Citrus Sinensis ID: 015001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHccccHHHHHHHHHHcccHHHHccccccEEEcccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccEEEEEEcEEEcccccccccccccEEEEEEEEEEHHHHHHHHHccccccEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEEccEEEEEccccccccccccccccHHHHHHHcccccccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEccccccEEEccccccccccccccccEEEEEEccEEEEEEEEEEHHHHHHHHHHcccEEEEEEEEcEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccccccccHEEEcccEEEEEEEcEEccccccccccHHHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEccccEEEEEEcccccccccccccccccHHHEEcccccccccEEEccccccEEEEEEccccccEcccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MMRIGVLEvdgistlpepilhhilsflpFKEVAQTCLLSKRWKQVWQtfpdvevggmftnprksKEILTSLEPALLNRQRKMISIKKFSLEldlinspenaslAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYcklqqpsenvklfSLRKLALREVCADDQAIASLIsgcplieyleirsceglesldlvnlsnLKEIILVNTSDIKRVEIKTSNVNALAIHQtylfpievnvsscgnlkclkfdflpiedewlcngisklplleylsmtkchkltsvrisspclKTLILECCDKLIQVeietpnlsifkyhgdlisfssnalslsetslcfsshlMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ
Flexible Loop (DISEMBL)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTfpdvevggmftnprkskeiLTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIlvntsdikrveIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ
Low Complexity Region (SEG)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ
Disordered region (IsUnstruct)
***IGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRK*KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWY*
Disordered Region (DISOPRED)
***********ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ
Disordered Region (DISEMBL)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ
Disordered Region (DISPRO)
*********DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q9LZ15	456	Putative F-box/LRR-repeat	yes	no	0.504	0.458	0.298	2e-16
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.509	0.453	0.297	6e-16
Q1PE04	258	F-box/LRR-repeat protein	no	no	0.439	0.705	0.319	1e-14
Q501G5	307	F-box protein At5g03100 O	no	no	0.444	0.599	0.323	2e-14
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.434	0.394	0.318	4e-14
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.442	0.390	0.291	5e-14
Q3EA38	427	Putative F-box/FBD/LRR-re	no	no	0.442	0.428	0.310	7e-14
Q9C7M1	422	Putative FBD-associated F	no	no	0.579	0.568	0.273	1e-13
Q9SMU0	443	Putative F-box/FBD/LRR-re	no	no	0.427	0.399	0.321	7e-12
Q84W80	481	F-box/LRR-repeat protein	no	no	0.449	0.386	0.305	1e-11

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 32/241 (13%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEV----GGMFTNPRKS 64
            D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++    G M       
Sbjct: 26  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAM------- 78

Query: 65  KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL---VL 121
            + LTS    +         I  F L +DL  +          +  A+   V+ L   V 
Sbjct: 79  NQTLTSYTAPI---------ITSFKLVMDL--NSNTVPQVDSWIEFALSRNVQNLSVFVR 127

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIAS 180
               S+    P+I +   SL +L+++       P+  V   SLR L LR     D++I +
Sbjct: 128 DFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHN 187

Query: 181 LISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY 240
           ++SGCP++E L + +C  LE LDL    NL+ +      DI +   +T  V  +A H  Y
Sbjct: 188 ILSGCPILESLTLDTCRLLERLDLSKSPNLRRL------DINQQYRRTGPVAIVAPHIYY 241

Query: 241 L 241
           L
Sbjct: 242 L 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 85.9 bits (211), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 28/239 (11%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP--DVEVGGMFTNPRKSKE 66
            D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P  D+++    TN     +
Sbjct: 27  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHGETN-----Q 81

Query: 67  ILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL---VLVH 123
            LTS    +         I  F L +DL  +          +  A+   V+ L   V   
Sbjct: 82  TLTSYTAPI---------ITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDF 130

Query: 124 WRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLI 182
             ++    P+I +   SL  L+++       P+  V   SLR L LR     D+++ +++
Sbjct: 131 TYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNIL 190

Query: 183 SGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           SGCP++E L + +C  LE LDL    NL+ +      DI R   +T  +  +A H  YL
Sbjct: 191 SGCPILESLTLDTCRLLERLDLSKSPNLRRL------DINRQYRRTGPIAIVAPHIYYL 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 15/197 (7%)

Query: 10  DGISTLPEPILHHILSFLPFKE-VAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           D IS LP+ ILHHILSF+P    V +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct: 28  DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER 128
            S   + +       S   +S E   ++S          +  A+   V  L L       
Sbjct: 88  ASYTASKITSFHLCTS---YSYEAGHVHS---------SIEFAMSHNVDNLSLAFSSFPP 135

Query: 129 RN-LPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
            N  P+  +   SL  +EL    L  PS  V   SLR L+L      D++   ++SGCP+
Sbjct: 136 CNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPI 194

Query: 188 IEYLEIRSCEGLESLDL 204
           +E L ++ CE L+ LDL
Sbjct: 195 LESLSLKFCESLKYLDL 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q501G5|FB250_ARATH F-box protein At5g03100 OS=Arabidopsis thaliana GN=At5g03100 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 97/210 (46%), Gaps = 26/210 (12%)

Query: 1   MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN 60
           M R G   VD IS+LP+ ILHHIL+  P K   +T +LSKRWK VW   P + +     +
Sbjct: 1   MKRAGG-GVDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVD 59

Query: 61  PRKSKEILTSLEPALLNRQRKMISIKKFSLELDL-INSPENASLAGRCLGLAIESEVKEL 119
           P    + L+S              IK F + +   +  PE        + LA+  + + +
Sbjct: 60  PDSLNKTLSSYSTP---------KIKSFDVTISRDVTVPE----IDTWINLALSRKAENV 106

Query: 120 VL---VHWRSERRNLPEIIFYVESLHVLELS--YCKLQQPSENVKLFSLRKLALREVCAD 174
            L    H+R       +  F   SL  L L+  YC L  P   V   SLR L+L      
Sbjct: 107 SLRFTSHYR-----FRDTFFINSSLKQLSLTLVYCIL-NPKCVVSWSSLRNLSLNRCKVS 160

Query: 175 DQAIASLISGCPLIEYLEIRSCEGLESLDL 204
           D +IA +++GC L+E L +  C+ L  LDL
Sbjct: 161 DDSIAKILTGCSLLESLTLNLCDRLNDLDL 190

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 18/198 (9%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           VD IS+LP+ IL HILSF+P K    T LLSKRW+ VW   P +             E L
Sbjct: 30  VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR--S 126
           T    +      KM+   +F L   LIN   N       +  A+   V  L L  W   +
Sbjct: 90  TRYTAS------KMM---RFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVA 137

Query: 127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCP 186
            +   P+      SL  L +    +   S+ +    L+KL L      D+++A+++ GCP
Sbjct: 138 NKFKFPDFFHINSSLKQLTV----VLDFSDTMIAICLKKLYLSTCLLSDESMANILFGCP 193

Query: 187 LIEYLEIRSCEGLESLDL 204
           ++E L +  C GL  LDL
Sbjct: 194 ILESLTLDHCGGLRVLDL 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 16/199 (8%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           VD IS LP+ +L HI S++P +   +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct: 27  VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKTL 86

Query: 69  TSLEPALLNRQRKMISIKKFSLELDL--INSPENASLAGRCLGLAIESEVKELVLVHWR- 125
            S   +   + +      ++S E D   +NS          +  A+   V +L L   R 
Sbjct: 87  ASYTAS---KIKSFHLCTRYSYEADTHHVNS---------SIEFAMSHNVDDLSLAFRRC 134

Query: 126 SERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC 185
           S   N  +  +   SL  +EL Y  L  P   V   SL+ L+L +    D++   ++SGC
Sbjct: 135 SPFYNFDDCFYTNSSLKRVELRYVDL-MPRCMVSWTSLKNLSLTDCTMSDESFLEILSGC 193

Query: 186 PLIEYLEIRSCEGLESLDL 204
           P++E L ++ C  L+ L+L
Sbjct: 194 PILESLSLKFCMSLKYLNL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EA38|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana GN=At4g13965 PE=4 SV=2

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 5   GVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKS 64
           G++  D IS LPE ++  ILS LP +    T +LSK+W+ +W+  P +    +     + 
Sbjct: 9   GIVNADRISQLPEALIIQILSLLPTEVAVTTSVLSKQWQFLWKMLPKLNFDSL-DQRHEF 67

Query: 65  KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW 124
           K    +++ ALL+ +  ++      + L L NS   A L    +G+A    +++LVL   
Sbjct: 68  KTFSKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKL----IGIAFACNLRKLVL-EV 122

Query: 125 RSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLIS 183
              R ++PE ++  E+L  LEL Y  L     ++ L SLR L L  V   D+++  +L+S
Sbjct: 123 DGGRFSIPESLYNCETLDTLELKYSILMDVPSSICLKSLRTLHLHYVDFKDNESALNLLS 182

Query: 184 GCPLIEYLEI 193
           GCP +E L +
Sbjct: 183 GCPNLENLVV 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7M1|FBD2_ARATH Putative FBD-associated F-box protein At1g55030 OS=Arabidopsis thaliana GN=At1g55030 PE=4 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 125/271 (46%), Gaps = 31/271 (11%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
            D IS LPEP++  IL  LP K    T +LSK+W+  W+  P +E           +  L
Sbjct: 8   TDMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFL-----RRLDL 62

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL-VHWRSE 127
            ++   LL+ +  ++      + LD  N   NA   G  +G+A+   V++LVL V++   
Sbjct: 63  ENVTKCLLSHKAPVLQTFSLKVRLDRRN---NAVDIGCLIGIAMTRNVRKLVLEVYFHRG 119

Query: 128 RRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLISGCP 186
               P  +++ E+L  LEL    +     +V L SL+ L L  V   DD+++ +L+SGCP
Sbjct: 120 TFTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCP 179

Query: 187 LIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV 246
            ++             DLV   N       ++S++K   I   ++  LAIH     P   
Sbjct: 180 NLQ-------------DLVMRRN-------SSSNVKTFTIAVPSLQRLAIHNGSGTPQHC 219

Query: 247 NVS-SCGNLKCLKFDFLPIEDEWLCNGISKL 276
             + +  +LK LK +     + ++   +S+L
Sbjct: 220 GYTINTPSLKYLKLEGSKAFESFMVENVSEL 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMU0|FDL18_ARATH Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana GN=At3g49030 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 13/190 (6%)

Query: 10  DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
           D IS LPE +L  ILS +P + V  T +LSKRW+ +W+  P++     F +P+  +    
Sbjct: 21  DRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTF-DPKYHQTFSE 79

Query: 70  SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW---RS 126
           +L  +L + +  ++     SL+L+     +  ++ G  +  A    V++LVLV +   R 
Sbjct: 80  NLYRSLTSHEASVLE----SLQLNFTRGIDGLNI-GMWIATAYVRHVRKLVLVSFGDVRD 134

Query: 127 ERRNLPEIIF-YVESLHVLEL-SYCKLQQPSENVKLFSLRKLALREVCADDQA-IASLIS 183
           +R      +F + ++L +LE+  Y  L  PS  V L SLR+L L EV   D+A + +L+ 
Sbjct: 135 KRARFRSALFNFNDTLDILEIQDYILLDLPSP-VCLKSLRELRLYEVHFKDEASVCNLLC 193

Query: 184 GCPLIEYLEI 193
           GCP +E L +
Sbjct: 194 GCPSLEVLSV 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 17/203 (8%)

Query: 10  DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
           D IS LP+ IL  ILS+LP +   +T +LS+RW+ VW     +     F   R     + 
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLS----FHRDRPDAPCIN 92

Query: 70  SLEPALLNRQR--KMISIKKFS-LELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS 126
                +L+R R  KM+S +  S      I+ P+  +     +  A+   V+ L L +   
Sbjct: 93  R----ILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDE 147

Query: 127 ERRNLPEIIFYVESLHVLELSY-CKLQ----QPSENVKLFSLRKLALREVCADDQAIASL 181
           ++ ++PE ++   SL  L L + CK       P  +V   SL+ L+L      D++IA +
Sbjct: 148 DKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAII 207

Query: 182 ISGCPLIEYLEIRSCEGLESLDL 204
           +SGCP++E L +  C+ L+ LDL
Sbjct: 208 LSGCPILESLLLFFCKKLKVLDL 230

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.886	0.782	0.369	2e-54
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.886	0.782	0.369	2e-54
224121624	528	predicted protein [Populus trichocarpa]	0.857	0.672	0.311	1e-29
147833276	521	hypothetical protein VITISV_011919 [Viti	0.799	0.635	0.335	7e-29
297743071	552	unnamed protein product [Vitis vinifera]	0.888	0.666	0.329	2e-28
225442254	520	PREDICTED: putative F-box protein At3g44	0.884	0.703	0.330	3e-28
357454743	761	Agglutinin alpha chain [Medicago truncat	0.768	0.417	0.300	3e-26
449458245	575	PREDICTED: uncharacterized protein LOC10	0.806	0.580	0.277	1e-25
449476919	575	PREDICTED: uncharacterized protein LOC10	0.806	0.580	0.274	2e-25
356557323	833	PREDICTED: uncharacterized protein LOC10	0.814	0.404	0.303	3e-25

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 212/382 (55%), Gaps = 15/382 (3%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN-----PRK 63
           +D IS LP+PIL HILSFL  K++ QT +LSKRW  +W TFP  E    F +       K
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL--VL 121
              ++  +E  L    +++  ++KF L  D    P +  +  R +   +ES V+EL  V+
Sbjct: 61  RFHLINFVEQTL----KQLKCLRKFKLHTDF-PEPNSMVVVDRWIDYVLESGVQELEIVV 115

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL 181
                +R NLP+ +F  +SL VL +  CKL    +  KL S++ ++L  V A+D+ +  L
Sbjct: 116 TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRL 175

Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           +S CP I+++++ SC GL +L L   + L  + + N S +     K  N+ A      + 
Sbjct: 176 VSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQ 235

Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
            P  +N+SSC NLK LK   + I D+W     S+ PLLE L+++ CH L S+RISS  LK
Sbjct: 236 -PCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294

Query: 302 TLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEY 361
             IL  C+ + +V+I+TP LS  ++ GD+ISFS NA +LS+  +  S  +  N  WVV+ 
Sbjct: 295 KFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPALSQADIELSPRIFDN-PWVVKQ 353

Query: 362 FEILAMFQKFSKVLNLQCREGE 383
            E LA F    K L LQ + G+
Sbjct: 354 IEFLAHFNHL-KSLTLQSQTGK 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 211/382 (55%), Gaps = 15/382 (3%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN-----PRK 63
           +D IS LP+PIL HILSFL  K++ QT +LSKRW  +W TFP  E    F +       K
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL--VL 121
              ++  +E  L    +++  ++KF L  D    P +  +  R +   +ES V+EL  V+
Sbjct: 61  RFHLINFVEQTL----KQLKCLRKFKLHTDF-PEPNSMVVVDRWIDYVLESGVQELEIVV 115

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL 181
                +R NLP+ +F  +SL VL +  CKL    +  KL S++ ++L  V A+D+ +  L
Sbjct: 116 TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRL 175

Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           +S CP I+++++ SC GL SL L   + L  + + N S +     K  N+ A      + 
Sbjct: 176 VSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQ 235

Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
            P  +N+SSC NLK LK   + I D+W     S+ PLLE L+++ CH L S+RISS  LK
Sbjct: 236 -PCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294

Query: 302 TLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEY 361
             IL  C+ + +V+I+ P LS  ++ GD+ISFS NA +LS+  +  S  +  N  WVV+ 
Sbjct: 295 KFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPALSQADIELSPRIFDN-PWVVKQ 353

Query: 362 FEILAMFQKFSKVLNLQCREGE 383
            E LA F    K L LQ + G+
Sbjct: 354 IEFLAHFNHL-KSLTLQSQTGK 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 203/385 (52%), Gaps = 30/385 (7%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEV-----GGMFTNPRK 63
           +D IS  P+ +LHHILSFLP K+V +T +LSKRWK V  T+P ++       G  ++   
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 64  S-------KEILTS----LEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAI 112
           S       +++LT     ++ ++    +   S++KF L L ++   E +S   + +   I
Sbjct: 61  SENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFL-VLPDLELSSHLDKWVQKVI 119

Query: 113 ESEVKELVL-------VHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLR 164
           E+  KE+         +H++ +  ++P+ IF  +S+ VL+L  C ++ + S  +KL SL+
Sbjct: 120 ENGAKEVDFGIDLPGYLHFK-KPYSMPDAIFAAKSVTVLKLFGCNVKLEESFCIKLHSLQ 178

Query: 165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKR 223
           KLAL+EV  DD  +  +++ CPL+E + +R C GL+ + +  L  LK+  I  + S  + 
Sbjct: 179 KLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPES 238

Query: 224 VEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281
           VEIK+ ++ +     T   + PI V+V +C  LK L      + +  L + + K  +LE 
Sbjct: 239 VEIKSPSLESFHCSFTVRSVKPI-VSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLES 297

Query: 282 LSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS 341
           L +  C  L  V+ISS  LK+L +  C+ ++ +EI TPNL   KY G ++  S       
Sbjct: 298 LRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLINAPSC 357

Query: 342 ETSLCFSSHLMVNIEWVVEYFEILA 366
              + FS    ++I W +   E LA
Sbjct: 358 HWQVEFSLMNTLDILWYMTLKEFLA 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 189/352 (53%), Gaps = 21/352 (5%)

Query: 8   EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP------ 61
           E D IS LP+ IL  IL  LP K+VA++ LLS+ W+++           MF  P      
Sbjct: 4   EQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFS--SLSLLMFQCPDFLESC 61

Query: 62  RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKE 118
           RK+ ++   + +++ +L  R  K +++ +  L LDL +  E+ SL    +  A+E +VKE
Sbjct: 62  RKNTDVSSFINAIDSSLRLRP-KDVNLARLRLHLDL-DDIESESLIDSWIDAALERKVKE 119

Query: 119 LVL-VHWRS--ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADD 175
           L L +  RS  +   LP  IF   ++ VL L  C+L+    ++ L +LRKL LR++  D+
Sbjct: 120 LDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEI-CGDIDLPALRKLCLRQIRCDE 178

Query: 176 QAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALA 235
           QAI  LIS CPLIE L+I SC GL+ L +  L+NL  + ++   +++R+EI   ++  L 
Sbjct: 179 QAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYNLRRIEIDAPSLQHLV 238

Query: 236 IHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI 295
            H   L P ++ ++ C  L+ L      I +++L N  S  P LE L +    +L  + I
Sbjct: 239 YHCGRL-PCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLERLEIDST-RLQRIEI 296

Query: 296 SSPCLKTLILECC--DKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSL 345
           S   LK L L+     K  +++I+ PNL  F Y G  +  +S   S++ +SL
Sbjct: 297 SHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTISSMNTSSL 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 200/389 (51%), Gaps = 21/389 (5%)

Query: 4   IGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP-- 61
           + V E D IS LP+ IL  ILS LP KE+A+T LLSK W+++   F  + V  MF +P  
Sbjct: 32  VMVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKL-SPFSSLSVL-MFQSPDF 89

Query: 62  ----RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIES 114
               RK+ ++   + +++ +L  RQ K +S+ +  L L L N  E+ SL    +  A+E 
Sbjct: 90  FHSRRKNFDVSSFINAIDSSLRLRQ-KDVSLARLQLRLHL-NDIESESLIDSWIDAALER 147

Query: 115 EVKEL---VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV 171
           +VKEL   +L     E   LP  IF   ++ VL L  C+L+    +V L +LRKL LR++
Sbjct: 148 KVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEI-CGDVDLPALRKLCLRKI 206

Query: 172 CADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNV 231
             D+QAI  LIS CPLIE L+I SC  L+ L +  L+NL  +++    +++R+EI   ++
Sbjct: 207 LCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSL 266

Query: 232 NALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
                        +V  +    L+ L      I ++ L N +S +P LE L +    +L 
Sbjct: 267 QYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQ 325

Query: 292 SVRISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
            + IS   LK L L   +  +  +++I+ PNL  F Y G  +  +S   S++ +SL  + 
Sbjct: 326 RIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLREAE 385

Query: 350 HLMVNIEWVVEYFEILAMFQKFSKVLNLQ 378
               N      +F IL + + F K  N Q
Sbjct: 386 IHFRNCNDYSHFF-ILQLKEFFEKSKNCQ 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 199/387 (51%), Gaps = 21/387 (5%)

Query: 6   VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP---- 61
           V E D IS LP+ IL  ILS LP KE+A+T LLSK W+++   F  + V  MF +P    
Sbjct: 2   VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKL-SPFSSLSVL-MFQSPDFFH 59

Query: 62  --RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEV 116
             RK+ ++   + +++ +L  RQ K +S+ +  L L L N  E+ SL    +  A+E +V
Sbjct: 60  SRRKNFDVSSFINAIDSSLRLRQ-KDVSLARLQLRLHL-NDIESESLIDSWIDAALERKV 117

Query: 117 KEL---VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA 173
           KEL   +L     E   LP  IF   ++ VL L  C+L+    +V L +LRKL LR++  
Sbjct: 118 KELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEI-CGDVDLPALRKLCLRKILC 176

Query: 174 DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNA 233
           D+QAI  LIS CPLIE L+I SC  L+ L +  L+NL  +++    +++R+EI   ++  
Sbjct: 177 DEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQY 236

Query: 234 LAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293
                      +V  +    L+ L      I ++ L N +S +P LE L +    +L  +
Sbjct: 237 FMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQRI 295

Query: 294 RISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHL 351
            IS   LK L L   +  +  +++I+ PNL  F Y G  +  +S   S++ +SL  +   
Sbjct: 296 EISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLREAEIH 355

Query: 352 MVNIEWVVEYFEILAMFQKFSKVLNLQ 378
             N      +F IL + + F K  N Q
Sbjct: 356 FRNCNDYSHFF-ILQLKEFFEKSKNCQ 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 174/346 (50%), Gaps = 28/346 (8%)

Query: 6   VLEVDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPDV------EVGGMF 58
           V  VD IS LP+ +++HILSFL   ++  +T  LSKRW+ +W ++  +         G+ 
Sbjct: 38  VESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFAAGIG 97

Query: 59  TNPRKSKE------ILTSLEPALLNRQRKMISIKKFSLEL---DLINSPENASLAGRCLG 109
                +KE      +  SL   L N     + I+K  L +   DL ++P    L    L 
Sbjct: 98  PEDGSNKENLFRQHVADSLHTYLANN----LQIQKLLLHMMSFDLTDAP----LVDSWLT 149

Query: 110 LAIESEVKELVL-VHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLA 167
            A+  +++E+ L + ++   R  LPE++   E+L  L LS C L++   N+ L  L+KL 
Sbjct: 150 SAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRR-CGNIMLPRLQKLY 208

Query: 168 LREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIK 227
           LR+V   +Q + +LIS CP IE L    C GL+ L  ++  +L  + + N + +K   I 
Sbjct: 209 LRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFL-YIHCDSLSRLEIHNCNQLKTAYIF 267

Query: 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287
             N++          P +VN+  C +LK L  +   +  ++  N  +K PLLE L +   
Sbjct: 268 APNLDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNKFPLLEKLDLCIA 327

Query: 288 HKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISF 333
            K+ S+ I + CL+ ++L+ C KL  V+I  P L  F+  G+ + +
Sbjct: 328 DKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPY 373

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 175/353 (49%), Gaps = 19/353 (5%)

Query: 9   VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFP----------DVEVGGM 57
           VD IS LPE  +HHILSFL   KE A+T +LSK+W+  W++F             EVG  
Sbjct: 53  VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVG-- 110

Query: 58  FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVK 117
             + ++ ++ + S++ +L +   + + I K  L +    +PE  S   R + +A E+ + 
Sbjct: 111 LNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRI----TPELVSHLKRWVDMAGENGLG 166

Query: 118 EL-VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ 176
           EL + V    +R  +P  +  +++L  L L         E ++  +L+KL LR +  D Q
Sbjct: 167 ELDIHVETTRKRCKVPLCMHSIKTLSGLRLQGL-YWSSFEALEFNNLQKLYLRRLHVDPQ 225

Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236
            I  L+S CPL+  L I  C GL +L +     L+ + L     ++RVE++  ++     
Sbjct: 226 LIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRVELQVPSLKTFWY 285

Query: 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS 296
                   ++N+ SC +LK L  +   + + +    +   P+LE L++++C KL  + I+
Sbjct: 286 CAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQIIGIA 345

Query: 297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
           +  L++L L CC +L  +++++       YHG  +  +   L L E  +   S
Sbjct: 346 NVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGREMVHAFGCLPLKEAKISLVS 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus]

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 19/353 (5%)

Query: 9   VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFP----------DVEVGGM 57
           VD IS LPE  +HHILSFL   KE A+T +LSK+W+  W++F             EVG  
Sbjct: 53  VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVG-- 110

Query: 58  FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVK 117
             + ++ ++ + S++ +L +   + + I K  L +    +PE  S   R + +A E+ + 
Sbjct: 111 LNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRI----TPELVSHLKRWVDMAGENGLG 166

Query: 118 EL-VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ 176
           EL + V    +R  +P  +  +++L  L L         E ++  +L+KL LR +  D Q
Sbjct: 167 ELDIHVETTRKRCKVPLCMHSIKTLSGLRLQGL-YWSSFEALEFNNLQKLYLRRLHVDPQ 225

Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236
            I  L+S CPL+  L I  C GL +L +     L+ + L     ++R+E++  ++     
Sbjct: 226 LIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRIELQVPSLKTFWY 285

Query: 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS 296
                   ++N+ SC +LK L  +   + + +    +   P+LE L++++C KL  + I+
Sbjct: 286 CAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQIIGIA 345

Query: 297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
           +  L++L L CC +L  +++++       YHG  +  +   L L E  +   S
Sbjct: 346 NVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGREMVHAFGCLPLKEAKISLVS 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 174/353 (49%), Gaps = 16/353 (4%)

Query: 9   VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQT-----FPDVEVGGMFTNPR 62
           VD IS  P+ ++HHILS L    +  +T +LSKRW+++W +     F + +      +  
Sbjct: 159 VDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIGHED 218

Query: 63  KSKEIL---TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL 119
            S + +     +  +LL    K + I+K  L +   +  E+A      L +AI   +KEL
Sbjct: 219 SSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIYRNIKEL 278

Query: 120 VLVH---WRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ 176
            L H      E   LP+ +F  ++L  + LS CKL     N+KL  L+KL LR++   + 
Sbjct: 279 DL-HVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGT-CNNIKLPYLQKLYLRKIPLVEN 336

Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236
            I +LIS C  +E L I  C GL+ L + NL  LK   + +   +K+VEI   N++    
Sbjct: 337 FIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQLKKVEISAPNLDTFWY 396

Query: 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT-KCHKLTSVRI 295
                 P +V++  C +LK L  +   +  ++  N  S  PLLE L ++   +K   + I
Sbjct: 397 CGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPLLEKLDLSMSNNKSRFIII 456

Query: 296 SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSS-NALSLSETSLCF 347
           S+P L+   L+ C KL  V +E PNL  F+  G+ + +   +   L++  L F
Sbjct: 457 SNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPWVEIHPFGLTQAKLSF 509

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2151246	258	AT5G02920 "AT5G02920" [Arabido	0.516	0.829	0.3	4.4e-17
TAIR|locus:2143463	307	AT5G03100 "AT5G03100" [Arabido	0.683	0.921	0.295	9.2e-16
TAIR|locus:2151231	458	AT5G02910 "AT5G02910" [Arabido	0.688	0.622	0.272	5e-15
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.512	0.464	0.309	7.3e-15
TAIR|locus:2151261	469	AT5G02930 "AT5G02930" [Arabido	0.524	0.462	0.282	1e-14
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.635	0.576	0.288	2.7e-14
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.512	0.455	0.292	4.9e-14
TAIR|locus:2101308	443	AT3G49030 "AT3G49030" [Arabido	0.444	0.415	0.323	5.5e-14
TAIR|locus:2010950	422	AT1G55030 "AT1G55030" [Arabido	0.485	0.476	0.303	6.2e-14
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.685	0.590	0.259	1.5e-13

TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 69/230 (30%), Positives = 105/230 (45%)

Query:    10 DGISTLPEPILHHILSFLPFKE-VAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             D IS LP+ ILHHILSF+P    V +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct:    28 DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER 128
              S   + +       S   +S E   ++S          +  A+   V  L L       
Sbjct:    88 ASYTASKITSFHLCTS---YSYEAGHVHSS---------IEFAMSHNVDNLSLAFSSFPP 135

Query:   129 RN-LPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
              N  P+  +   SL  +EL    L  PS  V   SLR L+L      D++   ++SGCP+
Sbjct:   136 CNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPI 194

Query:   188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
             +E L ++ CE L+ LDL     L  + +   S   R  +++  + A  IH
Sbjct:   195 LESLSLKFCESLKYLDLSKSLRLTRLEIERRSCF-REPMQSMQIVAPHIH 243

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2143463 AT5G03100 "AT5G03100" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 9.2e-16, P = 9.2e-16
 Identities = 93/315 (29%), Positives = 139/315 (44%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS+LP+ ILHHIL+  P K   +T +LSKRWK VW   P + +     +P    + L
Sbjct:     8 VDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDPDSLNKTL 67

Query:    69 TSLEPALLNRQRKMISIKKFSLELDL-INSPENASLAGRCLGLAIESEVKELVLVHWRSE 127
             +S              IK F + +   +  PE        + LA+ S   E V + + S 
Sbjct:    68 SSYSTP---------KIKSFDVTISRDVTVPE----IDTWINLAL-SRKAENVSLRFTSH 113

Query:   128 RRNLPEIIFYVESLHVLELS--YCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC 185
              R   +  F   SL  L L+  YC L  P   V   SLR L+L      D +IA +++GC
Sbjct:   114 YR-FRDTFFINSSLKQLSLTLVYCILN-PKCVVSWSSLRNLSLNRCKVSDDSIAKILTGC 171

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKRVEIKTSNVNALAIHQTYLFPI 244
              L+E L +  C+ L  LDL    +L+ + IL +    +R  I   ++  L + + Y  P 
Sbjct:   172 SLLESLTLNLCDRLNDLDLSKSLSLRRLEILGDRWTPER--IVAPHIRYLRL-ENYQRPS 228

Query:   245 E-VNVSSC--GNLKCLKFDFLPIEDEWLCN-GISKLPLLEYLSMTKCHKLTSVRISSPCL 300
               V+VSS    NL   K     + D + C      L  +   ++ K   +  + I    L
Sbjct:   229 TLVDVSSLTEANLGLSKH----VLDYFTCEMETESLQYMVRQTVVKLQNIKKLTIGGIFL 284

Query:   301 KTLIL-ECCDKLIQV 314
             + L L E C   + V
Sbjct:   285 QILSLAELCGVTLPV 299

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151231 AT5G02910 "AT5G02910" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
 Identities = 86/316 (27%), Positives = 140/316 (44%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             +D IS+LP+ ILHHILS +P K   +T LLSKRW+ VW   P + +     +P    + L
Sbjct:    10 MDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPSLSIDCRRADPNSIDKTL 69

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVH--WRS 126
             +               I  F L   L+N  +  S+ G C+  AI    ++L L    +R 
Sbjct:    70 SFFSAP---------KITSFHLHTTLLNRID--SVNG-CIEFAISHNAEKLSLESRDYRV 117

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
                  P+  +   S+  L +    +   P   V   SL+ L+L      D++   ++SG 
Sbjct:   118 RNYKFPDFFYTNSSVKQLFVDSGSVHLIPRCTVSWTSLKNLSLSNCTLSDESFLKILSGS 177

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD--IKRVEIKTSNVNALAIHQTYLFP 243
             PL+E LE+  C     LDL    +L+ +  ++ SD  +   +I   +++ L +  + L  
Sbjct:   178 PLLESLELLYCAEYMCLDLSQSQHLRRLE-IDRSDWFMGPTKIVAPHLHCLRLRHSRLPC 236

Query:   244 IEVNVSSC---------GNLKCLKFDFLP---IEDEWLCNGISKLPLL-EYLSMTKCHKL 290
               V+VSS          G+LK +   FL    ++   +   + KL +   +L M     L
Sbjct:   237 SLVDVSSLTEADLNIYFGDLKTVTAGFLQHNVVKMLQMLQNVEKLTIGGTFLQMLSLAAL 296

Query:   291 TSVRISSPCLKTLILE 306
               V   +  +KTL LE
Sbjct:   297 CGVPFPTLKVKTLTLE 312

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 73/236 (30%), Positives = 112/236 (47%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++           + LT
Sbjct:    27 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIT---LKHGAMNQTLT 83

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL-VLVH--WRS 126
             S    +         I  F L +DL NS          +  A+   V+ L V V     S
Sbjct:    84 SYTAPI---------ITSFKLVMDL-NS-NTVPQVDSWIEFALSRNVQNLSVFVRDFTYS 132

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
             +    P+I +   SL +L+++       P+  V   SLR L LR     D++I +++SGC
Sbjct:   133 KTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHNILSGC 192

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             P++E L + +C  LE LDL    NL+ +      DI +   +T  V  +A H  YL
Sbjct:   193 PILESLTLDTCRLLERLDLSKSPNLRRL------DINQQYRRTGPVAIVAPHIYYL 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151261 AT5G02930 "AT5G02930" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 65/230 (28%), Positives = 109/230 (47%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS LP+ +L HI S++P +   +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct:    27 VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKTL 86

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SE 127
              S   + +   +      ++S E D  +   N+S+       A+   V +L L   R S 
Sbjct:    87 ASYTASKI---KSFHLCTRYSYEADTHHV--NSSIE-----FAMSHNVDDLSLAFRRCSP 136

Query:   128 RRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
               N  +  +   SL  +EL Y  L  P   V   SL+ L+L +    D++   ++SGCP+
Sbjct:   137 FYNFDDCFYTNSSLKRVELRYVDLM-PRCMVSWTSLKNLSLTDCTMSDESFLEILSGCPI 195

Query:   188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
             +E L ++ C  L+ L+L     L  + +   S I R  + +  + A  IH
Sbjct:   196 LESLSLKFCMSLKYLNLSKSLRLTRLEIERISYI-RAPMLSMQIVAPYIH 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 84/291 (28%), Positives = 134/291 (46%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS+LP+ IL HILSF+P K    T LLSKRW+ VW   P +             E L
Sbjct:    30 VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR--S 126
             T    +      KM+   +F L   LIN   N       +  A+   V  L L  W   +
Sbjct:    90 TRYTAS------KMM---RFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVA 137

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCP 186
              +   P+  F++ S  + +L+   +   S+ +    L+KL L      D+++A+++ GCP
Sbjct:   138 NKFKFPDF-FHINS-SLKQLTV--VLDFSDTMIAICLKKLYLSTCLLSDESMANILFGCP 193

Query:   187 LIEYLEIRSCEGLESLDLVNLSNLKEI-ILVN--TSDIKRVEIKTSNVNALAIHQTYLFP 243
             ++E L +  C GL  LDL     L+ + I  N    ++  ++I   + + L +  + L  
Sbjct:   194 ILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVAPHTHCLRLRNSKLPC 253

Query:   244 IEVNVSSCGNLK---CLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
               V+VSS    K   C+      I+ ++L   ++ L +LE L   +  KLT
Sbjct:   254 SLVDVSSLKEAKLNICIDSFSKTIKADFL--QVTLLKMLEKLHNVE--KLT 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 69/236 (29%), Positives = 112/236 (47%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++        ++ + LT
Sbjct:    28 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIK---LKHGETNQTLT 84

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL-VLVH--WRS 126
             S    +         I  F L +DL  +          +  A+   V+ L V V     +
Sbjct:    85 SYTAPI---------ITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYT 133

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
             +    P+I +   SL  L+++       P+  V   SLR L LR     D+++ +++SGC
Sbjct:   134 KTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGC 193

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             P++E L + +C  LE LDL    NL+ +      DI R   +T  +  +A H  YL
Sbjct:   194 PILESLTLDTCRLLERLDLSKSPNLRRL------DINRQYRRTGPIAIVAPHIYYL 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101308 AT3G49030 "AT3G49030" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 64/198 (32%), Positives = 106/198 (53%)

Query:     2 MRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP 61
             +R  V E D IS LPE +L  ILS +P + V  T +LSKRW+ +W+  P++     F +P
Sbjct:    14 IRDAVKE-DRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTF-DP 71

Query:    62 RKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL 121
             +  +    +L  +L + +  ++     SL+L+     +  ++ G  +  A    V++LVL
Sbjct:    72 KYHQTFSENLYRSLTSHEASVLE----SLQLNFTRGIDGLNI-GMWIATAYVRHVRKLVL 126

Query:   122 VHW---RSERRNLPEIIF-YVESLHVLELS-YCKLQQPSENVKLFSLRKLALREVCADDQ 176
             V +   R +R      +F + ++L +LE+  Y  L  PS  V L SLR+L L EV   D+
Sbjct:   127 VSFGDVRDKRARFRSALFNFNDTLDILEIQDYILLDLPSP-VCLKSLRELRLYEVHFKDE 185

