999888532                              


Q ss_pred             -CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 014994          229 -NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI  307 (415)
Q Consensus       229 -~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~  307 (415)
                       ..+..|.||||+|+..|+.++++.|+.. |+|+|.++..|+||||+|+..|+.++|++||++|||+|.+|..|+||||+
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~  271 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV  271 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTS
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccc-eecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence             1246789999999999999999999985 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcchHHHHHhc
Q 014994          308 CRRMTRRKDYIEASKQ  323 (415)
Q Consensus       308 A~~~~~~~~v~~l~~~  323 (415)
                      |++    +++++|.+.
T Consensus       272 A~e----~~~~~L~~~  283 (291)
T d1s70b_         272 ADE----DILGYLEEL  283 (291)
T ss_dssp             CCS----GGGHHHHHH
T ss_pred             HHH----HHHHHHHHH
Confidence            975    566666543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-32  Score=247.60  Aligned_cols=227  Identities=19%  Similarity=0.139  Sum_probs=177.0

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      ..++||.|+..|+.++|++|+++|+++|.+ .+..|.||||+|+..|+.+++++|++.  +...+..+..+.+|.+.+..
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~-~~~~g~tpL~~A~~~~~~eiv~~L~~~--~~~~~~~~~~~~~~~~~~~~   81 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAAI   81 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCCCHHHHHHHcCCHHHhhhhccc--cccccccccccchhhHHHhh
Confidence            357899999999999999999999999875 356799999999999999999999998  44555566666777666633


Q ss_pred             HHhhhhh----------------------------------hccccccCccC-------CCCCCccccHHHHHHHhcCCH
Q 014994          180 IKSLRVK----------------------------------SNQESEANIAE-------VDPMHAKIVRRIHKALHSDDV  218 (415)
Q Consensus       180 ~~~~~~~----------------------------------~~~~~~~~~~~-------~~~~~~~g~t~L~~A~~~g~~  218 (415)
                      .......                                  .......+...       .+..+..|.||||+|+..|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             cCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence            2222110                                  00010001000       112334578899999999999


Q ss_pred             HHHHHHHHCC--CC---CCCCchHHHHHHHCC----CHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 014994          219 ELLKLLLDVS--NV---TLDDAYALHYAAACC----SPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS  289 (415)
Q Consensus       219 ~~v~~Ll~~g--~~---~~~g~tpL~~A~~~g----~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~  289 (415)
                      +++++|+++.  ++   +..|.++++.+...+    ...++++|++. |+++|.+|..|.||||+|+..|+.++|++||+
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~-ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~  240 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC-CCCCCccCCCCCCccchhhhcCcHHHHHHHHH
Confidence            9999999764  44   455666666554432    34678888885 89999999999999999999999999999998


Q ss_pred             C-CCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcccc
Q 014994          290 K-GARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKD  330 (415)
Q Consensus       290 ~-Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~~  330 (415)
                      . |+|+|.+|.+|.||||+|+..|+.++|++|+++|++++..
T Consensus       241 ~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         241 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             SSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             cCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            5 9999999999999999999999999999999999998754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.2e-31  Score=234.17  Aligned_cols=203  Identities=13%  Similarity=0.025  Sum_probs=175.8

Q ss_pred             HHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccc
Q 014994          113 KDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESE  192 (415)
Q Consensus       113 ~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~  192 (415)
                      .++|++|+++|+++|.+ .|.+|.||||+||..|+.+++++|++.  +.+++..+..+.++++.+...............
T Consensus         2 ~~~v~~Ll~~g~din~~-~d~~G~t~L~~A~~~g~~e~v~~Ll~~--g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNAT-MDKTGETSLHLAARFARADAAKRLLDA--GADANSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcC-cCCCCCCHHHHHHHcCCHHHHHHHHhh--ccccccccccccccccccccccccccccccccc
Confidence            68999999999999873 388999999999999999999999998  778999999999999999765544432222111


Q ss_pred             cCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCC
Q 014994          193 ANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARG  268 (415)
Q Consensus       193 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g  268 (415)
                       ...........|.++.+.+.........+.|+..+ +   .+..|+|||++|+..|...++..++.. ++++|..|..|
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g  156 (209)
T d1ot8a_          79 -RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKD  156 (209)
T ss_dssp             -TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTC
T ss_pred             -cccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc-ccccccccccc
Confidence             11122224456889999999999999999999998 4   467899999999999999999999986 89999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHH
Q 014994          269 RTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEA  320 (415)
Q Consensus       269 ~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l  320 (415)
                      .||||+|+..|+.++|++||++|||++.+|..|+||||+|+..|+.++|++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-31  Score=235.58  Aligned_cols=214  Identities=15%  Similarity=0.064  Sum_probs=182.8

Q ss_pred             hHHHHHHHHHcCcHHHHHHHH----HhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHH
Q 014994          100 VIELMYASAALQMKDRVFLLQ----HWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDE  175 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~  175 (415)
                      |.||||+|+..|+.++++.|+    +.|++++.+  |.+|.||||+|+..|+.+++++|++.  +++.+.....+.++++
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~--d~~g~TpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTAAH   78 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCcc--CCCCCccceehhcccccccccccccc--cccccccccccccccc
Confidence            678999999999999998776    488999986  89999999999999999999999998  7788888999999999


Q ss_pred             HHHHHHhhhhhhcc--ccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C----CCCCCchHHHHHHHCCCHH
Q 014994          176 VSSEIKSLRVKSNQ--ESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N----VTLDDAYALHYAAACCSPK  248 (415)
Q Consensus       176 ~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~----~~~~g~tpL~~A~~~g~~~  248 (415)
                      .|............  .........+.......++|+.+.........+.|.... +    ....+.+||++|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            99665554432211  111112233344567789999999999999999998876 2    2457889999999999999


Q ss_pred             HHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHH
Q 014994          249 VFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYI  318 (415)
Q Consensus       249 ~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~  318 (415)
                      +++.++.. |.+++.+|..|.||||+|+..|+.+++++|+++|||+|.+|.+|+||||+|+..|+.++|+
T Consensus       159 ~~~~~~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         159 MVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhh-ccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999986 8999999999999999999999999999999999999999999999999999988877663

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.1e-32  Score=237.49  Aligned_cols=186  Identities=15%  Similarity=0.127  Sum_probs=147.4

Q ss_pred             HHHHHHHHcCcH----HHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994          102 ELMYASAALQMK----DRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus       102 ~~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ||||+|+..|..    ++++++...|+++|.+  |.+|.||||+|+..|+.+++++|++.  +                 
T Consensus         4 t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~--d~~g~TpLh~A~~~~~~~iv~~L~~~--g-----------------   62 (221)
T d1iknd_           4 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ--NNLQQTPLHLAVITNQPEIAEALLGA--G-----------------   62 (221)
T ss_dssp             CTTHHHHHTTCSSSSSCCCC-----CCCCCCC--CTTCCCHHHHHHHTTCHHHHHCCCSC--C-----------------
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCCCCcccC--CCCCCccccccccccccccccccccc--c-----------------
Confidence            557777776664    3344555666666665  66677777777777777666666654  2                 


