Citrus Sinensis ID: 014995

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-----

MWILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVCNRTRTALPQGPDKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS

ccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccccccEEEEEEEEEcccccEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEEEEEcccccccccccccEEEEEEEccccccccccccccccccccEEEccccccccEEccccccccccEEEEccccccccccccEEccEEHHHccccccccccccccccccEEEEEcEEEEEEcccEEEEEccccEEEEEcccEEEEEEEEccccccEEEEEEEEEEEEEEEEEccccEEEEcccccc

cHHHHHHHHHHHHHHHHHHcHHHHcccccccEEEEEEccccccccccccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccEEEEccccHccccccccccccccccccccccccHHHHHccccccccccccccEEEEEEEccccccccEEEEEEEEEcccccccccEcccEEEEcccccccccccccEEEEcccccccHHHHccccEEEEEcccccccccEEEEcccccccccccccccccEEEEcccEEEEccccHEccccccEEEEcEEEEEEcccEEEEEccccEEEEccccEEEEEEEcccccccEEEEEEEEEccEEEEEEccccEEEEcccccc

MWILSKAFLLFICLLCssnngayaddndlshshivsvssllppnvcnrtrtalpqgpdkaSLEVVSkygpcsrlnqgisthapSLEEILRQDQQRLHlknsrrlrkpfpeflkrteaftfpanindtvadEYYIVVAIGEPKQYVSLLLDtgsdvtwtqckpcihcfqqrdpffyasksktffkipcnstscrilresfpfgncnskecpfniqyadgsgsggfwatDRITIQeansngyftryPFLLGCinnssgdksgasgimgldrspvsiitrtntsyfsyclpspygstgyitfgktdtVNTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGfatyppdpnsitlgnvqqrghevhydvagrrlgfgpgncs

MWILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVCNRTRtalpqgpdkaSLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQrlhlknsrrlrkpfpeflkrteaftfpanindtVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGrrlgfgpgncs

MWILSKAFLLFICLLCSSNNGAYADDNDlshshivsvssllPPNVCNRTRTALPQGPDKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS

*WILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVC*************************************************************FPEFLKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINN**********IMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRL********

*****KAFLLFICLLCSSNNGAYA*DNDLSHSHIVSVSSL**************************KYG******************ILRQDQQ******************************NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYA**SK**FKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG************RSPVSIITRTNTSYFSYCLP*****TGYITFGKTDTVNTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS

MWILSKAFLLFICLLCSSNNGAYADDNDLSHSHIVSVSSLLPPNVCN**********DKASLEVVSKYGPCSRLNQG***HAPSLEEILRQDQQRLHLKNSRRLR*********************TVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSYFSYCLPSPYGSTGYITFGKTDTVNTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG*C*

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oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		415	2.2.26 [Sep-21-2011]
Q9LHE3		470	Protein ASPARTIC PROTEASE	no	no	0.787	0.695	0.264	8e-27
Q766C2		438	Aspartic proteinase nepen	N/A	no	0.450	0.426	0.343	6e-25
Q766C3		437	Aspartic proteinase nepen	N/A	no	0.438	0.416	0.325	1e-22
Q9LS40		500	Protein ASPARTIC PROTEASE	no	no	0.356	0.296	0.369	1e-19
Q6XBF8		437	Aspartic proteinase CDR1	no	no	0.479	0.455	0.331	8e-17
Q3EBM5		447	Probable aspartic proteas	no	no	0.440	0.409	0.321	9e-15
Q9S9K4		475	Aspartic proteinase-like	no	no	0.402	0.351	0.276	2e-11
Q9LZL3		453	Aspartic proteinase PCS1	no	no	0.371	0.339	0.263	1e-10
P69476		164	Aspartic proteinase nepen	N/A	no	0.221	0.560	0.336	1e-07
A2ZC67		410	Aspartic proteinase Asp1	N/A	no	0.445	0.451	0.244	2e-07

>sp\|Q9LHE3\|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1	Back alignment and function desciption

 Score =  121 bits (304), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 164/401 (40%), Gaps = 74/401 (18%)

Query: 81  HAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANI---NDTVADEYYIVVA 137
           H   L   +R+D  R+     R   K  P    R E   F ++I    D  + EY++ + 
Sbjct: 77  HHHRLHARMRRDTDRVSAILRRISGKVIPSSDSRYEVNDFGSDIVSGMDQGSGEYFVRIG 136

Query: 138 IGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRE 197
           +G P +   +++D+GSD+ W QC+PC  C++Q DP F  +KS ++  + C S+ C  +  
Sbjct: 137 VGSPPRDQYMVIDSGSDMVWVQCQPCKLCYKQSDPVFDPAKSGSYTGVSCGSSVCDRIEN 196

Query: 198 SFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQE------ANSNGYFTRYPFL---- 247
           S     C+S  C + + Y DGS + G  A + +T  +      A   G+  R  F+    
Sbjct: 197 S----GCHSGGCRYEVMYGDGSYTKGTLALETLTFAKTVVRNVAMGCGHRNRGMFIGAAG 252

Query: 248 --------LGCINNSSGDKSGASG--------------IMGLDRSPVS-----IITRTNT 280
                   +  +   SG   GA G              + G +  PV      ++     
Sbjct: 253 LLGIGGGSMSFVGQLSGQTGGAFGYCLVSRGTDSTGSLVFGREALPVGASWVPLVRNPRA 312

Query: 281 SYFSYC-----------LPSPYG-------STGYITFGKTDTVNTLRSA--------FHK 314
             F Y            +P P G         G +       V  L +A        F  
Sbjct: 313 PSFYYVGLKGLGVGGVRIPLPDGVFDLTETGDGGVVMDTGTAVTRLPTAAYVAFRDGFKS 372

Query: 315 RMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLV-VASVSQVC 373
           +     +A G+  + DTCYDLS + +V VP ++ +F  G  L L  R  L+ V      C
Sbjct: 373 QTANLPRASGVS-IFDTCYDLSGFVSVRVPTVSFYFTEGPVLTLPARNFLMPVDDSGTYC 431

Query: 374 LGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 414
             FA  P   + I  GN+QQ G +V +D A   +GFGP  C
Sbjct: 432 FAFAASPTGLSII--GNIQQEGIQVSFDGANGFVGFGPNVC 470

Aspartic protease that may be involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -

>sp\|Q766C2\|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1	Back alignment and function description

>sp\|Q766C3\|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1	Back alignment and function description

>sp\|Q9LS40\|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1	Back alignment and function description

>sp\|Q6XBF8\|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1	Back alignment and function description