Query:   177 A-IASLISGCPLIEYLEI 193
             A + +L+ GCP +E L +
Sbjct:   186 ASVCNLLCGCPSLEVLSV 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010950 AT1G55030 "AT1G55030" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 65/214 (30%), Positives = 112/214 (52%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D IS LPEP++  IL  LP K    T +LSK+W+  W+  P +E        R   E +T
Sbjct:     9 DMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFLR--RLDLENVT 66

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL-VHWRSER 128
                  LL+ +  ++  + FSL++ L +   NA   G  +G+A+   V++LVL V++    
Sbjct:    67 K---CLLSHKAPVL--QTFSLKVRL-DRRNNAVDIGCLIGIAMTRNVRKLVLEVYFHRGT 120

Query:   129 RNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLISGCPL 187
                P  +++ E+L  LEL    +     +V L SL+ L L  V   DD+++ +L+SGCP 
Sbjct:   121 FTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPN 180

Query:   188 IEYLEIR--SCEGLESLDLVNLSNLKEIILVNTS 219
             ++ L +R  S   +++  +  + +L+ + + N S
Sbjct:   181 LQDLVMRRNSSSNVKTFTIA-VPSLQRLAIHNGS 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 79/304 (25%), Positives = 138/304 (45%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D IS LP+ IL  ILS+LP +   +T +LS+RW+ VW     +     F   R     + 
Sbjct:    37 DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLS----FHRDRPDAPCIN 92

Query:    70 SLEPALLNRQR--KMISIKKFSL-ELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS 126
              +    L+R R  KM+S +  S      I+ P+  +     +  A+   V+ L L +   
Sbjct:    93 RI----LDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDE 147

Query:   127 ERRNLPEIIFYVESLHVLELSY-CKLQ----QPSENVKLFSLRKLALREVCADDQAIASL 181
             ++ ++PE ++   SL  L L + CK       P  +V   SL+ L+L      D++IA +
Sbjct:   148 DKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAII 207

Query:   182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             +SGCP++E L +  C+ L+ LDL     L  + +     ++  ++   ++  L +  +  
Sbjct:   208 LSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAPHIRCLRLINSEK 267

Query:   242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
                 V+VSS    + L      I D  L     +  +++ L   KC  +  + + +  LK
Sbjct:   268 PCALVDVSSLSQAE-LDITAYAIVDNKLEADFHQTMVVKMLE--KCQNVEKLTLGANFLK 324

Query:   302 TLIL 305
              L L
Sbjct:   325 MLSL 328

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
pfam00646	48	pfam00646, F-box, F-box domain	8e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP 50
          +  LP+ +L  ILS L  K++ +  L+SKRW+ +  +  
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLK 41

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
          +S LP+ IL  I S+L  +++ +  L+ +RW+++
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.79
KOG4341	483	consensus F-box protein containing LRR [General fu	99.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.44
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.38
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.36
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.19
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.01
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.96
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.87
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.69
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.65
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.6
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.58
KOG4341	483	consensus F-box protein containing LRR [General fu	98.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.42
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.33
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.31
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.12
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.01
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.0
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.99
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.45
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.32
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.22
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.08
PRK15386	426	type III secretion protein GogB; Provisional	97.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.82
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.51
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.45
PRK15386	426	type III secretion protein GogB; Provisional	96.41
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.11
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.06
PLN03150	623	hypothetical protein; Provisional	95.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.86
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.81
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.72
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.3
PLN03150	623	hypothetical protein; Provisional	95.27
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.77
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	94.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.92
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.88
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	92.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.3
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	89.19
PF13013	109	F-box-like_2: F-box-like domain	83.51
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.2
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	81.65
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	80.24

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=4.4e-21  Score=166.70  Aligned_cols=259  Identities=22%  Similarity=0.272  Sum_probs=168.8

Q ss_pred             CCCCCHHHHHHHhccCChHHHHHhhhcccCchhh------ccccceeeeeccccCCCchhhHHHHHHHHHhccccCCCCe
Q 015001           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISI   85 (414)
Q Consensus        12 i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~l------w~~~~~l~~~~~~~~~~~~~~f~~~v~~~l~~~~~~~~~l   85 (414)
                      +..|||||+..||+.|+.+|+++.+.|||||+.+      |..+   +..+.-.       -.....+.+      .+.+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i-------~p~~l~~l~------~rgV  161 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNI-------HPDVLGRLL------SRGV  161 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCcc-------ChhHHHHHH------hCCe
Confidence            7899999999999999999999999999999875      5442   2221111       012333333      2355


Q ss_pred             eeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCccc
Q 015001           86 KKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSL  163 (414)
Q Consensus        86 ~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L  163 (414)
                      ..|++--..    .....+... ...+..+++++|+++.......+...+..|..|+.|++.|..++.+  ...+.=.+|
T Consensus       162 ~v~Rlar~~----~~~prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L  236 (419)
T KOG2120|consen  162 IVFRLARSF----MDQPRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL  236 (419)
T ss_pred             EEEEcchhh----hcCchhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence            555543111    111111111 1123347999999986666666777778899999999999988776  445556789


Q ss_pred             ceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCccee---ecCC-CCCCceEEEeec-CCCceEeeeccceeeeEee
Q 015001          164 RKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVN-LSNLKEIILVNT-SDIKRVEIKTSNVNALAIH  237 (414)
Q Consensus       164 ~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~-l~~L~~L~l~~~-~~l~~~~~~~p~L~~L~l~  237 (414)
                      +.|+|+.+.. +..++.-++++|..|.+|+|+.|......   .+.+ .++|+.|++++| .++..              
T Consensus       237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~--------------  302 (419)
T KOG2120|consen  237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK--------------  302 (419)
T ss_pred             eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh--------------
Confidence            9999999886 88889999999999999999999766432   1111 277888888877 11110              


Q ss_pred             eecccceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEeccccccccc--cc--ccccccceEEeeccCC
Q 015001          238 QTYLFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTS--VR--ISSPCLKTLILECCDK  310 (414)
Q Consensus       238 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~--l~--~~~~~L~~L~l~~c~~  310 (414)
                          ..+......||+|.+||++.+- +.+ .....+..|+.|++|.++.|..+..  +.  ...|.|.+|++.+|-.
T Consensus       303 ----sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  303 ----SHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ----hHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence                0011223456666667766444 333 4444567788888888888754432  11  2677888888877654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.64  E-value=8.9e-18  Score=152.58  Aligned_cols=319  Identities=18%  Similarity=0.216  Sum_probs=163.8

Q ss_pred             CCCHHHHHHHhccCChHHHHHhhhcccCchhh------ccccceeeeeccccCCCchhhHHHHHHHHHhccccCCCCeee
Q 015001           14 TLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK   87 (414)
Q Consensus        14 ~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~l------w~~~~~l~~~~~~~~~~~~~~f~~~v~~~l~~~~~~~~~l~~   87 (414)
                      .||.|++.+|||||+++.+.+++++|+-|.-+      |.++....|..+..+        ..|...+   ++-+..++.
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------~VV~~~~---~Rcgg~lk~  142 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------GVVENMI---SRCGGFLKE  142 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC--------cceehHh---hhhcccccc
Confidence            69999999999999999999999999999864      777666666544332        2222222   112245555


Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCC-ccccCCccccCCCcccEEEecCcccCCC----CccccCcc
Q 015001           88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFS  162 (414)
Q Consensus        88 l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~  162 (414)
                      ++++...+   .....+.....  .-+++++|.+..+.. ....+......|.+|++|++..|..-+.    .....|++
T Consensus       143 LSlrG~r~---v~~sslrt~~~--~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  143 LSLRGCRA---VGDSSLRTFAS--NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccc---CCcchhhHHhh--hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            55554332   11111111110  113444444433221 0111111122245555555554422111    12334455


Q ss_pred             cceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcce--e-ec-CCCCCCceEEEeecCCCceEe-----eecccee
Q 015001          163 LRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLES--L-DL-VNLSNLKEIILVNTSDIKRVE-----IKTSNVN  232 (414)
Q Consensus       163 L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~--l-~i-~~l~~L~~L~l~~~~~l~~~~-----~~~p~L~  232 (414)
                      |++|+++.|.. ....++.+..+|..++++.+.+|...+.  + .+ ..++-+.++++..|..+....     -.+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            55555555443 3334444444555555554444433311  0 00 012333344433442222221     1345566


Q ss_pred             eeEeeeecc---cceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEecccccc-----cccccccccccceE
Q 015001          233 ALAIHQTYL---FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHK-----LTSVRISSPCLKTL  303 (414)
Q Consensus       233 ~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~-----~~~l~~~~~~L~~L  303 (414)
                      .++++++..   .++..-..++++|+.|.+..+. +++..+..+-.+++.|+.|++..|..     +..+...++.|+.|
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            666665541   1111123456777777776555 55555666667777777777777632     23344577888888


Q ss_pred             EeeccCCceEe-----e---ccCCCeeeEEEeCcee------EEeccCCccceEEEEee
Q 015001          304 ILECCDKLIQV-----E---IETPNLSIFKYHGDLI------SFSSNALSLSETSLCFS  348 (414)
Q Consensus       304 ~l~~c~~l~~~-----~---~~~p~L~~l~~~~~~~------~~~~~~~~L~~L~l~~~  348 (414)
                      .+++|..+.+.     .   -....+..+++.+++.      ..+.++++||.+++.-.
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            88877765432     1   1123356666666655      45666788888777544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.44  E-value=2e-13  Score=146.94  Aligned_cols=172  Identities=16%  Similarity=0.192  Sum_probs=89.8

Q ss_pred             hCCCeEEEEEecCCccccCCcccc-CCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      .++++.|++..+. -...+|..++ .+++|++|++++|.+........+++|++|+|++|.++.. +...+.++++|++|
T Consensus        92 l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L  169 (968)
T PLN00113         92 LPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence            3577777776532 1225666555 6777888888777664333334567777777777765322 22224566777777


Q ss_pred             EeeccCCccee--ecCCCCCCceEEEeecCCCceEe---eeccceeeeEeeeec-ccceeeeccccccCceeEeeccCCc
Q 015001          192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE  265 (414)
Q Consensus       192 ~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~  265 (414)
                      ++++|.....+  .+..+++|+.|++++|.-...++   ..+++|+.|+++++. ....+..++++++|++|++.++.+.
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            77766433221  23445666666666652111111   134555555555544 2222334455555555555555443


Q ss_pred             hHHHHhhhccCCCCcEEecccc
Q 015001          266 DEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       266 ~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      +. ++..+..+++|+.|+++++
T Consensus       250 ~~-~p~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        250 GP-IPSSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             cc-cChhHhCCCCCCEEECcCC
Confidence            21 2222344455555555443

>PLN03210 Resistant to P

Probab=99.38  E-value=1.8e-12  Score=140.57  Aligned_cols=211  Identities=23%  Similarity=0.236  Sum_probs=100.8

Q ss_pred             ccCCCcccEEEecCcc-cCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecC-CCCCCce
Q 015001          135 IFYVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKE  212 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~-~l~~L~~  212 (414)
                      +..+++|+.|+++++. +...+....+++|++|+|.+|... ..+...+..+++|+.|.+.+|..+..+... .+++|+.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~  708 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR  708 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence            3334444444444432 111123334455555555544321 111222344555555555555444333211 3455555


Q ss_pred             EEEeecCCCceEeeeccceeeeEeeeecccceeeec------------------------------cccccCceeEeecc
Q 015001          213 IILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNV------------------------------SSCGNLKCLKFDFL  262 (414)
Q Consensus       213 L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~------------------------------~~~~~L~~L~l~~~  262 (414)
                      |++++|..+..++...++|++|+++++....++..+                              ..+++|+.|+++++
T Consensus       709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            555555444433333345555555544311111110                              01235555555544


Q ss_pred             CCchHHHHhhhccCCCCcEEecccccccccccc--cccccceEEeeccCCceEeeccCCCeeeEEEeCcee----EEecc
Q 015001          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSN  336 (414)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~--~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~----~~~~~  336 (414)
                      ..... ++..+.++++|+.|++++|..++.++.  .+++|+.|++++|..+..++...++|+.|.+.++..    ..+.+
T Consensus       789 ~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~  867 (1153)
T PLN03210        789 PSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK  867 (1153)
T ss_pred             CCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc
Confidence            32221 233356677788888888776666654  467778888887776655443334555555554433    23344


Q ss_pred             CCccceEEEEe
Q 015001          337 ALSLSETSLCF  347 (414)
Q Consensus       337 ~~~L~~L~l~~  347 (414)
                      +++|+.|+++.
T Consensus       868 l~~L~~L~L~~  878 (1153)
T PLN03210        868 FSNLSFLDMNG  878 (1153)
T ss_pred             CCCCCEEECCC
Confidence            45555555543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.36  E-value=1.5e-12  Score=140.32  Aligned_cols=81  Identities=21%  Similarity=0.151  Sum_probs=37.8

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccC--CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      +++++|++..+.. ...+|..+..+++|++|++++|.+.  .|.....+++|++|+|++|.+.... ...+..+++|+.|
T Consensus       140 ~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L  217 (968)
T PLN00113        140 PNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWI  217 (968)
T ss_pred             CCCCEEECcCCcc-cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEE
Confidence            4566666654211 1234445555566666666655442  1233445555555555555442111 1123444555555


Q ss_pred             Eeecc
Q 015001          192 EIRSC  196 (414)
Q Consensus       192 ~l~~c  196 (414)
                      ++.+|
T Consensus       218 ~L~~n  222 (968)
T PLN00113        218 YLGYN  222 (968)
T ss_pred             ECcCC
Confidence            55444

>PLN03210 Resistant to P

Probab=99.19  E-value=6.2e-11  Score=128.73  Aligned_cols=206  Identities=19%  Similarity=0.222  Sum_probs=138.0

Q ss_pred             CCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceE
Q 015001          137 YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEI  213 (414)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L  213 (414)
                      ...+|++|++.++.+... .....+++|+.|+|+++.... .+.. ++.+++|++|.+.+|..+..+  .+..+++|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            356788888887766432 445678888888888764311 1111 567889999999998776544  45567899999


Q ss_pred             EEeecCCCceEee--eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh--------------------
Q 015001          214 ILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN--------------------  271 (414)
Q Consensus       214 ~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------  271 (414)
                      ++++|..+..++.  .+++|++|.+++|.....  .....++|+.|++.++.+..  ++.                    
T Consensus       687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~--~p~~~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKS--FPDISTNISWLDLDETAIEE--FPSNLRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccc--cccccCCcCeeecCCCcccc--ccccccccccccccccccchhhc
Confidence            9999866666554  578899999988762110  01123578888887666432  110                    


Q ss_pred             ----------hhccCCCCcEEecccccccccccc---cccccceEEeeccCCceEeec--cCCCeeeEEEeCcee--EEe
Q 015001          272 ----------GISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEI--ETPNLSIFKYHGDLI--SFS  334 (414)
Q Consensus       272 ----------~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~~~--~~p~L~~l~~~~~~~--~~~  334 (414)
                                ....+++|+.|++++|.....++.   .+++|+.|++++|..++.++.  ..++|++|.+.++..  .+-
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence                      011235788888888766655553   678899999999988877753  457788888888755  222


Q ss_pred             ccCCccceEEEEee
Q 015001          335 SNALSLSETSLCFS  348 (414)
Q Consensus       335 ~~~~~L~~L~l~~~  348 (414)
                      ...++|+.|+++.+
T Consensus       843 ~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        843 DISTNISDLNLSRT  856 (1153)
T ss_pred             ccccccCEeECCCC
Confidence            33468899988766

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.15  E-value=5.6e-12  Score=119.69  Aligned_cols=229  Identities=18%  Similarity=0.139  Sum_probs=121.6

Q ss_pred             CCCeEEEEEecCCccccCCcccc-CCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +-++.+||+...  ..++|...+ .-.++++|+|+++.+...  ..+..+.+|.+|.|++|.++.- ....+.++|.|+.
T Consensus       149 ~alrslDLSrN~--is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  149 PALRSLDLSRNL--ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLES  225 (873)
T ss_pred             hhhhhhhhhhch--hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhh
Confidence            466777776532  223333223 336788888888877554  5566777888888888877322 2233566788888


Q ss_pred             EEeeccCCc--ceeecCCCCCCceEEEeecCCCceE----eeeccceeeeEe------------------------eeec
Q 015001          191 LEIRSCEGL--ESLDLVNLSNLKEIILVNTSDIKRV----EIKTSNVNALAI------------------------HQTY  240 (414)
Q Consensus       191 L~l~~c~~~--~~l~i~~l~~L~~L~l~~~~~l~~~----~~~~p~L~~L~l------------------------~~~~  240 (414)
                      |+|..|.--  +.+.+.++++|+.|.+..+ ++..+    ...+.+++.|++                        +.+.
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na  304 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA  304 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence            888776422  2234455666666666555 11111    112344444444                        4433


Q ss_pred             cccee-eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc----cccccccceEEeeccCCceEe-
Q 015001          241 LFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTLILECCDKLIQV-  314 (414)
Q Consensus       241 ~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l----~~~~~~L~~L~l~~c~~l~~~-  314 (414)
                      ...+. .....+++|+.|+++++.+..-.-. .+..+..|+.|.|+.. .+..+    .....+|+.|++..+....-+ 
T Consensus       305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~-sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEG-SFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             hheeecchhhhcccceeEeccccccccCChh-HHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence            11111 1233455566666655554431111 1233444555555542 11111    124566666666665443222 


Q ss_pred             -----eccCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001          315 -----EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS  348 (414)
Q Consensus       315 -----~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~  348 (414)
                           ..+.|.|++|.+.|+..     ..+...++||+|++..|
T Consensus       383 Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  383 DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence                 23456677777777765     45566677777777655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.5e-11  Score=113.07  Aligned_cols=193  Identities=16%  Similarity=0.144  Sum_probs=137.1

Q ss_pred             CCCcccEEEecCcccCCCC---ccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcc---eeecCCCCC
Q 015001          137 YVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLE---SLDLVNLSN  209 (414)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~---~l~i~~l~~  209 (414)
                      +.++|+...|.++.+..+.   ....||+++.|+|+++-+ ....+..++..+|+||.|.|+.|....   ......++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3577888888888776553   577899999999999988 667788899999999999999885542   112224689


Q ss_pred             CceEEEeec----CCCceEeeeccceeeeEeeeec-ccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001          210 LKEIILVNT----SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (414)
Q Consensus       210 L~~L~l~~~----~~l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  284 (414)
                      |+.|.++.|    ..+..+...+|+|+.|++.++. ..........+..|++|+|+++.+.+.+.......+|.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            999999999    2334455689999999999884 11122334557799999999888766544445788999999999


Q ss_pred             ccccc--cc-------cccccccccceEEeeccCC--ceEe--eccCCCeeeEEEeCc
Q 015001          285 TKCHK--LT-------SVRISSPCLKTLILECCDK--LIQV--EIETPNLSIFKYHGD  329 (414)
Q Consensus       285 ~~c~~--~~-------~l~~~~~~L~~L~l~~c~~--l~~~--~~~~p~L~~l~~~~~  329 (414)
                      +.|..  +.       .....+|+|+.|++..+..  ..++  ....++|+.+.+.+.
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            98621  11       1123689999999988765  2222  123356666655544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.02  E-value=8e-11  Score=110.45  Aligned_cols=172  Identities=18%  Similarity=0.182  Sum_probs=91.2

Q ss_pred             CCCeEEEEEecCC---ccccCCccccCCCcccEEEecCcccCC--C------CccccCcccceeEeeEEEcCh---HHHH
Q 015001          114 SEVKELVLVHWRS---ERRNLPEIIFYVESLHVLELSYCKLQQ--P------SENVKLFSLRKLALREVCADD---QAIA  179 (414)
Q Consensus       114 ~~l~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~~~~--~------~~~~~l~~L~~L~L~~~~~~~---~~l~  179 (414)
                      .+++++++..+..   ....++..+...++|++|+++++.+..  .      .....+++|+.|+++++.+..   ..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            3588888877443   122355555566778888888776542  1      223446688888888777632   2233


Q ss_pred             HHHhCCCcccEEEeeccCCcc----ee--ecCCC-CCCceEEEeecCCCc-----eEe---eeccceeeeEeeeecccc-
Q 015001          180 SLISGCPLIEYLEIRSCEGLE----SL--DLVNL-SNLKEIILVNTSDIK-----RVE---IKTSNVNALAIHQTYLFP-  243 (414)
Q Consensus       180 ~ll~~~p~Le~L~l~~c~~~~----~l--~i~~l-~~L~~L~l~~~~~l~-----~~~---~~~p~L~~L~l~~~~~~~-  243 (414)
                      .+..+ ++|++|++++|....    .+  .+..+ ++|+.|++++| .+.     .+.   ..+++|++|+++++.... 
T Consensus       103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            33334 568888887775431    00  12334 67777777776 222     111   123456666665554110 


Q ss_pred             ----eeeeccccccCceeEeeccCCchHH---HHhhhccCCCCcEEecccc
Q 015001          244 ----IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       244 ----~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c  287 (414)
                          +...+..+++|++|+++++.+.+..   +...+..+++|+.|++++|
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence                1111233346666666655554332   2233444556666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.01  E-value=3.2e-10  Score=107.99  Aligned_cols=120  Identities=15%  Similarity=0.093  Sum_probs=50.1

Q ss_pred             ccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc--cccccc-ccccccceE
Q 015001          228 TSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH--KLTSVR-ISSPCLKTL  303 (414)
Q Consensus       228 ~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~~~~l~-~~~~~L~~L  303 (414)
                      +|+|+.|++..+...-+ ...|.++++|+.|.+..+++..-. .+.+-.+.++++|+|....  .+..=+ ..+..|++|
T Consensus       220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L  298 (873)
T KOG4194|consen  220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL  298 (873)
T ss_pred             cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhcccccccchhhhh
Confidence            45555555555441111 223455555555555544433200 0122334555555555421  111111 144555666


Q ss_pred             EeeccCCceEe----eccCCCeeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001          304 ILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (414)
Q Consensus       304 ~l~~c~~l~~~----~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~  349 (414)
                      +++.+..- .+    +--++.|+.|+++.+..     -.+.-+..|++|.++.|+
T Consensus       299 ~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  299 DLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             ccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            65554321 11    12224455555544433     223334555555555553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=3.2e-11  Score=105.81  Aligned_cols=173  Identities=18%  Similarity=0.209  Sum_probs=101.4

Q ss_pred             cceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEee-----eccceeeeE
Q 015001          163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNALA  235 (414)
Q Consensus       163 L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~  235 (414)
                      |+.|+|++..++...+..+++.|.+|+.|.|.+....+.+  .+..-.+|+.|+++.|+++.....     +|..|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5555555555555555555555555555555554433322  122224556666665554443332     455566666


Q ss_pred             eeeecc-cc-eeeec-cccccCceeEeeccC--CchHHHHhhhccCCCCcEEecccccccccc----cccccccceEEee
Q 015001          236 IHQTYL-FP-IEVNV-SSCGNLKCLKFDFLP--IEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTLILE  306 (414)
Q Consensus       236 l~~~~~-~~-~~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l----~~~~~~L~~L~l~  306 (414)
                      ++.|.. .+ +...+ .--++|+.|+++|+.  +....+..+...||+|.+|+|+.|..++.-    ...++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            655541 11 11111 123577777777654  333456777889999999999998666552    2378999999999


Q ss_pred             ccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEee-cc
Q 015001          307 CCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFS-SH  350 (414)
Q Consensus       307 ~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~-~~  350 (414)
                      -|..+..-               ....+...|+|..|++... ++
T Consensus       347 RCY~i~p~---------------~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  347 RCYDIIPE---------------TLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hhcCCChH---------------HeeeeccCcceEEEEeccccCc
Confidence            99776311               0035566777888888776 44

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.87  E-value=1.2e-09  Score=70.82  Aligned_cols=35  Identities=34%  Similarity=0.746  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHhccCChHHHHHhhhcccCchhhc
Q 015001           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW   46 (414)
Q Consensus        12 i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw   46 (414)
                      |+.||+||+.+||+||+.+|++++++|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.82  E-value=1.4e-09  Score=101.94  Aligned_cols=197  Identities=21%  Similarity=0.119  Sum_probs=114.9

Q ss_pred             CCCeEEEEEecCCc-----cccCCccccCCCcccEEEecCcccCCC--CccccC---cccceeEeeEEEcChHHHHH---
Q 015001          114 SEVKELVLVHWRSE-----RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKL---FSLRKLALREVCADDQAIAS---  180 (414)
Q Consensus       114 ~~l~~L~l~~~~~~-----~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l---~~L~~L~L~~~~~~~~~l~~---  180 (414)
                      ++++++++......     ...++..+..+++|++|++++|.+...  .....+   ++|+.|++++|.+++.....   
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            35777766552211     112233444567888888888766421  222222   44888888888775443332   


Q ss_pred             HHhCC-CcccEEEeeccCCcce----e--ecCCCCCCceEEEeecCCCc-----eEe---eeccceeeeEeeeecccc--
Q 015001          181 LISGC-PLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSDIK-----RVE---IKTSNVNALAIHQTYLFP--  243 (414)
Q Consensus       181 ll~~~-p~Le~L~l~~c~~~~~----l--~i~~l~~L~~L~l~~~~~l~-----~~~---~~~p~L~~L~l~~~~~~~--  243 (414)
                      .+..+ ++|++|++.+|.....    +  .+..+++|+.|++++| .+.     .+.   ...++|++|+++++...+  
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  209 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG  209 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence            34455 7888888888764411    1  2333567888888877 222     111   133578888888775211  


Q ss_pred             ---eeeeccccccCceeEeeccCCchHHHHhhhcc----CCCCcEEeccccccc----ccc---cccccccceEEeeccC
Q 015001          244 ---IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISK----LPLLEYLSMTKCHKL----TSV---RISSPCLKTLILECCD  309 (414)
Q Consensus       244 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~~----~~l---~~~~~~L~~L~l~~c~  309 (414)
                         +...+..+++|++|+++++.+.+..+..+...    .+.|+.|++++|...    ..+   ...+++|+.+++++|.
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence               12235567889999998888877555544443    368888888887432    111   1234677777777765


Q ss_pred             Cc
Q 015001          310 KL  311 (414)
Q Consensus       310 ~l  311 (414)
                      .-
T Consensus       290 l~  291 (319)
T cd00116         290 FG  291 (319)
T ss_pred             Cc
Confidence            43

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.81  E-value=2.1e-08  Score=102.53  Aligned_cols=218  Identities=16%  Similarity=0.067  Sum_probs=101.5

Q ss_pred             HhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          112 IESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       112 ~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      ...+-..|++...  ....+|..+.  .+|+.|.+++|.+...+  ...++|++|++++|.++.  +.   ...++|++|
T Consensus       199 l~~~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L  267 (788)
T PRK15387        199 LNNGNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LP---VLPPGLLEL  267 (788)
T ss_pred             hcCCCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--cc---Cccccccee
Confidence            3345556666553  2335666543  36777777776654322  124677777777766531  11   113455555


Q ss_pred             EeeccCCc-------------------ceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeecccc-
Q 015001          192 EIRSCEGL-------------------ESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSC-  251 (414)
Q Consensus       192 ~l~~c~~~-------------------~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~-  251 (414)
                      ++.+|...                   ..+.. ..++|+.|++++| .+..++...++|+.|.++++....    ++.+ 
T Consensus       268 ~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~----LP~lp  341 (788)
T PRK15387        268 SIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTS----LPTLP  341 (788)
T ss_pred             eccCCchhhhhhchhhcCEEECcCCccccccc-cccccceeECCCC-ccccCCCCcccccccccccCcccc----ccccc
Confidence            55554221                   11100 1245555555555 222222222234444444333111    1111 


Q ss_pred             ccCceeEeeccCCchHHHHh-----------------hhccCCCCcEEecccccccccccccccccceEEeeccCCceEe
Q 015001          252 GNLKCLKFDFLPIEDEWLCN-----------------GISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQV  314 (414)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~  314 (414)
                      ++|+.|++++|.+..  ++.                 +....++|+.|+++++ .+..++...++|+.|++++|. +..+
T Consensus       342 ~~Lq~LdLS~N~Ls~--LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~-LssI  417 (788)
T PRK15387        342 SGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSL  417 (788)
T ss_pred             cccceEecCCCccCC--CCCCCcccceehhhccccccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCc-CCCC
Confidence            256666666655442  111                 0111124555555553 223333334556666666653 2233


Q ss_pred             eccCCCeeeEEEeCcee----EEeccCCccceEEEEeecc
Q 015001          315 EIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       315 ~~~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~~~~  350 (414)
                      +....+|+.|.+.++..    ..+.++++|+.|+++.|+-
T Consensus       418 P~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        418 PMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             CcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence            32223455555555444    2345677888888887743

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.69  E-value=1.7e-10  Score=110.64  Aligned_cols=192  Identities=21%  Similarity=0.246  Sum_probs=103.0

Q ss_pred             CCCeEEEEEecCCccccCCcccc-CCCcccEEEecCcccCC-CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      +|.-.|+|++  .....+|..++ +...|-.|+|+.+++.. |+....+..|++|.|+++......+.. +.++.+|+.|
T Consensus       126 Kn~iVLNLS~--N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vL  202 (1255)
T KOG0444|consen  126 KNSIVLNLSY--NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVL  202 (1255)
T ss_pred             cCcEEEEccc--CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhh
Confidence            4666666655  33445666544 35667777777777643 355666677777777777664444433 3344455555


Q ss_pred             EeeccCCc-cee--ecCC-----------------------CCCCceEEEeecCCCceEee---eccceeeeEeeeeccc
Q 015001          192 EIRSCEGL-ESL--DLVN-----------------------LSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLF  242 (414)
Q Consensus       192 ~l~~c~~~-~~l--~i~~-----------------------l~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~  242 (414)
                      ++++.... ..+  ++..                       +++|+.|+++++ .+..+..   .-.+||+|+++.+...
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQLt  281 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQLT  281 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccchhc
Confidence            55443211 000  1222                       456666666665 3443332   2346666666666644


Q ss_pred             ceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccccc---cccccceEEeeccCC
Q 015001          243 PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK  310 (414)
Q Consensus       243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~~  310 (414)
                      .++..+..+++|+.|.+.++.+.-+.++..++.+.+|+.+...+. .++-++.   .|++|+.|.++.+..
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce
Confidence            445556666777777776666555555555555555555544441 2222222   456666666655443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.65  E-value=6.8e-10  Score=106.64  Aligned_cols=230  Identities=17%  Similarity=0.169  Sum_probs=126.0

Q ss_pred             CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      .++-|.|+.  .....+|..+..+.+|++|+++.+.+... .....+|.|+.+.++.+......+..-+-.+.-|..|+|
T Consensus        33 ~~~WLkLnr--t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL  110 (1255)
T KOG0444|consen   33 QMTWLKLNR--TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL  110 (1255)
T ss_pred             heeEEEech--hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence            455555543  23446677777777777777777665433 445566777777777766633333322345556666666


Q ss_pred             eccCCcce-eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHH
Q 015001          194 RSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW  268 (414)
Q Consensus       194 ~~c~~~~~-l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  268 (414)
                      +.+..-+. -.+....++-.|+++.+ .+..|+    +++..|-.|+++.+....++.....+.+|++|+++++.+....
T Consensus       111 ShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ  189 (1255)
T KOG0444|consen  111 SHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ  189 (1255)
T ss_pred             chhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence            66533210 11222355666666666 333333    3556666777777665555556666777777777777766555


Q ss_pred             HHhhhccCCCCcEEecccc-ccccccc---ccccccceEEeeccCC--ceEeeccCCCeeeEEEeCceeEE----eccCC
Q 015001          269 LCNGISKLPLLEYLSMTKC-HKLTSVR---ISSPCLKTLILECCDK--LIQVEIETPNLSIFKYHGDLISF----SSNAL  338 (414)
Q Consensus       269 ~~~~~~~~~~L~~L~l~~c-~~~~~l~---~~~~~L~~L~l~~c~~--l~~~~~~~p~L~~l~~~~~~~~~----~~~~~  338 (414)
                      +.+ +....+|+.|++++. ..+.+++   ..+.+|..++++.+..  +.+.....++|+.|.++|+.+..    ...-.
T Consensus       190 LrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~  268 (1255)
T KOG0444|consen  190 LRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWE  268 (1255)
T ss_pred             Hhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHh
Confidence            554 344555666666662 1222232   2445566666655432  12223444566666666665511    11124


Q ss_pred             ccceEEEEee
Q 015001          339 SLSETSLCFS  348 (414)
Q Consensus       339 ~L~~L~l~~~  348 (414)
                      .|+.|+++.|
T Consensus       269 ~lEtLNlSrN  278 (1255)
T KOG0444|consen  269 NLETLNLSRN  278 (1255)
T ss_pred             hhhhhccccc
Confidence            5666666655

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.60  E-value=5.9e-08  Score=99.59  Aligned_cols=220  Identities=16%  Similarity=0.154  Sum_probs=102.5

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      .+..+|++...  ....+|..+.  ++|+.|++++|.+...+. ..+++|++|++++|.++.  +...+  .++|+.|++
T Consensus       178 ~~~~~L~L~~~--~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKIL--GLTTIPACIP--EQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPATL--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCC--CcCcCCcccc--cCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChhh--hccccEEEC
Confidence            46667776552  2334554332  467777777776643221 123567777777766531  11101  235666666


Q ss_pred             eccCCcceeecCCCCCCceEEEeecCCCceEeee-ccceeeeEeeeecccceeeec-------------------ccccc
Q 015001          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIK-TSNVNALAIHQTYLFPIEVNV-------------------SSCGN  253 (414)
Q Consensus       194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~-~p~L~~L~l~~~~~~~~~~~~-------------------~~~~~  253 (414)
                      ++|... .+...-.++|+.|+++++ .+..++.. .++|+.|+++++....++..+                   ...++
T Consensus       249 s~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~s  326 (754)
T PRK15370        249 SINRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPG  326 (754)
T ss_pred             cCCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcccccc
Confidence            655322 111111134555555544 33322221 124555555444311111100                   11245


Q ss_pred             CceeEeeccCCchHHHHhhhccCCCCcEEecccccccccccc-cccccceEEeeccCCceEeeccCC-CeeeEEEeCcee
Q 015001          254 LKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIETP-NLSIFKYHGDLI  331 (414)
Q Consensus       254 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~-~~~~L~~L~l~~c~~l~~~~~~~p-~L~~l~~~~~~~  331 (414)
                      |+.|++.+|.+..  ++..+  .++|+.|+++++. +..++. -.++|+.|++++|.. ..++...+ +|+.+.+.++..
T Consensus       327 L~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~L-t~LP~~l~~sL~~LdLs~N~L  400 (754)
T PRK15370        327 LKTLEAGENALTS--LPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNAL-TNLPENLPAALQIMQASRNNL  400 (754)
T ss_pred             ceeccccCCcccc--CChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcC-CCCCHhHHHHHHHHhhccCCc
Confidence            6666666555432  11111  2567777777652 233332 235677777776642 23322221 345555554443


Q ss_pred             --------EEeccCCccceEEEEeecc
Q 015001          332 --------SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       332 --------~~~~~~~~L~~L~l~~~~~  350 (414)
                              ......+.+..+.+..|+.
T Consensus       401 ~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        401 VRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             ccCchhHHHHhhcCCCccEEEeeCCCc
Confidence                    1223346777888877754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=8.7e-09  Score=95.18  Aligned_cols=147  Identities=22%  Similarity=0.174  Sum_probs=81.6

Q ss_pred             CCCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcc--eeecCCCCCCc
Q 015001          137 YVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLK  211 (414)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~--~l~i~~l~~L~  211 (414)
                      .+++|+.|+++.+.+..+   ..-..++.||+|.|+.|.++..++.+++..||+|+.|.+..|....  ..+...+..|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            457777777777766544   2234577888888888888878888888888888888888775321  11122246777


Q ss_pred             eEEEeecCCCc----eEeeeccceeeeEeeeeccccee-------eeccccccCceeEeeccCCchHHHHhhhccCCCCc
Q 015001          212 EIILVNTSDIK----RVEIKTSNVNALAIHQTYLFPIE-------VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE  280 (414)
Q Consensus       212 ~L~l~~~~~l~----~~~~~~p~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  280 (414)
                      .|+++++..+.    .....+|.|+-|.++.+....+.       .....+|+|+.|++..+.+.+.....-+...++|+
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk  329 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK  329 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence            77777762111    11224556665555544411110       01233556666666555554322222233344444


Q ss_pred             EEe
Q 015001          281 YLS  283 (414)
Q Consensus       281 ~L~  283 (414)
                      .|.
T Consensus       330 ~l~  332 (505)
T KOG3207|consen  330 HLR  332 (505)
T ss_pred             hhh
Confidence            444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.57  E-value=1.5e-09  Score=99.60  Aligned_cols=249  Identities=18%  Similarity=0.220  Sum_probs=160.3

Q ss_pred             hhhHHHHHHHHHhCCCeEEEEEecCCcc-ccCCccccCCCcccEEEecCcccCCC----CccccCcccceeEeeEEEc-C
Q 015001          101 ASLAGRCLGLAIESEVKELVLVHWRSER-RNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-D  174 (414)
Q Consensus       101 ~~~i~~~l~~~~~~~l~~L~l~~~~~~~-~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~  174 (414)
                      ...+...+..+- ..++++.+..+.... ..+-....+|+++++|.+.+|...+.    .....|++|+.|+|..|.. +
T Consensus       126 g~VV~~~~~Rcg-g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT  204 (483)
T KOG4341|consen  126 GGVVENMISRCG-GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT  204 (483)
T ss_pred             CcceehHhhhhc-cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence            334444444333 578888888754333 33444456789999998888864333    3456688899999988665 8