Q ss_pred             HHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C---------CCCCCchHHHHHHHCCCH
Q 014994          178 SEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N---------VTLDDAYALHYAAACCSP  247 (415)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~---------~~~~g~tpL~~A~~~g~~  247 (415)
                                     ++   ++..|..|.||||+|+..|+.++++.|+..+ .         ....|.||||+|+..|+.
T Consensus        63 ---------------~d---~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~  124 (221)
T d1iknd_          63 ---------------CD---PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL  124 (221)
T ss_dssp             ---------------CC---SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH
T ss_pred             ---------------cc---ccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCCh
Confidence                           22   3334568899999999999999999999987 2         134688999999999999


Q ss_pred             HHHHHHHhcCCCCccccC-CCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCC
Q 014994          248 KVFKEVLNMDSAGLNLKD-ARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQE  326 (415)
Q Consensus       248 ~~v~~Ll~~~gadvn~~d-~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~  326 (415)
                      +++.+|+.. |++++..+ .+|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.++++.|.+.+.+
T Consensus       125 ~~~~~l~~~-~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         125 GIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             hheeeeccc-CcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999987 89988775 5799999999999999999999999999999999999999999999999999999988765


Q ss_pred             c
Q 014994          327 T  327 (415)
Q Consensus       327 ~  327 (415)
                      .
T Consensus       204 ~  204 (221)
T d1iknd_         204 N  204 (221)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.7e-30  Score=224.73  Aligned_cols=190  Identities=16%  Similarity=0.066  Sum_probs=168.3

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhcc-ccccCccCCCCCCccccHHHHHHH
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQ-ESEANIAEVDPMHAKIVRRIHKAL  213 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~L~~A~  213 (415)
                      +.++|+.+|..|+.+.|+.++... +..++.+|..|+||||+|+..++..+...+ ..+....   ..+..+.++++.++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~---~~~~~~~~~~~~~~   78 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAA   78 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC---CCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc---cccccccccccccc
Confidence            358899999999988887777643 567889999999999999998888774433 4443333   34457899999999


Q ss_pred             hcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 014994          214 HSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS  289 (415)
Q Consensus       214 ~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~  289 (415)
                      ..|+.+++++|+++| +   .|..|.||||+|+..|+.+++++|++. |+|++.+|..|.||||+|+..++.+++++|++
T Consensus        79 ~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~  157 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLY  157 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhcc
Confidence            999999999999999 4   467899999999999999999999986 99999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCccc
Q 014994          290 KGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNK  329 (415)
Q Consensus       290 ~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~  329 (415)
                      .|++++.+|.+|+||||+|+..|+.++|+.|++.|++++.
T Consensus       158 ~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         158 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCC
Confidence            9999999999999999999999999999999999998864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.2e-29  Score=221.06  Aligned_cols=193  Identities=17%  Similarity=0.045  Sum_probs=174.6

Q ss_pred             hhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHh
Q 014994          136 LPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALH  214 (415)
Q Consensus       136 ~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  214 (415)
                      +||||+||..|+.++++.|++.. +.+++.+|.+|.||||+|+..+...+ ..+++.|+++...+..+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            48999999999999999999863 45889999999999999999888876 45558888888888888999999999999


Q ss_pred             cCCHHHHHHHHHCC-C-----CCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014994          215 SDDVELLKLLLDVS-N-----VTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLL  288 (415)
Q Consensus       215 ~g~~~~v~~Ll~~g-~-----~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll  288 (415)
                      .+..++++.++..+ .     .+..+.|||++++..++.++++.|+.. |.+++.+|..|+||||+|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhccccccccccc
Confidence            99999999999988 2     346788999999999999999999986 8999999999999999999999999999999


Q ss_pred             hCC-CCCCCCCCCCCcHHHHHHHcCCcchHHHHHh-cCCCcccc
Q 014994          289 SKG-ARASETTSDGQTAVAICRRMTRRKDYIEASK-QGQETNKD  330 (415)
Q Consensus       289 ~~G-adin~~d~~g~tpL~~A~~~~~~~~v~~l~~-~g~~~~~~  330 (415)
                      +.| .++|.+|.+|+||||+|+..|+.++++.|++ .|++++..
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~  202 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV  202 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCC
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCc
Confidence            997 7899999999999999999999999999996 59887643

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=5e-28  Score=222.00  Aligned_cols=193  Identities=16%  Similarity=0.103  Sum_probs=169.2

Q ss_pred             CCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhh-hhccccccCccCCCCCCccccHHHHH
Q 014994          133 EDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHK  211 (415)
Q Consensus       133 ~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~  211 (415)
                      .++.|||+.||..|+.++|++|++.  |+++|..|.+|.||||+|+..++..+ ..+++.|++..   ..+..+.|||++
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~---~~~~~~~~~L~~  112 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN---QPDNEGWIPLHA  112 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccc---cccccccccccc
Confidence            3567999999999999999999998  78999999999999999998888877 44446665543   445689999999


Q ss_pred             HHhcCCHHHHHHHHHCC----CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCC--------------------------c
Q 014994          212 ALHSDDVELLKLLLDVS----NVTLDDAYALHYAAACCSPKVFKEVLNMDSAG--------------------------L  261 (415)
Q Consensus       212 A~~~g~~~~v~~Ll~~g----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gad--------------------------v  261 (415)
                      |+..|+.++++.|+++|    ..|..+.+|+++|+..++.+.+..++...|.+                          .
T Consensus       113 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccc
Confidence            99999999999999998    35678999999999999988888887543333                          3


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcccc
Q 014994          262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKD  330 (415)
Q Consensus       262 n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~~  330 (415)
                      ...+..|.||||+|+..|+.+++++|+++|+|+|.++.+|+||||+|+..|+.++|++|+++|++++..
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            456788999999999999999999999999999999999999999999999999999999999987643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.8e-27  Score=193.10  Aligned_cols=147  Identities=21%  Similarity=0.113  Sum_probs=132.5

Q ss_pred             ChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHh
Q 014994          135 VLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALH  214 (415)
Q Consensus       135 g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  214 (415)
                      ..||||.|++.|+.++|++|++.++  +++                                    .|..|+||||+|+.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga--~~~------------------------------------~~~~g~t~L~~a~~   43 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGA--PFT------------------------------------TDWLGTSPLHLAAQ   43 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC--CCC------------------------------------CCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCC--Ccc------------------------------------cccCCCcccccccc
Confidence            4599999999999999999999732  221                                    34578999999999