>sp\|Q3EBM5\|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1	Back alignment and function description

>sp\|Q9S9K4\|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2	Back alignment and function description

>sp\|Q9LZL3\|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1	Back alignment and function description

>sp\|P69476\|NEP1_NEPDI Aspartic proteinase nepenthesin-1 (Fragments) OS=Nepenthes distillatoria PE=1 SV=1	Back alignment and function description

>sp\|A2ZC67\|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		415
296082170		386	unnamed protein product [Vitis vinifera]	0.869	0.935	0.381	2e-63
296082172		376	unnamed protein product [Vitis vinifera]	0.850	0.938	0.359	3e-58
224142001		490	predicted protein [Populus trichocarpa]	0.903	0.765	0.370	3e-57
297811185		475	hypothetical protein ARALYDRAFT_325615 [	0.980	0.856	0.345	3e-57
225430555		481	PREDICTED: aspartic proteinase nepenthes	0.961	0.829	0.327	9e-56
22326716		474	aspartyl protease family protein [Arabid	0.853	0.746	0.357	2e-55
8979711		446	nucleoid DNA-binding protein cnd41-like	0.853	0.793	0.355	8e-55
224142013		477	predicted protein [Populus trichocarpa]	0.954	0.830	0.329	2e-54
356527089		488	PREDICTED: aspartic proteinase nepenthes	0.824	0.700	0.355	1e-51
356524287		481	PREDICTED: aspartic proteinase nepenthes	0.971	0.837	0.336	4e-51

>gi\|296082170\|emb\|CBI21175.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/398 (38%), Positives = 226/398 (56%), Gaps = 37/398 (9%)

Query: 41  LPPNVCNRTRTALPQGPD-KASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLK 99
           +P + C+ +    P+G D +ASLEVV K+GPCS+L      ++PS  +IL QD+ R+   
Sbjct: 1   MPSSACSPS----PKGHDQRASLEVVHKHGPCSKLRPH-KANSPSHTQILAQDESRVASI 55

Query: 100 NSRRLRKPFPEFLKRTEAFTFPANINDTVADEYYIV-VAIGEPKQYVSLLLDTGSDVTWT 158
            SR  +        +    T P+    T+    Y+V V +G PK+ ++ + DTGSD+TWT
Sbjct: 56  QSRLAKNLAGGSNLKASKATLPSKSASTLGSGNYVVTVGLGSPKRDLTFIFDTGSDLTWT 115

Query: 159 QCKPCI-HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGN---CNSKECPFNIQ 214
           QC+PC+ +C+QQR+  F  S S ++  + C+S SC  L  +   GN   C+S  C + I+
Sbjct: 116 QCEPCVGYCYQQREHIFDPSTSLSYSNVSCDSPSCEKLESAT--GNSPGCSSSTCLYGIR 173

Query: 215 YADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSI 274
           Y DGS S GF+A +++++    S   F  + F  GC  N+ G   G +G++GL R+P+S+
Sbjct: 174 YGDGSYSIGFFAREKLSL---TSTDVFNNFQF--GCGQNNRGLFGGTAGLLGLARNPLSL 228

Query: 275 ITRTNTSY---FSYCLPSPYGSTGYITFGKTD---------------TVNTLRSAFHKRM 316
           +++T   Y   FSYCLPS   STGY++FG  D                 ++++  F + M
Sbjct: 229 VSQTAQKYGKVFSYCLPSSSSSTGYLSFGSGDGDSKAVKFTPRLPPTVYSSVQKVFRELM 288

Query: 317 KKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGF 376
             Y + KG+  +LDTCYDLS Y+TV VPKI ++F GG +++L   G + V  VSQVCL F
Sbjct: 289 SDYPRVKGVS-ILDTCYDLSKYKTVKVPKIILYFSGGAEMDLAPEGIIYVLKVSQVCLAF 347

Query: 377 ATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 414
           A    D     +GNVQQ+   V YD A  R+GF P  C
Sbjct: 348 AGNSDDDEVAIIGNVQQKTIHVVYDDAEGRVGFAPSGC 385

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296082172\|emb\|CBI21177.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224142001\|ref\|XP_002324349.1\| predicted protein [Populus trichocarpa] gi\|222865783\|gb\|EEF02914.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297811185\|ref\|XP_002873476.1\| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi\|297319313\|gb\|EFH49735.1\| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|225430555\|ref\|XP_002285593.1\| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|22326716\|ref\|NP_196638.2\| aspartyl protease family protein [Arabidopsis thaliana] gi\|18700103\|gb\|AAL77663.1\| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi\|24111269\|gb\|AAN46758.1\| At5g10770/T30N20_40 [Arabidopsis thaliana] gi\|332004211\|gb\|AED91594.1\| aspartyl protease family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|8979711\|emb\|CAB96832.1\| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224142013\|ref\|XP_002324355.1\| predicted protein [Populus trichocarpa] gi\|222865789\|gb\|EEF02920.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356527089\|ref\|XP_003532146.1\| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356524287\|ref\|XP_003530761.1\| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		415
TAIR\|locus:2183730		474	AT5G10770 "AT5G10770" [Arabido	0.693	0.607	0.355	1.4e-70
TAIR\|locus:2183715		464	AT5G10760 [Arabidopsis thalian	0.677	0.605	0.336	6.1e-56
TAIR\|locus:2095042		500	ASPG1 "ASPARTIC PROTEASE IN GU	0.397	0.33	0.365	3.6e-42
TAIR\|locus:2031225		483	AT1G25510 [Arabidopsis thalian	0.385	0.331	0.345	3.2e-39
TAIR\|locus:2035297		485	AT1G01300 [Arabidopsis thalian	0.385	0.329	0.361	3.4e-39
TAIR\|locus:2076745		483	AT3G61820 [Arabidopsis thalian	0.363	0.312	0.393	1e-38
TAIR\|locus:2017799		484	AT1G79720 [Arabidopsis thalian	0.404	0.347	0.358	7.4e-38
TAIR\|locus:2045615		527	AT2G42980 [Arabidopsis thalian	0.474	0.373	0.325	2.8e-34
TAIR\|locus:2077700		535	AT3G59080 "AT3G59080" [Arabido	0.508	0.394	0.312	8.7e-34
TAIR\|locus:2056916		461	AT2G03200 [Arabidopsis thalian	0.363	0.327	0.385	5e-33

TAIR\|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 468 (169.8 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
 Identities = 108/304 (35%), Positives = 167/304 (54%)