Q ss_pred             hHHHHHHHhCCCcccEEEeeccCCccee----ecCCCCCCceEEEeecCCCc-----eEeeeccceeeeEeeeec---cc
Q 015001          175 DQAIASLISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIK-----RVEIKTSNVNALAIHQTY---LF  242 (414)
Q Consensus       175 ~~~l~~ll~~~p~Le~L~l~~c~~~~~l----~i~~l~~L~~L~l~~~~~l~-----~~~~~~p~L~~L~l~~~~---~~  242 (414)
                      +..++.+...||+|++|.++.|+.+..-    ...++..++.+...+|..+.     .....++-+..+++..|.   +.
T Consensus       205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~  284 (483)
T KOG4341|consen  205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE  284 (483)
T ss_pred             HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence            8888888889999999999988776431    23345667777777783221     122234445555544443   11


Q ss_pred             ceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEeccccccccc-----ccccccccceEEeeccCCce----
Q 015001          243 PIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTS-----VRISSPCLKTLILECCDKLI----  312 (414)
Q Consensus       243 ~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~-----l~~~~~~L~~L~l~~c~~l~----  312 (414)
                      .++..-..+..|+.|+.+++. +.+..+..+..++++|+.|.+..|..+.+     +..+++.|+.+++..|....    
T Consensus       285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL  364 (483)
T KOG4341|consen  285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL  364 (483)
T ss_pred             HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence            122223356788888887654 55666777778899999999999866544     34488999999998887643    


Q ss_pred             -EeeccCCCeeeEEEeCcee------E----EeccCCccceEEEEeecc
Q 015001          313 -QVEIETPNLSIFKYHGDLI------S----FSSNALSLSETSLCFSSH  350 (414)
Q Consensus       313 -~~~~~~p~L~~l~~~~~~~------~----~~~~~~~L~~L~l~~~~~  350 (414)
                       ++...+|.|+.+.++.+..      .    .-..+..|+.+.+...+.
T Consensus       365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~  413 (483)
T KOG4341|consen  365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL  413 (483)
T ss_pred             hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence             3456667788887775543      1    112245566666655543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.49  E-value=2.3e-07  Score=95.36  Aligned_cols=119  Identities=15%  Similarity=0.057  Sum_probs=78.9

Q ss_pred             CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~  218 (414)
                      .+...|++++..+...+.. -.++|+.|+|++|.++.  +...  .+++|+.|++++|.. ..+.....++|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~L-tsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQL-TSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCcc-ccCChhhhccccEEECcCC
Confidence            4678899988766532211 12579999999998742  2211  236899999998854 3332222368999999998


Q ss_pred             CCCceEeee-ccceeeeEeeeecccceeeeccccccCceeEeeccCCch
Q 015001          219 SDIKRVEIK-TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED  266 (414)
Q Consensus       219 ~~l~~~~~~-~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (414)
                       .+..++.. ..+|+.|+++++....++..+  .++|+.|++++|.+..
T Consensus       252 -~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        252 -RITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT  297 (754)
T ss_pred             -ccCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc
Confidence             45555432 347999999987743333323  3589999999887653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.42  E-value=2.8e-08  Score=89.48  Aligned_cols=239  Identities=18%  Similarity=0.159  Sum_probs=120.8

Q ss_pred             hhHHHHHHHH-HhCCCeEEEEEecCCcc---ccCCccccCCCcccEEEecCcccCCC------------CccccCcccce
Q 015001          102 SLAGRCLGLA-IESEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP------------SENVKLFSLRK  165 (414)
Q Consensus       102 ~~i~~~l~~~-~~~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------------~~~~~l~~L~~  165 (414)
                      +..+...... ....+++++++..+...   ..+-..+.+-++|+..+++.-...-+            .....+|.|++
T Consensus        17 ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~   96 (382)
T KOG1909|consen   17 EDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK   96 (382)
T ss_pred             hhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence            3444444433 23588888888743211   12333445557888888877432111            23456789999


Q ss_pred             eEeeEEEcC---hHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeec
Q 015001          166 LALREVCAD---DQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY  240 (414)
Q Consensus       166 L~L~~~~~~---~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~  240 (414)
                      |+|+.|.++   ...+..++++|..|++|.+.+|.-...-  .++  ..|..|.      ......+.|.|+.+....+.
T Consensus        97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~------~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA------VNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH------HHhccCCCcceEEEEeeccc
Confidence            999999883   4467778889999999999988533100  000  0111110      00011123445555544443


Q ss_pred             cc--c---eeeeccccccCceeEeeccCCchH---HHHhhhccCCCCcEEecccccc-------cccccccccccceEEe
Q 015001          241 LF--P---IEVNVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKCHK-------LTSVRISSPCLKTLIL  305 (414)
Q Consensus       241 ~~--~---~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~-------~~~l~~~~~~L~~L~l  305 (414)
                      ..  +   +...+...+.|+.+.+..+.|...   .+...+..||+|+.|+|+....       +......+++|+.|++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            10  0   011233445555555555544332   2233345556666666555211       1111123445555555


Q ss_pred             eccCCce--------EeeccCCCeeeEEEeCcee---------EEeccCCccceEEEEee
Q 015001          306 ECCDKLI--------QVEIETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFS  348 (414)
Q Consensus       306 ~~c~~l~--------~~~~~~p~L~~l~~~~~~~---------~~~~~~~~L~~L~l~~~  348 (414)
                      ++|.--.        .+.-..|+|+.+.+.++.+         ..+...|.|++|+++.|
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            5553211        1122345555555555543         33444678888888777

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.42  E-value=4.1e-08  Score=63.92  Aligned_cols=39  Identities=38%  Similarity=0.677  Sum_probs=32.1

Q ss_pred             cCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhcccc
Q 015001           11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTF   49 (414)
Q Consensus        11 ~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~~   49 (414)
                      .+++||+|++.+||++|+.+|+++++.|||+|+++....
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            356899999999999999999999999999999976553

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.33  E-value=7.6e-08  Score=86.71  Aligned_cols=225  Identities=18%  Similarity=0.167  Sum_probs=134.7

Q ss_pred             CCCCeeeEEEEEecCCCCCChhhHHHHHHHHHh--CCCeEEEEEe--cCCccccCCcc-------ccCCCcccEEEecCc
Q 015001           81 KMISIKKFSLELDLINSPENASLAGRCLGLAIE--SEVKELVLVH--WRSERRNLPEI-------IFYVESLHVLELSYC  149 (414)
Q Consensus        81 ~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~--~~l~~L~l~~--~~~~~~~lp~~-------~~~~~~L~~L~L~~~  149 (414)
                      +...+.+++++-.     ..+.-..+|+....+  +.+++.+++.  .+....++|..       +..|+.|++|+||.|
T Consensus        28 ~~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   28 PMDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             ccCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            3456777666543     456677888877655  4777777765  33334455553       345789999999999


Q ss_pred             ccCCC------CccccCcccceeEeeEEEcChHH------------HHHHHhCCCcccEEEeeccCCcce----e--ecC
Q 015001          150 KLQQP------SENVKLFSLRKLALREVCADDQA------------IASLISGCPLIEYLEIRSCEGLES----L--DLV  205 (414)
Q Consensus       150 ~~~~~------~~~~~l~~L~~L~L~~~~~~~~~------------l~~ll~~~p~Le~L~l~~c~~~~~----l--~i~  205 (414)
                      -+.+.      ....++.+|+.|.|.+|..+...            ....+..-|.|+.+...+|.....    +  .+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            87654      23456899999999999884332            122344567888888877754421    1  233


Q ss_pred             CCCCCceEEEeecC-CCceEe------eeccceeeeEeeeeccc-----ceeeeccccccCceeEeeccCCchHHH----
Q 015001          206 NLSNLKEIILVNTS-DIKRVE------IKTSNVNALAIHQTYLF-----PIEVNVSSCGNLKCLKFDFLPIEDEWL----  269 (414)
Q Consensus       206 ~l~~L~~L~l~~~~-~l~~~~------~~~p~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~----  269 (414)
                      .+++|+.+.+..+. ....+.      ..+|+|+.|++.++..+     .+...++.+++|+.|++++|.+.+...    
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            45788888877761 111111      15677777777766511     112235566777777777766554322    


Q ss_pred             HhhhccCCCCcEEeccccccccc----cc---ccccccceEEeeccCC
Q 015001          270 CNGISKLPLLEYLSMTKCHKLTS----VR---ISSPCLKTLILECCDK  310 (414)
Q Consensus       270 ~~~~~~~~~L~~L~l~~c~~~~~----l~---~~~~~L~~L~l~~c~~  310 (414)
                      ..+-...|+|+.|.+.++.....    +.   ..-|.|+.|++++|..
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            22223467777777777522211    11   1356677777766644

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.31  E-value=3.4e-07  Score=57.26  Aligned_cols=34  Identities=38%  Similarity=0.692  Sum_probs=31.5

Q ss_pred             CCHHHHHHHhccCChHHHHHhhhcccCchhhccc
Q 015001           15 LPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT   48 (414)
Q Consensus        15 LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~   48 (414)
                      ||+|++.+||++++.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999986544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.31  E-value=3.6e-07  Score=76.71  Aligned_cols=59  Identities=22%  Similarity=0.169  Sum_probs=23.7

Q ss_pred             ccceeeeEeeeecccc--eeeeccccccCceeEeeccCCchHH--HHhhhccCCCCcEEeccc
Q 015001          228 TSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       228 ~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~  286 (414)
                      +|+|++|.++++....  ....+..+|+|+.|++.+|++....  -..++..+|+|+.|+-..
T Consensus        87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            4555555555544111  1123456677777777766655421  223456677777776544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.28  E-value=1.8e-06  Score=88.51  Aligned_cols=194  Identities=16%  Similarity=0.100  Sum_probs=106.4

Q ss_pred             CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~  218 (414)
                      ..-..|+++.+.+...+. .-.++|+.|.+.+|.++.  +.   ...|+|++|++++|... .+.. ..++|+.|++..|
T Consensus       201 ~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N~Lt-sLP~-lp~sL~~L~Ls~N  272 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQLT-SLPV-LPPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCC--CC---CCCCCCcEEEecCCccC-cccC-cccccceeeccCC
Confidence            456778999987764322 112589999999988742  22   24689999999998432 2221 1367777777776


Q ss_pred             CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhh----------------hccC-CCCcE
Q 015001          219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG----------------ISKL-PLLEY  281 (414)
Q Consensus       219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~~~-~~L~~  281 (414)
                       .+..++...++|+.|+++++....++.   ..++|+.|++++|.+..  ++.+                +..+ ++|+.
T Consensus       273 -~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~--Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~  346 (788)
T PRK15387        273 -PLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPTLPSGLQE  346 (788)
T ss_pred             -chhhhhhchhhcCEEECcCCccccccc---cccccceeECCCCcccc--CCCCcccccccccccCccccccccccccce
Confidence             344333333456666666555222221   23456666665555432  1110                0011 25666


Q ss_pred             EecccccccccccccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEe-ccCCccceEEEEee
Q 015001          282 LSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFS-SNALSLSETSLCFS  348 (414)
Q Consensus       282 L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~-~~~~~L~~L~l~~~  348 (414)
                      |+++++ .+..++...++|+.|.+++|. +..++...++|+.|.+.++....+ ...++|+.|+++.+
T Consensus       347 LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N  412 (788)
T PRK15387        347 LSVSDN-QLASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN  412 (788)
T ss_pred             EecCCC-ccCCCCCCCcccceehhhccc-cccCcccccccceEEecCCcccCCCCcccCCCEEEccCC
Confidence            666663 233344444566666665543 223333334677777776654111 12357888888776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.28  E-value=9.6e-08  Score=96.03  Aligned_cols=200  Identities=24%  Similarity=0.238  Sum_probs=115.6

Q ss_pred             hhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcC---hHH
Q 015001          102 SLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCAD---DQA  177 (414)
Q Consensus       102 ~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~---~~~  177 (414)
                      ..+.+|+..+.  +|+.+.....  ....+|..++...+|++|....|.+.-. +....+.+|++|+|..+.+.   +..
T Consensus       254 ~~lp~wi~~~~--nle~l~~n~N--~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~  329 (1081)
T KOG0618|consen  254 SNLPEWIGACA--NLEALNANHN--RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF  329 (1081)
T ss_pred             hcchHHHHhcc--cceEecccch--hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH
Confidence            34556766543  6666666542  2255666666666666666666655432 33445788888888877662   111


Q ss_pred             HH-------HHH--------------hCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEee----eccc
Q 015001          178 IA-------SLI--------------SGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI----KTSN  230 (414)
Q Consensus       178 l~-------~ll--------------~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~----~~p~  230 (414)
                      +.       .+-              ...+.|+.|.+.+|...+..  .+.+.++||.|+++++ .+..++.    ..+.
T Consensus       330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~  408 (1081)
T KOG0618|consen  330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEE  408 (1081)
T ss_pred             HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHH
Confidence            11       000              02345566666666544322  2334578888888877 3333332    4567


Q ss_pred             eeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc--c--cccccceEEee
Q 015001          231 VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--I--SSPCLKTLILE  306 (414)
Q Consensus       231 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~--~--~~~~L~~L~l~  306 (414)
                      ||.|.++|+....++..+..++.|++|...++.+..  +++ +..++.|+.++++.. .+..+.  .  ..|+|++|+++
T Consensus       409 LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~--fPe-~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlS  484 (1081)
T KOG0618|consen  409 LEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS--FPE-LAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLS  484 (1081)
T ss_pred             hHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--chh-hhhcCcceEEecccc-hhhhhhhhhhCCCcccceeecc
Confidence            777888887755556666777777777776666543  333 455677777777763 222221  1  22677777777


Q ss_pred             ccCC
Q 015001          307 CCDK  310 (414)
Q Consensus       307 ~c~~  310 (414)
                      ++..
T Consensus       485 GN~~  488 (1081)
T KOG0618|consen  485 GNTR  488 (1081)
T ss_pred             CCcc
Confidence            7664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.12  E-value=1.1e-06  Score=89.65  Aligned_cols=147  Identities=19%  Similarity=0.198  Sum_probs=101.8

Q ss_pred             CcccEEEecCcccCC---C-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001          139 ESLHVLELSYCKLQQ---P-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~---~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~  214 (414)
                      .+|++|+++|...-.   + ....-||+|++|.+.+..+...++..+..++|+|..|+++++....-..++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            678888887743211   1 345668999999999998866668888889999999999987544333466678888887


Q ss_pred             EeecCCCce-E---e-eeccceeeeEeeeeccccee-------eeccccccCceeEeeccCCchHHHHhhhccCCCCcEE
Q 015001          215 LVNTSDIKR-V---E-IKTSNVNALAIHQTYLFPIE-------VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL  282 (414)
Q Consensus       215 l~~~~~l~~-~---~-~~~p~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  282 (414)
                      +.+- .+.. -   . ..+.+|+.|+++........       ..-..+|+|+.||.++..+..+.+..++..-|+|+..
T Consensus       202 mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  202 MRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             ccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            7755 2221 1   1 25778888888876511111       1123488999999999998888888888878887776


Q ss_pred             eccc
Q 015001          283 SMTK  286 (414)
Q Consensus       283 ~l~~  286 (414)
                      ..-.
T Consensus       281 ~~~~  284 (699)
T KOG3665|consen  281 AALD  284 (699)
T ss_pred             hhhh
Confidence            5443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.06  E-value=2.1e-07  Score=93.62  Aligned_cols=198  Identities=14%  Similarity=0.148  Sum_probs=101.2

Q ss_pred             cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce-eecCCCCCCceEEEeec--CCCceEeeeccceeeeEee
Q 015001          161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIH  237 (414)
Q Consensus       161 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~-l~i~~l~~L~~L~l~~~--~~l~~~~~~~p~L~~L~l~  237 (414)
                      .+|.+++++.+.+.  .+...+..|++||.+.+..+....- ..+....+|+.|.+..|  +.+........+|++|++.
T Consensus       241 ~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecchhhhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence            46778888777763  2336678888888888877654311 12222344444444444  1122222223344444444


Q ss_pred             eecccceee------------------------ec--cccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccc
Q 015001          238 QTYLFPIEV------------------------NV--SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (414)
Q Consensus       238 ~~~~~~~~~------------------------~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  291 (414)
                      .+....++.                        .+  ...+.|+.|.+.++.+++..++. +.++++|+.|+|++. -+.
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyN-rL~  396 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYN-RLN  396 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeeccc-ccc
Confidence            333111000                        01  12356666666777766655543 667777777777773 122


Q ss_pred             ccc----ccccccceEEeeccCC----------------------ceEe--eccCCCeeeEEEeCcee---EEecc--CC
Q 015001          292 SVR----ISSPCLKTLILECCDK----------------------LIQV--EIETPNLSIFKYHGDLI---SFSSN--AL  338 (414)
Q Consensus       292 ~l~----~~~~~L~~L~l~~c~~----------------------l~~~--~~~~p~L~~l~~~~~~~---~~~~~--~~  338 (414)
                      .++    ..++.|++|.++++..                      +..+  ....|.|+.++++.+..   ..-.+  .+
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p  476 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSP  476 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence            222    2556666666666542                      1111  12334566666665544   11111  16


Q ss_pred             ccceEEEEeecchhhhHHHHHHHH
Q 015001          339 SLSETSLCFSSHLMVNIEWVVEYF  362 (414)
Q Consensus       339 ~L~~L~l~~~~~~~~~~~~~~~~~  362 (414)
                      .||.|+++.|...-.+.+.+..+.
T Consensus       477 ~LkyLdlSGN~~l~~d~~~l~~l~  500 (1081)
T KOG0618|consen  477 NLKYLDLSGNTRLVFDHKTLKVLK  500 (1081)
T ss_pred             ccceeeccCCcccccchhhhHHhh
Confidence            788888887754344445554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.04  E-value=1.2e-06  Score=73.67  Aligned_cols=77  Identities=23%  Similarity=0.199  Sum_probs=27.3

Q ss_pred             ccceeeeEeeeecccceeeec-cccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc------cccccccc
Q 015001          228 TSNVNALAIHQTYLFPIEVNV-SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS------VRISSPCL  300 (414)
Q Consensus       228 ~p~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~------l~~~~~~L  300 (414)
                      +++|+.|+++++....+...+ ..+|+|++|+++++.+.+-.-...+..+|+|+.|++.+.+....      +...+|+|
T Consensus        63 L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L  142 (175)
T PF14580_consen   63 LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL  142 (175)
T ss_dssp             -TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred             hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh
Confidence            455666666665532222122 34677777777777765422223355677777777776422211      11255666


Q ss_pred             ceEE
Q 015001          301 KTLI  304 (414)
Q Consensus       301 ~~L~  304 (414)
                      +.|+
T Consensus       143 k~LD  146 (175)
T PF14580_consen  143 KVLD  146 (175)
T ss_dssp             SEET
T ss_pred             heeC
Confidence            6665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.01  E-value=8.2e-07  Score=88.17  Aligned_cols=126  Identities=21%  Similarity=0.271  Sum_probs=82.3

Q ss_pred             hCCCeEEEEEecCC-ccccCCccccCCCcccEEEecCc-ccCCC------CccccCcccceeEeeEEE-cChHHHHHHHh
Q 015001          113 ESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVC-ADDQAIASLIS  183 (414)
Q Consensus       113 ~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~  183 (414)
                      .++++++.+..+.. ....+-.....++.|+.|++++| .....      .....+++|+.|++.++. +++..+..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            35777777766322 11123344566889999999873 21111      344566889999999888 58888888888


Q ss_pred             CCCcccEEEeeccCCccee---e-cCCCCCCceEEEeecCCC-----ceEeeeccceeeeEeee
Q 015001          184 GCPLIEYLEIRSCEGLESL---D-LVNLSNLKEIILVNTSDI-----KRVEIKTSNVNALAIHQ  238 (414)
Q Consensus       184 ~~p~Le~L~l~~c~~~~~l---~-i~~l~~L~~L~l~~~~~l-----~~~~~~~p~L~~L~l~~  238 (414)
                      .||+||+|.+.+|..+...   . ...+++|++|+++.|..+     ..+...+|+|+.|.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            8999999998888764322   1 223688999999988443     22223566666655443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.00  E-value=1.4e-07  Score=76.69  Aligned_cols=82  Identities=21%  Similarity=0.229  Sum_probs=45.9

Q ss_pred             ccCCCcccEEEecCcccCC-CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcc-eeecCCCCCCce
Q 015001          135 IFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE-SLDLVNLSNLKE  212 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~-~l~i~~l~~L~~  212 (414)
                      ++.+.+++.|.++.+.+.. ++..+.+.+|+.|+++++++.  .+..-++++|.|+.|.+.-+.... .-.++++|.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            4556667777777766543 355666777777777777652  233335666666666665442210 112344555555


Q ss_pred             EEEeec
Q 015001          213 IILVNT  218 (414)
Q Consensus       213 L~l~~~  218 (414)
                      |++.++
T Consensus       107 ldltyn  112 (264)
T KOG0617|consen  107 LDLTYN  112 (264)
T ss_pred             hhcccc
Confidence            555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=2.2e-06  Score=75.87  Aligned_cols=192  Identities=17%  Similarity=0.130  Sum_probs=132.1

Q ss_pred             CCCeEEEEEecC-CccccCCccccCCCcccEEEecCcccCCCC--ccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      ..++++++.... ..-.++.+.+.+++.|+.|+++.+.+..+.  ......+|++|.|.+...+.......+...|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            488999987522 222344555667899999999999887651  12466799999999988888888888999999999


Q ss_pred             EEeeccCCc------ceeecCCCCCCceEEEeec-----CCCceEeeeccceeeeEeeeecccc--eeeeccccccCcee
Q 015001          191 LEIRSCEGL------ESLDLVNLSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCL  257 (414)
Q Consensus       191 L~l~~c~~~------~~l~i~~l~~L~~L~l~~~-----~~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L  257 (414)
                      |+++.|..-      .+..- ..+.++.|....|     .....+....||+.++.+..++...  .......+|.+--|
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~-~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIED-WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhccchhhhhccccccccc-cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            999877321      11111 1367888888888     2233344467999998888776221  12234456777788


Q ss_pred             EeeccCCchHHHHhhhccCCCCcEEecccccccccc---------cccccccceEEee
Q 015001          258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---------RISSPCLKTLILE  306 (414)
Q Consensus       258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---------~~~~~~L~~L~l~  306 (414)
                      .++.+.+...+...-+..||.|..|.+...+....+         ...+++++.|+=+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            888888877666666899999999999884332222         1266777777644

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.92  E-value=8.9e-08  Score=77.83  Aligned_cols=66  Identities=23%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             ccCCccccCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeecc
Q 015001          129 RNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC  196 (414)
Q Consensus       129 ~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c  196 (414)
                      ..+|+.+....+|+.|++.++.+. .|.+..++|+|+.|++.-+...  .+..-+.++|.||.|++.++
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhcccc
Confidence            344555555555555555555442 2244455555555555544331  11222345555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.75  E-value=0.00015  Score=76.16  Aligned_cols=275  Identities=17%  Similarity=0.134  Sum_probs=146.4

Q ss_pred             hhhHHHHHHHHHhccccCCCCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccE
Q 015001           64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHV  143 (414)
Q Consensus        64 ~~~f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~  143 (414)
                      ..-+...|++.+...........++.++       .-...+.-|++......-+. .+-..+......|. ..+....+.
T Consensus       457 ~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~-~~~~~~~rr  527 (889)
T KOG4658|consen  457 YDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQ-VKSWNSVRR  527 (889)
T ss_pred             HHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccc-eEEECCcCcccccc-ccchhheeE
Confidence            3344566666663221111234444443       23445555665544333333 22222212223333 333466777


Q ss_pred             EEecCcccCCCCccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCC
Q 015001          144 LELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSD  220 (414)
Q Consensus       144 L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~  220 (414)
                      ..+-++.+........++.|++|-+.++.. -......++..+|.|..|++++|.....+  .|+.+-+||.|+++.+ .
T Consensus       528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~  606 (889)
T KOG4658|consen  528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-G  606 (889)
T ss_pred             EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-C
Confidence            777777665445566677888888888752 11222334567899999999988777655  4666788888888887 5


Q ss_pred             CceEeee---ccceeeeEeeeecc-cceeeeccccccCceeEeeccCCch-HHHHhhhccCCCCcEEecccccc------
Q 015001          221 IKRVEIK---TSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHK------  289 (414)
Q Consensus       221 l~~~~~~---~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~------  289 (414)
                      +..++..   ...|.+|++..... ...+-....+++|+.|.+....... .....-+..+.+|+.+....+..      
T Consensus       607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l  686 (889)
T KOG4658|consen  607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL  686 (889)
T ss_pred             ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhh
Confidence            6666553   34455666655441 1112233447788888876554221 11112234444455444433211      


Q ss_pred             -------------------ccc---ccccccccceEEeeccCCceEee--------cc-CCCeeeEEEeCcee----EEe
Q 015001          290 -------------------LTS---VRISSPCLKTLILECCDKLIQVE--------IE-TPNLSIFKYHGDLI----SFS  334 (414)
Q Consensus       290 -------------------~~~---l~~~~~~L~~L~l~~c~~l~~~~--------~~-~p~L~~l~~~~~~~----~~~  334 (414)
                                         ...   ....+.+|+.|.|.+|...+...        .. +|++.++....+..    ...
T Consensus       687 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~  766 (889)
T KOG4658|consen  687 LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL  766 (889)
T ss_pred             hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence                               000   11245678888888887653211        11 34444444444433    444


Q ss_pred             ccCCccceEEEEee
Q 015001          335 SNALSLSETSLCFS  348 (414)
Q Consensus       335 ~~~~~L~~L~l~~~  348 (414)
                      ..+|+|+.|.+...
T Consensus       767 ~f~~~L~~l~l~~~  780 (889)
T KOG4658|consen  767 LFAPHLTSLSLVSC  780 (889)
T ss_pred             hccCcccEEEEecc
Confidence            56788888888766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.69  E-value=1e-05  Score=82.66  Aligned_cols=34  Identities=38%  Similarity=0.443  Sum_probs=14.2

Q ss_pred             ccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001          250 SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (414)
                      ++|||..||+++.++.+-   ..++.+.+|+.|.+.+
T Consensus       171 sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRN  204 (699)
T ss_pred             ccCccceeecCCCCccCc---HHHhccccHHHHhccC
Confidence            444444444444444331   1233444444444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.62  E-value=8.8e-08  Score=87.81  Aligned_cols=196  Identities=18%  Similarity=0.164  Sum_probs=101.8

Q ss_pred             ccCCccccCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee-ecCC
Q 015001          129 RNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVN  206 (414)
Q Consensus       129 ~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l-~i~~  206 (414)
                      .++|..+.+..+|+.|+.+.+.+. .++..+.+-.|..|+..++++.  .+..-+.+|..|..|.+.++...... ...+
T Consensus       104 s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~  181 (565)
T KOG0472|consen  104 SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENHIA  181 (565)
T ss_pred             hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHHHH
Confidence            344444444455555555444332 2233444444444444444431  11111233444555555554332110 0111


Q ss_pred             CCCCceEEEeecCCCceEee---eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001          207 LSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (414)
Q Consensus       207 l~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  283 (414)
                      ...|++|+...+ .+..++-   .+.+|+-|++..+....++ .|++|+.|++|+++.+.+.. .-.+....++++..|+
T Consensus       182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeee
Confidence            355666655544 3333433   2345555566665533333 78888888888888777643 2334566889999999


Q ss_pred             cccccccccccc---cccccceEEeeccCCceEeeccCC--CeeeEEEeCcee
Q 015001          284 MTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETP--NLSIFKYHGDLI  331 (414)
Q Consensus       284 l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~~~~~p--~L~~l~~~~~~~  331 (414)
                      ++.. .++.++.   ...+|+.|+++++.. ..++....  .|+.+.+.|++.
T Consensus       259 LRdN-klke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnlhL~~L~leGNPl  309 (565)
T KOG0472|consen  259 LRDN-KLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNLHLKFLALEGNPL  309 (565)
T ss_pred             cccc-ccccCchHHHHhhhhhhhcccCCcc-ccCCcccccceeeehhhcCCch
Confidence            9883 4455554   455688888887643 22332222  356666667765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.56  E-value=1.1e-05  Score=71.63  Aligned_cols=124  Identities=21%  Similarity=0.180  Sum_probs=79.3

Q ss_pred             CcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec--CCCceEeeeccceeeeEee
Q 015001          160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIH  237 (414)
Q Consensus       160 l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~--~~l~~~~~~~p~L~~L~l~  237 (414)
                      +..|+.++|++|.++  .++.-+.-.|.++.|.++.|.....=++..+++|+.|+++++  ..+..+....-|.++|.+.
T Consensus       283 Wq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            567888888888762  233334457888888888875432223556788888888887  3333444456778888887


Q ss_pred             eecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001          238 QTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       238 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (414)
                      ++.... ...++.+-+|..|+++++.|..-.-...++++|-|++|.+.+
T Consensus       361 ~N~iE~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~  408 (490)
T KOG1259|consen  361 QNKIET-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG  408 (490)
T ss_pred             hhhHhh-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence            776221 123445567777888877776544344466666666666665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.47  E-value=3e-05  Score=81.30  Aligned_cols=199  Identities=22%  Similarity=0.254  Sum_probs=121.7

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      .+.++.|+++. .....++|..+..+-+|++|++++..+. .|.+...+..|.+|++..+..-.. +..+...+++|+.|
T Consensus       570 m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L  647 (889)
T KOG4658|consen  570 LPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES-IPGILLELQSLRVL  647 (889)
T ss_pred             CcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc-ccchhhhcccccEE
Confidence            45777777765 3456788988888889999999988764 446778888888888887654211 13445568899999


Q ss_pred             EeeccC-Cccee---ecCCCCCCceEEEeecCC--CceEeeeccceee----eEeeeecccceeeeccccccCceeEeec
Q 015001          192 EIRSCE-GLESL---DLVNLSNLKEIILVNTSD--IKRVEIKTSNVNA----LAIHQTYLFPIEVNVSSCGNLKCLKFDF  261 (414)
Q Consensus       192 ~l~~c~-~~~~l---~i~~l~~L~~L~l~~~~~--l~~~~~~~p~L~~----L~l~~~~~~~~~~~~~~~~~L~~L~l~~  261 (414)
                      .+.... .....   .+..+.+|+.+++..++.  +..+ ...++|.+    +.+.++........+..+.+|+.|.+.+
T Consensus       648 ~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~  726 (889)
T KOG4658|consen  648 RLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD  726 (889)
T ss_pred             EeeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence            887653 11111   233456666666655422  0111 12334432    2222222223345677888999999988


Q ss_pred             cCCchHHHH---h-hhc-cCCCCcEEeccccccccccc--ccccccceEEeeccCCceEe
Q 015001          262 LPIEDEWLC---N-GIS-KLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQV  314 (414)
Q Consensus       262 ~~~~~~~~~---~-~~~-~~~~L~~L~l~~c~~~~~l~--~~~~~L~~L~l~~c~~l~~~  314 (414)
                      +.+.+....   . ... .|+++..+.+..|.....+.  .-.|+|+.|.+.+|...++.
T Consensus       727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~  786 (889)
T KOG4658|consen  727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI  786 (889)
T ss_pred             CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence            877542110   0 011 25566666666776666554  36688888888888765443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.45  E-value=0.00021  Score=63.66  Aligned_cols=30  Identities=17%  Similarity=0.087  Sum_probs=21.2

Q ss_pred             eeeEEEeCcee------EEeccCCccceEEEEeecc
Q 015001          321 LSIFKYHGDLI------SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       321 L~~l~~~~~~~------~~~~~~~~L~~L~l~~~~~  350 (414)
                      |..|+..++.+      ..++++|.|+.+.+..|+-
T Consensus       376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             heeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            44445555554      6788899999999988843

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.39  E-value=2.4e-05  Score=77.30  Aligned_cols=201  Identities=15%  Similarity=0.134  Sum_probs=111.2

Q ss_pred             ccCCCCeeeEEEEEecCCCCCChhhHHHHHHHH-HhCCCeEEEEEec-CCccccCCccccCCCcccEEEecCcccCCCCc
Q 015001           79 QRKMISIKKFSLELDLINSPENASLAGRCLGLA-IESEVKELVLVHW-RSERRNLPEIIFYVESLHVLELSYCKLQQPSE  156 (414)
Q Consensus        79 ~~~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~-~~~~l~~L~l~~~-~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~  156 (414)
                      ...+.+++.|+......   .+...+...-... +....+.+.+... ...+.+ |-.++.+.+|++|.+.+|.+....+
T Consensus        51 g~~g~~~~~f~a~~s~~---ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G  126 (1096)
T KOG1859|consen   51 GLSGAPVDYFRAYVSDN---ADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKG  126 (1096)
T ss_pred             ccCCCCCceeEEecCCc---ccchHHHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhh
Confidence            34567888887655432   2233333322211 1235555665543 233333 7788999999999999997654311


Q ss_pred             ccc---------------------------------CcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceee
Q 015001          157 NVK---------------------------------LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD  203 (414)
Q Consensus       157 ~~~---------------------------------l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~  203 (414)
                      ...                                 +-.|.+.+.++|..  ..++.-+.-.|.||.|+|+.|.....-.
T Consensus       127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~  204 (1096)
T KOG1859|consen  127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDN  204 (1096)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHH
Confidence            111                                 12333444444433  1122223345777777777775543224


Q ss_pred             cCCCCCCceEEEeec--CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcE
Q 015001          204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (414)
Q Consensus       204 i~~l~~L~~L~l~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  281 (414)
                      +.-+++|++|+|+++  ..++.+....-+|..|.+.++.... ...+.++.+|+.||+++|-+.+..-...+..+..|+.
T Consensus       205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~  283 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV  283 (1096)
T ss_pred             HHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence            445678888888776  3333333333447777777776222 2345667777778887776665443334455556666


Q ss_pred             Eeccc
Q 015001          282 LSMTK  286 (414)
Q Consensus       282 L~l~~  286 (414)
                      |.|.+
T Consensus       284 L~LeG  288 (1096)
T KOG1859|consen  284 LWLEG  288 (1096)
T ss_pred             HhhcC
Confidence            66666

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.00015  Score=64.51  Aligned_cols=149  Identities=13%  Similarity=0.092  Sum_probs=88.9

Q ss_pred             CcccEEEecCcccCCC----CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcceee-c-CCCCCCc
Q 015001          139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD-L-VNLSNLK  211 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~-i-~~l~~L~  211 (414)
                      .-++-|.+.+|.++..    .....+..++.|+|.+|.+ ....+..++.++|.|+.|+|+.|.....+. . ....+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            3455677778877655    2234567899999999999 556788889999999999999876554331 1 1246888


Q ss_pred             eEEEeec----CCCceEeeeccceeeeEeeeecccceee---ecc-ccccCceeEeeccCCc-hHHHHhhhccCCCCcEE
Q 015001          212 EIILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEV---NVS-SCGNLKCLKFDFLPIE-DEWLCNGISKLPLLEYL  282 (414)
Q Consensus       212 ~L~l~~~----~~l~~~~~~~p~L~~L~l~~~~~~~~~~---~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L  282 (414)
                      .|.+.+.    .......-+.|.++.|+++.+....+..   ... --+.+++|++..|... +.....+...||++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            8888876    1122222356777777666553110000   011 1134555555444432 12233444557777766


Q ss_pred             ecccc
Q 015001          283 SMTKC  287 (414)
Q Consensus       283 ~l~~c  287 (414)
                      .+..|
T Consensus       205 ~v~e~  209 (418)
T KOG2982|consen  205 FVCEG  209 (418)
T ss_pred             eeecC
Confidence            66654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.32  E-value=2.5e-05  Score=77.58  Aligned_cols=148  Identities=20%  Similarity=0.233  Sum_probs=91.4

Q ss_pred             CcccEEEecCcccCCC-----CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeecc-CCcce------eecC
Q 015001          139 ESLHVLELSYCKLQQP-----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSC-EGLES------LDLV  205 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~-----~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c-~~~~~------l~i~  205 (414)
                      ..+..+++..+.....     .....+++|+.|.+.++.. ++..+..+...||+|++|++++| .....      ....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  240 (482)
T KOG1947|consen  161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS  240 (482)
T ss_pred             HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence            4455555555432211     2233478888888888865 65567777888899999988873 22211      1122


Q ss_pred             CCCCCceEEEeecCCCceEee-----eccceeeeEeeeecc---cceeeeccccccCceeEeeccCC-chHHHHhhhccC
Q 015001          206 NLSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYL---FPIEVNVSSCGNLKCLKFDFLPI-EDEWLCNGISKL  276 (414)
Q Consensus       206 ~l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~  276 (414)
                      .+++|+.|+++.|..+....+     .+|+|++|.+.++..   ..+......+++|++|+++++.. .+..+......|
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c  320 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC  320 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence            358888888888843443332     467888888666551   22223345678888888886664 355566666668