Q ss_pred             cCCHHHHHHHHHCC----CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 014994          215 SDDVELLKLLLDVS----NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK  290 (415)
Q Consensus       215 ~g~~~~v~~Ll~~g----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  290 (415)
                      .++.++++.++...    ..+..+.++++.++...+.+.++.++.. |++++.+|.+|+||||+|+..|+.++|++|+++
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~  122 (153)
T d1awcb_          44 YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKY  122 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeeccccc-CCccccccccCchHHHhhhhcchhheeeecccc
Confidence            99999999999887    2345678999999999999999999985 899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCcchHHHH
Q 014994          291 GARASETTSDGQTAVAICRRMTRRKDYIEA  320 (415)
Q Consensus       291 Gadin~~d~~g~tpL~~A~~~~~~~~v~~l  320 (415)
                      |+|++.+|.+|.||||+|+..|+.+++++|
T Consensus       123 gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         123 GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999999999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.2e-27  Score=194.37  Aligned_cols=150  Identities=17%  Similarity=0.131  Sum_probs=106.8

Q ss_pred             HHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHH
Q 014994          102 ELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIK  181 (415)
Q Consensus       102 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~  181 (415)
                      ++||+|+..|+.++|++|+++|++++.+  |.+|.||||+|+ .|+.+++++|++.  ++++                  
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~--d~~g~TpL~~A~-~~~~ei~~~Ll~~--~a~~------------------   59 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMK-LGNPEIARRLLLR--GANP------------------   59 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCC-SSCHHHHHHHHHT--TCCT------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCcc--CCcccccccccc-ccccccccccccc--cccc------------------
Confidence            5678888888888888887777777775  777778887665 6777777777775  3222                  


Q ss_pred             hhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHHHHhcC
Q 014994          182 SLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKEVLNMD  257 (415)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  257 (415)
                                       +..+..|.++|+.++..++.+.+++|++.+ +   .+..|.+|||+|+..++.++++.|++..
T Consensus        60 -----------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  122 (156)
T d1ihba_          60 -----------------DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  122 (156)
T ss_dssp             -----------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             -----------------ccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                             223445667777777777777777777776 2   2456777777777777777777777764


Q ss_pred             CCCccccCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 014994          258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG  291 (415)
Q Consensus       258 gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~G  291 (415)
                      +.+++.+|.+|+||||+|+..|+.++|++|+++|
T Consensus       123 ~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            4577777777777777777777777777777766

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=192.71  Aligned_cols=148  Identities=14%  Similarity=0.064  Sum_probs=131.8

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcC
Q 014994          137 PILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSD  216 (415)
Q Consensus       137 t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  216 (415)
                      +.|+.||..|+.++|+.|++.. +                                   ..++..|..|.||||+|+ .|
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~-~-----------------------------------~~~n~~d~~g~t~L~~A~-~~   46 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE-L-----------------------------------VHPDALNRFGKTALQVMM-FG   46 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT-C-----------------------------------CCTTCCCTTSCCHHHHSC-TT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC-C-----------------------------------CCCCccCCCCCccccccc-cc
Confidence            4599999999999999999852 2                                   234455678999999886 48


Q ss_pred             CHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 014994          217 DVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA  292 (415)
Q Consensus       217 ~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Ga  292 (415)
                      +.+++++|++++ ++   +..|.+||++++..++.++++.+++. |+++|.+|..|+||||+|+..|+.+++++|+ .|+
T Consensus        47 ~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~  124 (156)
T d1bd8a_          47 STAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AES  124 (156)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-ccccccccCCCCeeecccccccccccccccc-ccc
Confidence            899999999998 54   46789999999999999999999986 8999999999999999999999999999888 689


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCcchHHHHHhc
Q 014994          293 RASETTSDGQTAVAICRRMTRRKDYIEASKQ  323 (415)
Q Consensus       293 din~~d~~g~tpL~~A~~~~~~~~v~~l~~~  323 (415)
                      +++.+|.+|+||||+|+..|+.+++++|+++
T Consensus       125 ~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         125 DLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=193.10  Aligned_cols=149  Identities=19%  Similarity=0.168  Sum_probs=135.5

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcC
Q 014994          137 PILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSD  216 (415)
Q Consensus       137 t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  216 (415)
                      +|||+||..|+.++|++|++.  +.+++                                   .+|.+|.||||+|+ .|
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~--g~d~n-----------------------------------~~d~~g~TpL~~A~-~~   44 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN--NVNVN-----------------------------------AQNGFGRTALQVMK-LG   44 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS--CCCTT-----------------------------------CCCTTSCCHHHHCC-SS
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCcC-----------------------------------ccCCcccccccccc-cc
Confidence            899999999999999999997  53433                                   34567889998775 78


Q ss_pred             CHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 014994          217 DVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA  292 (415)
Q Consensus       217 ~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Ga  292 (415)
                      +.+++++|++.| ++   +..|.+||+.++..++...+..|+.. +.+++..|..|.+|||+|+..++.+++++|+++|+
T Consensus        45 ~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          45 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccccccccccccccccccccCcccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            999999999999 54   56789999999999999999999986 89999999999999999999999999999999986


Q ss_pred             -CCCCCCCCCCcHHHHHHHcCCcchHHHHHhcC
Q 014994          293 -RASETTSDGQTAVAICRRMTRRKDYIEASKQG  324 (415)
Q Consensus       293 -din~~d~~g~tpL~~A~~~~~~~~v~~l~~~g  324 (415)
                       +++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus       124 ~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         124 SNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence             89999999999999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-26  Score=206.27  Aligned_cols=196  Identities=18%  Similarity=0.071  Sum_probs=155.6

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHhCCCccccc-------------------------------ccCCChhHHHHHHHcCc
Q 014994           99 YVIELMYASAALQMKDRVFLLQHWLLGMVGKA-------------------------------LVEDVLPILVAAFHCQL  147 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------------------------~~~~g~t~L~~A~~~g~  147 (415)
                      .+.||||+|+..|+.+++++|++.+...+...                               .+..+.|+|+.|+..|+
T Consensus        38 ~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~  117 (285)
T d1wdya_          38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  117 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcc
Confidence            46789999999999999999999887654421                               13456778888888888


Q ss_pred             HHHHHHHHHhhcCCCCCcc----------ccCCCChHHHHHHHHhhhhhhcc--ccccCccCCCCCCccccHHHHHHHhc
Q 014994          148 NMLRSYCIQRIAGSNLDNF----------CLERELPDEVSSEIKSLRVKSNQ--ESEANIAEVDPMHAKIVRRIHKALHS  215 (415)
Q Consensus       148 ~~lv~~ll~~~~~~~~~~~----------~~~g~tpl~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~t~L~~A~~~  215 (415)
                      ..++...+..  ..+++..          ...|.||||+|+..+...+...+  ..|++   ++..+..|.++++.+...
T Consensus       118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---i~~~~~~~~~~~~~~~~~  192 (285)
T d1wdya_         118 VKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD---VNACDNMGRNALIHALLS  192 (285)
T ss_dssp             HHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC---TTCCCTTSCCHHHHHHHC
T ss_pred             hhhhhhhhhh--cccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCC---cccccCCCCccccccccc
Confidence            8888777776  3333322          23488999999888877663333  33444   455666787777665443