Query:     3 ILSKAFLLFICLLCSSNNGAYADDNDXXXXXXXXXXXXXPPNVCNRTRTALPQGPDKASL 62
             +L+   +L ICL    N+GA   + D               +     R +      K+SL
Sbjct:     7 LLNIIIILCICLNLGCNDGAQERETDSHTIQVSSLLPSSSSSCVLSPRASTT----KSSL 62

Query:    63 EVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPA 122
              V  ++G CSRLN G +T +P   EILR DQ R++  +S+  +K   + +  +++   PA
Sbjct:    63 HVTHRHGTCSRLNNGKAT-SPDHVEILRLDQARVNSIHSKLSKKLATDHVSESKSTDLPA 121

Query:   123 NINDTVADEYYIV-VAIGEPKQYVSLLLDTGSDVTWTQCKPCIH-CFQQRDPFFYASKSK 180
                 T+    YIV V +G PK  +SL+ DTGSD+TWTQC+PC+  C+ Q++P F  SKS 
Sbjct:   122 KDGSTLGSGNYIVTVGLGTPKNDLSLIFDTGSDLTWTQCQPCVRTCYDQKEPIFNPSKST 181

Query:   181 TFFKIPCNSTSCRILRESFP-FGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNG 239
             +++ + C+S +C  L  +    G+C++  C + IQY D S S GF A ++ T+   NS+ 
Sbjct:   182 SYYNVSCSSAACGSLSSATGNAGSCSASNCIYGIQYGDQSFSVGFLAKEKFTL--TNSDV 239

Query:   240 YFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTSY---FSYCLPSPYGSTGY 296
             +   Y    GC  N+ G  +G +G++GL R  +S  ++T T+Y   FSYCLPS    TG+
Sbjct:   240 FDGVY---FGCGENNQGLFTGVAGLLGLGRDKLSFPSQTATAYNKIFSYCLPSSASYTGH 296

Query:   297 ITFG 300
             +TFG
Sbjct:   297 LTFG 300

GO:0003677 "DNA binding" evidence=ISS

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

TAIR\|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2045615 AT2G42980 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.23.25	LOW CONFIDENCE prediction!
3rd Layer	3.4.23	LOW CONFIDENCE prediction!
3rd Layer	3.4.23.12	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_6000835	annotation not avaliable (475 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		415
cd05472		299	cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin	1e-45
cd05476		265	cd05476, pepsin_A_like_plant, Chroloplast Nucleoid	1e-42
PLN03146		431	PLN03146, PLN03146, aspartyl protease family prote	6e-32
cd05471		283	cd05471, pepsin_like, Pepsin-like aspartic proteas	8e-29
cd05475		273	cd05475, nucellin_like, Nucellins, plant aspartic	1e-18
cd06096		326	cd06096, Plasmepsin_5, Plasmepsins are a class of	1e-18
pfam00026		316	pfam00026, Asp, Eukaryotic aspartyl protease	1e-10
cd05470		109	cd05470, pepsin_retropepsin_like, Cellular and ret	1e-10
cd06097		278	cd06097, Aspergillopepsin_like, Aspergillopepsin_l	4e-09
cd05474		295	cd05474, SAP_like, SAPs, pepsin-like proteinases s	2e-07
cd05489		362	cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit	4e-07
cd05485		329	cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi	2e-04
PLN03146		431	PLN03146, PLN03146, aspartyl protease family prote	6e-04
cd05490		325	cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family	0.002
cd06098		317	cd06098, phytepsin, Phytepsin, a plant homolog of	0.002

>gnl\|CDD\|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase	Back alignment and domain information

 Score =  159 bits (404), Expect = 1e-45
 Identities = 106/346 (30%), Positives = 138/346 (39%), Gaps = 109/346 (31%)

Query: 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNST 190
           EY + V +G P +  ++++DTGSD+TW QC+PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 191 SCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANS------------N 238
                             C + + Y DGS + G  ATD +T+  ++              
Sbjct: 34  ------------------CLYQVSYGDGSYTTGDLATDTLTLGSSDVVPGFAFGCGHDNE 75

Query: 239 GYFTRYPFLLG----------------------CINNSSGDKSG-------ASGIMGLDR 269
           G F     LLG                      C+ + S   SG       AS   G   
Sbjct: 76  GLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASF 135

Query: 270 SPVSIITRTNTSYF---------SYCLPSPYGSTG----------YITFGKTDTVNTLRS 310
           +P+    R  T Y+            LP P  S G           IT         LR 
Sbjct: 136 TPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRD 195

Query: 311 AFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTL-VVASV 369
           AF   M  Y +A G   +LDTCYDLS + +V VP +++HF GG D+ELD  G L  V   
Sbjct: 196 AFRAAMAAYPRAPGF-SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDS 254

Query: 370 SQVCLGFA-TYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 414
           SQVCL FA T      SI +GNVQQ+   V YDVAG R+GF PG C
Sbjct: 255 SQVCLAFAGTSDDGGLSI-IGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299

>gnl\|CDD\|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants	Back alignment and domain information

>gnl\|CDD\|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH	Back alignment and domain information

>gnl\|CDD\|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation	Back alignment and domain information

>gnl\|CDD\|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite	Back alignment and domain information

>gnl\|CDD\|215663 pfam00026, Asp, Eukaryotic aspartyl protease	Back alignment and domain information

>gnl\|CDD\|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases	Back alignment and domain information

>gnl\|CDD\|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin	Back alignment and domain information

>gnl\|CDD\|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins	Back alignment and domain information

>gnl\|CDD\|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall	Back alignment and domain information

>gnl\|CDD\|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases	Back alignment and domain information

>gnl\|CDD\|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases	Back alignment and domain information