Q ss_pred             CCCcEEeccc
Q 015001          277 PLLEYLSMTK  286 (414)
Q Consensus       277 ~~L~~L~l~~  286 (414)
                      ++|+.|.+..
T Consensus       321 ~~l~~l~~~~  330 (482)
T KOG1947|consen  321 PNLRELKLLS  330 (482)
T ss_pred             cchhhhhhhh
Confidence            8777766554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.22  E-value=0.00011  Score=64.45  Aligned_cols=239  Identities=17%  Similarity=0.062  Sum_probs=118.1

Q ss_pred             hhhHHHHHHHH-HhCCCeEEEEEecCCcc---ccCCccccCCCcccEEEecCcccCCC------------CccccCcccc
Q 015001          101 ASLAGRCLGLA-IESEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP------------SENVKLFSLR  164 (414)
Q Consensus       101 ~~~i~~~l~~~-~~~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------------~~~~~l~~L~  164 (414)
                      ..++...+... ....+.+++++..+...   ..+...+.+-.+|+..+++.-...-.            .....||.|+
T Consensus        16 ~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~   95 (388)
T COG5238          16 KEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ   95 (388)
T ss_pred             cchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence            34555555443 34577777777632211   12333344446666666665321100            2344566666


Q ss_pred             eeEeeEEEc---ChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCCceEEEeecCCCceEeeeccceeeeEeee
Q 015001          165 KLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQ  238 (414)
Q Consensus       165 ~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~  238 (414)
                      +.+|+.|.+   ....+..++++...|++|.+.+|... .+   .++  ..|.+|-      ...-..+.|.|+++....
T Consensus        96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rig--kal~~la------~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIG--KALFHLA------YNKKAADKPKLEVVICGR  166 (388)
T ss_pred             eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHH--HHHHHHH------HHhhhccCCCceEEEecc
Confidence            666666666   22344555666666666666655321 11   011  0000000      000112456777777666


Q ss_pred             ecc--ccee---eeccccccCceeEeeccCCchHHHHh----hhccCCCCcEEecccccc--c-----ccccccccccce
Q 015001          239 TYL--FPIE---VNVSSCGNLKCLKFDFLPIEDEWLCN----GISKLPLLEYLSMTKCHK--L-----TSVRISSPCLKT  302 (414)
Q Consensus       239 ~~~--~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~c~~--~-----~~l~~~~~~L~~  302 (414)
                      +..  .+..   ..+..-.+|+.+.+..+.|....+..    .+..+.+|+.|+|.....  .     .......+.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            551  1110   11222247777777777776543322    235577788888777311  1     111124456777


Q ss_pred             EEeeccCCceE----e-----eccCCCeeeEEEeCcee------------EEeccCCccceEEEEee
Q 015001          303 LILECCDKLIQ----V-----EIETPNLSIFKYHGDLI------------SFSSNALSLSETSLCFS  348 (414)
Q Consensus       303 L~l~~c~~l~~----~-----~~~~p~L~~l~~~~~~~------------~~~~~~~~L~~L~l~~~  348 (414)
                      |.+.+|-...+    +     ....|+|..|...-+..            +.-.++|-|..|.+..|
T Consensus       247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN  313 (388)
T COG5238         247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN  313 (388)
T ss_pred             ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence            87777754221    1     23457777665543221            34456788888888766

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.16  E-value=3.1e-06  Score=77.95  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             CCCCCceEEEeecCCCceEee---eccceeeeEeeeecccceeeeccccccCceeEeeccCCc
Q 015001          206 NLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE  265 (414)
Q Consensus       206 ~l~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  265 (414)
                      ++++|..|+++++ ++..++.   -..+|++|+++.+.....+..++++ .|+.|.+.|+.+.
T Consensus       250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             ccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            4677888888877 5555553   3456888888888766677788888 8888888888754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.13  E-value=0.0004  Score=67.19  Aligned_cols=170  Identities=21%  Similarity=0.252  Sum_probs=100.5

Q ss_pred             ccCCCcccEEEecCcccCCC-CccccC-cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecC-CCCCCc
Q 015001          135 IFYVESLHVLELSYCKLQQP-SENVKL-FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLK  211 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~-~~~~~l-~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~-~l~~L~  211 (414)
                      +...+.++.|++.++.+... +....+ ++|+.|+++++.+..  +..-+..+|+|+.|.+.+|....--... ..++|+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence            33346678888887766443 333344 278888888877632  2122567888888888887654322222 457888


Q ss_pred             eEEEeecCCCceEeee--ccc-eeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc
Q 015001          212 EIILVNTSDIKRVEIK--TSN-VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (414)
Q Consensus       212 ~L~l~~~~~l~~~~~~--~p~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (414)
                      .|+++++ .+..++..  .++ |+++.++++........+..+.++..+.+.++.+..  +...+...+++++|+++++.
T Consensus       190 ~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         190 NLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             heeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccc
Confidence            8888877 55555542  343 788887777322233445666666666665555443  13345666778888777741


Q ss_pred             ccccc--cccccccceEEeeccCC
Q 015001          289 KLTSV--RISSPCLKTLILECCDK  310 (414)
Q Consensus       289 ~~~~l--~~~~~~L~~L~l~~c~~  310 (414)
                       +..+  .....+++.|+++++..
T Consensus       267 -i~~i~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         267 -ISSISSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             -ccccccccccCccCEEeccCccc
Confidence             2222  23556777777766443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.08  E-value=0.00014  Score=49.83  Aligned_cols=56  Identities=25%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             cccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeecc
Q 015001          140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC  196 (414)
Q Consensus       140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c  196 (414)
                      +|++|++++|.+...  ..+..+++|++|+++++.+..-. ...+..+|+|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence            566666666654321  34455666666666655542111 112455666666666555

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.02  E-value=0.0014  Score=62.16  Aligned_cols=134  Identities=16%  Similarity=0.266  Sum_probs=66.6

Q ss_pred             cCcccceeEeeEEEcChHHHHHHHhCCC-cccEEEeeccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEee
Q 015001          159 KLFSLRKLALREVCADDQAIASLISGCP-LIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH  237 (414)
Q Consensus       159 ~l~~L~~L~L~~~~~~~~~l~~ll~~~p-~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~  237 (414)
                      .+++++.|++++|.+.  .+.    ..| +|++|.+.+|..+..+.-.-.++|++|.+.+|..+..+   .++|++|.+.
T Consensus        50 ~~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~  120 (426)
T PRK15386         50 EARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIK  120 (426)
T ss_pred             HhcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeC
Confidence            3567777777766431  111    223 57777777776653332111256777777777544432   2456666665


Q ss_pred             eecccceeeeccccc-cCceeEeeccCCc-hHHHHhhhccC-CCCcEEecccccccccccccccccceEEeecc
Q 015001          238 QTYLFPIEVNVSSCG-NLKCLKFDFLPIE-DEWLCNGISKL-PLLEYLSMTKCHKLTSVRISSPCLKTLILECC  308 (414)
Q Consensus       238 ~~~~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~-~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c  308 (414)
                      +...    ..+..+| +|++|.+.++... .....   ..+ ++|+.|.+++|........-..+|+.|.++.+
T Consensus       121 ~n~~----~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        121 GSAT----DSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CCCC----cccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            4321    1223332 6666666432210 00000   112 46777877777543211123356777776553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.92  E-value=0.00087  Score=45.76  Aligned_cols=15  Identities=27%  Similarity=0.246  Sum_probs=6.5

Q ss_pred             ccccccCceeEeecc
Q 015001          248 VSSCGNLKCLKFDFL  262 (414)
Q Consensus       248 ~~~~~~L~~L~l~~~  262 (414)
                      +.++++|++|+++++
T Consensus        45 f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   45 FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTSTTESEEEETSS
T ss_pred             HcCCCCCCEEeCcCC
Confidence            334444444444443

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.82  E-value=0.00018  Score=66.47  Aligned_cols=77  Identities=21%  Similarity=0.199  Sum_probs=42.9

Q ss_pred             hccCCCCcEEeccccccccccc----ccccccceEEeeccCC--c-eEeeccCCCeeeEEEeCcee-----EEeccCCcc
Q 015001          273 ISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDK--L-IQVEIETPNLSIFKYHGDLI-----SFSSNALSL  340 (414)
Q Consensus       273 ~~~~~~L~~L~l~~c~~~~~l~----~~~~~L~~L~l~~c~~--l-~~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L  340 (414)
                      +..+|+|+.|++++. .+..+.    .....++.|.+..+..  . ..+..+..+|+.|.+.|+.+     ..++.+.+|
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            344566666666663 112221    1334555555544432  1 11233445677777777766     567777888


Q ss_pred             ceEEEEeecc
Q 015001          341 SETSLCFSSH  350 (414)
Q Consensus       341 ~~L~l~~~~~  350 (414)
                      .+|++-.|+.
T Consensus       349 ~~l~l~~Np~  358 (498)
T KOG4237|consen  349 STLNLLSNPF  358 (498)
T ss_pred             eeeehccCcc
Confidence            8888877743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.75  E-value=0.00081  Score=65.07  Aligned_cols=166  Identities=22%  Similarity=0.235  Sum_probs=113.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCC-cccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVE-SLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      ..++.+++..  .....+|....... +|+.|+++++.+... .....+++|+.|++.++.+.+  +.......++|+.|
T Consensus       116 ~~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhe
Confidence            3566666654  34557777666664 999999999988754 467899999999999998743  33323478999999


Q ss_pred             EeeccCCcceeec--CCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchH
Q 015001          192 EIRSCEGLESLDL--VNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE  267 (414)
Q Consensus       192 ~l~~c~~~~~l~i--~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  267 (414)
                      .++++... .+..  .....|+.|.+.++..+..+.  ....++..+.+..+........++.+++++.|++.++.+..-
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence            99988543 2211  233458888888773222222  245566666655554322245677888899999998887663


Q ss_pred             HHHhhhccCCCCcEEecccc
Q 015001          268 WLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~c  287 (414)
                      ..   +....+++.|++++.
T Consensus       271 ~~---~~~~~~l~~L~~s~n  287 (394)
T COG4886         271 SS---LGSLTNLRELDLSGN  287 (394)
T ss_pred             cc---ccccCccCEEeccCc
Confidence            22   667788999998873

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.67  E-value=0.00022  Score=62.45  Aligned_cols=104  Identities=26%  Similarity=0.266  Sum_probs=72.1

Q ss_pred             CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEe
Q 015001          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l  193 (414)
                      .++++.++++....-.+....-....|+.|++.++.+.+...+..+|+||+|.++.+.+ ....+.-++..||+|.+|.+
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l   98 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL   98 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence            44455555544344445554555678888888888887777788889999999999855 33455556778899999999


Q ss_pred             eccCCcc--ee-ecCCCCCCceEEEeec
Q 015001          194 RSCEGLE--SL-DLVNLSNLKEIILVNT  218 (414)
Q Consensus       194 ~~c~~~~--~l-~i~~l~~L~~L~l~~~  218 (414)
                      ++|..-.  .+ .+..+++|..|++.+|
T Consensus        99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   99 SGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             cCCccccccccchhhhhcchhhhhcccC
Confidence            9885431  11 2334677888888888

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.51  E-value=0.00049  Score=60.31  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=22.7

Q ss_pred             cccEEEeeccCCcceeecCCCCCCceEEEeec-----CCCceEeeeccceeeeEeeeec
Q 015001          187 LIEYLEIRSCEGLESLDLVNLSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTY  240 (414)
Q Consensus       187 ~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~-----~~l~~~~~~~p~L~~L~l~~~~  240 (414)
                      .|+.|++.++..........+|+|+.|.++.+     ..+..+...+|+|+++.++++.
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            34444444333222223333455555555544     1222222234555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.45  E-value=0.00043  Score=64.05  Aligned_cols=193  Identities=18%  Similarity=0.123  Sum_probs=101.9

Q ss_pred             CCeEEEEEecCCccccCCccc-cCCCcccEEEecCcccCC--CCccccCcccceeEeeE-EEcCh---HHH---------
Q 015001          115 EVKELVLVHWRSERRNLPEII-FYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALRE-VCADD---QAI---------  178 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~-~~~~~---~~l---------  178 (414)
                      +..+++|+.  .....+|+.. ...++|+.|+|+.+.+..  +..+.++++|.+|.+.+ +.+++   ..+         
T Consensus        68 ~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            556666654  4556788754 457999999999987753  36677888888888877 55532   111         


Q ss_pred             -----------HHHHhCCCcccEEEeeccCCc--ceeecCCCCCCceEEEeecC-----CCceEe-------e-----ec
Q 015001          179 -----------ASLISGCPLIEYLEIRSCEGL--ESLDLVNLSNLKEIILVNTS-----DIKRVE-------I-----KT  228 (414)
Q Consensus       179 -----------~~ll~~~p~Le~L~l~~c~~~--~~l~i~~l~~L~~L~l~~~~-----~l~~~~-------~-----~~  228 (414)
                                 +..+..+|+|..|.+.++..-  ..-.+..+..++.+.+..++     +++...       +     .+
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence                       222345567777776655221  11123334445554443321     000000       0     00


Q ss_pred             --------------------cceeee--Eeeee--cccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001          229 --------------------SNVNAL--AIHQT--YLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (414)
Q Consensus       229 --------------------p~L~~L--~l~~~--~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  283 (414)
                                          -.++++  .+.+.  ..... ...|..+++|++|+++++.++.-. ...+.....|+.|.
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~eL~  304 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQELY  304 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-hhhhcchhhhhhhh
Confidence                                001111  01110  00000 123677899999999999876522 22244556677777


Q ss_pred             cccc--cccc-cccccccccceEEeeccCC
Q 015001          284 MTKC--HKLT-SVRISSPCLKTLILECCDK  310 (414)
Q Consensus       284 l~~c--~~~~-~l~~~~~~L~~L~l~~c~~  310 (414)
                      |...  ..+. ........|+.|++.++..
T Consensus       305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i  334 (498)
T KOG4237|consen  305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQI  334 (498)
T ss_pred             cCcchHHHHHHHhhhccccceeeeecCCee
Confidence            7663  1111 1223566777777777644

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.41  E-value=0.0064  Score=57.88  Aligned_cols=32  Identities=16%  Similarity=0.348  Sum_probs=16.4

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcc
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCK  150 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~  150 (414)
                      .+++.|+++.+  ....+|. +  -.+|++|.+++|.
T Consensus        52 ~~l~~L~Is~c--~L~sLP~-L--P~sLtsL~Lsnc~   83 (426)
T PRK15386         52 RASGRLYIKDC--DIESLPV-L--PNELTEITIENCN   83 (426)
T ss_pred             cCCCEEEeCCC--CCcccCC-C--CCCCcEEEccCCC
Confidence            46666666654  2233331 1  1356666666653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.11  E-value=0.015  Score=49.28  Aligned_cols=55  Identities=15%  Similarity=0.171  Sum_probs=30.6

Q ss_pred             CcccEEEecCcccCCCCccccCcccceeEeeEEEcCh--HHHHHHHhCCCcccEEEeecc
Q 015001          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADD--QAIASLISGCPLIEYLEIRSC  196 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~l~~ll~~~p~Le~L~l~~c  196 (414)
                      .+...++|+++.+.....+..++.|.+|.|.+|.++.  ..+.   .-.|+|..|.+.+|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNN   98 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCc
Confidence            4455566666655444455566667777777666622  2222   23566666666655

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.06  E-value=0.0088  Score=32.81  Aligned_cols=25  Identities=44%  Similarity=0.852  Sum_probs=22.2

Q ss_pred             ccceeEeeEEEc-ChHHHHHHHhCCC
Q 015001          162 SLRKLALREVCA-DDQAIASLISGCP  186 (414)
Q Consensus       162 ~L~~L~L~~~~~-~~~~l~~ll~~~p  186 (414)
                      +||+|+|..+.+ ++..+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 5568999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PLN03150 hypothetical protein; Provisional

Probab=95.89  E-value=0.0077  Score=61.74  Aligned_cols=101  Identities=12%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             CCceEEEeecCCCc-eE---eeeccceeeeEeeeec-ccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001          209 NLKEIILVNTSDIK-RV---EIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (414)
Q Consensus       209 ~L~~L~l~~~~~l~-~~---~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  283 (414)
                      .++.|++.++ .+. .+   ...+++|+.|+++++. ...++..++.+++|+.|++++|.+.+. ++..+..+++|+.|+
T Consensus       419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEE
Confidence            3677777776 222 11   1256889999998887 335566788899999999999888764 334467889999999


Q ss_pred             ccccccccccccc----ccccceEEeeccCCc
Q 015001          284 MTKCHKLTSVRIS----SPCLKTLILECCDKL  311 (414)
Q Consensus       284 l~~c~~~~~l~~~----~~~L~~L~l~~c~~l  311 (414)
                      ++++.....++..    ..++..+++.+|..+
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccc
Confidence            9987554455432    234556777766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.86  E-value=0.004  Score=39.24  Aligned_cols=15  Identities=27%  Similarity=0.437  Sum_probs=7.0

Q ss_pred             HhCCCcccEEEeecc
Q 015001          182 ISGCPLIEYLEIRSC  196 (414)
Q Consensus       182 l~~~p~Le~L~l~~c  196 (414)
                      ++.+|+|+.|++++|
T Consensus        20 l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen   20 LSNLPNLETLNLSNN   34 (44)
T ss_dssp             GTTCTTSSEEEETSS
T ss_pred             HhCCCCCCEEEecCC
Confidence            344444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.82  E-value=0.0059  Score=38.44  Aligned_cols=33  Identities=36%  Similarity=0.433  Sum_probs=16.8

Q ss_pred             cCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      +|++|+++++.+.+  ++..+..+++|+.|+++++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            45555555555543  3333455666666666654

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.82  E-value=0.01  Score=50.28  Aligned_cols=64  Identities=20%  Similarity=0.298  Sum_probs=49.0

Q ss_pred             ccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCc
Q 015001          135 IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGL  199 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~  199 (414)
                      +...+.|..|.++++.+...  ....-+|+|++|.|.+|.+ .-+++.. +..||.|++|.+-+++..
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchh
Confidence            34568999999999987533  3345678999999999988 4445555 578999999999888654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=0.00075  Score=59.66  Aligned_cols=95  Identities=22%  Similarity=0.222  Sum_probs=63.7

Q ss_pred             CCCceEEEeecCCCceEee--eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecc
Q 015001          208 SNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT  285 (414)
Q Consensus       208 ~~L~~L~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  285 (414)
                      .+.++|+..+| ++..|.+  .+|.||.|.++-+.... ...+..|.+|++|.|..|.|.+-+-..-+.++|+|++|-|.
T Consensus        19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            45666667776 5555554  57788888887766222 33567788888888888887765545557888888888887


Q ss_pred             c--cc-ccc-----cccccccccceEE
Q 015001          286 K--CH-KLT-----SVRISSPCLKTLI  304 (414)
Q Consensus       286 ~--c~-~~~-----~l~~~~~~L~~L~  304 (414)
                      .  |. ..+     .+...+|+|++|+
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            7  31 111     2334678888885

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.78  E-value=0.003  Score=57.14  Aligned_cols=36  Identities=36%  Similarity=0.580  Sum_probs=34.6

Q ss_pred             CccCCCCC----HHHHHHHhccCChHHHHHhhhcccCchh
Q 015001            9 VDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQ   44 (414)
Q Consensus         9 ~D~i~~LP----deiL~~Ils~L~~~d~~~~~~VskrW~~   44 (414)
                      .|.++.||    |++...||+||+..+++.|.+|||+|+.
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            68999999    9999999999999999999999999986

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.77  E-value=0.007  Score=53.52  Aligned_cols=120  Identities=15%  Similarity=0.061  Sum_probs=73.3

Q ss_pred             CChhhHHHHHHHHHh--CCCeEEEEEe--cCCccccCC-------ccccCCCcccEEEecCcccCCC------CccccCc
Q 015001           99 ENASLAGRCLGLAIE--SEVKELVLVH--WRSERRNLP-------EIIFYVESLHVLELSYCKLQQP------SENVKLF  161 (414)
Q Consensus        99 ~~~~~i~~~l~~~~~--~~l~~L~l~~--~~~~~~~lp-------~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~  161 (414)
                      ..+.....|+....+  ++++...++.  .+....++|       ..+..|+.|+..+|+.+.+...      ....+-.
T Consensus        41 tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t  120 (388)
T COG5238          41 TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSST  120 (388)
T ss_pred             cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCC
Confidence            445667788877654  4666666554  122222333       3455799999999999977543      2245567


Q ss_pred             ccceeEeeEEEcChH-------HHH-----HHHhCCCcccEEEeeccCCcce------eecCCCCCCceEEEeec
Q 015001          162 SLRKLALREVCADDQ-------AIA-----SLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNT  218 (414)
Q Consensus       162 ~L~~L~L~~~~~~~~-------~l~-----~ll~~~p~Le~L~l~~c~~~~~------l~i~~l~~L~~L~l~~~  218 (414)
                      .|++|.|++|..+..       ++.     .-..+-|.||......|.....      ..+.+..+|+.+.+..+
T Consensus       121 ~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN  195 (388)
T COG5238         121 DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN  195 (388)
T ss_pred             CceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec
Confidence            899999999977321       111     1235678888887776644311      11222357777777766

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.72  E-value=0.00095  Score=59.04  Aligned_cols=96  Identities=23%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEe
Q 015001          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++.|+.-.|+-..+   +....++.|+.|.|+-+.+.+...+..|.+|+.|.|..|.+ +-..+.. +.+.|+|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhh
Confidence            555555444332222   22345688999999999988878889999999999999988 3334443 689999999999


Q ss_pred             eccCCcce-------eecCCCCCCceEE
Q 015001          194 RSCEGLES-------LDLVNLSNLKEII  214 (414)
Q Consensus       194 ~~c~~~~~-------l~i~~l~~L~~L~  214 (414)
                      ..|+....       ..+..+|+|++|+
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            88765421       2345589999885

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.30  E-value=0.0032  Score=62.88  Aligned_cols=73  Identities=22%  Similarity=0.187  Sum_probs=36.7

Q ss_pred             CCCCcEEeccccccccc-ccccccccceEEeeccCC--ceEeeccCCCeeeEEEeCcee---EEeccCCccceEEEEee
Q 015001          276 LPLLEYLSMTKCHKLTS-VRISSPCLKTLILECCDK--LIQVEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS  348 (414)
Q Consensus       276 ~~~L~~L~l~~c~~~~~-l~~~~~~L~~L~l~~c~~--l~~~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l~~~  348 (414)
                      +|.|+.|+|+....... ....+++|++|+|+.|..  +..+....-.|+.|.+.++..   ..+.|+.+|+.|+++.|
T Consensus       186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHh
Confidence            44555555555211110 122455555555555432  111211112355566666554   66777788888888777

>PLN03150 hypothetical protein; Provisional

Probab=95.27  E-value=0.018  Score=59.06  Aligned_cols=100  Identities=14%  Similarity=0.103  Sum_probs=70.3

Q ss_pred             ceeeeEeeeec-ccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEe
Q 015001          230 NVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLIL  305 (414)
Q Consensus       230 ~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l  305 (414)
                      .++.|+++++. ...++..++.+++|+.|+++++.+.+. ++..+..+++|+.|+|+++.....++   ..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            36778887766 334556788899999999999887653 34447889999999999975544444   37789999999


Q ss_pred             eccCCceEeeccC----CCeeeEEEeCce
Q 015001          306 ECCDKLIQVEIET----PNLSIFKYHGDL  330 (414)
Q Consensus       306 ~~c~~l~~~~~~~----p~L~~l~~~~~~  330 (414)
                      ++|.....++...    .++..+.+.++.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            9987655554322    234455565554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.77  E-value=0.0066  Score=51.32  Aligned_cols=89  Identities=20%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             cCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcceee---
Q 015001          130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD---  203 (414)
Q Consensus       130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~---  203 (414)
                      .+|.....-..++.++-+++.+...  ....+++.++.|.+.+|.. .+..+..+-.-.|+|+.|+|++|+.++.-.   
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            4554333334567777777654332  3456778888888888876 777788777778888888888887765432   


Q ss_pred             cCCCCCCceEEEeec
Q 015001          204 LVNLSNLKEIILVNT  218 (414)
Q Consensus       204 i~~l~~L~~L~l~~~  218 (414)
                      +..+++|+.|.+.+-
T Consensus       172 L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDL  186 (221)
T ss_pred             HHHhhhhHHHHhcCc
Confidence            233577777766654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=94.62  E-value=0.0025  Score=61.88  Aligned_cols=137  Identities=18%  Similarity=0.215  Sum_probs=87.7

Q ss_pred             ccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce-eecC
Q 015001          127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-LDLV  205 (414)
Q Consensus       127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~-l~i~  205 (414)
                      ....+|..+.+...|+.|+|+.+.+...+...++=-|+.|-+.+++.+.....  +...+.|..|+.+.|....- -.+.
T Consensus       109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~--ig~~~tl~~ld~s~nei~slpsql~  186 (722)
T KOG0532|consen  109 CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE--IGLLPTLAHLDVSKNEIQSLPSQLG  186 (722)
T ss_pred             cceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc--cccchhHHHhhhhhhhhhhchHHhh
Confidence            44566777777777778888777665443333334477777777766221111  33556677777776644321 1344


Q ss_pred             CCCCCceEEEeecCCCceEee--eccceeeeEeeeecccceeeeccccccCceeEeeccCCch
Q 015001          206 NLSNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED  266 (414)
Q Consensus       206 ~l~~L~~L~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (414)
                      .+.+|+.|.++.+ .+..++-  ..-.|.+|+++.+....+++.|.++..|+.|.|.+|.+..
T Consensus       187 ~l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  187 YLTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hHHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            5677777777776 3333322  1334788888888777788889999999999998888664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.92  E-value=0.0084  Score=58.39  Aligned_cols=80  Identities=21%  Similarity=0.160  Sum_probs=42.4

Q ss_pred             ccCCCcccEEEecCcccCCCCc-cccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCce
Q 015001          135 IFYVESLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKE  212 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~  212 (414)
                      +..+++|+.|++.++.+..... ...+++|++|+++++.+ ....    +..++.|+.|++.+|.....-.+..+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISDISGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc----hhhccchhhheeccCcchhccCCccchhhhc
Confidence            3345666666666666654433 55566666666666665 2222    2334446666666664432222333455555


Q ss_pred             EEEeec
Q 015001          213 IILVNT  218 (414)
Q Consensus       213 L~l~~~  218 (414)
                      +++.++
T Consensus       167 l~l~~n  172 (414)
T KOG0531|consen  167 LDLSYN  172 (414)
T ss_pred             ccCCcc
Confidence            555555

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.88  E-value=0.027  Score=50.76  Aligned_cols=38  Identities=26%  Similarity=0.506  Sum_probs=32.1

Q ss_pred             CCCccCCCCCHHHHHHHhcc-----CChHHHHHhhhcccCchh
Q 015001            7 LEVDGISTLPEPILHHILSF-----LPFKEVAQTCLLSKRWKQ   44 (414)
Q Consensus         7 ~~~D~i~~LPdeiL~~Ils~-----L~~~d~~~~~~VskrW~~   44 (414)
                      +..+.|..||||||..||..     ++.+++.++++|||.|+.
T Consensus       102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            33455789999999999975     567999999999999985

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.54  E-value=0.045  Score=51.52  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=33.7

Q ss_pred             cCCCCCHHHHHHHhccCC-hHHHHHhhhcccCchhhccc
Q 015001           11 GISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT   48 (414)
Q Consensus        11 ~i~~LPdeiL~~Ils~L~-~~d~~~~~~VskrW~~lw~~   48 (414)
                      +.++||+|+|..|..+|+ .-|++|.+.|||.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            478999999999999996 67999999999999986544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=92.75  E-value=0.0036  Score=60.80  Aligned_cols=154  Identities=18%  Similarity=0.136  Sum_probs=98.2

Q ss_pred             ccccCCccccCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCc-ceeec
Q 015001          127 ERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL-ESLDL  204 (414)
Q Consensus       127 ~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~-~~l~i  204 (414)
                      ..-++|..+..|..|+.+.+..+.+. .+....++..|+.|+|+.++...-...  +..|| |+.|.++++... ....+
T Consensus        86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lp-Lkvli~sNNkl~~lp~~i  162 (722)
T KOG0532|consen   86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLP-LKVLIVSNNKLTSLPEEI  162 (722)
T ss_pred             ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCc-ceeEEEecCccccCCccc
Confidence            44567776667777888877765443 335677888899999988876322111  33344 677777776543 12245


Q ss_pred             CCCCCCceEEEeecCCCceEe---eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcE
Q 015001          205 VNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (414)
Q Consensus       205 ~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  281 (414)
                      +..++|..|+.+.| .+..+.   ....+|+.|.+..+....++-.+. .-.|..||+++|++..  ++.-+..+..|++
T Consensus       163 g~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  163 GLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQV  238 (722)
T ss_pred             ccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhhee
Confidence            56688999998888 333333   245667777776666333444444 3357788888888764  3333566778888


Q ss_pred             Eecccc
Q 015001          282 LSMTKC  287 (414)
Q Consensus       282 L~l~~c  287 (414)
                      |.|.+.
T Consensus       239 l~LenN  244 (722)
T KOG0532|consen  239 LQLENN  244 (722)
T ss_pred             eeeccC
Confidence            888873

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.38  E-value=0.063  Score=52.31  Aligned_cols=80  Identities=21%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcceee--cCCCCCCc
Q 015001          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD--LVNLSNLK  211 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~--i~~l~~L~  211 (414)
                      +..+++|++|+++++.+........++.|+.|++.+|.+ ....    +..+++|+.+++++|.....-.  ...+.+++
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~  189 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDELSELISLE  189 (414)
T ss_pred             hhhhhcchheeccccccccccchhhccchhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhhhhhccchH
Confidence            344566666666666655545555555566666666655 1111    1225555666665554332111  23345555


Q ss_pred             eEEEeec
Q 015001          212 EIILVNT  218 (414)
Q Consensus       212 ~L~l~~~  218 (414)
                      .+.+.++
T Consensus       190 ~l~l~~n  196 (414)
T KOG0531|consen  190 ELDLGGN  196 (414)
T ss_pred             HHhccCC
Confidence            5555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.30  E-value=0.11  Score=44.17  Aligned_cols=59  Identities=20%  Similarity=0.191  Sum_probs=27.6

Q ss_pred             cccccCceeEeeccC-CchHHHHhhhccCCCCcEEecccccccccccc----cccccceEEeec
Q 015001          249 SSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILEC  307 (414)
Q Consensus       249 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~----~~~~L~~L~l~~  307 (414)
                      .+++.++.|.+.+|. +.+..+..+-.-.|+|+.|+|++|..+++-..    .+++|+.|.+.+
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            334444445554443 23333444444455666666666544444322    344555554443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=89.19  E-value=0.19  Score=50.30  Aligned_cols=40  Identities=28%  Similarity=0.475  Sum_probs=36.8

Q ss_pred             cCCCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhh
Q 015001            6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (414)
Q Consensus         6 ~~~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~l   45 (414)
                      ....|.++.||-|+..+||+||+.++++++++||+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3457999999999999999999999999999999999864

>PF13013 F-box-like_2: F-box-like domain

Probab=83.51  E-value=0.6  Score=35.72  Aligned_cols=30  Identities=13%  Similarity=0.140  Sum_probs=26.8

Q ss_pred             cCCCCCHHHHHHHhccCChHHHHHhhhccc
Q 015001           11 GISTLPEPILHHILSFLPFKEVAQTCLLSK   40 (414)
Q Consensus        11 ~i~~LPdeiL~~Ils~L~~~d~~~~~~Vsk   40 (414)
                      .+.+||+||+..||.+-+..+...+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            477899999999999999999988887776

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.20  E-value=1.1  Score=23.69  Aligned_cols=21  Identities=29%  Similarity=0.202  Sum_probs=13.2

Q ss_pred             cccCceeEeeccCCchHHHHh
Q 015001          251 CGNLKCLKFDFLPIEDEWLCN  271 (414)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~  271 (414)
                      +++|++|+|+++.++++....
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHH
Confidence            467888888888877766544

...