Q ss_pred             ----CCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          216 ----DDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       216 ----g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                          +..+++++|+++| ++   +..|.||||+|+..|+.++|++||+..|+|+|.+|.+|.||||+|++.|+.++|++|
T Consensus       193 ~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~L  272 (285)
T d1wdya_         193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                3457999999999 54   567999999999999999999999877999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCC
Q 014994          288 LSKGARASETTS  299 (415)
Q Consensus       288 l~~Gadin~~d~  299 (415)
                      |++|||+|.+|.
T Consensus       273 l~~GAd~n~~d~  284 (285)
T d1wdya_         273 CKRGASTDCGDL  284 (285)
T ss_dssp             HHHSSCSCCSSC
T ss_pred             HHCCCCCCcccC
Confidence            999999999873

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=185.79  Aligned_cols=146  Identities=13%  Similarity=0.056  Sum_probs=130.2

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHH
Q 014994          101 IELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEI  180 (415)
Q Consensus       101 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~  180 (415)
                      .|||+.|++.|+.++|++|+++|++++.   |..|.||||+|+..++.+++..++.....                    
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~~---~~~g~t~L~~a~~~~~~~~~~~~~~~~~~--------------------   59 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRAGVS--------------------   59 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTTTCC--------------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCccc---ccCCCcccccccccccccccccccccccc--------------------
Confidence            4899999999999999999999999875   89999999999999999999988875221                    


Q ss_pred             HhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC----CCCCCCchHHHHHHHCCCHHHHHHHHhc
Q 014994          181 KSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS----NVTLDDAYALHYAAACCSPKVFKEVLNM  256 (415)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  256 (415)
                                       ....+..+.++++.++...+.+++++++.+|    ..|..|+||||+|+..|+.+++++|++.
T Consensus        60 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~  122 (153)
T d1awcb_          60 -----------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY  122 (153)
T ss_dssp             -----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             -----------------ccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeecccc
Confidence                             1112345678999999999999999999998    3468999999999999999999999986


Q ss_pred             CCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       257 ~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                       |+|+|.+|.+|.||||+|+.+|+.+++++|
T Consensus       123 -gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         123 -GADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -ccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence             999999999999999999999999999976

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=1.4e-25  Score=203.72  Aligned_cols=189  Identities=12%  Similarity=0.021  Sum_probs=153.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhc-CCCCCccccCCCChHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIA-GSNLDNFCLERELPDEV  176 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~-~~~~~~~~~~g~tpl~~  176 (415)
                      ..+.||||+|+..|+.+++++|+++|++++.+  +.+|.|||++|+..++.+++..+..... ...++..+..+.++.+.
T Consensus        72 ~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~--~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  149 (277)
T d2fo1e1          72 CDENTPLMLAVLARRRRLVAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  149 (277)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCeeeccccccccccccccccccccccccc--cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHH
Confidence            35789999999999999999999999999987  8999999999999999998888776432 23566678888888887


Q ss_pred             HHHHHhhh--------hh-hccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHC-C----CCCCCCchHHHHHH
Q 014994          177 SSEIKSLR--------VK-SNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDV-S----NVTLDDAYALHYAA  242 (415)
Q Consensus       177 a~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g----~~~~~g~tpL~~A~  242 (415)
                      +.......        .. ............+..+..|.||||+++..++.+++++++.. +    ..|..|+||||+|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~  229 (277)
T d2fo1e1         150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA  229 (277)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred             HHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHH
Confidence            74322111        00 00011112233455667899999999999999999987654 4    34678999999999


Q ss_pred             HCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 014994          243 ACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS  289 (415)
Q Consensus       243 ~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~  289 (415)
                      ..|+.++|++|++. |+|+|.+|.+|+||||+|+.+|+.++|++|++
T Consensus       230 ~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         230 QEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999986 99999999999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=7.1e-28  Score=226.74  Aligned_cols=221  Identities=9%  Similarity=-0.098  Sum_probs=163.5

Q ss_pred             hhHHHHHHHHHcCcHHHHHH---HHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccc--cCCCCh
Q 014994           99 YVIELMYASAALQMKDRVFL---LQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFC--LERELP  173 (415)
Q Consensus        99 ~~~~~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~--~~g~tp  173 (415)
                      .+.|+|++|+..|+.+++++   |++.|+++|..  +.+|+||||+||.+|+.++|++|++.  +++++..+  .+|.||
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~--~~~g~taL~~Aa~~G~~~~v~~Ll~~--g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI--QAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAENYHA  164 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc--CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCccccccccCCCCh
Confidence            47899999999999887765   78999999996  89999999999999999999999998  66776655  468899


Q ss_pred             HHHHHHHHhhhhhh-ccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC----------CCCCchHHHHH
Q 014994          174 DEVSSEIKSLRVKS-NQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV----------TLDDAYALHYA  241 (415)
Q Consensus       174 l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~----------~~~g~tpL~~A  241 (415)
                      ||+|+..++..+.. +++.|++....+..+.++.||+|.|+..|+.++|++|++.| ++          ...+.++++.+
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  244 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR  244 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHH
Confidence            99998888887744 44666665555544556778888888899999999999887 22          12334566666


Q ss_pred             HHCCCHHHHHHHHhcC-CCCccccCC-------CCChHHHHHHHcCCHHHHHHHHhCCCC-----CCCCCCCCCcHHHHH
Q 014994          242 AACCSPKVFKEVLNMD-SAGLNLKDA-------RGRTVLHVAARRNEPEVMVTLLSKGAR-----ASETTSDGQTAVAIC  308 (415)
Q Consensus       242 ~~~g~~~~v~~Ll~~~-gadvn~~d~-------~g~TpLh~A~~~~~~~~v~~Ll~~Gad-----in~~d~~g~tpL~~A  308 (415)
                      ...+..+....+.... ....+..+.       .+.|+|+.|+..++.+++++|++.|+.     .+..+.+|+||||+|
T Consensus       245 ~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA  324 (346)
T d2ajaa1         245 HVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA  324 (346)
T ss_dssp             HHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHH
T ss_pred             hhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHH
Confidence            5554444433333210 111222221       245789999999999999999998763     455567899999999


Q ss_pred             HHcCCcchHHHHHhc
Q 014994          309 RRMTRRKDYIEASKQ  323 (415)
Q Consensus       309 ~~~~~~~~v~~l~~~  323 (415)
                      ++.|+.++|++|++.
T Consensus       325 ~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         325 LRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHTCTTHHHHHTTS
T ss_pred             HHcCcHHHHHHHhCC
Confidence            999999999999864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=185.38  Aligned_cols=148  Identities=19%  Similarity=0.159  Sum_probs=129.7

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHh-CCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          101 IELMYASAALQMKDRVFLLQHW-LLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       101 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      .+.|+.|+..|+.++|+.|++. +++++.+  |..|.||||+|+ .|+.+++++|++.  +.++                
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~--d~~g~t~L~~A~-~~~~~~v~~Ll~~--~~~~----------------   61 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDAL--NRFGKTALQVMM-FGSTAIALELLKQ--GASP----------------   61 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCC--CTTSCCHHHHSC-TTCHHHHHHHHHT--TCCT----------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCcc--CCCCCccccccc-ccccccccccccc--cccc----------------
Confidence            3569999999999999988875 7899886  899999999987 5889999999986  3222                