>gnl\|CDD\|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		415
PLN03146		431	aspartyl protease family protein; Provisional	100.0
KOG1339		398	consensus Aspartyl protease [Posttranslational mod	100.0
cd05489		362	xylanase_inhibitor_I_like TAXI-I inhibits degradat	100.0
cd05472		299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	100.0
cd06096		326	Plasmepsin_5 Plasmepsins are a class of aspartic p	100.0
cd05478		317	pepsin_A Pepsin A, aspartic protease produced in g	100.0
cd05490		325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	100.0
cd05486		316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	100.0
cd05488		320	Proteinase_A_fungi Fungal Proteinase A , aspartic	100.0
cd05477		318	gastricsin Gastricsins, asparate proteases produce	100.0
PTZ00165		482	aspartyl protease; Provisional	100.0
cd05485		329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	100.0
cd05487		326	renin_like Renin stimulates production of angioten	100.0
PTZ00147		453	plasmepsin-1; Provisional	100.0
cd05475		273	nucellin_like Nucellins, plant aspartic proteases	100.0
cd06098		317	phytepsin Phytepsin, a plant homolog of mammalian	100.0
cd05473		364	beta_secretase_like Beta-secretase, aspartic-acid	100.0
PTZ00013		450	plasmepsin 4 (PM4); Provisional	100.0
cd05476		265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	100.0
cd06097		278	Aspergillopepsin_like Aspergillopepsin_like, aspar	100.0
PF00026		317	Asp: Eukaryotic aspartyl protease The Prosite entr	100.0
PF14543		164	TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A	100.0
cd05474		295	SAP_like SAPs, pepsin-like proteinases secreted fr	100.0
cd05471		283	pepsin_like Pepsin-like aspartic proteases, biloba	100.0
cd05470		109	pepsin_retropepsin_like Cellular and retroviral pe	99.91
PF14541		161	TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D	99.72
cd05483		96	retropepsin_like_bacteria Bacterial aspartate prot	97.75
TIGR02281		121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	94.9
PF13650		90	Asp_protease_2: Aspartyl protease	94.6
cd05484		91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	90.79
cd05479		124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	89.19
PF13975		72	gag-asp_proteas: gag-polyprotein putative aspartyl	82.81
PF00077		100	RVP: Retroviral aspartyl protease The Prosite entr	82.28

>PLN03146 aspartyl protease family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.6e-64  Score=515.51  Aligned_cols=333  Identities=29%  Similarity=0.548  Sum_probs=270.3

Q ss_pred             CceEEEEEcCCCCCCCCCCCCCCCCCCHHHHHHHhHHHHHhhhcccccCCCCccccCCcceeeeeecCCCCC-ceEEEEE
Q 014995           58 DKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVA-DEYYIVV  136 (415)
Q Consensus        58 ~~~~l~l~hr~~p~sp~~~~~~~~~~~~~~~~~~d~~R~~~l~~rr~~~~~~~~~~~~~~~~~p~~~~~~~~-~~Y~v~v  136 (415)
                      ++++++|+||++||+|++....+..+.+.++++||++|++++.+ +...            ..|+..+...+ ++|+++|
T Consensus        23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~------------~~~~~~~~~~~~~~Y~v~i   89 (431)
T PLN03146         23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRP-TDAS------------PNDPQSDLISNGGEYLMNI   89 (431)
T ss_pred             CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh-cccc------------CCccccCcccCCccEEEEE
Confidence            57999999999999998654444456788899999999988866 4221            12333333344 8999999


Q ss_pred             EeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCC-CCCceeEec
Q 014995          137 AIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNS-KECPFNIQY  215 (415)
Q Consensus       137 ~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~-~~c~y~i~Y  215 (415)
                      .||||||++.|+|||||+++||||.+|..|+.|..+.|||++|+||+.++|+++.|+.+..   ...|.. +.|.|.+.|
T Consensus        90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~---~~~c~~~~~c~y~i~Y  166 (431)
T PLN03146         90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN---QASCSDENTCTYSYSY  166 (431)
T ss_pred             EcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC---CCCCCCCCCCeeEEEe
Confidence            9999999999999999999999999999999999999999999999999999999987652   224753 569999999


Q ss_pred             CCCCeEeEEEEEEEEEecccCCC-ceeeecCeEEEEEEcCCCCCC-CCCcccccCCCCceeecccccce---EEEEcCCC
Q 014995          216 ADGSGSGGFWATDRITIQEANSN-GYFTRYPFLLGCINNSSGDKS-GASGIMGLDRSPVSIITRTNTSY---FSYCLPSP  290 (415)
Q Consensus       216 gdgs~~~G~l~~Dtltl~~~~~~-~~v~~~~~~FGc~~~~~g~f~-~~~GIlGLG~~~~Sl~sQl~~~~---FSycL~~~  290 (415)
                      +||+.+.|++++|+|+|++..++ ..++  ++.|||++.+.|.|. ..+||||||++++|+++|+....   |||||++.
T Consensus       167 gdgs~~~G~l~~Dtltlg~~~~~~~~v~--~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~  244 (431)
T PLN03146        167 GDGSFTKGNLAVETLTIGSTSGRPVSFP--GIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPL  244 (431)
T ss_pred             CCCCceeeEEEEEEEEeccCCCCcceeC--CEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCC
Confidence            99998999999999999874321 1355  999999999888774 58999999999999999987533   99999763


Q ss_pred             C---CCceEEEECCC-------------------------------------------------------cCh-------
Q 014995          291 Y---GSTGYITFGKT-------------------------------------------------------DTV-------  305 (415)
Q Consensus       291 ~---~~~G~L~fG~t-------------------------------------------------------GTv-------  305 (415)
                      .   ...|+|+||+.                                                       ||.       
T Consensus       245 ~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~  324 (431)
T PLN03146        245 SSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD  324 (431)
T ss_pred             CCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence            2   24789999971                                                       121       


Q ss_pred             --hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEEEEEecCCCC
Q 014995          306 --NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDP  383 (415)
Q Consensus       306 --~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cla~~~~~~~~  383 (415)
                        .+++++|+++|...+..... ..++.||+...  ...+|+|+|+|+ |++++|++++|++....+..|+++++.   .
T Consensus       325 ~y~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~~---~  397 (431)
T PLN03146        325 FYSELESAVEEAIGGERVSDPQ-GLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIPT---S  397 (431)
T ss_pred             HHHHHHHHHHHHhccccCCCCC-CCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEecC---C
Confidence              45677777777543333332 45789998543  357899999995 899999999999987667789999865   2


Q ss_pred             CceeechhhhcceEEEEECCCCEEEEeeCCCC
Q 014995          384 NSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS  415 (415)
Q Consensus       384 ~~~IlG~~~~~~~~vvfD~~~~~iGFa~~~C~  415 (415)
                      ..+|||+.|||++||+||++++||||++.+|+
T Consensus       398 ~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        398 SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             CceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            36999999999999999999999999999995

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall	Back alignment and domain information

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase	Back alignment and domain information

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite	Back alignment and domain information

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals	Back alignment and domain information

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases	Back alignment and domain information

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease	Back alignment and domain information

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily	Back alignment and domain information

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa	Back alignment and domain information

>PTZ00165 aspartyl protease; Provisional	Back alignment and domain information

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases	Back alignment and domain information

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure	Back alignment and domain information

>PTZ00147 plasmepsin-1; Provisional	Back alignment and domain information

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation	Back alignment and domain information

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins	Back alignment and domain information

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease	Back alignment and domain information