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=81.65  E-value=0.69  Score=30.02  Aligned_cols=31  Identities=19%  Similarity=0.234  Sum_probs=26.5

Q ss_pred             HHhhhhcceeeEEeeecccchhhhHHHHHHh
Q 015001          365 LAMFQKFSKVLNLQCREGELQMFGLAVRVFQ  395 (414)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~  395 (414)
                      ....++.+.+.++.|.+.|+++++|+++++.
T Consensus        12 l~s~Lk~v~~~~f~g~~~e~~f~~yil~na~   42 (51)
T PF08387_consen   12 LLSHLKFVEIKGFRGEENELEFAKYILENAP   42 (51)
T ss_pred             hhheeEEEEEEeeeCcHHHHHHHHHHHhhhh
Confidence            3456778889999999999999999999874

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=80.24  E-value=0.54  Score=37.05  Aligned_cols=57  Identities=11%  Similarity=0.146  Sum_probs=20.1

Q ss_pred             cCCCcccEEEecCcccCC-CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEee
Q 015001          136 FYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (414)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~  194 (414)
                      ..|++|+.+.+...-... ...+..+++|+.+++... +.. .-...+.+|+.|+.+.+.
T Consensus         9 ~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    9 YNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEET
T ss_pred             hCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccc-cceeeeeccccccccccc
Confidence            345566666665421111 133445555555555432 100 001123455555555553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	7e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 48/309 (15%), Positives = 111/309 (35%), Gaps = 47/309 (15%)

Query: 12  ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSL 71
             +LP+ +L  I S L   E+ +   + KRW +            + ++    + +  + 
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR------------LASDESLWQTLDLTG 56

Query: 72  EPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNL 131
           +    +   +++S    +         +  +       +      + + L +   E   L
Sbjct: 57  KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV------QHMDLSNSVIEVSTL 110

Query: 132 PEIIFYVESLHVLELSYCKLQQPSENV--KLFSLRKLALREVCA-DDQAIASLISGCPLI 188
             I+     L  L L   +L  P  N   K  +L +L L       + A+ +L+S C  +
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 189 EYLEIRSC-----EGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP 243
           + L +  C     + ++         + ++ L          ++ S+++ L      L  
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK----NLQKSDLSTLVRRCPNL-- 224

Query: 244 IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS----PC 299
           + +++S    LK          ++       +L  L++LS+++C+ +    +      P 
Sbjct: 225 VHLDLSDSVMLK----------NDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273

Query: 300 LKTLILECC 308
           LKTL +   
Sbjct: 274 LKTLQVFGI 282

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 57/335 (17%), Positives = 104/335 (31%), Gaps = 40/335 (11%)

Query: 7   LEVDGISTLPEPILHHILSFLPFKEVAQTCLL-SKRWKQVW-QTFPDVEVGGM-FTNPRK 63
           ++     + PE +L H+ SF+   +   +  L  K W ++       V +G     +P  
Sbjct: 1   MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVH 123
                  +    L  +                  P   +++     L      +E+ L  
Sbjct: 61  VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL------EEIRLKR 114

Query: 124 WRSERRNLPEIIFYVESLHVLELSYCK------LQQPSENVKLFSLRKLALRE---VCAD 174
                  L  I    ++  VL LS C+      L   +   +  +L++L LRE       
Sbjct: 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR--NLKELDLRESDVDDVS 172

Query: 175 DQAIASLISGCPLIEYLEIRSC------EGLESLDLVNLSNLKEIIL---VNTSDIKRVE 225
              ++        +  L I           LE L +    NLK + L   V    +  + 
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRAVPLEKLATLL 231

Query: 226 IKTSNVNALAIHQ-------TYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278
            +   +  L                + V +S C  L+CL   F      +L    S    
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSR 290

Query: 279 LEYLSMTKCHKLTS--VRISSPCLKTLILECCDKL 311
           L  L+++     +   V++   C K   L   D +
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 3e-10
 Identities = 74/463 (15%), Positives = 158/463 (34%), Gaps = 130/463 (28%)

Query: 1   MMRIGVL---EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVG-- 55
           M +  +L   E+D I    + +   +  F          LLSK+ +++ Q F  VE    
Sbjct: 41  MPK-SILSKEEIDHIIMSKDAVSGTLRLF--------WTLLSKQ-EEMVQKF--VEEVLR 88

Query: 56  ---GMFTNPRKSKEILTSLE-------------------PALLNRQRKMISIKKFSLELD 93
                  +P K+++   S+                       ++R +  + +++  LEL 
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 94  LINSPENASLAGRCLG-----LAIESEVKELVL------VHWRS-ERRNLPE-IIFYVES 140
                +N  + G  LG     +A++  +   V       + W + +  N PE ++  ++ 
Sbjct: 149 ---PAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 141 L-HVLELSYCKLQQPSENVKL-FSLRKLALREVCADDQAIASLISGCPLIEYL-EIRSCE 197
           L + ++ ++      S N+KL     +  LR +         L     L+  L  +++ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LV--LLNVQNAK 257

Query: 198 GLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257
              + +L    + K  IL+ T             + L+   T    ++ +  +       
Sbjct: 258 AWNAFNL----SCK--ILLTTRFK-------QVTDFLSAATTTHISLDHHSMT------- 297

Query: 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL-TSVRISSPCLKTLILECCDKLIQVEI 316
                P E + L        LL+YL   +   L   V  ++P   ++I E     I+  +
Sbjct: 298 ---LTPDEVKSL--------LLKYLDC-RPQDLPREVLTTNPRRLSIIAE----SIRDGL 341

Query: 317 ETPNLSIFKY-----HGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKF 371
            T +   +K+        +I  S N L  +E                 + F+ L++F   
Sbjct: 342 ATWDN--WKHVNCDKLTTIIESSLNVLEPAEYR---------------KMFDRLSVFPPS 384

Query: 372 SKVLNLQCREGELQMFGLAVRVFQSQMFWMACFGRHLMQRWYQ 414
           + +         L +    V      +         L+++  +
Sbjct: 385 AHI-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 45/354 (12%), Positives = 100/354 (28%), Gaps = 43/354 (12%)

Query: 12  ISTLPEPILHHILSFLPFKEVAQTCLL-SKRWKQV-WQTFPDVEVGGMFT-NPRKSKEIL 68
                + ++  +++++   +   +  L  +RW ++  +T   V +   +T  P +     
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRC--------------------L 108
            +L    L  + +               +P    ++                       L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 109 GLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQ---------PSENV 158
             A   +++ L L          L  I+ +   +  L +      +            N 
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV----NLSNLKEII 214
            L  L            + + ++   C  +  +++   E LE +       NL       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 215 LVNTSDIKRVEIKTSN---VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271
           L     +    +       +  L +       + +       ++ L   +  +E E  C 
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312

Query: 272 GISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLS 322
            I K P LE L          + +       LK L +E       +E E   +S
Sbjct: 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 8  EVDGISTLPEPILHHILSFLPFKEVAQTC-LLSKRWKQV 45
           V+ ++ LPEP+L  +L+ LP  E+ Q C L+  RWK++
Sbjct: 47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 50/251 (19%), Positives = 78/251 (31%), Gaps = 26/251 (10%)

Query: 68  LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSE 127
                 A  NR          +       +          L  A +     L L      
Sbjct: 35  WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL--RSVP 92

Query: 128 RRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCP 186
               P+  F +  L  + +    L + P    +   L  L L              +  P
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL--------------ARNP 138

Query: 187 LIEYL--EIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKRVEIKTSNVNALAIHQTYLFP 243
           L   L   I S   L  L +     L E+   + ++D         N+ +L +  T +  
Sbjct: 139 LRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197

Query: 244 IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV--RISS-PCL 300
           +  ++++  NLK LK    P+    L   I  LP LE L +  C  L +          L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 301 KTLILECCDKL 311
           K LIL+ C  L
Sbjct: 256 KRLILKDCSNL 266

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
            +LP+ +L  I S L   E+ +   + KRW ++
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTF 49
           ++ LP  +  +ILSFL   ++ Q    +  W +       W+ F
Sbjct: 4  TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 14/169 (8%)

Query: 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL-ISGCPLIEYLEIRSCE 197
            +L  L+     +   +   KL  L KL           I +L +S    + YL   S +
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTGLTKLIC-----TSNNITTLDLSQNTNLTYLACDSNK 96

Query: 198 GLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257
            L +LD+  L+ L  +        K    +   +  L   +  L   E++VS    L  L
Sbjct: 97  -LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTL--TEIDVSHNTQLTEL 153

Query: 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS-PCLKTLIL 305
                    +     ++    L  L  +   K+T + +S    L  L  
Sbjct: 154 DCHLNKKITK---LDVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNC 198

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 123 HWRSERRNLPEIIFYVESLHVLELSYCKL--QQPSENVKLFSLRKLALREVCA-DDQAIA 179
            W+ +  +LP        +  ++ +   +          L  + K+ L +    +D  + 
Sbjct: 45  RWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE 104

Query: 180 SLISGCPL---IEYLEIRSC-----EGLESLDLVNLSNLKEIILVNTSDIKRVEI 226
            L     L   +  +EI SC     +G+ +  L +  NLK + L +   +K  E 
Sbjct: 105 RLSQLENLQKSMLEMEIISCGNVTDKGIIA--LHHFRNLKYLFLSDLPGVKEKEK 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.55
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.46
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.46
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.45
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.44
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.44
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.41
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.32
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.3
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.28
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.28
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.26
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.22
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.21
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.2
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.2
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.2
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.2
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.2
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.03
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.0
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.99
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.98
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.98
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.92
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.86
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.84
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.65
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.64
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.61
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.47
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.26
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.21
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.16
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.01
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.01
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.0
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.0
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.0
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.91
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.82
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.77
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.51
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.02
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.81
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.64
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.89
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.77
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	84.18

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=2e-23  Score=211.05  Aligned_cols=182  Identities=11%  Similarity=0.156  Sum_probs=93.7

Q ss_pred             CCCccCC----CCCHHHHHHHhccC-ChHHHHHhhhcccCchhhccccce-eeeeccccCCC------------------
Q 015001            7 LEVDGIS----TLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPD-VEVGGMFTNPR------------------   62 (414)
Q Consensus         7 ~~~D~i~----~LPdeiL~~Ils~L-~~~d~~~~~~VskrW~~lw~~~~~-l~~~~~~~~~~------------------   62 (414)
                      ++.|+++    +||||++.+||+|| +.+|++++++|||||++++...+. +.+...+....                  
T Consensus         4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~   83 (592)
T 3ogk_B            4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK   83 (592)
T ss_dssp             --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECS
T ss_pred             hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCC
Confidence            3456666    89999999999999 899999999999999987533222 22211111000                  


Q ss_pred             -c----------hhh-HHHHHHHHHhccccCCCCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecC-Cccc
Q 015001           63 -K----------SKE-ILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SERR  129 (414)
Q Consensus        63 -~----------~~~-f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~-~~~~  129 (414)
                       .          ... ....+..+.    .....++.+.++..     ...+..-.|+......++++|++..+. ....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~-----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~  154 (592)
T 3ogk_B           84 PRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRM-----IVSDLDLDRLAKARADDLETLKLDKCSGFTTD  154 (592)
T ss_dssp             CGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESC-----BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHH
T ss_pred             cchhhcccccccccccchHHHHHHH----hhCCCCCeEEeecc-----EecHHHHHHHHHhccccCcEEECcCCCCcCHH
Confidence             0          000 000111111    01234444444422     112222333333333346666665532 1112


Q ss_pred             cCCccccCCCcccEEEecCcccCCC------CccccCcccceeEeeEEEcC---hHHHHHHHhCCCcccEEEeeccC
Q 015001          130 NLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSCE  197 (414)
Q Consensus       130 ~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~~p~Le~L~l~~c~  197 (414)
                      .++.....|++|++|++++|.+...      .....+++|++|+++++.++   ...+..++.+||+|++|++.+|.
T Consensus       155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            2333334567777777777755322      12345677777777666653   45666667777777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.1e-23  Score=197.81  Aligned_cols=235  Identities=18%  Similarity=0.206  Sum_probs=126.9

Q ss_pred             CCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhccccceeeeeccccCCCchhhHHHHHHHHHhccccCCCCeee
Q 015001            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK   87 (414)
Q Consensus         8 ~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~~~~l~~~~~~~~~~~~~~f~~~v~~~l~~~~~~~~~l~~   87 (414)
                      +...+++||||++.+||+||+.+|+++++.|||+|+++... |.                                .++.
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~--------------------------------~~~~   51 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES--------------------------------LWQT   51 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST--------------------------------TSSE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch--------------------------------hhee
Confidence            45668999999999999999999999999999999997432 11                                1111


Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCC---CCccccCcccc
Q 015001           88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ---PSENVKLFSLR  164 (414)
Q Consensus        88 l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~l~~L~  164 (414)
                      +.+.  ...  ..    +..+.....++++.+++...  .....+..++.+++|++|++++|.+..   +.....+++|+
T Consensus        52 l~l~--~~~--~~----~~~~~~~~~~~l~~L~l~~n--~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           52 LDLT--GKN--LH----PDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             EECT--TCB--CC----HHHHHHHHHTTCSEEECTTC--EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             eccc--ccc--CC----HHHHHhhhhccceEEEcCCc--cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            1111  000  00    12233333456777766542  122233335566777777777776532   13455677777


Q ss_pred             eeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce--e--ecCCCCCCceEEEeecCCCceE-----eeecc-ceeee
Q 015001          165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--L--DLVNLSNLKEIILVNTSDIKRV-----EIKTS-NVNAL  234 (414)
Q Consensus       165 ~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~--l--~i~~l~~L~~L~l~~~~~l~~~-----~~~~p-~L~~L  234 (414)
                      +|++++|.+++..... ++.+++|++|++++|..+..  +  .+..+++|+.|++++|..+...     ...+| +|++|
T Consensus       122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            7777777665544443 45577777777777743321  1  1233566666666666333221     11344 55555


Q ss_pred             Eeeeecc----cceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEecccc
Q 015001          235 AIHQTYL----FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       235 ~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      +++++..    ..++..+..+++|++|+++++. +++..+. .+..+++|+.|++++|
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTC
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCC
Confidence            5555420    1112223344555555555444 3332222 2344455555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=2.2e-23  Score=210.85  Aligned_cols=37  Identities=27%  Similarity=0.545  Sum_probs=29.3

Q ss_pred             CccCCCCCHHHHHHHhccCC-hHHHHHhhhcccCchhh
Q 015001            9 VDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQV   45 (414)
Q Consensus         9 ~D~i~~LPdeiL~~Ils~L~-~~d~~~~~~VskrW~~l   45 (414)
                      .|+++.||||++.+||+||+ .+|++++++|||||+++
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            58999999999999999999 99999999999999987

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=6.9e-17  Score=150.85  Aligned_cols=203  Identities=20%  Similarity=0.231  Sum_probs=135.8

Q ss_pred             HHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCC-CCccccCcccceeEeeEEEcChHHHHHHHhC
Q 015001          106 RCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISG  184 (414)
Q Consensus       106 ~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~  184 (414)
                      ..+..+...++++|++....  ...+|..++.+++|++|++++|.+.. +..+..+++|++|+|++|.+.  .+...+..
T Consensus        73 ~~l~~~~~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~  148 (328)
T 4fcg_A           73 DLLEDATQPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS  148 (328)
T ss_dssp             HHHHHHTSTTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred             HHHhcccccceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence            33444455799999998743  33788888899999999999998763 355788999999999999885  23334778


Q ss_pred             CCcccEEEeeccCCcceee-----------cCCCCCCceEEEeecCCCceEe---eeccceeeeEeeeecccceeeeccc
Q 015001          185 CPLIEYLEIRSCEGLESLD-----------LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSS  250 (414)
Q Consensus       185 ~p~Le~L~l~~c~~~~~l~-----------i~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~  250 (414)
                      +++|++|++++|.....+.           +..+++|+.|++++| .+..++   ..+++|++|+++++....++..+..
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred             CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence            9999999999987654331           122677777777777 333332   2456777777776664334445666


Q ss_pred             cccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccccc---cccccceEEeeccCCceEe
Q 015001          251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV  314 (414)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~  314 (414)
                      +++|+.|++++|.+... ++..+..+++|+.|++++|.....++.   .+++|++|++++|...+.+
T Consensus       228 l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             CTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             CCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            67777777766654432 222345567777777777655544442   5566677777776665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.60  E-value=2.3e-15  Score=140.53  Aligned_cols=206  Identities=20%  Similarity=0.247  Sum_probs=161.2

Q ss_pred             CCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001          138 VESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (414)
Q Consensus       138 ~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~  214 (414)
                      ..++++|+++++.+... .....+++|++|+|+++.+.  .+...+..+++|++|++++|... .+  .+..+++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            47899999999987533 55777999999999999885  23334678999999999998654 33  356689999999


Q ss_pred             EeecCCCceEee------------eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEE
Q 015001          215 LVNTSDIKRVEI------------KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL  282 (414)
Q Consensus       215 l~~~~~l~~~~~------------~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  282 (414)
                      +++|.....++.            .+++|++|+++++....++..++.+++|++|+++++.+..  ++..+..+++|+.|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence            999844333322            3899999999998855666678899999999999998874  33447789999999


Q ss_pred             ecccccccccccc---cccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001          283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS  348 (414)
Q Consensus       283 ~l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~  348 (414)
                      ++++|.....++.   .+++|+.|++++|...+.++   ...++|+.|.+.++..     ..+.++++|+.+.+..+
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            9999866666553   67899999999998877664   3457788888888654     56777888888887644

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.58  E-value=6.7e-15  Score=138.39  Aligned_cols=224  Identities=17%  Similarity=0.139  Sum_probs=98.6

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|++..+.  ...++. +..+++|++|++++|.+...+.+..+++|++|+++++.+.....   +..+++|++|++
T Consensus        66 ~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l  139 (347)
T 4fmz_A           66 TNLEYLNLNGNQ--ITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNL  139 (347)
T ss_dssp             TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEEC
T ss_pred             CCccEEEccCCc--cccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEEC
Confidence            355555554421  122333 44555566666665555444445555566666665555422111   445555566655


Q ss_pred             eccCCccee-ecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001          194 RSCEGLESL-DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (414)
Q Consensus       194 ~~c~~~~~l-~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (414)
                      ++|.....+ .+..+++|+.|++++| .+..+.  ..+++|++|+++++....+.. +..+++|+.|++.++.+.+... 
T Consensus       140 ~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-  216 (347)
T 4fmz_A          140 GANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-  216 (347)
T ss_dssp             TTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCcccccchhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-
Confidence            555433222 2334455555555555 111111  134555555555544211111 4444555555555444433111 


Q ss_pred             hhhccCCCCcEEecccccccccc-cccccccceEEeeccCCce-EeeccCCCeeeEEEeCcee---EEeccCCccceEEE
Q 015001          271 NGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETSL  345 (414)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~~~~~l-~~~~~~L~~L~l~~c~~l~-~~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l  345 (414)
                        +..+++|+.|++++|...... ...+++|+.|++++|.... +.....++|+.+.+.++..   ..+..+++|+.|++
T Consensus       217 --~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          217 --VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL  294 (347)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             --hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence              344455555555554211110 2244455555555442211 0012234455555544433   22344455555555


Q ss_pred             Eee
Q 015001          346 CFS  348 (414)
Q Consensus       346 ~~~  348 (414)
                      +.+
T Consensus       295 ~~n  297 (347)
T 4fmz_A          295 NNN  297 (347)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.55  E-value=3.3e-15  Score=155.32  Aligned_cols=229  Identities=19%  Similarity=0.129  Sum_probs=112.4

Q ss_pred             CCeEEEEEecCCccccCCc--cccCCCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHH--HHHhCCCc
Q 015001          115 EVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIA--SLISGCPL  187 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~--~ll~~~p~  187 (414)
                      ++++|+++.+.. ...+|.  .+..+++|++|++++|.+...   .....+++|++|+|+++.++.....  ..+.++++
T Consensus       101 ~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~  179 (768)
T 3rgz_A          101 SLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE  179 (768)
T ss_dssp             TCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred             CCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence            555555544211 112333  455555566666655544322   1124555666666655555222111  12455666


Q ss_pred             ccEEEeeccCCcceeecCCCCCCceEEEeecCC---CceEeeeccceeeeEeeeec-ccceeeeccccccCceeEeeccC
Q 015001          188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD---IKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       188 Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~  263 (414)
                      |++|++++|..........+++|+.|++++|.-   +.. ...+++|++|+++++. ....+..+..+++|++|+++++.
T Consensus       180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  258 (768)
T 3rgz_A          180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ  258 (768)
T ss_dssp             CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred             CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence            666666655433333334456666666665511   111 1245566666666554 11223345556666666666555


Q ss_pred             CchHHHHhhhccCCCCcEEecccccccccccc----cccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----  331 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~----~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----  331 (414)
                      +.+.. +.  ..+++|++|+++++.....++.    .+++|++|++++|...+.++   ...++|++|.+.++..     
T Consensus       259 l~~~~-~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip  335 (768)
T 3rgz_A          259 FVGPI-PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP  335 (768)
T ss_dssp             CEESC-CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccCcc-Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence            44311 11  1455666666666533322222    23666777766664432222   2345666666666544     


Q ss_pred             -EEeccCCccceEEEEee
Q 015001          332 -SFSSNALSLSETSLCFS  348 (414)
Q Consensus       332 -~~~~~~~~L~~L~l~~~  348 (414)
                       ..+.++++|+.|+++.+
T Consensus       336 ~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          336 MDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             HHHHTTCTTCCEEECCSS
T ss_pred             HHHHhcCCCCCEEeCcCC
Confidence             12556677777777665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.54  E-value=2.2e-14  Score=134.87  Aligned_cols=227  Identities=14%  Similarity=0.144  Sum_probs=172.3

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      .++++++++..+.  ...+|. +..+++|++|++++|.+...+....+++|++|++++|.++.-  . .+..+++|++|+
T Consensus        43 l~~L~~L~l~~~~--i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           43 LESITKLVVAGEK--VASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELY  116 (347)
T ss_dssp             HTTCSEEECCSSC--CCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEE
T ss_pred             cccccEEEEeCCc--cccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEE
Confidence            4689999997643  234443 677899999999999887665588999999999999988432  2 378999999999


Q ss_pred             eeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (414)
Q Consensus       193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (414)
                      +++|.....-.+..+++|+.|++++|..+..+.  ..+++|++|+++++...... .+..+++|++|+++++.+...  .
T Consensus       117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~  193 (347)
T 4fmz_A          117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDI--S  193 (347)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECTTSCCCCC--G
T ss_pred             CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch-hhccCCCCCEEEccCCccccc--c
Confidence            999865433346778999999999995444333  26789999999988733222 278899999999999887652  2


Q ss_pred             hhhccCCCCcEEecccccccccc-cccccccceEEeeccCCceEe-eccCCCeeeEEEeCcee---EEeccCCccceEEE
Q 015001          271 NGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLIQV-EIETPNLSIFKYHGDLI---SFSSNALSLSETSL  345 (414)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~~~~~l-~~~~~~L~~L~l~~c~~l~~~-~~~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l  345 (414)
                      . +..+++|+.|+++++...... ...+++|++|++++|.....- ....++|+.+.+.++..   ..+..+++|+.|++
T Consensus       194 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          194 P-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV  272 (347)
T ss_dssp             G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             c-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence            2 678999999999996332222 347889999999998643211 34568899999988866   44677899999999


Q ss_pred             Eeec
Q 015001          346 CFSS  349 (414)
Q Consensus       346 ~~~~  349 (414)
                      +.+.
T Consensus       273 ~~n~  276 (347)
T 4fmz_A          273 GSNQ  276 (347)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            8873

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.52  E-value=7.1e-15  Score=136.27  Aligned_cols=230  Identities=15%  Similarity=0.076  Sum_probs=131.4

Q ss_pred             CCeEEEEEecCCc-cccCCccccCCCcccEEEecC-cccC--CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          115 EVKELVLVHWRSE-RRNLPEIIFYVESLHVLELSY-CKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       115 ~l~~L~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~-~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +|++|++....-. ...+|..+..+++|++|++++ +.+.  .+..+..+++|++|+|+++.++.. +...+..+++|++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~  129 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCE
Confidence            5666776653221 125667777777777777774 4443  234566777777777777766311 1123566777777


Q ss_pred             EEeeccCCccee--ecCCCCCCceEEEeecCCCc-eEee---ecc-ceeeeEeeeecc-cceeeeccccccCceeEeecc
Q 015001          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIK-RVEI---KTS-NVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFL  262 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~-~~~~---~~p-~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~  262 (414)
                      |++++|.....+  .+..+++|+.|++++| .+. .++.   ..+ +|++|+++++.. ...+..+..++ |+.|+++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            777776443221  3445677777777777 332 2221   334 677777777652 12333445554 777777777


Q ss_pred             CCchHHHHhhhccCCCCcEEeccccccccccc--ccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee----EE
Q 015001          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----SF  333 (414)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~--~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~----~~  333 (414)
                      .+... ....+..+++|+.|+++++......+  ..+++|++|++++|...+.++   ...++|+.+.+.++..    ..
T Consensus       208 ~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            66542 23345667777777777753322222  255677777777765543332   2335566666665544    11


Q ss_pred             eccCCccceEEEEee
Q 015001          334 SSNALSLSETSLCFS  348 (414)
Q Consensus       334 ~~~~~~L~~L~l~~~  348 (414)
                      ..++++|+.+++..+
T Consensus       287 ~~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          287 GGNLQRFDVSAYANN  301 (313)
T ss_dssp             STTGGGSCGGGTCSS
T ss_pred             CccccccChHHhcCC
Confidence            244556666665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.49  E-value=3e-14  Score=144.21  Aligned_cols=216  Identities=17%  Similarity=0.120  Sum_probs=87.2

Q ss_pred             cCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee----e
Q 015001          130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL----D  203 (414)
Q Consensus       130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l----~  203 (414)
                      .+|..+..+++|++|++++|.+...  .....+++|++|+++++.+........+..+++|++|++++|......    .
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  371 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ  371 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred             CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence            3444444444444444444433221  223344444444444443311111111334444444444444332111    1


Q ss_pred             cCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccc--eeeeccccccCceeEeeccCCchHHHHhhhccCC
Q 015001          204 LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP  277 (414)
Q Consensus       204 i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  277 (414)
                      +..+++|+.|++++| .+..+.    ..+++|++|+++++....  ....+..+++|+.|+++++.+... ....+..++
T Consensus       372 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~  449 (606)
T 3t6q_A          372 LRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLP  449 (606)
T ss_dssp             TTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCT
T ss_pred             cccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc-CHHHHhCCC
Confidence            333445555555544 222221    123455555555443111  011244455555555555544331 122234455


Q ss_pred             CCcEEecccccccc------cccccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----EEeccCCccceE
Q 015001          278 LLEYLSMTKCHKLT------SVRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSET  343 (414)
Q Consensus       278 ~L~~L~l~~c~~~~------~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L  343 (414)
                      +|+.|+++++....      .....+++|+.|++++|......+   ...++|+.+.+.++..     ..+.++++| .|
T Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L  528 (606)
T 3t6q_A          450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL  528 (606)
T ss_dssp             TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred             CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence            55555555543221      111244555555555553322211   2234555555555443     233444444 44


Q ss_pred             EEEee
Q 015001          344 SLCFS  348 (414)
Q Consensus       344 ~l~~~  348 (414)
                      +++.+
T Consensus       529 ~L~~N  533 (606)
T 3t6q_A          529 NLASN  533 (606)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            44444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=1.5e-13  Score=134.55  Aligned_cols=204  Identities=18%  Similarity=0.132  Sum_probs=90.1

Q ss_pred             CCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEe
Q 015001          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV  216 (414)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~  216 (414)
                      .+++|++|++++|.+........+++|++|+++++.+.....   +..+++|++|++++|.....-.+..+++|+.|+++
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA  251 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             cCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence            344444444444444333334444455555555444421111   33445555555554432211123334555555555


Q ss_pred             ecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc-
Q 015001          217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV-  293 (414)
Q Consensus       217 ~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l-  293 (414)
                      +| .+..+.  ..+++|++|+++++....... +..+++|+.|+++++.+.+.  .. +..+++|+.|++++|...... 
T Consensus       252 ~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~  326 (466)
T 1o6v_A          252 NN-QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI--SP-ISNLKNLTYLTLYFNNISDISP  326 (466)
T ss_dssp             SS-CCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC--GG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred             CC-ccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCc--hh-hcCCCCCCEEECcCCcCCCchh
Confidence            55 111111  134555555555544221111 44555555555555554431  11 345556666666554222111 


Q ss_pred             cccccccceEEeeccCCceE-eeccCCCeeeEEEeCcee---EEeccCCccceEEEEee
Q 015001          294 RISSPCLKTLILECCDKLIQ-VEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS  348 (414)
Q Consensus       294 ~~~~~~L~~L~l~~c~~l~~-~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l~~~  348 (414)
                      ...+++|+.|++++|..... -....++|+.+.+.++..   ..+.++++|+.|+++.+
T Consensus       327 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          327 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  385 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred             hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence            12455666666655532211 012334555555555544   22455566666666544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.48  E-value=6.3e-14  Score=134.00  Aligned_cols=229  Identities=15%  Similarity=0.159  Sum_probs=104.0

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +++++|++....  ...++. .+..+++|++|++++|.+...  ..+..+++|++|+++++.++. ....++..+++|++
T Consensus        69 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           69 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred             ccCcEEECCCCc--ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcE
Confidence            566666665422  222332 344556666666666655332  234556666666666665531 11112345566666


Q ss_pred             EEeeccCCccee--ecCCCCCCceEEEeecCCCceEee-ec-------------------cceeeeEeeeecccce----
Q 015001          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI-KT-------------------SNVNALAIHQTYLFPI----  244 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~-~~-------------------p~L~~L~l~~~~~~~~----  244 (414)
                      |++++|......  .+..+++|+.|++++| .+..+.. ..                   ++|++|+++++....+    
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~  224 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV  224 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence            666655332111  1333455555555554 1111111 11                   2333333333321111    


Q ss_pred             ----------------eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEe
Q 015001          245 ----------------EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLIL  305 (414)
Q Consensus       245 ----------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l  305 (414)
                                      ...+..+++|++|+++++.+... ....+..+++|+.|+++++. +..++   ..+++|+.|++
T Consensus       225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEEC
T ss_pred             cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEEC
Confidence                            01233445555555555544331 11223445555555555531 11111   23455566665


Q ss_pred             eccCCceEee---ccCCCeeeEEEeCcee--EEeccCCccceEEEEeec
Q 015001          306 ECCDKLIQVE---IETPNLSIFKYHGDLI--SFSSNALSLSETSLCFSS  349 (414)
Q Consensus       306 ~~c~~l~~~~---~~~p~L~~l~~~~~~~--~~~~~~~~L~~L~l~~~~  349 (414)
                      ++|.. .+++   ...++|+.|.+.++..  ..+...++|++|+++.++
T Consensus       303 ~~n~l-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          303 SHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CSSCC-CCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred             CCCcc-eecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence            55532 1221   1234566666665554  345556677777776664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.48  E-value=3.1e-13  Score=132.35  Aligned_cols=226  Identities=16%  Similarity=0.126  Sum_probs=117.9

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      .+++++|++..+.  ...++. +..+++|++|++++|.+...+....+++|++|++++|.+..-.   .+..+++|++|.
T Consensus        89 l~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~  162 (466)
T 1o6v_A           89 LTKLVDILMNNNQ--IADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLS  162 (466)
T ss_dssp             CTTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEE
T ss_pred             cccCCEEECCCCc--cccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh---hhccCCcccEee
Confidence            3588888886532  233444 6778888888888887765555778888899998888874321   155667777776


Q ss_pred             eeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHH--
Q 015001          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW--  268 (414)
Q Consensus       193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--  268 (414)
                      +.++.. ....+..+++|+.|++++| .+..+.  ..+++|++|+++++...... .++.+++|++|+++++.+....  
T Consensus       163 l~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l  239 (466)
T 1o6v_A          163 FGNQVT-DLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTL  239 (466)
T ss_dssp             EEESCC-CCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGG
T ss_pred             cCCccc-CchhhccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCcccccc-cccccCCCCEEECCCCCcccchhh
Confidence            653211 1112444566666666655 122211  13455555555554411111 1334445555555444433210  


Q ss_pred             ------------------HHhhhccCCCCcEEecccccccccc-cccccccceEEeeccCCceEe-eccCCCeeeEEEeC
Q 015001          269 ------------------LCNGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLIQV-EIETPNLSIFKYHG  328 (414)
Q Consensus       269 ------------------~~~~~~~~~~L~~L~l~~c~~~~~l-~~~~~~L~~L~l~~c~~l~~~-~~~~p~L~~l~~~~  328 (414)
                                        ... +..+++|+.|+++++...... ...+++|+.|++++|...... ....++|+.+.+.+
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF  318 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred             hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcC
Confidence                              011 334445555555543211100 124455555555554322111 12345566666666


Q ss_pred             cee---EEeccCCccceEEEEee
Q 015001          329 DLI---SFSSNALSLSETSLCFS  348 (414)
Q Consensus       329 ~~~---~~~~~~~~L~~L~l~~~  348 (414)
                      +..   ..+..+++|++|+++.+
T Consensus       319 n~l~~~~~~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          319 NNISDISPVSSLTKLQRLFFYNN  341 (466)
T ss_dssp             SCCSCCGGGGGCTTCCEEECCSS
T ss_pred             CcCCCchhhccCccCCEeECCCC
Confidence            544   22456667777777655

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.48  E-value=5.3e-14  Score=146.24  Aligned_cols=174  Identities=16%  Similarity=0.126  Sum_probs=114.6

Q ss_pred             cCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001          136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (414)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~  214 (414)
                      ..+++|++|++++|.+... +....+++|++|++++|.++... ...+..+++|++|++++|.....+....+++|+.|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            5677888888888876532 44778888888888888875333 334678899999999888655433333578888888


Q ss_pred             EeecC---CCceEee-eccceeeeEeeeec-ccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccc
Q 015001          215 LVNTS---DIKRVEI-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK  289 (414)
Q Consensus       215 l~~~~---~l~~~~~-~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  289 (414)
                      +++|.   .+..... .+++|++|+++++. ....+..++++++|++|+++++.+.+......+..+++|+.|+++++..
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            88871   1111111 24888888888876 2234556778888888888888765432233356788888888888643


Q ss_pred             cccccc---ccc-ccceEEeeccCC
Q 015001          290 LTSVRI---SSP-CLKTLILECCDK  310 (414)
Q Consensus       290 ~~~l~~---~~~-~L~~L~l~~c~~  310 (414)
                      ...++.   .++ +|+.|++++|..
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N~l  380 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSNNF  380 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSSEE
T ss_pred             CccccHHHHhhhcCCcEEEccCCCc
Confidence            323322   222 566666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.47  E-value=6.5e-14  Score=141.74  Aligned_cols=148  Identities=16%  Similarity=0.207  Sum_probs=78.9

Q ss_pred             ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~  214 (414)
                      +..+++|++|+++++.+...+....+++|++|++.+|.++  .+..+  .+++|++|++.+|.......+..+++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            4445677777777766644445566667777777777662  12222  6677777777776555444555566666666


Q ss_pred             EeecCCCceEe------eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          215 LVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       215 l~~~~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      +++| .+..+.      ..+++|++|+++++....++..+..+++|+.|+++++.+........+..+++|+.|++++|
T Consensus       357 ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          357 LSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             CcCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            6666 332221      13456666666655422233344455555555555554433211122334444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.47  E-value=7.7e-14  Score=136.09  Aligned_cols=119  Identities=16%  Similarity=0.094  Sum_probs=68.5

Q ss_pred             ceeeeEeeeecccc-eeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEe
Q 015001          230 NVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLIL  305 (414)
Q Consensus       230 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l  305 (414)
                      +|++|+++++.... .+..++.+++|++|+++++.+.... ...+..+++|+.|+++++.....   ....+++|+.|++
T Consensus       276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             CceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            44444444443111 1223556677777777777665421 22345667777777777532221   1235677788888


Q ss_pred             eccCCceEee---ccCCCeeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001          306 ECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (414)
Q Consensus       306 ~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~  349 (414)
                      ++|......+   ...++|+.|.+.++..     ..+.++++|+.|+++.++
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            7775433222   2446777777777655     234667788888887773

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=6.4e-14  Score=141.49  Aligned_cols=102  Identities=20%  Similarity=0.159  Sum_probs=63.5

Q ss_pred             eccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccc--cccccccccccceEEeeccCCceEee---ccCCCe
Q 015001          247 NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK--LTSVRISSPCLKTLILECCDKLIQVE---IETPNL  321 (414)
Q Consensus       247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~--~~~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L  321 (414)
                      .+..+++|+.|+++++.+.+. .+..+..+++|+.|+++++..  +......+++|+.|++++|... .++   ...++|
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             hhccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence            355667777777776666542 122355667777777777522  1112224677788887776543 222   234677


Q ss_pred             eeEEEeCcee--EEeccCCccceEEEEeecc
Q 015001          322 SIFKYHGDLI--SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       322 ~~l~~~~~~~--~~~~~~~~L~~L~l~~~~~  350 (414)
                      +.|.+.++..  ..+..+++|+.|+++.++.
T Consensus       327 ~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          327 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             SEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             CEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence            7888777766  5567778999999988753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.46  E-value=2.3e-13  Score=132.69  Aligned_cols=218  Identities=14%  Similarity=0.101  Sum_probs=122.0

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|++..+.-.  .+|  +..+++|++|++++|.+... ....+++|++|+++++.++.-  .  +..+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence            45555555543211  122  44455666666666555432 245556666666666655321  1  455666666666


Q ss_pred             eccCCcceeecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhh
Q 015001          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (414)
Q Consensus       194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  272 (414)
                      ++|... .+.+..+++|+.|+++.|..+..+.+ .+++|++|+++++....++  ++.+++|+.|+++++.+...    -
T Consensus       135 ~~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~  207 (457)
T 3bz5_A          135 ARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----D  207 (457)
T ss_dssp             TTSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----C
T ss_pred             CCCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----c
Confidence            665432 23455566666666666643433333 4567777777766633322  66777777777777776653    1


Q ss_pred             hccCCCCcEEeccccccccccc-ccccccceEEeeccCCceEeeccCCCeeeEEE----------eCcee---EEeccCC
Q 015001          273 ISKLPLLEYLSMTKCHKLTSVR-ISSPCLKTLILECCDKLIQVEIETPNLSIFKY----------HGDLI---SFSSNAL  338 (414)
Q Consensus       273 ~~~~~~L~~L~l~~c~~~~~l~-~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~----------~~~~~---~~~~~~~  338 (414)
                      +..+++|+.|+++++... .++ ..+++|+.|++++|.....-.-.+++|+.+.+          .++..   ....+++
T Consensus       208 l~~l~~L~~L~Ls~N~l~-~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~  286 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR  286 (457)
T ss_dssp             CTTCTTCSEEECCSSCCS-CCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred             cccCCCCCEEECcCCccc-ccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence            566778888888775322 233 36678888888776543211223344444433          33321   4456678


Q ss_pred             ccceEEEEee
Q 015001          339 SLSETSLCFS  348 (414)
Q Consensus       339 ~L~~L~l~~~  348 (414)
                      +|+.|+++.+
T Consensus       287 ~L~~L~Ls~n  296 (457)
T 3bz5_A          287 KIKELDVTHN  296 (457)
T ss_dssp             TCCCCCCTTC
T ss_pred             cCCEEECCCC
Confidence            8888888766

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.46  E-value=1e-13  Score=140.36  Aligned_cols=232  Identities=20%  Similarity=0.172  Sum_probs=169.2

Q ss_pred             CCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          115 EVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      +++++++..  .....++.. +..+++|++|++++|.+... .....+++|++|+++++.+..... ..+..+++|++|+
T Consensus       255 ~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQK--HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTT--CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEE
T ss_pred             ceeEEEeec--CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEE
Confidence            344444433  233345543 66689999999999987533 567889999999999998753322 3367899999999


Q ss_pred             eeccCCccee---ecCCCCCCceEEEeecCCCceEe------eeccceeeeEeeeecccce-eeeccccccCceeEeecc
Q 015001          193 IRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL  262 (414)
Q Consensus       193 l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~------~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~  262 (414)
                      +++|.....+   .+..+++|+.|++++| .+..+.      ..+++|++|+++++..... +..+..+++|++|+++++
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            9998655333   3556899999999998 444443      2578999999998872222 345778999999999998


Q ss_pred             CCchHHHHhhhccCCCCcEEecccccccccc---cccccccceEEeeccCCceE-e-----eccCCCeeeEEEeCcee--
Q 015001          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQ-V-----EIETPNLSIFKYHGDLI--  331 (414)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~l~~-~-----~~~~p~L~~l~~~~~~~--  331 (414)
                      .+........+..+++|+.|+++++......   ...+++|+.|++++|...+. +     ....++|+.|.+.++..  
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            8765444444678999999999997443322   33689999999999875431 1     23557899999998876  


Q ss_pred             ---EEeccCCccceEEEEeecc
Q 015001          332 ---SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       332 ---~~~~~~~~L~~L~l~~~~~  350 (414)
                         ..+.++++|++|+++.+..
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCC
T ss_pred             cChhhhccccCCCEEECCCCcc
Confidence               3467789999999998843

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.45  E-value=3.1e-13  Score=136.03  Aligned_cols=225  Identities=16%  Similarity=0.049  Sum_probs=128.4

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|++..+.  ...+|.   .+++|++|++++|.+...+.  .+++|++|++++|.++.  +   -..+++|+.|++
T Consensus        61 ~~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l---~~~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--L---PALPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCC--CSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--C---CCCCTTCCEEEC
T ss_pred             CCCcEEEecCCC--CCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--C---CCCCCCcCEEEC
Confidence            477777776532  224554   35777777777776653222  66777777777776532  1   114567777777