Q ss_pred             HHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHh
Q 014994          180 IKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLN  255 (415)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~  255 (415)
                                         +..+..|.+|++.++..++.++++++++.| ++   |..|+||||+|+..|+.+++++|+ 
T Consensus        62 -------------------~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-  121 (156)
T d1bd8a_          62 -------------------NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-  121 (156)
T ss_dssp             -------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-
T ss_pred             -------------------cccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-
Confidence                               234457889999999999999999999999 44   577999999999999999999777 


Q ss_pred             cCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhC
Q 014994          256 MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSK  290 (415)
Q Consensus       256 ~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~  290 (415)
                      . |++++.+|.+|+||||+|+..|+.+++++|++|
T Consensus       122 ~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         122 A-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             T-TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             c-cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            3 799999999999999999999999999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=6.2e-25  Score=191.05  Aligned_cols=183  Identities=16%  Similarity=0.072  Sum_probs=152.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ..+.||||+|+..|+.+++++|++.|++++.+  +..+.++++.++..++........... ..........+.++.+.+
T Consensus        21 ~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   97 (209)
T d1ot8a_          21 KTGETSLHLAARFARADAAKRLLDAGADANSQ--DNTGRTPLHAAVAADAMGVFQILLRNR-ATNLNARMHDGTTPLILA   97 (209)
T ss_dssp             HHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhhccccccc--ccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            45779999999999999999999999999986  899999999999999987776666543 334444566777888777


Q ss_pred             HHHHhhhh-hhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-C---CCCCCchHHHHHHHCCCHHHHHH
Q 014994          178 SEIKSLRV-KSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-N---VTLDDAYALHYAAACCSPKVFKE  252 (415)
Q Consensus       178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~---~~~~g~tpL~~A~~~g~~~~v~~  252 (415)
                      ........ ..+...++   .++..+..|.|||++|+..|..++++.|++.+ +   .|..|.||||+|+..|+.++|+.
T Consensus        98 ~~~~~~~~~~~L~~~~~---~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~  174 (209)
T d1ot8a_          98 ARLAIEGMVEDLITADA---DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA  174 (209)
T ss_dssp             HHTTCTTHHHHHHHTTC---CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccchhhhhhhhhhcc---cccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHH
Confidence            55444433 22234443   34556678999999999999999999999998 4   36789999999999999999999


Q ss_pred             HHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q 014994          253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTL  287 (415)
Q Consensus       253 Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~L  287 (415)
                      ||+. |+|+|.+|..|+||||+|+++|+.++|++|
T Consensus       175 Ll~~-gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         175 LLDN-FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9986 999999999999999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=7.9e-27  Score=184.34  Aligned_cols=103  Identities=27%  Similarity=0.296  Sum_probs=98.1

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCH
Q 014994          206 VRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEP  281 (415)
Q Consensus       206 ~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~  281 (415)
                      .|||++|+..|+.++|++|+++| ++   |..|+||||+|+..|+.+++++|+.. |+|+|.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCch
Confidence            48999999999999999999999 54   56899999999999999999999986 899999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 014994          282 EVMVTLLSKGARASETTSDGQTAVAICR  309 (415)
Q Consensus       282 ~~v~~Ll~~Gadin~~d~~g~tpL~~A~  309 (415)
                      ++|++|+++|+|++.+|.+|+||||+|.
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            9999999999999999999999999883

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.4e-26  Score=180.61  Aligned_cols=116  Identities=21%  Similarity=0.158  Sum_probs=108.0

Q ss_pred             ccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCC-hHHHHHHHcC
Q 014994          205 IVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGR-TVLHVAARRN  279 (415)
Q Consensus       205 g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~-TpLh~A~~~~  279 (415)
                      +.++||+|+..|+.++|++|+++| ++   |..|.||||+|+ .|+.+++++|++. |+++|.++..|. ||||+|+..|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccc-ccccccccccccccccccccccc
Confidence            568999999999999999999999 55   568999999775 7999999999986 899999999876 6999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHh
Q 014994          280 EPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK  322 (415)
Q Consensus       280 ~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~  322 (415)
                      +.+++++|+++|+|++.+|..|+||||+|+..|+.+++++|+.
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.8e-26  Score=212.95  Aligned_cols=187  Identities=14%  Similarity=-0.014  Sum_probs=127.2

Q ss_pred             HHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhh--------hh
Q 014994          114 DRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSL--------RV  185 (415)
Q Consensus       114 ~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~--------~~  185 (415)
                      ++...+...++++|.. .|.+|.||||+|+..|+.++|++|++.  +++++.+|..|+||||.|+...+.        .+
T Consensus        87 ~~~~~~~~~~~dvn~~-~D~~G~T~LH~Aa~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll  163 (301)
T d1sw6a_          87 EVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL  163 (301)
T ss_dssp             HHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             HHHhcCCccCCCcCcC-cCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCcCCcccccHHHHhhhcccchhhhhHHHHH
Confidence            3333444456788763 488999999999999999999999998  789999999999999999764321        11


Q ss_pred             hhccccccCccCCCCCCccccHHHHHHHhcCC----HH--------HHHHHHHCC-C----CCCCCchHHHHHHHCCCHH
Q 014994          186 KSNQESEANIAEVDPMHAKIVRRIHKALHSDD----VE--------LLKLLLDVS-N----VTLDDAYALHYAAACCSPK  248 (415)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~----~~--------~v~~Ll~~g-~----~~~~g~tpL~~A~~~g~~~  248 (415)
                      ..+.      ..++..|..|+||||+++..+.    ..        ++.+++..+ .    ....+.++++.+.......
T Consensus       164 ~~l~------~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (301)
T d1sw6a_         164 DYLY------PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS  237 (301)
T ss_dssp             HHHG------GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred             HHHh------hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHH
Confidence            1111      2234456789999999886543    23        334555555 1    1234456666655544333


Q ss_pred             HHHHHHh--cCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 014994          249 VFKEVLN--MDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR  309 (415)
Q Consensus       249 ~v~~Ll~--~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~  309 (415)
                      .+..+..  ..+..+|.+|.+|+||||+|++.|+.++|++||++|||++.+|..|+|||++|+
T Consensus       238 ~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         238 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            3322211  012348999999999999999999999999999999999999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.3e-24  Score=204.65  Aligned_cols=215  Identities=19%  Similarity=0.129  Sum_probs=191.3

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHH
Q 014994          100 VIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSE  179 (415)
Q Consensus       100 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~  179 (415)
                      +.++||+|+..|+.+++++|+.+|++++..  +..|.||||.++...+.++...++..  .......+..+.||+++|+.
T Consensus       165 ~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~~~t~l~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~t~l~~a~~  240 (408)
T d1n11a_         165 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSP--AWNGYTPLHIAAKQNQVEVARSLLQY--GGSANAESVQGVTPLHLAAQ  240 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCccccc--CCCCCCcchhhhccchhhhhhhhhhc--cccccccCCCCCCHHHHHHH
Confidence            456899999999999999999999999986  88999999999999999999999987  65677778899999999977