>PTZ00013 plasmepsin 4 (PM4); Provisional	Back alignment and domain information

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants	Back alignment and domain information

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin	Back alignment and domain information

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077	Back alignment and domain information

>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A	Back alignment and domain information

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins	Back alignment and domain information

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH	Back alignment and domain information

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases	Back alignment and domain information

>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A	Back alignment and domain information

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family	Back alignment and domain information

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family	Back alignment and domain information

>PF13650 Asp_protease_2: Aspartyl protease	Back alignment and domain information

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases	Back alignment and domain information

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein	Back alignment and domain information

>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease	Back alignment and domain information

>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		415
3fv3_A		339	Secreted Aspartic Protease 1 From Candida Parapsilo		8e-06
1mpp_A		361	X-Ray Analyses Of Aspartic Proteinases. V. Structur		8e-04

>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339

Back alignment and structure

Iteration: 1

Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 73/185 (39%), Gaps = 41/185 (22%) Query: 136 VAIGEPKQYVSLLLDTGSDVTWT-----QCKPCIHCFQQRDPFFYASKSKTFFKIPCNST 190 V++G KQ ++++DTGS W QC + C S TF P +S+ Sbjct: 18 VSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC----------KSSGTF--TPSSSS 65 Query: 191 SCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGY----FTRYPF 246 S + L F I+Y DGS S G W D +TI + G T+ Sbjct: 66 SYKNLG------------AAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSV 113 Query: 247 LLGCI------NNSSGDKSGASGIMGLDRSPVSIIT--RTNTSYFSYCLPSPYGSTGYIT 298 G + N + D SG D PV++ + T+ +S L SP TG I Sbjct: 114 DQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTII 173 Query: 299 FGKTD 303 FG D Sbjct: 174 FGGVD 178

PyMOL of 3fv3

>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		415
1t6e_X		381	Xylanase inhibitor; two beta-barrel domain structu	1e-38
3aup_A		403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	3e-37
3aup_A		403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	8e-22
3vla_A		413	EDGP; extracellular, inhibitor, plant protein; HET	7e-31
2qzx_A		342	Candidapepsin-5; aspartic proteinase, aspartyl pro	6e-17
3pvk_A		342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	9e-17
1j71_A		334	Candidapepsin, aspartic proteinase; candida tropic	2e-16
3fv3_A		339	SAPP1P-secreted aspartic protease 1; secreted aspa	8e-16
3lpj_A		455	Beta-secretase 1; alzheimer'S, aspartyl protease,	3e-13
1oew_A		329	Endothiapepsin; hydrolase, aspartic proteinase mec	6e-13
3c9x_A		329	Trichoderma reesei aspartic protease; aspartic pro	7e-13
2bju_A		453	Plasmepsin II; aspartic proteinase, drug design, m	1e-12
2x0b_A		383	Renin; hydrolase-hormone complex, hydrolase hormon	2e-12
1mpp_A		361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	4e-12
3qvc_A		451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	5e-12
2apr_A		325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	1e-11
2ewy_A		383	Beta-secretase 2; BACE2, aspartic protease, hydrol	2e-11
1b5f_A		239	Protein (cardosin A); hydrolase, aspartic proteina	4e-11
1qdm_A		478	Prophytepsin; aspartic proteinases, saposin-like d	5e-11
2qp8_A		395	Beta-secretase 1; BACE1, protease, alternative spl	7e-11
3k1w_A		341	Renin; protease, alternative splicing, aspartyl pr	8e-11
1izd_A		323	Aspartic proteinase; sugar binding, acid protease,	1e-10
1am5_A		324	Pepsin, acid proteinase; aspartyl protease, hydrol	1e-10
1miq_A		375	Plasmepsin; aspartic proteinase zymogen, domain op	2e-10
1ibq_A		325	Aspergillopepsin; aspartic proteinase, hydrolase;	3e-10
1bxo_A		323	Protein (penicillopepsin); hydrolase, phosphonate	4e-10
3psg_A		370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	6e-10
3cms_A		323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	8e-10
1wkr_A		340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	8e-10
1htr_B		329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	1e-09
1lya_A		97	Cathepsin D; lysosomal aspartic protease; HET: NAG	2e-09
1tzs_A		351	Cathepsin E; hydrolase, aspartic protease, activat	5e-09
1dpj_A		329	Proteinase A; proteinase A, hydrolase-hydrolase in	8e-09
1yg9_A		330	Aspartic protease BLA G 2; allegren, hydrolase, al	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381	Back alignment and structure

 Score =  142 bits (358), Expect = 1e-38
 Identities = 47/382 (12%), Positives = 83/382 (21%), Gaps = 104/382 (27%)

Query: 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKI 185
           D     Y I    G       L+LD    + W+ C       +          +  +   
Sbjct: 10  DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAP 64

Query: 186 PCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITI------------- 232
            C + SC            +     +      G+ + G  +  R                
Sbjct: 65  GCPAPSC-------GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVN 117

Query: 233 -----------------QEANSNGYFTRYPFLL-----------GCINNSSGDKSGASGI 264
                            + +            L                          I
Sbjct: 118 VGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177

Query: 265 MGLDRSPVS-----------IITRTNTSYF---------SYCLPSPYGSTGY-------- 296
            G    P             +    + +++            +P P G+           
Sbjct: 178 FGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTR 237

Query: 297 --ITFGKTDTVNTLRSAFHKRMKKYKKAKGLED-------LLDTCYDLSAYET----VVV 343
                 + D    L  AF K +                      CYD            V
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAV 297

Query: 344 PKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFA------TYPPDPNSITLGNVQQRGHE 397
           P + +   GG D  +  + ++V       C+ F              ++ LG  Q     
Sbjct: 298 PNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFV 357

Query: 398 VHYDVAGRRLGFGPG----NCS 415
           + +D+  +RLGF        C 
Sbjct: 358 LDFDMEKKRLGFSRLPHFTGCG 379

PyMOL of 1t6e

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403	Back alignment and structure

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403	Back alignment and structure

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413	Back alignment and structure

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342	Back alignment and structure

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342	Back alignment and structure

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334	Back alignment and structure

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339	Back alignment and structure

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455	Back alignment and structure

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329	Back alignment and structure

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329	Back alignment and structure

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453	Back alignment and structure

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383	Back alignment and structure

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361	Back alignment and structure

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451	Back alignment and structure

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325	Back alignment and structure

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383	Back alignment and structure

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239	Back alignment and structure

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478	Back alignment and structure

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395	Back alignment and structure

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341	Back alignment and structure

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323	Back alignment and structure