Q ss_pred             eccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchH------
Q 015001          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE------  267 (414)
Q Consensus       194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------  267 (414)
                      ++|... .+.. .+++|+.|++++| .+..++...++|+.|+++++....++   ..+++|+.|++++|.+..-      
T Consensus       129 ~~N~l~-~lp~-~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~  202 (622)
T 3g06_A          129 FGNQLT-SLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE  202 (622)
T ss_dssp             CSSCCS-CCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             CCCCCC-cCCC-CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence            766432 1211 1366777777766 33333323344444444444322111   2234444444444433320      


Q ss_pred             ---------HHHhhhccCCCCcEEecccccccccccccccccceEEeeccCCceEeeccCCCeeeEEEeCcee----EEe
Q 015001          268 ---------WLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFS  334 (414)
Q Consensus       268 ---------~~~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~----~~~  334 (414)
                               .+..+...+++|+.|+++++ .+..++..+++|+.|++++|. +..++...++|+.|.+.++..    ..+
T Consensus       203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~lp~~l  280 (622)
T 3g06_A          203 LYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESL  280 (622)
T ss_dssp             CCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCSCCGGG
T ss_pred             hhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCcCCHHH
Confidence                     00011223467777777775 344455667888888888873 445555667899998888866    446


Q ss_pred             ccCCccceEEEEeecchhhhHHHH
Q 015001          335 SNALSLSETSLCFSSHLMVNIEWV  358 (414)
Q Consensus       335 ~~~~~L~~L~l~~~~~~~~~~~~~  358 (414)
                      .++++|+.|+++.|+........+
T Consensus       281 ~~l~~L~~L~L~~N~l~~~~~~~l  304 (622)
T 3g06_A          281 IHLSSETTVNLEGNPLSERTLQAL  304 (622)
T ss_dssp             GGSCTTCEEECCSCCCCHHHHHHH
T ss_pred             hhccccCEEEecCCCCCCcCHHHH
Confidence            788999999999885443333333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.45  E-value=1.9e-13  Score=133.23  Aligned_cols=240  Identities=13%  Similarity=0.080  Sum_probs=175.3

Q ss_pred             CCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcc
Q 015001           83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFS  162 (414)
Q Consensus        83 ~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~  162 (414)
                      ..++.+.+.......      +    .....+++++|++..+.-.  .++  +..+++|++|++++|.+... ....+++
T Consensus        64 ~~L~~L~Ls~n~l~~------~----~~~~l~~L~~L~Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~  128 (457)
T 3bz5_A           64 TGLTKLICTSNNITT------L----DLSQNTNLTYLACDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKL-DVSQNPL  128 (457)
T ss_dssp             TTCSEEECCSSCCSC------C----CCTTCTTCSEEECCSSCCS--CCC--CTTCTTCCEEECCSSCCSCC-CCTTCTT
T ss_pred             CCCCEEEccCCcCCe------E----ccccCCCCCEEECcCCCCc--eee--cCCCCcCCEEECCCCcCCee-cCCCCCc
Confidence            467777766443211      1    1223468999999874322  333  67789999999999988654 3788999


Q ss_pred             cceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeecc
Q 015001          163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYL  241 (414)
Q Consensus       163 L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~  241 (414)
                      |++|+++++.++.-  .  +..+++|++|++++|.....+.+..+++|+.|++++| .+..+++ .+++|+.|+++++..
T Consensus       129 L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~l  203 (457)
T 3bz5_A          129 LTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNNI  203 (457)
T ss_dssp             CCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcccee--c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCcC
Confidence            99999999988442  1  6789999999999997777777888899999999999 4444444 578999999999874


Q ss_pred             cceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccccccc----------ccceEEeeccCCc
Q 015001          242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSP----------CLKTLILECCDKL  311 (414)
Q Consensus       242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~~~~----------~L~~L~l~~c~~l  311 (414)
                      ..+  .++.+++|+.|+++++.+.+  ++  +..+++|+.|+++++.....-...++          +|+.|++++|...
T Consensus       204 ~~~--~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~  277 (457)
T 3bz5_A          204 TKL--DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL  277 (457)
T ss_dssp             SCC--CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred             Cee--ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccC
Confidence            433  58889999999999999877  22  67899999999998632221122344          4556666667666


Q ss_pred             eEeec-cCCCeeeEEEeCcee-------------EEeccCCccceEEEEee
Q 015001          312 IQVEI-ETPNLSIFKYHGDLI-------------SFSSNALSLSETSLCFS  348 (414)
Q Consensus       312 ~~~~~-~~p~L~~l~~~~~~~-------------~~~~~~~~L~~L~l~~~  348 (414)
                      ++++. .+++|+.+.+.++..             ..+.+.++|+.|+++.+
T Consensus       278 ~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N  328 (457)
T 3bz5_A          278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT  328 (457)
T ss_dssp             CEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred             CcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence            66654 347899988887753             23455678888888766

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=136.04  Aligned_cols=230  Identities=18%  Similarity=0.092  Sum_probs=140.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      +++++|++..+.. ....|..+..+++|++|++++|.+...  ..+..+++|++|+|+++.+.... ...+..+++|++|
T Consensus        56 ~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L  133 (477)
T 2id5_A           56 PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSL  133 (477)
T ss_dssp             TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEE
Confidence            4677777754311 112244566677777777777766433  23566777777777777653211 1224567777777


Q ss_pred             EeeccCCcce--eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccce-eeeccccccCceeEeeccCC
Q 015001          192 EIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI  264 (414)
Q Consensus       192 ~l~~c~~~~~--l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  264 (414)
                      ++.+|.....  -.+..+++|+.|++++| .+..+.    ..+++|+.|+++++....+ ...+..+++|+.|+++++..
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            7777644321  13455677888888777 333332    1467778887777652221 22466777888888876654


Q ss_pred             chHHHHhhhccCCCCcEEeccccccccccc----ccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----E
Q 015001          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----S  332 (414)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~----~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~  332 (414)
                      ....... .....+|+.|+++++. +..++    ..+++|+.|++++|......   ....++|+.|.+.++..     .
T Consensus       213 ~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          213 LDTMTPN-CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             CCEECTT-TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred             ccccCcc-cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence            3321111 2233478888888763 22333    36788999999887643211   23457788888888765     3


Q ss_pred             EeccCCccceEEEEee
Q 015001          333 FSSNALSLSETSLCFS  348 (414)
Q Consensus       333 ~~~~~~~L~~L~l~~~  348 (414)
                      .+.++++|+.|+++.+
T Consensus       291 ~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          291 AFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             TBTTCTTCCEEECCSS
T ss_pred             HhcCcccCCEEECCCC
Confidence            5677899999999877

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.45  E-value=3.2e-13  Score=132.58  Aligned_cols=231  Identities=16%  Similarity=0.094  Sum_probs=160.7

Q ss_pred             CCCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCC--CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +++++|++...  ....+|.. +..+++|++|++++|.+..  +..+..+++|+.|+++++.+..... ..+..+++|++
T Consensus        80 ~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~  156 (477)
T 2id5_A           80 FNLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQ  156 (477)
T ss_dssp             TTCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCE
T ss_pred             ccCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCE
Confidence            58899988763  23456654 4568999999999987643  2557788999999999886632211 22567899999


Q ss_pred             EEeeccCCccee--ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeec-ccceeeeccccccCceeEeeccC
Q 015001          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~  263 (414)
                      |++.+|......  .+..+++|+.|++.++ .+..+.    ..+++|++|+++++. ...++.......+|++|+++++.
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence            999988543211  3566789999999988 444433    256889999998865 22233333445589999999888


Q ss_pred             CchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----E
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----S  332 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~  332 (414)
                      +.... ...+..+++|+.|+++++.....   ....+++|+.|++++|......   ....++|+.|.+.++..     .
T Consensus       236 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          236 LTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             CCSCC-HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred             ccccC-HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence            76422 23467789999999998632211   1236788999999887654322   23457888888888765     4


Q ss_pred             EeccCCccceEEEEeec
Q 015001          333 FSSNALSLSETSLCFSS  349 (414)
Q Consensus       333 ~~~~~~~L~~L~l~~~~  349 (414)
                      .+.++++|+.|+++.++
T Consensus       315 ~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          315 VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             GBSCGGGCCEEECCSSC
T ss_pred             HcCCCcccCEEEccCCC
Confidence            56778999999998884

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.45  E-value=6.1e-14  Score=141.93  Aligned_cols=227  Identities=17%  Similarity=0.094  Sum_probs=104.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      ++++++++.....  ..+| .+..+++|++|++++|.+...+.. .+++|+.|+++++......   -+..+++|++|++
T Consensus       285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l  357 (606)
T 3vq2_A          285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDL  357 (606)
T ss_dssp             TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEEC
T ss_pred             CCCCEEEecCccc--hhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEEEC
Confidence            5777777766332  2344 455566777777777665333333 5666666666655321111   1334555555555


Q ss_pred             eccCCcce----eecCCCCCCceEEEeecCCCceEe----------------------------eeccceeeeEeeeecc
Q 015001          194 RSCEGLES----LDLVNLSNLKEIILVNTSDIKRVE----------------------------IKTSNVNALAIHQTYL  241 (414)
Q Consensus       194 ~~c~~~~~----l~i~~l~~L~~L~l~~~~~l~~~~----------------------------~~~p~L~~L~l~~~~~  241 (414)
                      ++|.....    ..+..+++|+.|++++| .+..+.                            ..+++|++|+++++..
T Consensus       358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  436 (606)
T 3vq2_A          358 SRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT  436 (606)
T ss_dssp             CSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence            55432211    11223444555555444 122211                            1334455555544431


Q ss_pred             -cceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc---cccccccceEEeeccCCceEee--
Q 015001          242 -FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQVE--  315 (414)
Q Consensus       242 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~l~~~~--  315 (414)
                       ...+..+.++++|++|+++++.+.+...+..+..+++|+.|++++|......   ...+++|+.|++++|......+  
T Consensus       437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  516 (606)
T 3vq2_A          437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH  516 (606)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred             CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence             1112224445555555555554443222333444555555555554222211   1244555556555554332221  


Q ss_pred             -ccCCCeeeEEEeCcee----EEeccCC-ccceEEEEee
Q 015001          316 -IETPNLSIFKYHGDLI----SFSSNAL-SLSETSLCFS  348 (414)
Q Consensus       316 -~~~p~L~~l~~~~~~~----~~~~~~~-~L~~L~l~~~  348 (414)
                       ...++|+.+++.++..    ..+...+ +|+.|+++.+
T Consensus       517 ~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             TTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSC
T ss_pred             ccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCC
Confidence             1234455555555544    1233443 4666666555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.44  E-value=4.9e-14  Score=130.62  Aligned_cols=214  Identities=11%  Similarity=0.080  Sum_probs=152.6

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccC--CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      .+++++|++..+......+|..+..+++|++|++++|.+.  .+..+..+++|++|+++++.+... +...+..+++|++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence            4699999998433334467888899999999999999874  345678899999999999987422 2223678999999


Q ss_pred             EEeeccCCccee--ecCCCC-CCceEEEeecCCCc-eEe--eeccceeeeEeeeec-ccceeeeccccccCceeEeeccC
Q 015001          191 LEIRSCEGLESL--DLVNLS-NLKEIILVNTSDIK-RVE--IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~-~L~~L~l~~~~~l~-~~~--~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~  263 (414)
                      |++++|.....+  .+..++ +|+.|++++| .+. .++  +...+|++|+++++. ....+..+..+++|+.|+++++.
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            999999764332  355566 9999999988 222 111  122239999999887 22334567889999999999988


Q ss_pred             CchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCCceEeec--cCCCeeeEEEeCce
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEI--ETPNLSIFKYHGDL  330 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~--~~p~L~~l~~~~~~  330 (414)
                      +... ... +..+++|+.|+++++.....++   ..+++|+.|++++|...+.++.  ..++|+.+.+.+++
T Consensus       233 l~~~-~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          233 LAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             eeee-cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            7642 222 5678999999999975443333   3678999999999876555543  23445555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.44  E-value=5e-13  Score=125.93  Aligned_cols=233  Identities=15%  Similarity=0.075  Sum_probs=165.3

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +++++|++....  ...+|. .+..+++|++|++++|.+...  ..+..+++|++|+++++.++.- ....+..+++|++
T Consensus        52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence            488999887633  334555 577789999999999977532  4578899999999999988432 2234678999999


Q ss_pred             EEeeccCCcce---eecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeecc
Q 015001          191 LEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL  262 (414)
Q Consensus       191 L~l~~c~~~~~---l~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~  262 (414)
                      |++++|....-   -.+..+++|+.|++++|..+..+..    .+++|++|+++++..... +..+..+++|++|+++++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            99999855421   1355689999999999855555532    578999999999873322 446788999999999999


Q ss_pred             CCchHHHHhhhccCCCCcEEeccccccccc----c--cccccccceEEeeccCCce----Ee---eccCCCeeeEEEeCc
Q 015001          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTS----V--RISSPCLKTLILECCDKLI----QV---EIETPNLSIFKYHGD  329 (414)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----l--~~~~~~L~~L~l~~c~~l~----~~---~~~~p~L~~l~~~~~  329 (414)
                      .+... .......+++|+.|+++++.....    +  ....+.++.+++..+....    .+   ....++|+.+++.++
T Consensus       209 ~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          209 QHILL-LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             CSTTH-HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             ccccc-hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence            87542 233455689999999999632221    1  1134567777776654321    11   234578888888887


Q ss_pred             ee-----EEeccCCccceEEEEeecc
Q 015001          330 LI-----SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       330 ~~-----~~~~~~~~L~~L~l~~~~~  350 (414)
                      ..     ..+.++++|++|+++.++.
T Consensus       288 ~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          288 QLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            66     2357789999999998843

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.44  E-value=9.6e-14  Score=128.12  Aligned_cols=219  Identities=19%  Similarity=0.163  Sum_probs=141.4

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHH-HHHHHhCCCcccEEEeeccCCcce-ee
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLES-LD  203 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~-l~~ll~~~p~Le~L~l~~c~~~~~-l~  203 (414)
                      ...+|..+.  ++|++|+++++.+...  ..+..+++|++|+|+++.++... ....+..+++|++|++++|....- -.
T Consensus        19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~   96 (306)
T 2z66_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN   96 (306)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred             cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence            345555432  6788888888877543  23567888888888887764221 111234688888888888754321 13


Q ss_pred             cCCCCCCceEEEeecCCCceE-----eeeccceeeeEeeeeccc-ceeeeccccccCceeEeeccCCchHHHHhhhccCC
Q 015001          204 LVNLSNLKEIILVNTSDIKRV-----EIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP  277 (414)
Q Consensus       204 i~~l~~L~~L~l~~~~~l~~~-----~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  277 (414)
                      +..+++|+.|+++++ .+..+     ...+++|++|+++++... .....+..+++|++|+++++.+.+...+..+..++
T Consensus        97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A           97 FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence            556788888888877 22211     225678888888877622 12234667788888888888776533445567788


Q ss_pred             CCcEEeccccccccc---ccccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----EEeccC-CccceEEE
Q 015001          278 LLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSL  345 (414)
Q Consensus       278 ~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~L~l  345 (414)
                      +|+.|+++++.....   ....+++|+.|++++|......   ....++|+.+.+.++..     ..+..+ ++|+.|++
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence            888888888633222   1235678888888887643211   12347788888887765     344555 48999999


Q ss_pred             Eeec
Q 015001          346 CFSS  349 (414)
Q Consensus       346 ~~~~  349 (414)
                      +.++
T Consensus       256 ~~N~  259 (306)
T 2z66_A          256 TQND  259 (306)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            8884

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.43  E-value=1.9e-13  Score=133.30  Aligned_cols=233  Identities=15%  Similarity=0.075  Sum_probs=137.5

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCC--CCccccCcccceeEeeEEEcChHHHH-HHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIA-SLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~~p~Le~  190 (414)
                      +++++|++..+.....--+..+..+++|++|++++|.+..  +..+..+++|++|++++|.++...+. ..+..+++|++
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  133 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM  133 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred             ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence            5788888876432212223456678889999998887642  35677888999999988887543332 23677889999


Q ss_pred             EEeeccCCccee--e-cCCCCCCceEEEeecCCCceEee--------------------------------------ecc
Q 015001          191 LEIRSCEGLESL--D-LVNLSNLKEIILVNTSDIKRVEI--------------------------------------KTS  229 (414)
Q Consensus       191 L~l~~c~~~~~l--~-i~~l~~L~~L~l~~~~~l~~~~~--------------------------------------~~p  229 (414)
                      |++++|......  . +..+++|+.|++++| .+..+..                                      ..+
T Consensus       134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  212 (455)
T 3v47_A          134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT  212 (455)
T ss_dssp             EECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred             EECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence            999888654321  1 556788999998887 2221110                                      113


Q ss_pred             ceeeeEeeeecccc-ee--------------eecc-------------------------ccccCceeEeeccCCchHHH
Q 015001          230 NVNALAIHQTYLFP-IE--------------VNVS-------------------------SCGNLKCLKFDFLPIEDEWL  269 (414)
Q Consensus       230 ~L~~L~l~~~~~~~-~~--------------~~~~-------------------------~~~~L~~L~l~~~~~~~~~~  269 (414)
                      +|++|+++++.... .+              ..+.                         ..++|+.|+++++.+... .
T Consensus       213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~  291 (455)
T 3v47_A          213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-L  291 (455)
T ss_dssp             EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-C
T ss_pred             eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc-c
Confidence            45555555443100 00              0000                         013555555555554431 2


Q ss_pred             HhhhccCCCCcEEecccccccccc---cccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----EEeccCC
Q 015001          270 CNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNAL  338 (414)
Q Consensus       270 ~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~  338 (414)
                      ...+..+++|+.|+++++......   ...+++|+.|++++|...+..   ....++|+.|.+.++..     ..+.+++
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            223456677777777775332221   225677888888777543221   12456788888877765     2456678


Q ss_pred             ccceEEEEee
Q 015001          339 SLSETSLCFS  348 (414)
Q Consensus       339 ~L~~L~l~~~  348 (414)
                      +|+.|+++.+
T Consensus       372 ~L~~L~L~~N  381 (455)
T 3v47_A          372 NLKELALDTN  381 (455)
T ss_dssp             TCCEEECCSS
T ss_pred             cccEEECCCC
Confidence            8888888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=5.2e-15  Score=138.48  Aligned_cols=194  Identities=19%  Similarity=0.245  Sum_probs=141.9

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEE-EcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREV-CADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~-~~~~~~l~~ll~~~p~Le~  190 (414)
                      +++++|++..+......+|..+..+++|++|++++|.+...  .....+++|++|++++| .+++..+..++.++++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            58999998765433333777788899999999999976532  44567999999999999 5687778888999999999


Q ss_pred             EEeeccCCccee----ecCCCC-CCceEEEeecC-CCc-----eEeeeccceeeeEeeeec-c-cceeeeccccccCcee
Q 015001          191 LEIRSCEGLESL----DLVNLS-NLKEIILVNTS-DIK-----RVEIKTSNVNALAIHQTY-L-FPIEVNVSSCGNLKCL  257 (414)
Q Consensus       191 L~l~~c~~~~~l----~i~~l~-~L~~L~l~~~~-~l~-----~~~~~~p~L~~L~l~~~~-~-~~~~~~~~~~~~L~~L  257 (414)
                      |++++|..+...    .+..++ +|++|++++|. .+.     .....+|+|++|+++++. . ......+..+++|++|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            999999444321    244578 99999999983 232     222368999999999987 2 2334467889999999


Q ss_pred             Eeecc-CCchHHHHhhhccCCCCcEEeccccccccc--ccccccccceEEeeccCC
Q 015001          258 KFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VRISSPCLKTLILECCDK  310 (414)
Q Consensus       258 ~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~--l~~~~~~L~~L~l~~c~~  310 (414)
                      +++++ .+.+..+. .+..+++|+.|++++|  ++.  +..-...|+.|++++|..
T Consensus       253 ~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~n~l  305 (336)
T 2ast_B          253 SLSRCYDIIPETLL-ELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCSHF  305 (336)
T ss_dssp             ECTTCTTCCGGGGG-GGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESCCCS
T ss_pred             eCCCCCCCCHHHHH-HHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEecccC
Confidence            99988 45554443 3677999999999998  222  211223477777765543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.41  E-value=2e-13  Score=134.20  Aligned_cols=187  Identities=17%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             cccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceE
Q 015001          134 IIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI  213 (414)
Q Consensus       134 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L  213 (414)
                      .+..+++|++|++++|.+.....+..+++|++|+|++|.++.      +...|+|++|++++|.... +....+++|+.|
T Consensus        53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~~-~~~~~l~~L~~L  125 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR-VSCSRGQGKKNI  125 (487)
T ss_dssp             GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCCC-EEECCCSSCEEE
T ss_pred             HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCCC-CCccccCCCCEE
Confidence            344455555555555544322224445555555555554421      1123455555555443321 112223444444


Q ss_pred             EEeecCCCceEeeeccceeeeEeeeeccc-ceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc
Q 015001          214 ILVNTSDIKRVEIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS  292 (414)
Q Consensus       214 ~l~~~~~l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~  292 (414)
                      ++++|                     ... ..+..++.+++|+.|+++++.+.+.....+...+++|+.|+++++.. ..
T Consensus       126 ~L~~N---------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~  183 (487)
T 3oja_A          126 YLANN---------------------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YD  183 (487)
T ss_dssp             ECCSS---------------------CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CE
T ss_pred             ECCCC---------------------CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-cc
Confidence            44444                     311 11223344455555555544444322222223445555555555321 11


Q ss_pred             cc--ccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee----EEeccCCccceEEEEeecc
Q 015001          293 VR--ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       293 l~--~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~~~~  350 (414)
                      ++  ..+++|+.|++++|... .++   ...++|+.|.+.++..    ..+..+++|+.|+++.++.
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          184 VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             EECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             ccccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence            11  12445555555544322 111   1224455555544433    2345567888888877743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.41  E-value=4e-13  Score=125.35  Aligned_cols=189  Identities=16%  Similarity=0.200  Sum_probs=108.4

Q ss_pred             CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      +++++|++..+.  ...+ |..+..+++|++|++++|.+...+ ...+++|++|+++++.++... ...+..+++|++|+
T Consensus        76 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~  151 (330)
T 1xku_A           76 KNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEE
T ss_pred             CCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCCccC-hhhcccccEEECCCCcccccC-HhHhcCCccccEEE
Confidence            467777765432  1222 445566677777777777654321 112367777777777663222 22356677777777


Q ss_pred             eeccCCcc----eeecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeecccce-eeeccccccCceeEeeccCCch
Q 015001          193 IRSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIED  266 (414)
Q Consensus       193 l~~c~~~~----~l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~  266 (414)
                      +++|....    .-.+..+++|+.|++++| .+..++. ..++|++|+++++..... +..+..+++|+.|+++++.+..
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            77765421    113444677777777776 3333332 236777777777652222 2346667777777777776654


Q ss_pred             HHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccC
Q 015001          267 EWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCD  309 (414)
Q Consensus       267 ~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~  309 (414)
                      .. ...+..+++|+.|+++++. +..++   ..+++|+.|++++|.
T Consensus       231 ~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          231 VD-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             EC-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred             eC-hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence            21 1234566777777777752 22332   255677777777664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.41  E-value=1.2e-13  Score=128.23  Aligned_cols=219  Identities=19%  Similarity=0.112  Sum_probs=114.2

Q ss_pred             hhHHHHHHHHHh--CCCeEEEEEecCCccccCC-ccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHH
Q 015001          102 SLAGRCLGLAIE--SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAI  178 (414)
Q Consensus       102 ~~i~~~l~~~~~--~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l  178 (414)
                      ..+...+.....  +++++|++..+.  ...++ ..+..+++|++|++++|.+.....+..+++|++|++++|.++.   
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~---   94 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE---   94 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE---
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc---
Confidence            344444444332  367777776532  22333 3456677777777777766433336667777777777776532   


Q ss_pred             HHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecCCCceE---e-eeccceeeeEeeeeccccee-eec-cccc
Q 015001          179 ASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRV---E-IKTSNVNALAIHQTYLFPIE-VNV-SSCG  252 (414)
Q Consensus       179 ~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~---~-~~~p~L~~L~l~~~~~~~~~-~~~-~~~~  252 (414)
                         +..+++|++|.+++|... .+....+++|+.|++++| .+..+   . ..+++|++|+++++...... ..+ ..++
T Consensus        95 ---l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  169 (317)
T 3o53_A           95 ---LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD  169 (317)
T ss_dssp             ---EEECTTCCEEECCSSCCS-EEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred             ---ccCCCCcCEEECCCCccC-CcCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence               224467777777766432 233333566666666666 22221   1 13456666666655422211 112 2455


Q ss_pred             cCceeEeeccCCchHHHHhhhccCCCCcEEeccccccc--ccccccccccceEEeeccCCceEeeccCCCeeeEEEeCce
Q 015001          253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL--TSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDL  330 (414)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~--~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~  330 (414)
                      +|++|+++++.+...  .. ...+++|+.|+++++...  ..-...+++|+.|++++|... .++               
T Consensus       170 ~L~~L~L~~N~l~~~--~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~---------------  230 (317)
T 3o53_A          170 TLEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIE---------------  230 (317)
T ss_dssp             TCCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EEC---------------
T ss_pred             cCCEEECCCCcCccc--cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chh---------------
Confidence            666666666555432  11 223556666666654211  111224455555555554221 111               


Q ss_pred             eEEeccCCccceEEEEeecc
Q 015001          331 ISFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       331 ~~~~~~~~~L~~L~l~~~~~  350 (414)
                       ..+..+++|+.|+++.++.
T Consensus       231 -~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          231 -KALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             -TTCCCCTTCCEEECTTCCC
T ss_pred             -hHhhcCCCCCEEEccCCCc
Confidence             1345667888888887744

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.40  E-value=4.6e-13  Score=136.13  Aligned_cols=171  Identities=9%  Similarity=0.078  Sum_probs=116.0

Q ss_pred             hCCCeEEEEEecCCccc----------------cCCcccc--CCCcccEEEecCcccC--CCCccccCcccceeEeeEEE
Q 015001          113 ESEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVC  172 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~  172 (414)
                      .+++++|++....-...                .+|..+.  .+++|++|++++|.+.  .|..+..+++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            36999999987432210                1899888  9999999999999764  34678899999999999998


Q ss_pred             -cChHHHHHHHh------CCCcccEEEeeccCCccee----ecCCCCCCceEEEeecCCCc-eEe--eeccceeeeEeee
Q 015001          173 -ADDQAIASLIS------GCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIK-RVE--IKTSNVNALAIHQ  238 (414)
Q Consensus       173 -~~~~~l~~ll~------~~p~Le~L~l~~c~~~~~l----~i~~l~~L~~L~l~~~~~l~-~~~--~~~p~L~~L~l~~  238 (414)
                       ++...+..-+.      .+++|++|++++|... .+    .+..+++|+.|++++| .+. .++  ..+++|++|++++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAY  362 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCC
Confidence             66523333333      3599999999998655 33    3567889999999988 333 332  2467888888887


Q ss_pred             ecccceeeecccccc-CceeEeeccCCchHHHHhhhcc--CCCCcEEecccc
Q 015001          239 TYLFPIEVNVSSCGN-LKCLKFDFLPIEDEWLCNGISK--LPLLEYLSMTKC  287 (414)
Q Consensus       239 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~c  287 (414)
                      +....++..+..+++ |++|+++++.+..  ++..+..  +++|+.|+++++
T Consensus       363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          363 NQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             SEEEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSS
T ss_pred             CccccccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCC
Confidence            763344445666777 7777777766552  2222222  225555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=7.5e-13  Score=122.28  Aligned_cols=187  Identities=19%  Similarity=0.165  Sum_probs=138.2

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      .+++++|++..+.  ...+| .+..+++|++|++++|.+........+++|++|+++++.++.-  . .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEE
Confidence            3588999887643  23344 4677899999999999886655588899999999999988432  1 367899999999


Q ss_pred             eeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (414)
Q Consensus       193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (414)
                      +++|.....-.+..+++|+.|++++| .+..+.  ..+++|++|+++++....+.. +..+++|+.|+++++.+.+.  .
T Consensus       114 l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~--~  189 (308)
T 1h6u_A          114 LTSTQITDVTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI--S  189 (308)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--G
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC--h
Confidence            99986543334677899999999998 333332  257899999999887333222 78889999999998887652  2


Q ss_pred             hhhccCCCCcEEecccccccccc-cccccccceEEeeccCC
Q 015001          271 NGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDK  310 (414)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~~~~~l-~~~~~~L~~L~l~~c~~  310 (414)
                      . +..+++|+.|+++++...... ...+++|+.|++++|..
T Consensus       190 ~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          190 P-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             G-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             h-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence            2 677899999999996322211 23678899999988753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.40  E-value=7.8e-13  Score=131.27  Aligned_cols=122  Identities=12%  Similarity=0.093  Sum_probs=79.8

Q ss_pred             eccceeeeEeeeec-ccceeeeccccccCceeEeeccCCch-HHHHhhhccCCCCcEEeccccccccccc----cccccc
Q 015001          227 KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCL  300 (414)
Q Consensus       227 ~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~~~~l~----~~~~~L  300 (414)
                      .+++|++|+++++. ....+..++.+++|+.|+++++.+.. ..++..+..+++|+.|+++++.....++    ..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            56778888888776 22234456788889999998888875 2344557788899999998864433233    245778


Q ss_pred             ceEEeeccCCceEeeccC-CCeeeEEEeCcee----EEeccCCccceEEEEee
Q 015001          301 KTLILECCDKLIQVEIET-PNLSIFKYHGDLI----SFSSNALSLSETSLCFS  348 (414)
Q Consensus       301 ~~L~l~~c~~l~~~~~~~-p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~~  348 (414)
                      +.|++++|...+..+... ++|+.|.+.++..    ..+.++++|+.|+++.+
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence            888888776544333333 4677777766654    22335667777777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.40  E-value=6.7e-13  Score=133.16  Aligned_cols=212  Identities=17%  Similarity=0.143  Sum_probs=105.0

Q ss_pred             cCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce----eecC
Q 015001          130 NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES----LDLV  205 (414)
Q Consensus       130 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~----l~i~  205 (414)
                      .+|..+..+ +|++|++++|.+...+ ...+++|+.|++.++.......   ...+|+|++|++++|.....    ..+.
T Consensus       296 ~l~~~~~~~-~L~~L~l~~n~~~~l~-~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~  370 (570)
T 2z63_A          296 RVKDFSYNF-GWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDF  370 (570)
T ss_dssp             SCCBCCSCC-CCSEEEEESCBCSSCC-BCBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred             hhhhhhccC-CccEEeeccCcccccC-cccccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCcccccccccc
Confidence            344444444 5555555555443211 1345555555555554421110   04556666666665543211    1233


Q ss_pred             CCCCCceEEEeecCCCceEe---eeccceeeeEeeeecccce--eeeccccccCceeEeeccCCchHHHHhhhccCCCCc
Q 015001          206 NLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE  280 (414)
Q Consensus       206 ~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  280 (414)
                      .+++|+.|++++| .+..+.   ..+++|++|+++++.....  ...+.++++|+.|+++++.+... ....+..+++|+
T Consensus       371 ~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~  448 (570)
T 2z63_A          371 GTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLE  448 (570)
T ss_dssp             TCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCC
T ss_pred             ccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhhhhcCCcCc
Confidence            4566666666665 222222   2455666666665541111  12345566666666666654432 222345566666


Q ss_pred             EEeccccccc----ccccccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001          281 YLSMTKCHKL----TSVRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS  348 (414)
Q Consensus       281 ~L~l~~c~~~----~~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~  348 (414)
                      .|++++|...    ......+++|+.|++++|......+   ...++|+.+.+.++..     ..+.++++|+.|+++.+
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            6666665322    1122355666777776664433222   2335666666666544     23455667777777666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.39  E-value=1.6e-13  Score=138.43  Aligned_cols=192  Identities=17%  Similarity=0.100  Sum_probs=96.4

Q ss_pred             cccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEee----------cCCCceE
Q 015001          157 NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVN----------TSDIKRV  224 (414)
Q Consensus       157 ~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~----------~~~l~~~  224 (414)
                      ...+++|++|+|++|.+++..+..++..||+|++|++.++.....+  ....+++|++|++.+          |..+...
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence            3456667777776666665566556666777777766633211111  112346666666663          4233211


Q ss_pred             -----eeeccceeeeEeeeec-ccceeeecc-ccccCceeEee----ccCCch----HHHHhhhccCCCCcEEecccccc
Q 015001          225 -----EIKTSNVNALAIHQTY-LFPIEVNVS-SCGNLKCLKFD----FLPIED----EWLCNGISKLPLLEYLSMTKCHK  289 (414)
Q Consensus       225 -----~~~~p~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~----~~~~~~----~~~~~~~~~~~~L~~L~l~~c~~  289 (414)
                           ...+|+|++|++..+. .......+. .+++|++|++.    .+.+++    ..+..++..+++|+.|+++.|..
T Consensus       369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~  448 (592)
T 3ogk_B          369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG  448 (592)
T ss_dssp             HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred             HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence                 1235666666664333 111111222 25666666664    233333    23444455566666666655432


Q ss_pred             -cc-----cccccccccceEEeeccCCce----EeeccCCCeeeEEEeCcee------EEeccCCccceEEEEee
Q 015001          290 -LT-----SVRISSPCLKTLILECCDKLI----QVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFS  348 (414)
Q Consensus       290 -~~-----~l~~~~~~L~~L~l~~c~~l~----~~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~L~l~~~  348 (414)
                       +.     .+...+++|+.|++++|....    .+...+++|+.|++.++..      ....++++|+.|+++.+
T Consensus       449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY  523 (592)
T ss_dssp             GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred             CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence             11     112235666666666654321    1123445666666666653      23344566666666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.39  E-value=4.7e-13  Score=134.29  Aligned_cols=228  Identities=13%  Similarity=0.124  Sum_probs=170.4

Q ss_pred             CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      .++++++..........|..+..+++|++|+++++.+... .....+ +|+.|++.++.+..  +.  ...+++|++|.+
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l  332 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTF  332 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEE
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeC
Confidence            4566666654333445666777889999999999977533 445666 99999999998741  11  147899999999


Q ss_pred             eccCCcceeecCCCCCCceEEEeecCCCceEe------eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchH
Q 015001          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE  267 (414)
Q Consensus       194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  267 (414)
                      .+|..........+++|+.|++++| .+....      ..+++|++|+++++.....+..+..+++|++|++.++.+...
T Consensus       333 ~~n~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          333 TSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             ESCBSCCBCCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred             cCCccccccccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence            9987665554466899999999998 444432      257999999999987444455588999999999999887653


Q ss_pred             HHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCCc-eEee---ccCCCeeeEEEeCcee-----EEec
Q 015001          268 WLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKL-IQVE---IETPNLSIFKYHGDLI-----SFSS  335 (414)
Q Consensus       268 ~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l-~~~~---~~~p~L~~l~~~~~~~-----~~~~  335 (414)
                      .....+..+++|+.|++++|......+   ..+++|+.|++++|... ..++   ...++|+.|.+.++..     ..+.
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence            333346789999999999985443332   36889999999998754 2332   3557899999998876     3456


Q ss_pred             cCCccceEEEEee
Q 015001          336 NALSLSETSLCFS  348 (414)
Q Consensus       336 ~~~~L~~L~l~~~  348 (414)
                      ++++|++|+++.+
T Consensus       492 ~l~~L~~L~l~~n  504 (570)
T 2z63_A          492 SLSSLQVLNMASN  504 (570)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             cccCCCEEeCCCC
Confidence            7899999999887

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=7.6e-13  Score=129.01  Aligned_cols=206  Identities=19%  Similarity=0.105  Sum_probs=94.0

Q ss_pred             CcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~  214 (414)
                      +++++|+++++.+...  ..+..+++|+.|+|+++.++.... ..+..+++|++|+|++|......  .+..+++|+.|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            3455555555544321  334455555555555554421111 11344555555555554322100  123345555555


Q ss_pred             EeecCCCceEee----eccceeeeEeeeec-cccee-eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc
Q 015001          215 LVNTSDIKRVEI----KTSNVNALAIHQTY-LFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (414)
Q Consensus       215 l~~~~~l~~~~~----~~p~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (414)
                      +++| .+..+..    .+++|++|+++++. ...+. ..+.++++|+.|+++++.+..-  + .+..+++|+.|+++++.
T Consensus       154 L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          154 LRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P-NLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C-CCTTCTTCCEEECTTSC
T ss_pred             CCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c-cccccccccEEECcCCc
Confidence            5555 2333321    34555555555432 11111 1244455555555555554431  1 13445555555555542


Q ss_pred             cccc---ccccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001          289 KLTS---VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (414)
Q Consensus       289 ~~~~---l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~  349 (414)
                      ....   ....+++|+.|++++|......   ....++|+.|.+.++..     ..+.++++|+.|+++.|+
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence            2111   1124455555555554332211   12234555555555543     345667888888888774

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.39  E-value=6.9e-13  Score=128.88  Aligned_cols=206  Identities=17%  Similarity=0.139  Sum_probs=106.7

Q ss_pred             CcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~  214 (414)
                      ++++.|+++++.+...  ..+..+++|++|+|+++.+..... ..+.++++|++|++++|......  .+..+++|+.|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            4566666666654321  345566666666666665522111 12445666666666665332111  233456666666