Q ss_pred             HHhhhhhhc-cccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHH
Q 014994          180 IKSLRVKSN-QESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVL  254 (415)
Q Consensus       180 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll  254 (415)
                      .....+... ...+   ...+..+..|.|||+.|+..++.+++++|+++| ++   +..+.||||.|+..++.++++.++
T Consensus       241 ~~~~~~~~~~~~~~---~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll  317 (408)
T d1n11a_         241 EGHAEMVALLLSKQ---ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL  317 (408)
T ss_dssp             TTCHHHHHHHHTTT---CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             hCcHhHhhhhhccc---cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeec
Confidence            766655222 2333   344556678999999999999999999999999 54   457889999999999999999999


Q ss_pred             hcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHh
Q 014994          255 NMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASK  322 (415)
Q Consensus       255 ~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~  322 (415)
                      .. |+++|.+|.+|+||||+|+..|+.++|++||++|||+|.+|.+|+||||+|+..|+.++|++|..
T Consensus       318 ~~-g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         318 QH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cc-cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            96 89999999999999999999999999999999999999999999999999999999999986654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.9e-24  Score=184.30  Aligned_cols=194  Identities=19%  Similarity=0.115  Sum_probs=165.8

Q ss_pred             CCChhHHHHHHHcCcHHHHHHHHHhh--cCCCCCccccCCCChHHHHHHHHhhhhh-hccccccCccCCCCCCccccHHH
Q 014994          133 EDVLPILVAAFHCQLNMLRSYCIQRI--AGSNLDNFCLERELPDEVSSEIKSLRVK-SNQESEANIAEVDPMHAKIVRRI  209 (415)
Q Consensus       133 ~~g~t~L~~A~~~g~~~lv~~ll~~~--~~~~~~~~~~~g~tpl~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~t~L  209 (415)
                      ++|.||||+|+.+|+.++++.|++..  .+.+++..|..|.||||+|+..+...+. .+++.|++..   ..+..|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~---~~~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---CCCTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccc---cccccccccc
Confidence            47999999999999999999888632  3778999999999999999998887764 4456665544   4556899999


Q ss_pred             HHHHhcCCHHHHHHHHHCC--------CCCCCCchHHHHHHHCCCHHHHHHHHhcCCCCc-cccCCCCChHHHHHHHcCC
Q 014994          210 HKALHSDDVELLKLLLDVS--------NVTLDDAYALHYAAACCSPKVFKEVLNMDSAGL-NLKDARGRTVLHVAARRNE  280 (415)
Q Consensus       210 ~~A~~~g~~~~v~~Ll~~g--------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadv-n~~d~~g~TpLh~A~~~~~  280 (415)
                      +.|...++.++++.+....        .......+||+.+...........|... ..+. ...+..|.+||+.|+..+.
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcc-ccccccccccchhhHHHHHHHhhh
Confidence            9999999999999888765        1234567899999999999999988876 4554 4456789999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCcccc
Q 014994          281 PEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQETNKD  330 (415)
Q Consensus       281 ~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~~~~  330 (415)
                      ..+++.++++|.+++.+|..|.||||+|+..|+.+++++|++.|++++..
T Consensus       157 ~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~  206 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  206 (228)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             hhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            99999999999999999999999999999999999999999999987643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-24  Score=191.53  Aligned_cols=162  Identities=13%  Similarity=-0.008  Sum_probs=140.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHH
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVS  177 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a  177 (415)
                      ..+.||||+|+..|+.+++++|++.|++++.+  |..|.|||++|+..|+.++++.++....  .....           
T Consensus        37 ~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~--d~~g~t~l~~~~~~~~~~~~~~l~~~~~--~~~~~-----------  101 (221)
T d1iknd_          37 NLQQTPLHLAVITNQPEIAEALLGAGCDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCT--TPHLH-----------  101 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHSTT--TTSSS-----------
T ss_pred             CCCCcccccccccccccccccccccccccccc--ccccccccccccccccccccchhhhhcc--ccccc-----------
Confidence            35779999999999999999999999999986  8999999999999999999999998622  11100           


Q ss_pred             HHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CC----CCCCchHHHHHHHCCCHHHHHH
Q 014994          178 SEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NV----TLDDAYALHYAAACCSPKVFKE  252 (415)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~----~~~g~tpL~~A~~~g~~~~v~~  252 (415)
                                        .........|.||||.|+..|+.+++++|+..| .+    +..|.||||+|+..|+.+++++
T Consensus       102 ------------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~  163 (221)
T d1iknd_         102 ------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL  163 (221)
T ss_dssp             ------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ------------------ccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHH
Confidence                              111123346899999999999999999999998 33    3579999999999999999999


Q ss_pred             HHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 014994          253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGAR  293 (415)
Q Consensus       253 Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gad  293 (415)
                      |++. |+|+|.+|..|+||||+|+..++.+++++|++.+.+
T Consensus       164 Ll~~-gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         164 LLKC-GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHTT-TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHhc-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            9985 999999999999999999999999999999998765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-24  Score=173.23  Aligned_cols=117  Identities=21%  Similarity=0.194  Sum_probs=107.3

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCH
Q 014994          206 VRRIHKALHSDDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEP  281 (415)
Q Consensus       206 ~t~L~~A~~~g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~  281 (415)
                      .++|+.|+..|+.++|++|+++| ++   |.+|+||||+|+..|+.+++++|++. |+++|.+|.+|+||||+|+..|+.
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccc-ccccccccccCcccccccchhhHH
Confidence            37899999999999999999999 54   57899999999999999999999997 899999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCC-CCCcHHHHH--HHcCCcchHHHHHhc
Q 014994          282 EVMVTLLSKGARASETTS-DGQTAVAIC--RRMTRRKDYIEASKQ  323 (415)
Q Consensus       282 ~~v~~Ll~~Gadin~~d~-~g~tpL~~A--~~~~~~~~v~~l~~~  323 (415)
                      ++|++|+++|||++..+. .|+||++++  ...|+.+++++|+..
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999999998874 689998776  567889999999865

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.6e-23  Score=170.58  Aligned_cols=121  Identities=19%  Similarity=0.226  Sum_probs=109.7