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324	Back alignment and structure

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375	Back alignment and structure

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325	Back alignment and structure

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323	Back alignment and structure

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370	Back alignment and structure

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323	Back alignment and structure

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340	Back alignment and structure

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329	Back alignment and structure

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97	Back alignment and structure

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351	Back alignment and structure

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329	Back alignment and structure

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		415
3vla_A		413	EDGP; extracellular, inhibitor, plant protein; HET	100.0
3aup_A		403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	100.0
3psg_A		370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	100.0
3c9x_A		329	Trichoderma reesei aspartic protease; aspartic pro	100.0
1tzs_A		351	Cathepsin E; hydrolase, aspartic protease, activat	100.0
1dpj_A		329	Proteinase A; proteinase A, hydrolase-hydrolase in	100.0
3cms_A		323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	100.0
1oew_A		329	Endothiapepsin; hydrolase, aspartic proteinase mec	100.0
1j71_A		334	Candidapepsin, aspartic proteinase; candida tropic	100.0
1t6e_X		381	Xylanase inhibitor; two beta-barrel domain structu	100.0
1am5_A		324	Pepsin, acid proteinase; aspartyl protease, hydrol	100.0
2apr_A		325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	100.0
2x0b_A		383	Renin; hydrolase-hormone complex, hydrolase hormon	100.0
1mpp_A		361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	100.0
4aa9_A		320	Chymosin; hydrolase, aspartic peptidase, rennet; H	100.0
2qzx_A		342	Candidapepsin-5; aspartic proteinase, aspartyl pro	100.0
3fv3_A		339	SAPP1P-secreted aspartic protease 1; secreted aspa	100.0
1htr_B		329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	100.0
1miq_A		375	Plasmepsin; aspartic proteinase zymogen, domain op	100.0
3k1w_A		341	Renin; protease, alternative splicing, aspartyl pr	100.0
3pvk_A		342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	100.0
2bju_A		453	Plasmepsin II; aspartic proteinase, drug design, m	100.0
1qdm_A		478	Prophytepsin; aspartic proteinases, saposin-like d	100.0
1yg9_A		330	Aspartic protease BLA G 2; allegren, hydrolase, al	100.0
2ewy_A		383	Beta-secretase 2; BACE2, aspartic protease, hydrol	100.0
1izd_A		323	Aspartic proteinase; sugar binding, acid protease,	100.0
2qp8_A		395	Beta-secretase 1; BACE1, protease, alternative spl	100.0
1ibq_A		325	Aspergillopepsin; aspartic proteinase, hydrolase;	100.0
1bxo_A		323	Protein (penicillopepsin); hydrolase, phosphonate	100.0
3lpj_A		455	Beta-secretase 1; alzheimer'S, aspartyl protease,	100.0
3qvc_A		451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	100.0
3vf3_A		402	Beta-secretase 1; structure-based drug design, hyd	100.0
1wkr_A		340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	100.0
1b5f_A		239	Protein (cardosin A); hydrolase, aspartic proteina	99.96
1lya_B		241	Cathepsin D; lysosomal aspartic protease; HET: NAG	99.89
1lya_A		97	Cathepsin D; lysosomal aspartic protease; HET: NAG	99.88
1b5f_B		87	Protein (cardosin A); hydrolase, aspartic proteina	99.63
1fmb_A		104	EIAV protease; hydrolase (acid proteinase), RNA-di	83.19
2hs1_A		99	HIV-1 protease; ultra-high resolution active site	82.66

>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A	Back alignment and structure

Probab=100.00  E-value=1.1e-49  Score=406.14  Aligned_cols=281  Identities=21%  Similarity=0.411  Sum_probs=225.7

Q ss_pred             CcceeeeeecCCCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccc
Q 014995          115 TEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRI  194 (415)
Q Consensus       115 ~~~~~~p~~~~~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~  194 (415)
                      ..++.+|+.... .+++|+++|.||||||++.|+|||||+++||||.+|             .+|+||+.++|.++.|..
T Consensus         6 ~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~   71 (413)
T 3vla_A            6 PSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSL   71 (413)
T ss_dssp             CSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHH
T ss_pred             CccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccc
Confidence            346778988663 349999999999999999999999999999999976             479999999999999997


Q ss_pred             cccCC-------CCCCCCCCCCceeEec-CCCCeEeEEEEEEEEEecccCCC-----ceeeecCeEEEEEEcC--CCCCC
Q 014995          195 LRESF-------PFGNCNSKECPFNIQY-ADGSGSGGFWATDRITIQEANSN-----GYFTRYPFLLGCINNS--SGDKS  259 (415)
Q Consensus       195 ~~~~~-------~~~~C~~~~c~y~i~Y-gdgs~~~G~l~~Dtltl~~~~~~-----~~v~~~~~~FGc~~~~--~g~f~  259 (415)
                      ...+.       ..++|.++.|.|.+.| +|++.+.|++++|+|+|+..++.     ..++  ++.|||++.+  .+.+.
T Consensus        72 ~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~--~~~FGc~~~~~~~g~~~  149 (413)
T 3vla_A           72 SGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVP--RFIFSCAPTSLLQNLAS  149 (413)
T ss_dssp             TTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEE--EEEEEEECGGGGTTSCT
T ss_pred             cccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeC--CEEEECcccccccCccc
Confidence            65321       0125666779999999 58888999999999999854332     1355  9999999986  45667


Q ss_pred             CCCcccccCCCCceeecccccc-----eEEEEcCCCCCCceEEEECC---------------------------------
Q 014995          260 GASGIMGLDRSPVSIITRTNTS-----YFSYCLPSPYGSTGYITFGK---------------------------------  301 (415)
Q Consensus       260 ~~~GIlGLG~~~~Sl~sQl~~~-----~FSycL~~~~~~~G~L~fG~---------------------------------  301 (415)
                      ..+||||||++++|+++|+..+     .|||||++....+|.|+||+                                 
T Consensus       150 ~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~  229 (413)
T 3vla_A          150 GVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATST  229 (413)
T ss_dssp             TCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCC
T ss_pred             ccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccc
Confidence            8999999999999999999763     39999998555678888883                                 


Q ss_pred             -----C-------------------------------------cCh---------hhHHHHHHHHHh--hccccCCCCCC
Q 014995          302 -----T-------------------------------------DTV---------NTLRSAFHKRMK--KYKKAKGLEDL  328 (415)
Q Consensus       302 -----t-------------------------------------GTv---------~~l~~af~~~~~--~~~~~~~~~~~  328 (415)
                           +                                     ||.         .+|+++|.+++.  +++++.+. ..
T Consensus       230 ~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~-~~  308 (413)
T 3vla_A          230 QGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASV-AP  308 (413)
T ss_dssp             TTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCC-TT
T ss_pred             ccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCC-CC
Confidence                 1                                     121         456666776665  34444443 56