Q ss_pred             EeecCCCceEee----eccceeeeEeeeec-cccee-eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc
Q 015001          215 LVNTSDIKRVEI----KTSNVNALAIHQTY-LFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (414)
Q Consensus       215 l~~~~~l~~~~~----~~p~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (414)
                      ++++ .+..+..    .+++|++|+++++. ...+. ..+.++++|++|+++++.+..  ++. +..+++|+.|+++++.
T Consensus       143 L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          143 LRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPN-LTPLIKLDELDLSGNH  218 (440)
T ss_dssp             CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CCC-CTTCSSCCEEECTTSC
T ss_pred             CCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--ccc-cCCCcccCEEECCCCc
Confidence            6665 3333332    34666666666533 11111 134556666666666665543  111 4455666666666652


Q ss_pred             cccc---ccccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001          289 KLTS---VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (414)
Q Consensus       289 ~~~~---l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~  349 (414)
                      ....   ....+++|+.|++++|......   ....++|+.|.+.++..     ..+.++++|+.|+++.|+
T Consensus       219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            2111   1124556666666665432211   12335666666666544     335567888888887774

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=1.1e-12  Score=121.27  Aligned_cols=186  Identities=20%  Similarity=0.163  Sum_probs=139.6

Q ss_pred             CCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEe
Q 015001          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV  216 (414)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~  216 (414)
                      .+++|++|++++|.+...+....+++|++|++++|.+.+...   +..+++|++|++++|.....-.+..+++|+.|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence            468999999999988766678889999999999998843222   78999999999999965432246678999999999


Q ss_pred             ecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc-
Q 015001          217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV-  293 (414)
Q Consensus       217 ~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l-  293 (414)
                      +| .+..+.  ..+++|++|+++++....+. .+..+++|+.|+++++.+.+  +.. +..+++|+.|+++++.. ..+ 
T Consensus       116 ~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l-~~~~  189 (308)
T 1h6u_A          116 ST-QITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKI-SDIS  189 (308)
T ss_dssp             TS-CCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC-CCCG
T ss_pred             CC-CCCCchhhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCcc-CcCh
Confidence            99 333332  26789999999998733322 27889999999999998875  222 67899999999999632 222 


Q ss_pred             -cccccccceEEeeccCCceEe-eccCCCeeeEEEeCcee
Q 015001          294 -RISSPCLKTLILECCDKLIQV-EIETPNLSIFKYHGDLI  331 (414)
Q Consensus       294 -~~~~~~L~~L~l~~c~~l~~~-~~~~p~L~~l~~~~~~~  331 (414)
                       ...+++|++|++++|...... ....++|+.+.+.++..
T Consensus       190 ~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred             hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence             247789999999988643211 23456778877777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.37  E-value=9.2e-13  Score=125.87  Aligned_cols=230  Identities=13%  Similarity=0.129  Sum_probs=155.4

Q ss_pred             hCCCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCccc
Q 015001          113 ESEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  189 (414)
                      ..+++.+++...  ....+|.. +..+++|++|+++++.+...  ..+..+++|++|+|+++.++... ...+..+++|+
T Consensus        44 l~~l~~l~l~~~--~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLT  120 (390)
T ss_dssp             GCCCSEEEEESC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred             cCCceEEEecCC--chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-HHHhcCCCCCC
Confidence            368999998763  34467765 45689999999999977532  46788999999999999874322 22357899999


Q ss_pred             EEEeeccCCcceee---cCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceeeeccccccCceeEeecc
Q 015001          190 YLEIRSCEGLESLD---LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL  262 (414)
Q Consensus       190 ~L~l~~c~~~~~l~---i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  262 (414)
                      +|++++|... .+.   +..+++|+.|++++| .+..+.    ..+++|++|+++++.....  .++.+++|+.|+++++
T Consensus       121 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS
T ss_pred             EEECCCCccC-cCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc
Confidence            9999998654 232   456899999999998 344332    2578999999998873322  3455666666666555


Q ss_pred             CCchHHHH--------------h-hhccCCCCcEEeccccccccc-ccccccccceEEeeccCCceEee---ccCCCeee
Q 015001          263 PIEDEWLC--------------N-GISKLPLLEYLSMTKCHKLTS-VRISSPCLKTLILECCDKLIQVE---IETPNLSI  323 (414)
Q Consensus       263 ~~~~~~~~--------------~-~~~~~~~L~~L~l~~c~~~~~-l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~  323 (414)
                      .+..-...              . ....+++|+.|+++++..... ....+++|+.|++++|......+   ...++|+.
T Consensus       197 ~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             CCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             cccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence            44320000              0 012245677777777532211 12367889999998886543322   34578999


Q ss_pred             EEEeCcee----EEeccCCccceEEEEeec
Q 015001          324 FKYHGDLI----SFSSNALSLSETSLCFSS  349 (414)
Q Consensus       324 l~~~~~~~----~~~~~~~~L~~L~l~~~~  349 (414)
                      |.+.++..    .....+++|+.|+++.+.
T Consensus       277 L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          277 LYISNNRLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             EECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             EECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence            99888766    334567999999998883

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.37  E-value=6.8e-13  Score=129.35  Aligned_cols=211  Identities=15%  Similarity=0.048  Sum_probs=150.1

Q ss_pred             CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      ++++.|++....  ...+ |..+..+++|++|++++|.+...  ..+..+++|++|+|++|.++.-. ...+..+++|++
T Consensus        75 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCE
T ss_pred             CCccEEECcCCc--CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCE
Confidence            488888887632  2233 44567789999999999876432  45778899999999998774211 223567899999


Q ss_pred             EEeeccCCccee---ecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccceeeeccccccCceeEeeccC
Q 015001          191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       191 L~l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (414)
                      |++++|... .+   .+..+++|+.|++++|..+..+..    .+++|++|+++++....+ ..+..+++|+.|+++++.
T Consensus       152 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSC
T ss_pred             EECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCc
Confidence            999988643 22   355679999999998866666653    468899999988874333 257788899999999888


Q ss_pred             CchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEe----eccCCCeeeEEEeCcee
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI  331 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~  331 (414)
                      +... ....+..+++|+.|+++++.....   ....+++|+.|++++|... .+    ....++|+.+.+.+++.
T Consensus       230 l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          230 FPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred             Cccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCc
Confidence            7652 233467789999999998633222   1236788999999888542 32    23457788888888765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=6.2e-14  Score=142.56  Aligned_cols=213  Identities=13%  Similarity=0.132  Sum_probs=146.9

Q ss_pred             cCCccccCCCcccEEEecCcccCC-------------------CCccc--cCcccceeEeeEEEcChHHHHHHHhCCCcc
Q 015001          130 NLPEIIFYVESLHVLELSYCKLQQ-------------------PSENV--KLFSLRKLALREVCADDQAIASLISGCPLI  188 (414)
Q Consensus       130 ~lp~~~~~~~~L~~L~L~~~~~~~-------------------~~~~~--~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  188 (414)
                      .+|..+..+++|++|++++|.+..                   |....  .+++|++|+|++|.+... +...+.++++|
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L  275 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEM  275 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCC
Confidence            478888899999999999997753                   45566  899999999999986332 22346789999


Q ss_pred             cEEEeeccCCcc--ee--ecCC------CCCCceEEEeecCCCceEee-----eccceeeeEeeeeccc-ceeeeccccc
Q 015001          189 EYLEIRSCEGLE--SL--DLVN------LSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYLF-PIEVNVSSCG  252 (414)
Q Consensus       189 e~L~l~~c~~~~--~l--~i~~------l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~l~~~~~~-~~~~~~~~~~  252 (414)
                      ++|++++|..+.  .+  .+..      +++|+.|++++| .+..++.     .+++|++|+++++... .++ .++.++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            999999997332  22  2222      489999999999 3434432     5789999999998744 555 788899


Q ss_pred             cCceeEeeccCCchHHHHhhhccCCC-CcEEecccccccccccc-----cccccceEEeeccCCceEeec----------
Q 015001          253 NLKCLKFDFLPIEDEWLCNGISKLPL-LEYLSMTKCHKLTSVRI-----SSPCLKTLILECCDKLIQVEI----------  316 (414)
Q Consensus       253 ~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~~~~l~~-----~~~~L~~L~l~~c~~l~~~~~----------  316 (414)
                      +|+.|+++++.+.  .++..+..+++ |+.|+++++... .++.     .+++|+.|++++|......+.          
T Consensus       354 ~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          354 KLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             EESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred             CCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence            9999999999877  34444677888 999999996422 3432     234788888877754332211          


Q ss_pred             cCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001          317 ETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS  348 (414)
Q Consensus       317 ~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~  348 (414)
                      ..++|+.|.+.++..     ..+.++++|+.|+++.+
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N  467 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN  467 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence            223566666555443     12223445555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.36  E-value=2.2e-13  Score=137.36  Aligned_cols=237  Identities=11%  Similarity=0.047  Sum_probs=155.2

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCccc--------------------------C------CCCccccC
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKL--------------------------Q------QPSENVKL  160 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~--------------------------~------~~~~~~~l  160 (414)
                      .+++++|++..+. ....+|..+..+++|++|+++.+..                          .      .+.....+
T Consensus       210 ~~~L~~L~L~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~  288 (594)
T 2p1m_B          210 CPNLKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC  288 (594)
T ss_dssp             CTTCCEEECCTTS-CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred             CCCCcEEecCCCC-cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence            3688888877642 1222555555667777776544321                          0      00112257


Q ss_pred             cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee-e-cCCCCCCceEEEeec--------CCCceE-----e
Q 015001          161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-D-LVNLSNLKEIILVNT--------SDIKRV-----E  225 (414)
Q Consensus       161 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l-~-i~~l~~L~~L~l~~~--------~~l~~~-----~  225 (414)
                      ++|++|++++|.+++..+..++..||+|++|.+.+|.....+ . ...+++|+.|++..|        ..+...     .
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            899999999998888888888899999999999988221111 1 123689999999543        222221     1


Q ss_pred             eeccceeeeEeeeecccc--eeeeccccccCceeEee--c----cCCc----hHHHHhhhccCCCCcEEecccccc---c
Q 015001          226 IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFD--F----LPIE----DEWLCNGISKLPLLEYLSMTKCHK---L  290 (414)
Q Consensus       226 ~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~--~----~~~~----~~~~~~~~~~~~~L~~L~l~~c~~---~  290 (414)
                      ..+|+|++|.+..+....  .......+++|++|++.  +    +.++    +..+..++..+++|+.|++++.-.   +
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~  448 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVF  448 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHH
Confidence            247899999765544111  11112358999999998  3    4455    556777788899999999976211   1


Q ss_pred             ccccccccccceEEeeccCCceE----eeccCCCeeeEEEeCcee------EEeccCCccceEEEEeecc
Q 015001          291 TSVRISSPCLKTLILECCDKLIQ----VEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       291 ~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~L~l~~~~~  350 (414)
                      ..+...+++|+.|++++|.....    +...+|+|+.|.+.++..      .....+++|+.|+++.++.
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            11222478999999999875322    123478999999998875      3445679999999988854

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.36  E-value=8.8e-13  Score=128.12  Aligned_cols=212  Identities=14%  Similarity=0.050  Sum_probs=124.3

Q ss_pred             CCCeEEEEEecCCccccCC-ccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      ++++.|++....  ...++ ..+..+++|++|++++|.+...  ..+..+++|++|+|++|.++.-. ...+..+++|++
T Consensus        64 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCC--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred             CCCcEEEccCCc--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence            466777666532  22222 3455677777777777765432  34566777777777777663211 112456777777


Q ss_pred             EEeeccCCcce--eecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccceeeeccccccCceeEeeccCC
Q 015001          191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (414)
Q Consensus       191 L~l~~c~~~~~--l~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (414)
                      |++++|.....  ..+..+++|+.|++.+|..+..+..    .+++|++|+++++....++ .+..+++|+.|+++++.+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence            77777653311  1244567777777777655555442    4577777777776633322 456677777777777766


Q ss_pred             chHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEee----ccCCCeeeEEEeCcee
Q 015001          265 EDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQVE----IETPNLSIFKYHGDLI  331 (414)
Q Consensus       265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~~~~~  331 (414)
                      ... ....+..+++|+.|+++++.....   ....+++|+.|++++|... .++    ...++|+.+.+.+++.
T Consensus       220 ~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          220 SAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred             Ccc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence            542 123356677777777777532211   1225677777777776432 221    2346677777766654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.35  E-value=1.1e-13  Score=135.25  Aligned_cols=266  Identities=14%  Similarity=0.136  Sum_probs=175.9

Q ss_pred             HHhCCCeEEEEEecCCccc---cCCccccCCCcccEEEecCcccCCC---CccccCc----ccceeEeeEEEcCh---HH
Q 015001          111 AIESEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP---SENVKLF----SLRKLALREVCADD---QA  177 (414)
Q Consensus       111 ~~~~~l~~L~l~~~~~~~~---~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~----~L~~L~L~~~~~~~---~~  177 (414)
                      ...+++++|++..+.....   .++..+..+++|++|++++|.+...   .....++    +|++|+|++|.+++   ..
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            4457999999998643322   5666777889999999999876432   1122344    79999999999865   35


Q ss_pred             HHHHHhCCCcccEEEeeccCCcce----e--e-cCCCCCCceEEEeecCCCceEe--------eeccceeeeEeeeeccc
Q 015001          178 IASLISGCPLIEYLEIRSCEGLES----L--D-LVNLSNLKEIILVNTSDIKRVE--------IKTSNVNALAIHQTYLF  242 (414)
Q Consensus       178 l~~ll~~~p~Le~L~l~~c~~~~~----l--~-i~~l~~L~~L~l~~~~~l~~~~--------~~~p~L~~L~l~~~~~~  242 (414)
                      +...+..+++|++|++++|.....    +  . ....++|++|++++| .+....        ..+++|++|+++++...
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            566688999999999999864311    1  1 122468999999999 333211        14689999999988722


Q ss_pred             ce-eeecc-----ccccCceeEeeccCCchHH---HHhhhccCCCCcEEecccccccc----cc----cccccccceEEe
Q 015001          243 PI-EVNVS-----SCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT----SV----RISSPCLKTLIL  305 (414)
Q Consensus       243 ~~-~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~----~l----~~~~~~L~~L~l  305 (414)
                      .. ...+.     ..++|++|+++++.+....   +...+..+++|++|+++++....    .+    ...+++|++|++
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            11 11111     3569999999999988753   55566789999999999973211    11    124789999999


Q ss_pred             eccCCceE----ee---ccCCCeeeEEEeCcee----------EEeccCCccceEEEEeecchhhhHHHHHHHHHHHHhh
Q 015001          306 ECCDKLIQ----VE---IETPNLSIFKYHGDLI----------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMF  368 (414)
Q Consensus       306 ~~c~~l~~----~~---~~~p~L~~l~~~~~~~----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  368 (414)
                      ++|.....    +.   ...++|++|.+.++..          ....+.++|++|+++.+.........+.....    .
T Consensus       264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~----~  339 (461)
T 1z7x_W          264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA----Q  339 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH----H
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh----h
Confidence            99854321    21   2368899999988765          11123379999999877433333333333222    1


Q ss_pred             hhcceeeEEeeec
Q 015001          369 QKFSKVLNLQCRE  381 (414)
Q Consensus       369 ~~~~~~~~~~~~~  381 (414)
                      ....+.+++.+++
T Consensus       340 ~~~L~~L~Ls~n~  352 (461)
T 1z7x_W          340 NRFLLELQISNNR  352 (461)
T ss_dssp             CSSCCEEECCSSB
T ss_pred             CCCccEEEccCCc
Confidence            2334556666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.35  E-value=2e-13  Score=133.28  Aligned_cols=217  Identities=16%  Similarity=0.089  Sum_probs=102.0

Q ss_pred             CccccCCCcccEEEecCcccCCC--C-----ccccCcccceeEeeEEEcChH---HHHHHHhCCCcccEEEeeccCCcce
Q 015001          132 PEIIFYVESLHVLELSYCKLQQP--S-----ENVKLFSLRKLALREVCADDQ---AIASLISGCPLIEYLEIRSCEGLES  201 (414)
Q Consensus       132 p~~~~~~~~L~~L~L~~~~~~~~--~-----~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~~p~Le~L~l~~c~~~~~  201 (414)
                      +..+..+++|++|++++|.+...  .     .....++|++|++++|.+++.   .+...+..+++|++|++++|.....
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            34444455555555555543211  0     011233455555555554332   2233344555666666655542110


Q ss_pred             -e-ecC-----CCCCCceEEEeecCCCce-----Ee---eeccceeeeEeeeecccce------eeeccccccCceeEee
Q 015001          202 -L-DLV-----NLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLFPI------EVNVSSCGNLKCLKFD  260 (414)
Q Consensus       202 -l-~i~-----~l~~L~~L~l~~~~~l~~-----~~---~~~p~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~  260 (414)
                       . .+.     ..++|+.|++++| .+..     +.   ..+++|++|+++++.....      ......+++|++|+++
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~  264 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW  264 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence             0 000     1246666666665 2221     11   1346666666666541110      0111235666667766


Q ss_pred             ccCCchHH---HHhhhccCCCCcEEecccccccc----ccc----ccccccceEEeeccCCceE----e---eccCCCee
Q 015001          261 FLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT----SVR----ISSPCLKTLILECCDKLIQ----V---EIETPNLS  322 (414)
Q Consensus       261 ~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~----~l~----~~~~~L~~L~l~~c~~l~~----~---~~~~p~L~  322 (414)
                      ++.+....   +...+..+++|++|+++++....    .+.    ...++|++|++++|.....    +   ....++|+
T Consensus       265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  344 (461)
T 1z7x_W          265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL  344 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc
Confidence            66666543   33344556667777776652111    111    1224677777776653221    1   11336677


Q ss_pred             eEEEeCcee-----EE----ec-cCCccceEEEEeec
Q 015001          323 IFKYHGDLI-----SF----SS-NALSLSETSLCFSS  349 (414)
Q Consensus       323 ~l~~~~~~~-----~~----~~-~~~~L~~L~l~~~~  349 (414)
                      .+.+.++..     ..    +. ..++|++|+++.+.
T Consensus       345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            777766644     11    11 14577777776663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=134.94  Aligned_cols=96  Identities=11%  Similarity=-0.065  Sum_probs=54.3

Q ss_pred             ccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceE---eeccCCCeeeEE
Q 015001          252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQ---VEIETPNLSIFK  325 (414)
Q Consensus       252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~---~~~~~p~L~~l~  325 (414)
                      ++|+.|+++++.+... ....+..+++|+.|+++++.....   ....+++|+.|++++|.....   .....++|+.+.
T Consensus       266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            4555555555554321 122345566666666666422211   122456777777777653221   123446777777


Q ss_pred             EeCcee-----EEeccCCccceEEEEee
Q 015001          326 YHGDLI-----SFSSNALSLSETSLCFS  348 (414)
Q Consensus       326 ~~~~~~-----~~~~~~~~L~~L~l~~~  348 (414)
                      +.++..     ..+.++++|+.|+++.+
T Consensus       345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          345 LQKNHIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             CCCCCCCccChhhhcCCCCCCEEECCCC
Confidence            776654     34667788888888877

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=6.5e-13  Score=138.31  Aligned_cols=81  Identities=14%  Similarity=0.055  Sum_probs=60.8

Q ss_pred             CCCeEEEEEecCCccccCCc--cccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCc-ccE
Q 015001          114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL-IEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~-Le~  190 (414)
                      +++++|++..+.-.  .+|.  .+..+++|+.|++++|.+...+.+..+++|+.|+|++|.+.  .+...+..+++ |+.
T Consensus       548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~  623 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG  623 (876)
T ss_dssp             TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred             CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence            48888888764433  7888  78888999999999987763356778888999999888774  23333567777 888


Q ss_pred             EEeeccCC
Q 015001          191 LEIRSCEG  198 (414)
Q Consensus       191 L~l~~c~~  198 (414)
                      |++++|..
T Consensus       624 L~Ls~N~L  631 (876)
T 4ecn_A          624 LGFSHNKL  631 (876)
T ss_dssp             EECCSSCC
T ss_pred             EECcCCCC
Confidence            88888754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.33  E-value=2e-12  Score=130.49  Aligned_cols=102  Identities=14%  Similarity=0.033  Sum_probs=75.2

Q ss_pred             eccceeeeEeeeecccc-eeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccce
Q 015001          227 KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKT  302 (414)
Q Consensus       227 ~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~  302 (414)
                      .+++|++|+++++.... .+..++.+++|+.|+++++.+..  ++.....+|+|+.|+++++... .++   ..+++|+.
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~  328 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN  328 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCE
Confidence            46788888888877322 24567889999999999998765  3334466899999999997432 333   36789999


Q ss_pred             EEeeccCCceEeeccCCCeeeEEEeCcee
Q 015001          303 LILECCDKLIQVEIETPNLSIFKYHGDLI  331 (414)
Q Consensus       303 L~l~~c~~l~~~~~~~p~L~~l~~~~~~~  331 (414)
                      |++++|.....-....++|+.+.+.+++.
T Consensus       329 L~L~~N~l~~~~~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          329 LYLDHNSIVTLKLSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             EECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred             EECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence            99999875432234567899999988775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=2e-12  Score=134.73  Aligned_cols=151  Identities=13%  Similarity=0.106  Sum_probs=105.6

Q ss_pred             hCCCeEEEEEecCCccc----------------cCCcccc--CCCcccEEEecCcccC--CCCccccCcccceeEeeEEE
Q 015001          113 ESEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVC  172 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~  172 (414)
                      .+++++|+++...-...                .+|..+.  .+++|++|++++|.+.  .|..+..+++|+.|+|++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            35899999987432221                2888877  8999999999998753  33567889999999999997


Q ss_pred             -cChHHHHHH-------HhCCCcccEEEeeccCCccee----ecCCCCCCceEEEeecCCCceEe--eeccceeeeEeee
Q 015001          173 -ADDQAIASL-------ISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQ  238 (414)
Q Consensus       173 -~~~~~l~~l-------l~~~p~Le~L~l~~c~~~~~l----~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~  238 (414)
                       ++...+..-       +..+|+|+.|++++|... .+    .+..+++|+.|++++| .+..++  ..+++|+.|++++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-CCCBCCCCCTTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-CcccchhhcCCCcceEEECcC
Confidence             654122221       235669999999988654 33    3566788888888887 233332  2467788888887


Q ss_pred             ecccceeeecccccc-CceeEeeccCCc
Q 015001          239 TYLFPIEVNVSSCGN-LKCLKFDFLPIE  265 (414)
Q Consensus       239 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~  265 (414)
                      +....++..+..+++ |+.|+++++.+.
T Consensus       605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             SCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CccccchHHHhhccccCCEEECcCCCCC
Confidence            764445555667777 777777777655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.32  E-value=2.4e-12  Score=117.46  Aligned_cols=201  Identities=16%  Similarity=0.080  Sum_probs=121.6

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---  202 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---  202 (414)
                      ...+|..+  .++|++|+++++.+...  ..+..+++|++|+++++.++... ...+..+++|++|++++|..+..+   
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence            33455433  36888888888876532  34677888888888887764221 123567888888888888644333   


Q ss_pred             ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCC
Q 015001          203 DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLP  277 (414)
Q Consensus       203 ~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  277 (414)
                      .+..+++|+.|++++| .+..+.    ..+++|++|+++++....+.. .++.+++|++|+++++.+... ....+..++
T Consensus       100 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~  177 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLH  177 (285)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred             HhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCcc
Confidence            3455788888888887 333321    245777777777766332222 256677777777777766531 112245567


Q ss_pred             CCcEEeccccccccccc---ccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEeec
Q 015001          278 LLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS  349 (414)
Q Consensus       278 ~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~  349 (414)
                      +|+.|+++++......+   ..+++|+.|++++|.... +               ....+.++++|+.|+++.++
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---------------~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-L---------------PTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-C---------------CHHHHTTCTTCCEEECCSSC
T ss_pred             ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-C---------------CHHHcccCcccCEEeccCCC
Confidence            77777777753222211   245666777666653221 1               00235567788888887773

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.32  E-value=2.6e-13  Score=129.51  Aligned_cols=195  Identities=20%  Similarity=0.197  Sum_probs=105.9

Q ss_pred             CCCeEEEEEecCCcc---ccCCccccCCCcccEEEecCcccCCC-----Cc-------cccCcccceeEeeEEEcChH--
Q 015001          114 SEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP-----SE-------NVKLFSLRKLALREVCADDQ--  176 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~-----~~-------~~~l~~L~~L~L~~~~~~~~--  176 (414)
                      +++++|++..+....   ..++..+..+++|++|++++|.+...     ..       ...+++|++|+|++|.++..  
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            577777776532111   12333455677778887777643211     11       24667777777777777443  


Q ss_pred             -HHHHHHhCCCcccEEEeeccCCcce----e--ecCCC---------CCCceEEEeecCCCc--eEe------eecccee
Q 015001          177 -AIASLISGCPLIEYLEIRSCEGLES----L--DLVNL---------SNLKEIILVNTSDIK--RVE------IKTSNVN  232 (414)
Q Consensus       177 -~l~~ll~~~p~Le~L~l~~c~~~~~----l--~i~~l---------~~L~~L~l~~~~~l~--~~~------~~~p~L~  232 (414)
                       .+...+..+++|++|++++|.....    +  .+..+         ++|+.|++++| .+.  .+.      ..+++|+
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcC
Confidence             3444566777777777777754210    0  01112         67777777776 222  111      1355677


Q ss_pred             eeEeeeecccc------eeeeccccccCceeEeeccCCch---HHHHhhhccCCCCcEEeccccccccc----ccc----
Q 015001          233 ALAIHQTYLFP------IEVNVSSCGNLKCLKFDFLPIED---EWLCNGISKLPLLEYLSMTKCHKLTS----VRI----  295 (414)
Q Consensus       233 ~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~c~~~~~----l~~----  295 (414)
                      +|+++++....      .+..+..+++|+.|+++++.+.+   ..+...+..+++|+.|++++|.....    ++.    
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            77776665220      11144566677777777666653   22344455666777777776532111    111    


Q ss_pred             -cccccceEEeeccC
Q 015001          296 -SSPCLKTLILECCD  309 (414)
Q Consensus       296 -~~~~L~~L~l~~c~  309 (414)
                       .+++|++|++++|.
T Consensus       271 ~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          271 LENIGLQTLRLQYNE  285 (386)
T ss_dssp             CSSCCCCEEECCSSC
T ss_pred             ccCCCeEEEECcCCc
Confidence             15666666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.32  E-value=1.4e-11  Score=120.04  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=70.6

Q ss_pred             CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~  218 (414)
                      ++|++|++++|.+...+.+..+++|++|+++++.++.  +.   ...++|++|++++|....--.+..+++|+.|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            4566666666655433345566666666666665421  11   122466666666654322113445566666666666


Q ss_pred             CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                       .+..++...++|++|+++++....++ .++.+++|++|+++++.+..  +   ....++|+.|+++++
T Consensus       206 -~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          206 -SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--L---PDLPPSLEALNVRDN  267 (454)
T ss_dssp             -CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--C---CSCCTTCCEEECCSS
T ss_pred             -cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--c---cccccccCEEECCCC
Confidence             33333333356666666665533333 35566666666666655543  1   112345555555553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=2.7e-12  Score=126.18  Aligned_cols=208  Identities=13%  Similarity=0.066  Sum_probs=144.2

Q ss_pred             CCCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCc
Q 015001           82 MISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLF  161 (414)
Q Consensus        82 ~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~  161 (414)
                      ...++.+.+....... .....+      ...++++.|+++.+..  ...++ +..+++|++|++++|.+..   ....+
T Consensus        33 ~~~L~~L~Ls~n~l~~-~~~~~~------~~l~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~---l~~~~   99 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQ-ISAADL------APFTKLELLNLSSNVL--YETLD-LESLSTLRTLDLNNNYVQE---LLVGP   99 (487)
T ss_dssp             GGGCCEEECCSSCCCC-CCGGGG------TTCTTCCEEECTTSCC--EEEEE-CTTCTTCCEEECCSSEEEE---EEECT
T ss_pred             CCCccEEEeeCCcCCC-CCHHHH------hCCCCCCEEEeeCCCC--CCCcc-cccCCCCCEEEecCCcCCC---CCCCC
Confidence            4478887776543221 111111      2236899999876432  22333 7778999999999998763   23448


Q ss_pred             ccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcc--eeecCCCCCCceEEEeecCCCceEee-----eccceeee
Q 015001          162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNAL  234 (414)
Q Consensus       162 ~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L  234 (414)
                      +|++|++++|.++...    ...+++|+.|++++|....  ...+..+++|+.|++++| .+..+..     .+++|++|
T Consensus       100 ~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A          100 SIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             TCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEE
T ss_pred             CcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEE
Confidence            9999999999884322    2357999999999986543  234566799999999998 4444321     46899999


Q ss_pred             EeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCCc
Q 015001          235 AIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKL  311 (414)
Q Consensus       235 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l  311 (414)
                      +++++....+ .....+++|+.|+++++.+.+  ++..+..+++|+.|+++++.. ..++   ..+++|+.|++++|...
T Consensus       175 ~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          175 NLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCBC
T ss_pred             ecCCCccccc-cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCCCCCc
Confidence            9999874333 334568999999999998875  222366789999999999632 2333   35688999999887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.30  E-value=1.5e-12  Score=121.55  Aligned_cols=225  Identities=15%  Similarity=0.117  Sum_probs=115.6

Q ss_pred             CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      +++++|++..+.  ...+ |..+..+++|++|++++|.+...+.. .+++|++|+++++.+..- ....+..+++|++|+
T Consensus        78 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           78 QHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-LPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTCCEEECCSSC--CCEECGGGSTTCTTCCEEECCSSCCCSCCSS-CCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEE
T ss_pred             CCCcEEECCCCc--cCccCHhHhhCcCCCCEEECCCCcCCccCcc-ccccCCEEECCCCccCcc-CHhHhCCCccCCEEE
Confidence            466666665422  1122 34455566666777666655432111 126666676666655311 112245667777777


Q ss_pred             eeccCCcc----eeecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeeccccee-eeccccccCceeEeeccCCch
Q 015001          193 IRSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIED  266 (414)
Q Consensus       193 l~~c~~~~----~l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  266 (414)
                      +++|....    .-.+..+ +|+.|++++| .+..++. ..++|++|+++++...... ..+..+++|+.|+++++.+..
T Consensus       154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             CCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence            76664421    1122232 6666666666 2332322 1256777777766522222 345667777777777776654


Q ss_pred             HHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCCceEee----------ccCCCeeeEEEeCcee--
Q 015001          267 EWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVE----------IETPNLSIFKYHGDLI--  331 (414)
Q Consensus       267 ~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~----------~~~p~L~~l~~~~~~~--  331 (414)
                      .. ...+..+++|+.|+++++. +..++   ..+++|+.|++++|... .+.          ...++|+.+.+.+++.  
T Consensus       232 ~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          232 IE-NGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             CC-TTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             CC-hhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccc
Confidence            21 1234567777777777752 22332   25667777777766432 111          0123455566555543  


Q ss_pred             -----EEeccCCccceEEEEe
Q 015001          332 -----SFSSNALSLSETSLCF  347 (414)
Q Consensus       332 -----~~~~~~~~L~~L~l~~  347 (414)
                           ..+..++.|+.++++.
T Consensus       309 ~~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          309 WEVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             GGSCGGGGTTBCCSTTEEC--
T ss_pred             cccCcccccccchhhhhhccc
Confidence                 2344455566655543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.29  E-value=3.7e-12  Score=116.61  Aligned_cols=163  Identities=19%  Similarity=0.213  Sum_probs=93.2

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|++..+.  ...++ .+..+++|++|++++|.+........+++|+.|+++++.++.  +.. +..+++|++|++
T Consensus        46 ~~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred             CcccEEEccCCC--cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC
Confidence            467777765532  22333 255677777777777776554446677777777777776633  111 566777777777


Q ss_pred             eccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh
Q 015001          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (414)
Q Consensus       194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  271 (414)
                      ++|.....-.+..+++|+.|++++| .+..+.  ..+++|+.|+++++....... +..+++|+.|+++++.+.+  +..
T Consensus       120 ~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~--l~~  195 (291)
T 1h6t_A          120 EHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRA  195 (291)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB--CGG
T ss_pred             CCCcCCCChhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC--Chh
Confidence            7764432223445667777777766 222222  145566666666655222211 5556666666666665544  122


Q ss_pred             hhccCCCCcEEecccc
Q 015001          272 GISKLPLLEYLSMTKC  287 (414)
Q Consensus       272 ~~~~~~~L~~L~l~~c  287 (414)
                       +..+++|+.|+++++
T Consensus       196 -l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          196 -LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             -GTTCTTCSEEEEEEE
T ss_pred             -hccCCCCCEEECcCC
Confidence             455566666666653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.29  E-value=2e-12  Score=117.95  Aligned_cols=192  Identities=15%  Similarity=0.101  Sum_probs=129.8

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCC--CCccccCcccceeEeeEEE-cChHHHHHHHhCCCccc
Q 015001          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVC-ADDQAIASLISGCPLIE  189 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~Le  189 (414)
                      +++++|++....  ...++. .+..+++|++|+++++.+..  +..+..+++|++|+++++. +.... ...+..+++|+
T Consensus        32 ~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred             CCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence            478888776532  223443 46678899999999886643  2456778899999998886 42211 22356788999


Q ss_pred             EEEeeccCCccee--ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeecc
Q 015001          190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL  262 (414)
Q Consensus       190 ~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  262 (414)
                      +|++++|......  .+..+++|+.|++++| .+..+.    ..+++|++|+++++....+.. .+..+++|++|+++++
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            9999888654321  2556788999999888 333333    246889999998876333333 3677889999999988


Q ss_pred             CCchHHHHhhhccCCCCcEEecccccccccc---cccccccceEEeeccCC
Q 015001          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDK  310 (414)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~  310 (414)
                      .+.... ...+..+++|+.|+++++......   ...+++|+.|++++|..
T Consensus       188 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          188 RVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            876532 334667889999999986322211   23577888888887643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.29  E-value=3.1e-12  Score=127.74  Aligned_cols=61  Identities=11%  Similarity=0.040  Sum_probs=29.5

Q ss_pred             ccccccCceeEeeccCCchHH-HHhhhccCCCCcEEecccccccccccc---cccccceEEeeccC
Q 015001          248 VSSCGNLKCLKFDFLPIEDEW-LCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCD  309 (414)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~  309 (414)
                      ++.+++|+.|+++++.+..-. ....+..+++|+.|+++++. +..++.   .+++|+.|++++|.
T Consensus       357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~  421 (549)
T 2z81_A          357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG  421 (549)
T ss_dssp             TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC
T ss_pred             hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC
Confidence            344555566666555554322 12234556666666666642 222221   34455555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.29  E-value=4.2e-12  Score=117.76  Aligned_cols=182  Identities=13%  Similarity=0.082  Sum_probs=93.3

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|+++.+..  ...++ +..+++|++|++++|.+..   ....++|++|+++++.++...    ...+++|++|++
T Consensus        58 ~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l  127 (317)
T 3o53_A           58 TKLELLNLSSNVL--YETLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKKNIYL  127 (317)
T ss_dssp             TTCCEEECTTSCC--EEEEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCCSEEE----ECCCSSCEEEEC
T ss_pred             CcCCEEECCCCcC--Ccchh-hhhcCCCCEEECcCCcccc---ccCCCCcCEEECCCCccCCcC----ccccCCCCEEEC
Confidence            4666666654221  11222 4556666666666665542   223366666666666553221    123566666666


Q ss_pred             eccCCcc--eeecCCCCCCceEEEeecCCCceEee-----eccceeeeEeeeecccceeeeccccccCceeEeeccCCch
Q 015001          194 RSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED  266 (414)
Q Consensus       194 ~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (414)
                      ++|....  ...+..+++|+.|++++| .+..+..     .+++|++|+++++....+ .....+++|++|+++++.+..
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             CSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE
T ss_pred             CCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc
Confidence            6664332  123334566666666666 3333321     246666666666652222 122346666666666666553


Q ss_pred             HHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCC
Q 015001          267 EWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDK  310 (414)
Q Consensus       267 ~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~  310 (414)
                        +...+..+++|+.|+++++. +..++   ..+++|+.|++++|..
T Consensus       206 --l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          206 --MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             --ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCC
T ss_pred             --chhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCc
Confidence              11124455666666666642 22222   2445666666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.28  E-value=8.5e-12  Score=116.31  Aligned_cols=207  Identities=16%  Similarity=0.128  Sum_probs=103.0

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      ++++.|++....  ...++. .+..+++|++|++++|.+...  ..+..+++|++|+++++.++.  +.  ....++|++
T Consensus        52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~--~~~~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTCCE
T ss_pred             CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cC--hhhcccccE
Confidence            356666555422  223333 345566666666666655322  345556666666666665421  10  011256666