Q ss_pred             cHHHHHHHhcCCHHHHHHHHHCC-CC---------CCCCchHHHHHHHC---CCHHHHHHHHhcCCCCccccCCCCChHH
Q 014994          206 VRRIHKALHSDDVELLKLLLDVS-NV---------TLDDAYALHYAAAC---CSPKVFKEVLNMDSAGLNLKDARGRTVL  272 (415)
Q Consensus       206 ~t~L~~A~~~g~~~~v~~Ll~~g-~~---------~~~g~tpL~~A~~~---g~~~~v~~Ll~~~gadvn~~d~~g~TpL  272 (415)
                      ...|..|+..++...+..++..| ++         +..|+||||+|+..   |+.++|++|++. |+|+|.+|.+|+|||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpL   85 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhcccc
Confidence            34566788999999999999888 43         45689999999974   678999999997 899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcchHHHHHhcCCCc
Q 014994          273 HVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRKDYIEASKQGQET  327 (415)
Q Consensus       273 h~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~~v~~l~~~g~~~  327 (415)
                      |+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|++.+...
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999987654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-23  Score=164.36  Aligned_cols=118  Identities=18%  Similarity=0.090  Sum_probs=101.2

Q ss_pred             CChhHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHH
Q 014994          134 DVLPILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKAL  213 (415)
Q Consensus       134 ~g~t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  213 (415)
                      .+.++||+|+..|+.+++++|++.  +.+++                                   ..+.+|.||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~--gad~n-----------------------------------~~~~~g~t~l~~a~   44 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEA--GANPN-----------------------------------APNSYGRRPIQVMM   44 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTT--TCCTT-----------------------------------CCCSSSCCTTTSSC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHc--CCccc-----------------------------------cccccccccccccc
Confidence            356899999999999999999987  44443                                   34456778888664


Q ss_pred             hcCCHHHHHHHHHCC-CCC---CCCc-hHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q 014994          214 HSDDVELLKLLLDVS-NVT---LDDA-YALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLL  288 (415)
Q Consensus       214 ~~g~~~~v~~Ll~~g-~~~---~~g~-tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll  288 (415)
                       .|+.+++++|+++| +++   ..|. ||||+|+..|+.+++++|++. |+|++.+|..|+||||+|+.+|+.+++++|+
T Consensus        45 -~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          45 -MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             -TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             -ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence             68999999999999 553   4454 799999999999999999997 8999999999999999999999999999998


Q ss_pred             hC
Q 014994          289 SK  290 (415)
Q Consensus       289 ~~  290 (415)
                      +.
T Consensus       123 sa  124 (125)
T d1bi7b_         123 AA  124 (125)
T ss_dssp             SC
T ss_pred             hc
Confidence            63

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1e-22  Score=160.36  Aligned_cols=96  Identities=18%  Similarity=0.113  Sum_probs=91.9

Q ss_pred             chHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCc
Q 014994          235 AYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRR  314 (415)
Q Consensus       235 ~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~  314 (415)
                      .|||++|+.+|+.++|+.|++. |+|+|.+|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            4899999999999999999986 899999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHhcCCCccccc
Q 014994          315 KDYIEASKQGQETNKDR  331 (415)
Q Consensus       315 ~~v~~l~~~g~~~~~~~  331 (415)
                      +++++|++.|++++...
T Consensus        82 ~~v~~Ll~~Gad~~~~d   98 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKG   98 (118)
T ss_dssp             HHHHHHHTTCCCSSSSS
T ss_pred             hhhhhhhcccccceeeC
Confidence            99999999999886543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=1.5e-23  Score=196.83  Aligned_cols=151  Identities=13%  Similarity=0.034  Sum_probs=114.3

Q ss_pred             HHcCcHHHHHHHHHhCCCcccc---------cccCCChhHHHHHHHcCcHHHHHHH---HHhhcCCCCCccccCCCChHH
Q 014994          108 AALQMKDRVFLLQHWLLGMVGK---------ALVEDVLPILVAAFHCQLNMLRSYC---IQRIAGSNLDNFCLERELPDE  175 (415)
Q Consensus       108 ~~~g~~~~v~~Ll~~g~~~~~~---------~~~~~g~t~L~~A~~~g~~~lv~~l---l~~~~~~~~~~~~~~g~tpl~  175 (415)
                      ...+..++.+++...+++++..         ..+..|.||||+|+.+|+.++++++   ++.  +               
T Consensus        54 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~--~---------------  116 (346)
T d2ajaa1          54 GTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS--D---------------  116 (346)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C--C---------------
T ss_pred             hhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC--C---------------
Confidence            3344556666666655544332         0156788999999999998777663   332  2               


Q ss_pred             HHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHHHHHHCC-CCC-----CCCchHHHHHHHCCCHHH
Q 014994          176 VSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLKLLLDVS-NVT-----LDDAYALHYAAACCSPKV  249 (415)
Q Consensus       176 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~-----~~g~tpL~~A~~~g~~~~  249 (415)
                                          ..++.+|.+|.||||+||..|+.++|++|++.| +++     .+|+||||+||.+|+.++
T Consensus       117 --------------------~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~i  176 (346)
T d2ajaa1         117 --------------------EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV  176 (346)
T ss_dssp             --------------------SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHH
T ss_pred             --------------------CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHH
Confidence                                345556678999999999999999999999999 553     358999999999999999


Q ss_pred             HHHHHhcCCCCc---cccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 014994          250 FKEVLNMDSAGL---NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASE  296 (415)
Q Consensus       250 v~~Ll~~~gadv---n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~  296 (415)
                      |++|++. |++.   +..+.+|.||||.|+.+|+.++|++|+++|++++.
T Consensus       177 v~~Ll~~-~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         177 LNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHc-CCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence            9999986 7665   34456778889999999999999999999988763

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2e-22  Score=185.58  Aligned_cols=169  Identities=9%  Similarity=-0.069  Sum_probs=114.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHhCCCcccccccCCChhHHHHHHHcCc-------HHHHHHHHHhhcCCCCCccccCC
Q 014994           98 NYVIELMYASAALQMKDRVFLLQHWLLGMVGKALVEDVLPILVAAFHCQL-------NMLRSYCIQRIAGSNLDNFCLER  170 (415)
Q Consensus        98 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~-------~~lv~~ll~~~~~~~~~~~~~~g  170 (415)
                      ..+.||||+|+..|+.++|++|++.|++++.+  |..|.||||.|+..++       .++++++..     .++..|..|
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~--d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~-----~~~~~d~~g  177 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-----CLILEDSMN  177 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-----GGGEECTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcC--CcccccHHHHhhhcccchhhhhHHHHHHHHhh-----hhhhccccc
Confidence            34679999999999999999999999999987  9999999999999876       245555433     456678899


Q ss_pred             CChHHHHHHHHhh-------------hhhhccccccCccCCCCCCccccHHHHHHHhcCCHHHHH-----HHHHCC--CC
Q 014994          171 ELPDEVSSEIKSL-------------RVKSNQESEANIAEVDPMHAKIVRRIHKALHSDDVELLK-----LLLDVS--NV  230 (415)
Q Consensus       171 ~tpl~~a~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~-----~Ll~~g--~~  230 (415)
                      +||||+++.....             .+......+..  ........+.++++.+........+.     .++...  ..
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~  255 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR--PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ  255 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGC--CEEEC----------------CHHHHHCSHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCc--chhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCC
Confidence            9999988544321             11111111111  11122234556666555544433332     233333  35