Q ss_pred             CcceeeccCCcc----cccceEEEEEcC-CeEEEecCCCeEEEeCCCeEEEEEEecCCC-CCceeechhhhcceEEEEEC
Q 014995          329 LDTCYDLSAYET----VVVPKIAIHFLG-GVDLELDVRGTLVVASVSQVCLGFATYPPD-PNSITLGNVQQRGHEVHYDV  402 (415)
Q Consensus       329 ~d~Cy~~~~~~~----~~~P~i~f~F~g-Ga~~~l~~~~~l~~~~~~~~Cla~~~~~~~-~~~~IlG~~~~~~~~vvfD~  402 (415)
                      ++.||+.++...    ..+|+|+|+|+| +++|+|++++|+++.+.+..|++|+..... ...||||++|||++|+|||+
T Consensus       309 ~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~  388 (413)
T 3vla_A          309 FGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDL  388 (413)
T ss_dssp             CSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEET
T ss_pred             CcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEEC
Confidence            789999886532    579999999976 489999999999987667889999876432 35799999999999999999


Q ss_pred             CCCEEEEeeC
Q 014995          403 AGRRLGFGPG  412 (415)
Q Consensus       403 ~~~~iGFa~~  412 (415)
                      +++|||||+.
T Consensus       389 ~~~riGfa~~  398 (413)
T 3vla_A          389 ATSRVGFSGT  398 (413)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999999985

PyMOL of 3vla

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}	Back alignment and structure

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A	Back alignment and structure

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*	Back alignment and structure

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}	Back alignment and structure

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*	Back alignment and structure

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A	Back alignment and structure

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...	Back alignment and structure

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2	Back alignment and structure

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A	Back alignment and structure

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2	Back alignment and structure

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A	Back alignment and structure

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}	Back alignment and structure

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*	Back alignment and structure

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A	Back alignment and structure

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}	Back alignment and structure

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*	Back alignment and structure

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A	Back alignment and structure

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*	Back alignment and structure

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...	Back alignment and structure

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*	Back alignment and structure

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...	Back alignment and structure

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2	Back alignment and structure

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*	Back alignment and structure

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}	Back alignment and structure

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*	Back alignment and structure

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...	Back alignment and structure

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2	Back alignment and structure

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A	Back alignment and structure

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*	Back alignment and structure

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*	Back alignment and structure

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...	Back alignment and structure

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2	Back alignment and structure

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2	Back alignment and structure

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*	Back alignment and structure

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*	Back alignment and structure

>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2	Back alignment and structure

>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*	Back alignment and structure

>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		415
d3cmsa_		323	b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos	3e-25
d1miqa_		373	b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e	3e-24
d1dpja_		329	b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha	1e-23
d2bjua1		329	b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad	3e-23
d2apra_		325	b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus	7e-23
d1t6ex_		381	b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr	1e-22
d1oewa_		330	b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung	6e-22
g1htr.1		372	b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens	7e-22
g1lya.1		338	b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens)	1e-21
d1bxoa_		323	b.50.1.2 (A:) Acid protease {Fungus (Penicillium j	3e-21
d1qdma2		337	b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase	3e-21
d2qp8a1		387	b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum	9e-21
d1j71a_		334	b.50.1.2 (A:) Acid protease {Yeast (Candida tropic	2e-20
d3psga_		370	b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI	3e-20
d1am5a_		324	b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo	6e-20
d1izea_		323	b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o	2e-19
g1b5f.1		326	b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin	3e-19
d1eaga_		342	b.50.1.2 (A:) Acid protease {Yeast (Candida albica	2e-18
d1hrna_		337	b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho	3e-18
d1mppa_		357	b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]	6e-17
d1smra_		335	b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu	2e-16
d1wkra_		340	b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo	1e-13

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323	Back information, alignment and structure


class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (256), Expect = 3e-25
 Identities = 47/318 (14%), Positives = 85/318 (26%), Gaps = 35/318 (11%)

Query: 123 NINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTF 182
           N  D+   +Y+  + +G P Q  ++L DTGS   W     C     +    F   KS TF
Sbjct: 10  NYLDS---QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTF 66

Query: 183 FKIPCN--------STSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQE 234
             +           S    +  ++    N    +    +   +      +   D I    
Sbjct: 67  QNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMA 126

Query: 235 ANSNGYFTRYPFLLGCINNSSGDK------------SGASGIMGLDRSPVSI------IT 276
             S       P     +N     +                 +  +D S  +       +T
Sbjct: 127 YPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVT 186

Query: 277 RTNTSYFSYCLPSPYGSTGYITFGKT---DTVNTLRSAFHKRMKKYKKAKGLEDLLDTCY 333
                 F+    +  G       G     DT  +        +   ++A G        +
Sbjct: 187 VQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEF 246

Query: 334 DLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQ 393
           D+       +P +      G    L    +   +     C              LG+V  
Sbjct: 247 DIDCDNLSYMPTVVFEI-NGKMYPLT--PSAYTSQDQGFCTSGFQSENHSQKWILGDVFI 303

Query: 394 RGHEVHYDVAGRRLGFGP 411
           R +   +D A   +G   
Sbjct: 304 REYYSVFDRANNLVGLAK 321

PyMOL of d3cmsa_

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373	Back information, alignment and structure

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329	Back information, alignment and structure

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329	Back information, alignment and structure

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325	Back information, alignment and structure

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381	Back information, alignment and structure

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323	Back information, alignment and structure

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337	Back information, alignment and structure

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387	Back information, alignment and structure

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334	Back information, alignment and structure

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370	Back information, alignment and structure

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324	Back information, alignment and structure

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323	Back information, alignment and structure

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342	Back information, alignment and structure

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337	Back information, alignment and structure

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357	Back information, alignment and structure

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335	Back information, alignment and structure

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		415
d3psga_		370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	100.0
g1htr.1		372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	100.0
d1dpja_		329	Acid protease {Baker's yeast (Saccharomyces cerevi	100.0
d1am5a_		324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	100.0
d2apra_		325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	100.0
g1lya.1		338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1miqa_		373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1smra_		335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	100.0
d1j71a_		334	Acid protease {Yeast (Candida tropicalis) [TaxId:	100.0
d1oewa_		330	Endothiapepsin {Chestnut blight fungus (Endothia p	100.0
d2bjua1		329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	100.0
d1qdma2		337	Plant acid proteinase, phytepsin {Barley (Hordeum	100.0
d1hrna_		337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	100.0
d3cmsa_		323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	100.0
d1eaga_		342	Acid protease {Yeast (Candida albicans) [TaxId: 54	100.0
g1b5f.1		326	Plant acid proteinase, phytepsin {Cynara carduncul	100.0
d1bxoa_		323	Acid protease {Fungus (Penicillium janthinellum),	100.0
d1t6ex_		381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	100.0
d1izea_		323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	100.0
d2qp8a1		387	beta-secretase (memapsin) {Human (Homo sapiens) [T	100.0
d1mppa_		357	Pepsin {Mucor pusillus [TaxId: 4840]}	100.0
d1wkra_		340	Acid protease {Irpex lacteus (Polyporus tulipifera	100.0

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.4e-44  Score=358.81  Aligned_cols=288  Identities=22%  Similarity=0.310  Sum_probs=211.2

Q ss_pred             CHHHHHHHhHHHHHhhhcccccCCCCcc--ccCCcceeeeeecCCCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecC
Q 014995           84 SLEEILRQDQQRLHLKNSRRLRKPFPEF--LKRTEAFTFPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCK  161 (415)
Q Consensus        84 ~~~~~~~~d~~R~~~l~~rr~~~~~~~~--~~~~~~~~~p~~~~~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~  161 (415)
                      ++.+.+.++..+.++++. |........  .........|+  .++.+.+|+++|.||||||++.|++||||+++||+|.
T Consensus        11 ~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l--~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~   87 (370)
T d3psga_          11 SLRQNLIKDGKLKDFLKT-HKHNPASKYFPEAAALIGDEPL--ENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV   87 (370)
T ss_dssp             CHHHHHHHTTCHHHHHHH-CCCCGGGGTCTTSCCSSCCCTT--GGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred             cHHHHHHHcCcHHHHHHh-cccchhhhhcccccCccccccc--ccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECc
Confidence            367877777777777665 321100000  01111222343  3445689999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCcee
Q 014995          162 PCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYF  241 (415)
Q Consensus       162 ~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v  241 (415)
                      +|..|..+..+.|||++|+||+...                      |.|.+.|++|+ +.|.++.|++++++..    +
T Consensus        88 ~C~~~~~~~~~~yd~~~Sst~~~~~----------------------~~~~~~Yg~Gs-~~G~~~~d~~~~~~~~----~  140 (370)
T d3psga_          88 YCSSLACSDHNQFNPDDSSTFEATS----------------------QELSITYGTGS-MTGILGYDTVQVGGIS----D  140 (370)
T ss_dssp             TCCSGGGTTSCCBCGGGCTTCEEEE----------------------EEEEEESSSCE-EEEEEEEEEEEETTEE----E
T ss_pred             cCCCcccccccccCCCcccccccCC----------------------CcEEEEeCCce-EEEEEEEEEEeeecee----e
Confidence            9999888889999999999999864                      78999999997 7899999999998876    7


Q ss_pred             eecCeEEEEEEcCCCCC---CCCCcccccCCCCce------e----ecccccc--eEEEEcCCCCCCceEEEECCC----
Q 014995          242 TRYPFLLGCINNSSGDK---SGASGIMGLDRSPVS------I----ITRTNTS--YFSYCLPSPYGSTGYITFGKT----  302 (415)
Q Consensus       242 ~~~~~~FGc~~~~~g~f---~~~~GIlGLG~~~~S------l----~sQl~~~--~FSycL~~~~~~~G~L~fG~t----  302 (415)
                      +  ++.|||+....+.+   ...+||+|||+...+      +    ..|....  .||+|+......+|.|+|||.    
T Consensus       141 ~--~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~  218 (370)
T d3psga_         141 T--NQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSY  218 (370)
T ss_dssp             E--EEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGG
T ss_pred             e--eeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchh
Confidence            7  99999999887743   368999999987654      2    2232222  299999987767899999983    


Q ss_pred             ------------------------------------------cCh-----hhHHHHHHHHHhhccccCCCCCCCcceeec
Q 014995          303 ------------------------------------------DTV-----NTLRSAFHKRMKKYKKAKGLEDLLDTCYDL  335 (415)
Q Consensus       303 ------------------------------------------GTv-----~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~  335 (415)
                                                                ||.     ..+.+++.+++.....       .+.+|.+
T Consensus       219 ~~~~l~~~p~~~~~~w~v~~~~i~v~g~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~-------~~~~~~~  291 (370)
T d3psga_         219 YTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-------SDGEMVI  291 (370)
T ss_dssp             BSSCCEEEECSEETTEEEEECEEESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC-------TTCCEEC
T ss_pred             cccceeEEeecccceEEEEEeeEEeCCeEEecCCCccEEEecCCceEeCCHHHHHHHHHHhCCeee-------cCCcEEE
Confidence                                                      333     4444445544432211       1234555


Q ss_pred             cCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEE-EEEecC---CCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995          336 SAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP  411 (415)
Q Consensus       336 ~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cl-a~~~~~---~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~  411 (415)
                      +|.....+|+|+|+| ||++++|++++|+++.+  ..|+ +|....   ...+.||||+.|||++|++||++++||||||
T Consensus       292 ~C~~~~~~P~l~f~f-~g~~~~l~~~~yi~~~~--~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp  368 (370)
T d3psga_         292 SCSSIDSLPDIVFTI-DGVQYPLSPSAYILQDD--DSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP  368 (370)
T ss_dssp             CGGGGGGCCCEEEEE-TTEEEEECHHHHEEECS--SCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             eccccCCCceEEEEE-CCEEEEEChHHeEEEcC--CeEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEe
Confidence            565556789999999 79999999999998753  3474 665432   2346799999999999999999999999999


Q ss_pred             CC
Q 014995          412 GN  413 (415)
Q Consensus       412 ~~  413 (415)
                      ++
T Consensus       369 ~a  370 (370)
T d3psga_         369 VA  370 (370)
T ss_dssp             BC
T ss_pred             cC
Confidence            74

PyMOL of d3psga_

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}	Back information, alignment and structure

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}	Back information, alignment and structure

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}	Back information, alignment and structure

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}	Back information, alignment and structure

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}	Back information, alignment and structure

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}	Back information, alignment and structure

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}	Back information, alignment and structure

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}	Back information, alignment and structure

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}	Back information, alignment and structure

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}	Back information, alignment and structure

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}	Back information, alignment and structure

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}	Back information, alignment and structure