Q ss_pred             CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHH
Q 014994          231 TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAA  276 (415)
Q Consensus       231 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~  276 (415)
                      |..|+||||+|++.|+.++|++||+. |+|++.+|..|+|||++|+
T Consensus       256 D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence            78899999999999999999999986 9999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.4e-21  Score=155.15  Aligned_cols=92  Identities=16%  Similarity=0.128  Sum_probs=89.4

Q ss_pred             hHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCcc
Q 014994          236 YALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRRK  315 (415)
Q Consensus       236 tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~~Gadin~~d~~g~tpL~~A~~~~~~~  315 (415)
                      ++|+.||..|+.++|+.|++. |+|+|.+|.+|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            689999999999999999986 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCCcc
Q 014994          316 DYIEASKQGQETN  328 (415)
Q Consensus       316 ~v~~l~~~g~~~~  328 (415)
                      ++++|+++|++++
T Consensus        82 ~v~~Ll~~ga~v~   94 (130)
T d1ycsb1          82 VCKFLVESGAAVF   94 (130)
T ss_dssp             HHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCCcc
Confidence            9999999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.3e-20  Score=152.55  Aligned_cols=125  Identities=20%  Similarity=0.202  Sum_probs=101.0

Q ss_pred             hHHHHHHHcCcHHHHHHHHHhhcCCCCCccccCCCChHHHHHHHHhhhhhhccccccCccCCCCCCccccHHHHHHHhc-
Q 014994          137 PILVAAFHCQLNMLRSYCIQRIAGSNLDNFCLERELPDEVSSEIKSLRVKSNQESEANIAEVDPMHAKIVRRIHKALHS-  215 (415)
Q Consensus       137 t~L~~A~~~g~~~lv~~ll~~~~~~~~~~~~~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-  215 (415)
                      ..|..|+..++...+..++..  +.+++...                             .....+..|.||||+|+.. 
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~--g~d~~~~~-----------------------------~~~~~~~~g~t~Lh~A~~~~   56 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD--GVDLTEKI-----------------------------PLANGHEPDETALHLAVRSV   56 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT--TCCTTSBC-----------------------------CCSSCSSTTCBHHHHHHHHC
T ss_pred             HHHHHHHHhCCHHHHHHHHHc--CCCcCCCC-----------------------------CcccCCCCCCchHHHHHHhc
Confidence            456677888887777666655  33332111                             1112345799999999974 


Q ss_pred             --CCHHHHHHHHHCC-CC---CCCCchHHHHHHHCCCHHHHHHHHhcCCCCccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 014994          216 --DDVELLKLLLDVS-NV---TLDDAYALHYAAACCSPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLS  289 (415)
Q Consensus       216 --g~~~~v~~Ll~~g-~~---~~~g~tpL~~A~~~g~~~~v~~Ll~~~gadvn~~d~~g~TpLh~A~~~~~~~~v~~Ll~  289 (415)
                        |+.++|++|+++| ++   |..|+||||+|+..|+.+++++|++. |+|++.+|..|+||||+|+..|+.+++++|++
T Consensus        57 ~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          57 DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             CTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCChhhhhhhhcccccccccccccccccccccc-CccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence              7889999999999 54   56899999999999999999999986 99999999999999999999999999999999


Q ss_pred             CCCC
Q 014994          290 KGAR  293 (415)
Q Consensus       290 ~Gad  293 (415)
                      .++.
T Consensus       136 ~~~~  139 (154)
T d1dcqa1         136 ALSG  139 (154)
T ss_dssp             HHTT
T ss_pred             hCCC
Confidence            8764

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-10  Score=90.73  Aligned_cols=91  Identities=18%  Similarity=0.258  Sum_probs=68.3

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|++||+||+||+++|+||+++|.+....+   ........       .+..+.|..++.|+|+|++...     
T Consensus        28 v~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~---~~~~~~~~-------~v~~~~f~~ll~~~Ytg~~~i~-----   92 (122)
T d1r29a_          28 VVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN---LSVINLDP-------EINPEGFNILLDFMYTSRLNLR-----   92 (122)
T ss_dssp             EEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTT---CSEEECCT-------TSCHHHHHHHHHHHHHSCCCCC-----
T ss_pred             EEEEECCEEEEEehHHhhhCCHHHHHHhccchhhh---cceeeeec-------ccCHHHHHHHHhhhcCCeecCc-----
Confidence            45789999999999999999999999998774431   11111112       3555699999999999987542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHHh
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQHW  122 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~  122 (415)
                                     .+.....|..|..++..++.+.+.+.
T Consensus        93 ---------------~~~v~~ll~~A~~l~i~~L~~~C~~~  118 (122)
T d1r29a_          93 ---------------EGNIMAVMATAMYLQMEHVVDTCRKF  118 (122)
T ss_dssp             ---------------TTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------------hhhHHHHHHHHHHHCcHHHHHHHHHH
Confidence                           22366788999999999888876553

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1e-10  Score=90.61  Aligned_cols=85  Identities=21%  Similarity=0.328  Sum_probs=66.1

Q ss_pred             eeeeecccchhhHHHHHhhccHHHHHHHccCCCCCCCCCCccccccccccCCCchhHHHHHHHHHHHhcccCCCCCCCcc
Q 014994            2 LRLLLRANQWRLIAAYCLSAVKFFRRLLNLRNDGSVSEGKPKYLLTDLVPCDGKFGFEAFNDILHYIYTGKLKAPPPEVS   81 (415)
Q Consensus         2 ~~~~~~~~~~~~h~aila~~s~~f~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ly~g~~~~~~~~~~   81 (415)
                      +.+.++|++|++||+|||++|+||+++|.+..        ..+.+.++.       .++|..++.|+|||++...     
T Consensus        31 v~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~--------~~i~~~~v~-------~~~f~~ll~~~Ytg~i~l~-----   90 (121)
T d1buoa_          31 VVIMVDSQEFHAHRTVLACTSKMFEILFHRNS--------QHYTLDFLS-------PKTFQQILEYAYTATLQAK-----   90 (121)
T ss_dssp             EEEEESSCEEEECHHHHHHHCHHHHHHTTSCC--------SEEEECSSC-------HHHHHHHHHHHHHSCCCCC-----
T ss_pred             EEEEECCEEEEEEHHHhcccChhhhhhccCcc--------ceeecCCCC-------HHHHHHHHHheEccccCCc-----
Confidence            45778999999999999999999999997542        234444444       4499999999999987542     


Q ss_pred             cccCCCCCCcCCCchhhhhHHHHHHHHHcCcHHHHHHHHH
Q 014994           82 ACVDDACVHVSCPSSVNYVIELMYASAALQMKDRVFLLQH  121 (415)
Q Consensus        82 ~~~~~~c~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~  121 (415)
                                     .+.....+..|..++..++.+.+.+
T Consensus        91 ---------------~~~v~~ll~~A~~l~~~~L~~~C~~  115 (121)
T d1buoa_          91 ---------------AEDLDDLLYAAEILEIEYLEEQCLK  115 (121)
T ss_dssp             ---------------GGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                           2345678888999999998876654