Q ss_pred             EEeeccCCccee--ecCCCCCCceEEEeecCCCce--E----eeeccceeeeEeeeecccceeeeccccccCceeEeecc
Q 015001          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKR--V----EIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL  262 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~--~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  262 (414)
                      |++++|......  .+..+++|+.|++++| .+..  +    ...+++|++|+++++....++..+  .++|++|+++++
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n  202 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGN  202 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTS
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCC
Confidence            666665432211  2344566666666665 1211  1    113566666666665522222211  256677777666


Q ss_pred             CCchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee
Q 015001          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI  331 (414)
Q Consensus       263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~  331 (414)
                      .+.... ...+..+++|+.|+++++.....   ....+++|+.|++++|... .++   ...++|+.+.+.++..
T Consensus       203 ~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          203 KITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             CCCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             cCCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence            654421 12345566777777766532111   1224566777777666332 222   2334566666655544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.28  E-value=3.7e-12  Score=126.41  Aligned_cols=171  Identities=16%  Similarity=0.223  Sum_probs=90.1

Q ss_pred             CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      +++++|+++.+.  ...+ |..+..+++|++|++++|.+...+.. .+++|++|+|++|.++...+...+..+++|++|+
T Consensus        45 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~  121 (520)
T 2z7x_B           45 SKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG  121 (520)
T ss_dssp             TTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred             ccccEEecCCCc--cCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence            466666665432  1222 34455566667777766655432222 5666666666666653322222345666666666


Q ss_pred             eeccCCcceeecCCCCCC--ceEEEeecCC---------Cce------------------E---e-eeccceeeeEeeee
Q 015001          193 IRSCEGLESLDLVNLSNL--KEIILVNTSD---------IKR------------------V---E-IKTSNVNALAIHQT  239 (414)
Q Consensus       193 l~~c~~~~~l~i~~l~~L--~~L~l~~~~~---------l~~------------------~---~-~~~p~L~~L~l~~~  239 (414)
                      +++|.... ..+..+++|  +.|++.+|.-         +..                  +   . ..+++|+.++++++
T Consensus       122 L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  200 (520)
T 2z7x_B          122 LSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV  200 (520)
T ss_dssp             EEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred             ecCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence            66664322 233344555  6666666521         000                  0   0 13567777777765


Q ss_pred             c-------ccceeeeccccccCceeEeeccCCchHHHHhhhc--cCCCCcEEeccccc
Q 015001          240 Y-------LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCH  288 (414)
Q Consensus       240 ~-------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~  288 (414)
                      .       .......++.+++|+.|++.++.+.+..+..+..  ..++|+.|++++|.
T Consensus       201 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~  258 (520)
T 2z7x_B          201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK  258 (520)
T ss_dssp             CSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred             ccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence            2       1111114566777777777777766654443322  23567777777653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.28  E-value=7.3e-13  Score=122.18  Aligned_cols=212  Identities=17%  Similarity=0.102  Sum_probs=141.6

Q ss_pred             CCCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCCC----CccccCcccceeEeeEEEcChHHHHHHHhCCCcc
Q 015001          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLI  188 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  188 (414)
                      +++++|++....  ...+|.. +..+++|++|++++|.+...    .....+++|++|+++++.+..  +...+..+++|
T Consensus        28 ~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            478888876533  3356665 45678899999998876422    334567889999998876631  11125678899


Q ss_pred             cEEEeeccCCcce---eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeeccc--ceeeeccccccCceeEe
Q 015001          189 EYLEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKF  259 (414)
Q Consensus       189 e~L~l~~c~~~~~---l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l  259 (414)
                      ++|++++|.....   -.+..+++|+.|++++| .+....    ..+++|++|+++++...  ..+..+..+++|++|++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence            9999888743321   13455788999999887 333222    24688999999887632  24556788899999999


Q ss_pred             eccCCchHHHHhhhccCCCCcEEecccccccc--c-ccccccccceEEeeccCCceEee---ccC-CCeeeEEEeCcee
Q 015001          260 DFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT--S-VRISSPCLKTLILECCDKLIQVE---IET-PNLSIFKYHGDLI  331 (414)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~-l~~~~~~L~~L~l~~c~~l~~~~---~~~-p~L~~l~~~~~~~  331 (414)
                      +++.+.... ...+..+++|+.|+++++....  . ....+++|+.|++++|......+   ... ++|+.+.+.+++.
T Consensus       183 s~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          183 SQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            988876521 2345678899999999863222  1 12357889999999886543221   233 3788888887754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.28  E-value=1.5e-12  Score=120.43  Aligned_cols=195  Identities=16%  Similarity=0.082  Sum_probs=108.6

Q ss_pred             CCCcccEEEecCcccCC--CCcc--ccCcccceeEeeEEEcChH--HHHHHHh-CCCcccEEEeeccCCccee--ecCCC
Q 015001          137 YVESLHVLELSYCKLQQ--PSEN--VKLFSLRKLALREVCADDQ--AIASLIS-GCPLIEYLEIRSCEGLESL--DLVNL  207 (414)
Q Consensus       137 ~~~~L~~L~L~~~~~~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l~~ll~-~~p~Le~L~l~~c~~~~~l--~i~~l  207 (414)
                      .+++|++|++++|.+..  +...  ..+++|++|+|+++.++..  .+..+.. .+++|++|++++|......  .+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            57888888888887753  2332  6788888888888887432  2222111 1378888888877543211  23345


Q ss_pred             CCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCch--HHHHhhhccCCCCcEEecc
Q 015001          208 SNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED--EWLCNGISKLPLLEYLSMT  285 (414)
Q Consensus       208 ~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~  285 (414)
                      ++|+.|++++|.-...+.                .+....+..+++|++|+++++.+..  .....+...+++|+.|+++
T Consensus       173 ~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS  236 (312)
T ss_dssp             SSCCEEECCSCTTCHHHH----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred             CCCCEEECCCCCcCcchH----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence            666666666552110000                0001122556677777777666653  2233344556777777777


Q ss_pred             cccccccc----cccccccceEEeeccCCceEeeccC-CCeeeEEEeCcee---EEeccCCccceEEEEee
Q 015001          286 KCHKLTSV----RISSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDLI---SFSSNALSLSETSLCFS  348 (414)
Q Consensus       286 ~c~~~~~l----~~~~~~L~~L~l~~c~~l~~~~~~~-p~L~~l~~~~~~~---~~~~~~~~L~~L~l~~~  348 (414)
                      ++......    ...+++|+.|++++|... +++... ++|+.|.+.++..   ..+..+++|+.|+++.+
T Consensus       237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTC
T ss_pred             CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCC
Confidence            65322211    123467777777766432 332222 4666666666554   23556777888877665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.27  E-value=3.8e-12  Score=117.61  Aligned_cols=201  Identities=17%  Similarity=0.206  Sum_probs=96.5

Q ss_pred             hhhHHHHHHHHHhCCCeEEEEEecCCccccCCccc--cCCCcccEEEecCcccCCC------CccccCcccceeEeeEEE
Q 015001          101 ASLAGRCLGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVC  172 (414)
Q Consensus       101 ~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~  172 (414)
                      ...+.........+++++|++..+.. ....|..+  ..+++|++|++++|.+...      .....+++|++|+|++|.
T Consensus        78 ~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~  156 (310)
T 4glp_A           78 AQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH  156 (310)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred             HHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence            44555555555556777777765321 12333333  5566777777777665431      112346667777776666


Q ss_pred             cChHHHHHHHhCCCcccEEEeeccCCcce------eecCCCCCCceEEEeecCCCceEe-------eeccceeeeEeeee
Q 015001          173 ADDQAIASLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNTSDIKRVE-------IKTSNVNALAIHQT  239 (414)
Q Consensus       173 ~~~~~l~~ll~~~p~Le~L~l~~c~~~~~------l~i~~l~~L~~L~l~~~~~l~~~~-------~~~p~L~~L~l~~~  239 (414)
                      +.... ...+..+++|++|++++|.....      ..+..+++|+.|++++| .+..+.       ..+++|++|+++++
T Consensus       157 l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          157 SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            52211 11244566666666666653211      11234566666666666 232211       12355566665555


Q ss_pred             cccce-eeecccc---ccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccc-cccccccccceEEeecc
Q 015001          240 YLFPI-EVNVSSC---GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT-SVRISSPCLKTLILECC  308 (414)
Q Consensus       240 ~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~l~~~~~~L~~L~l~~c  308 (414)
                      ..... +..+..+   ++|++|+++++.+..  ++..  -+++|+.|+++++.... .....+++|+.|+++++
T Consensus       235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~--~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          235 SLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKG--LPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSC--CCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred             CCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhh--hcCCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence            42211 2222232   455555555555441  1111  12455555555532111 11234445555555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.26  E-value=5e-11  Score=118.95  Aligned_cols=193  Identities=18%  Similarity=0.113  Sum_probs=133.7

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      +++++|++...... ...|..+..+++|++|++++|.+...  ..+..+++|++|+|+++.++.... ..+..+++|++|
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEE
Confidence            47888888764321 22345677889999999999977532  457889999999999998843332 236789999999


Q ss_pred             EeeccCCcc-e--eecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecc-cceeeeccccccCceeEeeccC
Q 015001          192 EIRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       192 ~l~~c~~~~-~--l~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~  263 (414)
                      ++++|.... .  -.+..+++|+.|++++|..+..+..    .+++|++|+++++.. ...+..++.+++|++|++.++.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999986542 1  2356689999999999854555542    578899999998772 2234457778899999998877


Q ss_pred             CchHHHHhhhccCCCCcEEecccccccc------cccccccccceEEeeccC
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLT------SVRISSPCLKTLILECCD  309 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~l~~~~~~L~~L~l~~c~  309 (414)
                      +... .......+++|+.|+++++....      .+...+++|+.|+++++.
T Consensus       184 ~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          184 SAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             STTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             cccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            6432 22234568889999998863222      112245667777766653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.26  E-value=1.4e-12  Score=118.26  Aligned_cols=192  Identities=15%  Similarity=0.104  Sum_probs=118.5

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      .++++++++....  ...+ ..+..+++|++|++++|.+........+++|++|++++|.++.. ....+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~--i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSD--IKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSC--CCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCC--cccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence            4577777776532  1222 23666788888888888776656677788888888888776321 122356778888888


Q ss_pred             eeccCCccee--ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCc
Q 015001          193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIE  265 (414)
Q Consensus       193 l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  265 (414)
                      +++|......  .+..+++|+.|++++| .+..+.    ..+++|++|+++++....+.. .++.+++|++|+++++.+.
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            8887543221  2455678888888877 333333    245777888877776322222 2466777888888777765


Q ss_pred             hHHHHhhhccCCCCcEEecccccccccccccccccceEEeeccCCceEe
Q 015001          266 DEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQV  314 (414)
Q Consensus       266 ~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~  314 (414)
                      +. ....+..+++|+.|+++++..    ...+++|+.|.++.+...+.+
T Consensus       195 ~~-~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          195 SV-PDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             CC-CTTTTTTCTTCCEEECCSSCB----CCCTTTTHHHHHHHHHTGGGB
T ss_pred             cc-CHHHHhCCcCCCEEEccCCCc----cccCcHHHHHHHHHHhCCCcc
Confidence            42 223356677777777777522    223556666665555443333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.26  E-value=1.1e-11  Score=124.09  Aligned_cols=122  Identities=14%  Similarity=0.048  Sum_probs=68.7

Q ss_pred             eccceeeeEeeeec-ccceeeeccccccCceeEeeccCCchH-HHHhhhccCCCCcEEeccccccccccc----cccccc
Q 015001          227 KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE-WLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCL  300 (414)
Q Consensus       227 ~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~~~~l~----~~~~~L  300 (414)
                      .+++|++|+++++. ....+..++++++|+.|+++++.+..- ..+..+..+++|+.|+++++.....++    ..+++|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            45677777777765 222334566778888888887777642 334446677888888888764322122    244666


Q ss_pred             ceEEeeccCCceEeeccC-CCeeeEEEeCcee----EEeccCCccceEEEEee
Q 015001          301 KTLILECCDKLIQVEIET-PNLSIFKYHGDLI----SFSSNALSLSETSLCFS  348 (414)
Q Consensus       301 ~~L~l~~c~~l~~~~~~~-p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~~  348 (414)
                      +.|++++|...+..+... ++|+.|.+.++..    ..+.++++|+.|+++.+
T Consensus       431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N  483 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN  483 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred             CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence            666666665433333233 3555655555543    11224455555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.26  E-value=6.2e-12  Score=132.02  Aligned_cols=231  Identities=16%  Similarity=0.095  Sum_probs=122.7

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      .++++|++..+... ...|..+..+++|+.|++++|.+...  ..+..+++|++|+|++|.++... ...+..+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEE
T ss_pred             CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEE
Confidence            46666666542211 11234455567777777777765422  44566777777777777663211 1124567777777


Q ss_pred             EeeccCCcc--eeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceee----------------------e
Q 015001          192 EIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV----------------------N  247 (414)
Q Consensus       192 ~l~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~----------------------~  247 (414)
                      ++++|....  .-.+..+++|+.|++++| .+..+.. .|+|+++.++++....++.                      .
T Consensus       344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~  421 (844)
T 3j0a_A          344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF  421 (844)
T ss_dssp             ECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHH
T ss_pred             ECCCCCCCccChhhhcCCCCCCEEECCCC-CCCcccC-CCCcchhccCCCCcccccccccccceeecccCccccCchhhh
Confidence            777764321  112445677777777776 3332222 5566666666554221110                      1


Q ss_pred             ccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccc-----c---cccccccccceEEeeccCCceEe---ec
Q 015001          248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL-----T---SVRISSPCLKTLILECCDKLIQV---EI  316 (414)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~-----~---~l~~~~~~L~~L~l~~c~~l~~~---~~  316 (414)
                      +..+++|+.|+++++.+...........+++|+.|+++++...     .   .....+++|+.|++++|......   ..
T Consensus       422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  501 (844)
T 3j0a_A          422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS  501 (844)
T ss_dssp             HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred             hhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHcc
Confidence            2245555555555555443111112233455666665553211     0   11124466666776665322111   13


Q ss_pred             cCCCeeeEEEeCcee---EEeccCCccceEEEEee
Q 015001          317 ETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS  348 (414)
Q Consensus       317 ~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l~~~  348 (414)
                      ..++|+.|.+.++..   ......++|+.|+++.|
T Consensus       502 ~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N  536 (844)
T 3j0a_A          502 HLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN  536 (844)
T ss_dssp             SCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEE
T ss_pred             chhhhheeECCCCCCCccChhhhhccccEEECCCC
Confidence            457788888888765   11111278999999887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.25  E-value=7.5e-12  Score=117.85  Aligned_cols=212  Identities=19%  Similarity=0.166  Sum_probs=109.6

Q ss_pred             CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCCC--ccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +++++|++..+.  ...+ |..+..+++|++|++++|.+...+  .+..+++|++|+++++.+..-.....+..+++|++
T Consensus        76 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNG--INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCc--cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence            477777775432  2223 334556677777777777665432  25567777777777776632111013456777777


Q ss_pred             EEeeccCCccee---ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeecc
Q 015001          191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL  262 (414)
Q Consensus       191 L~l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  262 (414)
                      |++++|.....+   .+..+++|+.|++++| .+..+.    ..+++|++|+++++....++. .+..+++|+.|+++++
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence            777777544433   3445677777777776 333331    135667777776665222211 1234567777777666


Q ss_pred             CCchHHHHh--hhccCCCCcEEecccccccc----cc---cccccccceEEeeccCCceEee----ccCCCeeeEEEeCc
Q 015001          263 PIEDEWLCN--GISKLPLLEYLSMTKCHKLT----SV---RISSPCLKTLILECCDKLIQVE----IETPNLSIFKYHGD  329 (414)
Q Consensus       263 ~~~~~~~~~--~~~~~~~L~~L~l~~c~~~~----~l---~~~~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~~~  329 (414)
                      .+.......  .....+.++.++++.+....    .+   ...+++|+.|++++|... .++    ...++|+.+.+.++
T Consensus       233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence            654311100  11234445555555431111    11   124455666666555322 222    13345555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.24  E-value=7.9e-12  Score=107.49  Aligned_cols=145  Identities=19%  Similarity=0.235  Sum_probs=77.7

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|++.....  ..+| .+..+++|++|++++|.+...+....+++|++|+++++.++...... +..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEEC
T ss_pred             CCccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEe
Confidence            4677777765322  2444 45566777777777776555455666677777777766654322222 455666666666


Q ss_pred             eccCCcc--eeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh
Q 015001          194 RSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (414)
Q Consensus       194 ~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  271 (414)
                      ++|....  .-.+..+++|+.|++++|..+..+                    + .+..+++|+.|+++++.+.+-  . 
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--------------------~-~l~~l~~L~~L~l~~n~i~~~--~-  175 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--------------------M-PLKTLPELKSLNIQFDGVHDY--R-  175 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--------------------G-GGGGCSSCCEEECTTBCCCCC--T-
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--------------------H-hhcCCCCCCEEECCCCCCcCh--H-
Confidence            6664432  112444556666666655212222                    1 344455555555555554431  1 


Q ss_pred             hhccCCCCcEEeccc
Q 015001          272 GISKLPLLEYLSMTK  286 (414)
Q Consensus       272 ~~~~~~~L~~L~l~~  286 (414)
                      .+..+++|+.|++++
T Consensus       176 ~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             TGGGCSSCCEEEECB
T ss_pred             HhccCCCCCEEEeeC
Confidence            244455555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.23  E-value=9.4e-12  Score=125.08  Aligned_cols=166  Identities=17%  Similarity=0.167  Sum_probs=124.0

Q ss_pred             HhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          112 IESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       112 ~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      ...+|++|++..+.  ...+| .+..+++|+.|+|++|.+........+++|+.|+|++|.+..-  . .+..+++|+.|
T Consensus        41 ~L~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEE
Confidence            34688888876533  23344 4777899999999999887665588899999999999988432  1 36789999999


Q ss_pred             EeeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHH
Q 015001          192 EIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL  269 (414)
Q Consensus       192 ~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  269 (414)
                      +|++|.....-.+..+++|+.|++++| .+..+.  ..+++|+.|+++++....... +..+++|+.|+|++|.+.+-  
T Consensus       115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--  190 (605)
T 1m9s_A          115 SLEHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--  190 (605)
T ss_dssp             ECTTSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred             EecCCCCCCCccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence            999986543324566899999999998 333332  257899999999887333222 78889999999998888762  


Q ss_pred             HhhhccCCCCcEEeccccc
Q 015001          270 CNGISKLPLLEYLSMTKCH  288 (414)
Q Consensus       270 ~~~~~~~~~L~~L~l~~c~  288 (414)
                      . .+..+++|+.|+|+++.
T Consensus       191 ~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          191 R-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             G-GGTTCTTCSEEECCSEE
T ss_pred             h-HHccCCCCCEEEccCCc
Confidence            2 36778999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.22  E-value=2.7e-11  Score=124.15  Aligned_cols=230  Identities=17%  Similarity=0.134  Sum_probs=141.2

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +++++|++....  ...+|. .+..+++|++|++++|.+...  ..+..+++|++|+|+++.++.- ....+..+++|++
T Consensus        25 ~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHNQ--LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSSC--CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred             CCCcEEECCCCC--CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCE
Confidence            578888887632  334554 466788899999988876543  3456788899999988876321 1123567889999


Q ss_pred             EEeeccCCcce--eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeeccccee-ee--ccccccCceeEeec
Q 015001          191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VN--VSSCGNLKCLKFDF  261 (414)
Q Consensus       191 L~l~~c~~~~~--l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~--~~~~~~L~~L~l~~  261 (414)
                      |++++|.....  -.+..+++|+.|++++| .+....    ..+++|++|+++++...... ..  ...+++|++|++++
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            99988854321  13556788999998888 222221    25788888888887622221 11  23457888898887


Q ss_pred             cCCchHHHHhhhccC---------------------------CCCcEEecccccccccccc---cc--cccceEEeeccC
Q 015001          262 LPIEDEWLCNGISKL---------------------------PLLEYLSMTKCHKLTSVRI---SS--PCLKTLILECCD  309 (414)
Q Consensus       262 ~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~c~~~~~l~~---~~--~~L~~L~l~~c~  309 (414)
                      +.+.... ...+..+                           ++|+.|+++++......+.   .+  ++|+.|++++|.
T Consensus       181 n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~  259 (680)
T 1ziw_A          181 NQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN  259 (680)
T ss_dssp             CCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred             CcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence            7654311 1112222                           4566666666422221111   22  348888888775


Q ss_pred             CceEe---eccCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001          310 KLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS  348 (414)
Q Consensus       310 ~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~  348 (414)
                      .....   ....++|+.+.+.++..     ..+.++++|+.|+++.+
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence            43222   12446788888877655     34567788888888643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.22  E-value=6.5e-12  Score=118.74  Aligned_cols=96  Identities=11%  Similarity=-0.009  Sum_probs=46.7

Q ss_pred             cCceeEeeccCCch---HHHHhhhccCC-CCcEEecccccccc----cccc---c-ccccceEEeeccCCceE-------
Q 015001          253 NLKCLKFDFLPIED---EWLCNGISKLP-LLEYLSMTKCHKLT----SVRI---S-SPCLKTLILECCDKLIQ-------  313 (414)
Q Consensus       253 ~L~~L~l~~~~~~~---~~~~~~~~~~~-~L~~L~l~~c~~~~----~l~~---~-~~~L~~L~l~~c~~l~~-------  313 (414)
                      +|++|+++++.+.+   ..+...+..++ +|+.|+++++....    .+..   . .++|++|++++|..-..       
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            66666666655543   22333344443 66666666642111    0111   1 24566666666543211       


Q ss_pred             eeccCCCeeeEEEeCcee------------EEeccCCccceEEEEee
Q 015001          314 VEIETPNLSIFKYHGDLI------------SFSSNALSLSETSLCFS  348 (414)
Q Consensus       314 ~~~~~p~L~~l~~~~~~~------------~~~~~~~~L~~L~l~~~  348 (414)
                      .....++|+.+.+.++..            ..+.+.++|+.|+++.+
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence            012234566666655541            23455667777777766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.21  E-value=1.5e-11  Score=111.45  Aligned_cols=171  Identities=17%  Similarity=0.120  Sum_probs=117.6

Q ss_pred             ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCce
Q 015001          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE  212 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~  212 (414)
                      ...+++|++|+++++.+........+++|++|+++++.+..-  . .+..+++|++|++++|......  .+..+++|+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            344688999999999887767788899999999999988432  1 3678999999999998544222  2456789999


Q ss_pred             EEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          213 IILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       213 L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      |++++| .+..+.    ..+++|++|+++++....+.. .++.+++|+.|+++++.+... ....+..+++|+.|+++++
T Consensus       114 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          114 LVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             EECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCC
Confidence            999988 343333    246788888888776332222 256778888888887776542 2233466778888888875


Q ss_pred             cccccc---cccccccceEEeeccCC
Q 015001          288 HKLTSV---RISSPCLKTLILECCDK  310 (414)
Q Consensus       288 ~~~~~l---~~~~~~L~~L~l~~c~~  310 (414)
                      ......   ...+++|+.|++++|..
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCc
Confidence            322211   23566777777776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.21  E-value=2.1e-11  Score=108.18  Aligned_cols=166  Identities=19%  Similarity=0.146  Sum_probs=83.4

Q ss_pred             CcccEEEecCcccCCC--CccccCcccceeEeeEEE-cChHHHHHHHhCCCcccEEEeeccCCcceee---cCCCCCCce
Q 015001          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKE  212 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~---i~~l~~L~~  212 (414)
                      .+|++|+++++.+...  ..+..+++|++|+++++. ++.-. ...+..+++|++|++++|..+..+.   +..+++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            3667777777655422  235566667777776664 32111 1123566667777776633333332   334566666


Q ss_pred             EEEeecCCCceEe--eecccee---eeEeeee-cccceee-eccccccCc-eeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001          213 IILVNTSDIKRVE--IKTSNVN---ALAIHQT-YLFPIEV-NVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (414)
Q Consensus       213 L~l~~~~~l~~~~--~~~p~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  284 (414)
                      |++++| .+..++  ...++|+   +|+++++ ....++. .+.++++|+ +|+++++.+..- ....+.. ++|+.|++
T Consensus       110 L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L  186 (239)
T 2xwt_C          110 LGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYL  186 (239)
T ss_dssp             EEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEEC
T ss_pred             EeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEc
Confidence            666666 222222  1344444   6666665 3222221 255566666 666666655421 1111222 56666666


Q ss_pred             cccccccccc----ccc-cccceEEeecc
Q 015001          285 TKCHKLTSVR----ISS-PCLKTLILECC  308 (414)
Q Consensus       285 ~~c~~~~~l~----~~~-~~L~~L~l~~c  308 (414)
                      +++..+..++    ..+ ++|+.|+++++
T Consensus       187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             TTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             CCCCCcccCCHHHhhccccCCcEEECCCC
Confidence            6653333332    134 56666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.20  E-value=2.7e-11  Score=107.45  Aligned_cols=191  Identities=13%  Similarity=0.112  Sum_probs=127.2

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcc-cCCC--CccccCcccceeEeeE-EEcChHHHHHHHhCCCcc
Q 015001          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCK-LQQP--SENVKLFSLRKLALRE-VCADDQAIASLISGCPLI  188 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~-~~~~--~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~~p~L  188 (414)
                      .++++|++....  ...+|. .+..+++|++|++++|. +...  ..+..+++|++|++++ +.++.-. ...+..+++|
T Consensus        31 ~~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred             CcccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence            378888887632  334554 45678899999999986 5322  3567889999999988 5553211 1235678999


Q ss_pred             cEEEeeccCCcceeecCCCCCCc---eEEEeecCCCceEee----ecccee-eeEeeeecccceeeeccccccCceeEee
Q 015001          189 EYLEIRSCEGLESLDLVNLSNLK---EIILVNTSDIKRVEI----KTSNVN-ALAIHQTYLFPIEVNVSSCGNLKCLKFD  260 (414)
Q Consensus       189 e~L~l~~c~~~~~l~i~~l~~L~---~L~l~~~~~l~~~~~----~~p~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~  260 (414)
                      ++|++++|....--.+..+++|+   .|+++++..+..+..    .+++|+ +|+++++....++......++|++|+++
T Consensus       108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            99999988543311244566777   899988755666553    467888 9999887633333332233789999998


Q ss_pred             ccC-CchHHHHhhhccC-CCCcEEecccccccccccc-cccccceEEeeccC
Q 015001          261 FLP-IEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCD  309 (414)
Q Consensus       261 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~l~~-~~~~L~~L~l~~c~  309 (414)
                      ++. +..- ....+..+ ++|+.|+++++. +..++. .+++|+.|.+.++.
T Consensus       188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC-
T ss_pred             CCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCcc
Confidence            884 6531 12335667 899999999853 334443 67888888887764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.20  E-value=3.1e-11  Score=109.20  Aligned_cols=79  Identities=22%  Similarity=0.115  Sum_probs=39.9

Q ss_pred             CcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~  214 (414)
                      +++++|+++++.+...  ..+..+++|++|+++++.++.- ...++..+++|++|++++|......  .+..+++|+.|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            4566777776655433  2355666666666666655211 1122345666666666655332110  122345555555


Q ss_pred             Eeec
Q 015001          215 LVNT  218 (414)
Q Consensus       215 l~~~  218 (414)
                      ++++
T Consensus       116 l~~n  119 (270)
T 2o6q_A          116 LDRN  119 (270)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.20  E-value=3.9e-11  Score=120.24  Aligned_cols=99  Identities=15%  Similarity=0.101  Sum_probs=63.9

Q ss_pred             cccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccc--ccc---cccccccceEEeeccCCceEee----ccCC
Q 015001          249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL--TSV---RISSPCLKTLILECCDKLIQVE----IETP  319 (414)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~--~~l---~~~~~~L~~L~l~~c~~l~~~~----~~~p  319 (414)
                      ..+++|++|+++++.+.+. .+..+..+++|+.|+++++...  ..+   ...+++|+.|++++|.....++    ...+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            5667788888887777652 2233567788888888875322  122   2366788888888876543232    2346


Q ss_pred             CeeeEEEeCcee--EEeccC-CccceEEEEee
Q 015001          320 NLSIFKYHGDLI--SFSSNA-LSLSETSLCFS  348 (414)
Q Consensus       320 ~L~~l~~~~~~~--~~~~~~-~~L~~L~l~~~  348 (414)
                      +|+.+.+.++..  ...... ++|+.|+++.+
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N  460 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN  460 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCCC
Confidence            788888877765  222233 68999998877

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.20  E-value=3.9e-12  Score=117.55  Aligned_cols=105  Identities=16%  Similarity=0.097  Sum_probs=65.5

Q ss_pred             CCCeEEEEEecCCccccCCc--cccCCCcccEEEecCcccCCC--Ccc--ccCcccceeEeeEEEcChHH--H-HHHHhC
Q 015001          114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQA--I-ASLISG  184 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~--~~~--~~l~~L~~L~L~~~~~~~~~--l-~~ll~~  184 (414)
                      ..++.+.+.........+..  .....++|++|++++|.+...  ...  ..+++|++|+|++|.++...  + ..-+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            36777777653221111111  122346799999999977532  333  78899999999999884311  1 112347


Q ss_pred             CCcccEEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001          185 CPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT  218 (414)
Q Consensus       185 ~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~  218 (414)
                      +++|++|++++|......  .+..+++|+.|++++|
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  179 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN  179 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence            889999999888653221  3445677777777776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.20  E-value=5.6e-12  Score=120.23  Aligned_cols=197  Identities=15%  Similarity=0.116  Sum_probs=131.8

Q ss_pred             hCCCeEEEEEecCC--ccccCCccc-------cCCCcccEEEecCcccCCC------CccccCcccceeEeeEEEcChHH
Q 015001          113 ESEVKELVLVHWRS--ERRNLPEII-------FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQA  177 (414)
Q Consensus       113 ~~~l~~L~l~~~~~--~~~~lp~~~-------~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~  177 (414)
                      .+++++|+++.+..  -...+|..+       ..+++|++|++++|.+...      .....+++|++|+|++|.+++..
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            35888888876421  112344333       5678899999998877652      24567888999999988875333


Q ss_pred             ---HHHHHhCC---------CcccEEEeeccCCc-cee-----ecCCCCCCceEEEeecCCCce---------Eeeeccc
Q 015001          178 ---IASLISGC---------PLIEYLEIRSCEGL-ESL-----DLVNLSNLKEIILVNTSDIKR---------VEIKTSN  230 (414)
Q Consensus       178 ---l~~ll~~~---------p~Le~L~l~~c~~~-~~l-----~i~~l~~L~~L~l~~~~~l~~---------~~~~~p~  230 (414)
                         +...+..+         ++|++|++++|... ..+     .+..+++|+.|++++| .+..         ....+++
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCC
Confidence               33334444         89999999888653 111     2334688999999888 3331         1125688


Q ss_pred             eeeeEeeeecc-----cceeeeccccccCceeEeeccCCchHHH---Hhhh--ccCCCCcEEecccccccc----cccc-
Q 015001          231 VNALAIHQTYL-----FPIEVNVSSCGNLKCLKFDFLPIEDEWL---CNGI--SKLPLLEYLSMTKCHKLT----SVRI-  295 (414)
Q Consensus       231 L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~--~~~~~L~~L~l~~c~~~~----~l~~-  295 (414)
                      |++|+++++..     ..++..+..+++|++|++++|.+.+...   ...+  ..+++|+.|++++|....    .++. 
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            99999988773     2234456788999999999998877533   3334  238999999999974333    2332 


Q ss_pred             ---cccccceEEeeccCC
Q 015001          296 ---SSPCLKTLILECCDK  310 (414)
Q Consensus       296 ---~~~~L~~L~l~~c~~  310 (414)
                         .+++|++|++++|..
T Consensus       298 l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          298 IDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHCTTCCEEECTTSBS
T ss_pred             HHhcCCCceEEEccCCcC
Confidence               468899998888754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.19  E-value=2.1e-11  Score=125.01  Aligned_cols=52  Identities=15%  Similarity=0.051  Sum_probs=31.7

Q ss_pred             cccccceEEeeccCCceEe----eccCCCeeeEEEeCcee-------------EEeccCCccceEEEEee
Q 015001          296 SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-------------SFSSNALSLSETSLCFS  348 (414)
Q Consensus       296 ~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~-------------~~~~~~~~L~~L~l~~~  348 (414)
                      .+++|+.|++++|... .+    ....++|+.+.+.++..             ..+.++++|+.|+++.+
T Consensus       478 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence            4566777777665432 22    12345677777776654             12566788888888766

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.18  E-value=4.7e-11  Score=109.19  Aligned_cols=166  Identities=17%  Similarity=0.163  Sum_probs=129.2

Q ss_pred             cCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEE
Q 015001          136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (414)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l  215 (414)
                      ..+++|++|++++|.+...+....+++|++|+++++.++....   +..+++|++|++++|.....-.+..+++|+.|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence            3468899999999988766678889999999999998843222   7899999999999986543224667899999999


Q ss_pred             eecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc
Q 015001          216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV  293 (414)
Q Consensus       216 ~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l  293 (414)
                      ++| .+..+.  ..+++|++|+++++....+ ..+..+++|+.|+++++.+.+.  .. +..+++|+.|+++++. +..+
T Consensus       120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~-i~~l  193 (291)
T 1h6t_A          120 EHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDL  193 (291)
T ss_dssp             TTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBC
T ss_pred             CCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCc-CCCC
Confidence            999 344333  2578999999999874433 4678899999999999988763  22 7789999999999962 2222


Q ss_pred             --cccccccceEEeeccCC
Q 015001          294 --RISSPCLKTLILECCDK  310 (414)
Q Consensus       294 --~~~~~~L~~L~l~~c~~  310 (414)
                        ...+++|+.|++++|..
T Consensus       194 ~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          194 RALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             GGGTTCTTCSEEEEEEEEE
T ss_pred             hhhccCCCCCEEECcCCcc
Confidence              23778999999998754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.18  E-value=1.3e-11  Score=114.18  Aligned_cols=194  Identities=16%  Similarity=0.183  Sum_probs=127.4

Q ss_pred             HHHHHhCCCeEEEEEecCCccccCCccc--cCCCcccEEEecCcccCCC-CccccC-----cccceeEeeEEEcChHHHH
Q 015001          108 LGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP-SENVKL-----FSLRKLALREVCADDQAIA  179 (414)
Q Consensus       108 l~~~~~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~-~~~~~l-----~~L~~L~L~~~~~~~~~l~  179 (414)
                      +.....+++++|++..+.- ...+|..+  ..+++|++|++++|.+... .....+     ++|++|+++++.++.... 
T Consensus        89 ~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-  166 (312)
T 1wwl_A           89 LRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC-  166 (312)
T ss_dssp             HHHHTTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-
T ss_pred             HHhcCcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-
Confidence            3333457999999998432 22456655  6789999999999987543 333444     899999999998843222 


Q ss_pred             HHHhCCCcccEEEeeccCCcce------eecCCCCCCceEEEeecCCCce---Ee----eeccceeeeEeeeeccccee-
Q 015001          180 SLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNTSDIKR---VE----IKTSNVNALAIHQTYLFPIE-  245 (414)
Q Consensus       180 ~ll~~~p~Le~L~l~~c~~~~~------l~i~~l~~L~~L~l~~~~~l~~---~~----~~~p~L~~L~l~~~~~~~~~-  245 (414)
                      ..+..+++|++|++++|.....      +....+++|+.|++++| .+..   +.    ..+++|++|+++++...... 
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence            2367899999999999975432      12266899999999998 4432   21    13478888888877622211 


Q ss_pred             -eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc--cccccccceEEeeccC
Q 015001          246 -VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV--RISSPCLKTLILECCD  309 (414)
Q Consensus       246 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l--~~~~~~L~~L~l~~c~  309 (414)
                       ..+..+++|+.|+++++.+..  ++..+.  ++|+.|+++++. +..+  ...+++|+.|+++++.
T Consensus       246 ~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLSFTGLKQ--VPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CSCCCCCTTCCEEECTTSCCSS--CCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTCT
T ss_pred             hhhhhhcCCCCEEECCCCccCh--hhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCCC
Confidence             234456788888888877662  222122  677888887752 1211  2356677777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.17  E-value=3e-11  Score=121.41  Aligned_cols=163  Identities=18%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             CCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEee
Q 015001          138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN  217 (414)
Q Consensus       138 ~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~  217 (414)
                      +++|+.|++++|.+...+.+..+++|+.|+|++|.+.....   +..+++|+.|.|++|.....-.+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence            45566666666655544455566666666666665522111   456666666666665433211344456666666666


Q ss_pred             cCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc-
Q 015001          218 TSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR-  294 (414)
Q Consensus       218 ~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~-  294 (414)
                      | .+..+.  ..+++|+.|+++++....+ ..+..+++|+.|+|++|.+.+.  .. +..+++|+.|+|++|. +..+. 
T Consensus       119 N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~l~~  192 (605)
T 1m9s_A          119 N-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDLRA  192 (605)
T ss_dssp             S-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBCGG
T ss_pred             C-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCC-CCCChH
Confidence            6 222222  1456666666666552222 3455566666666666655442  11 4556666666666642 11121 


Q ss_pred             -ccccccceEEeeccC
Q 015001          295 -ISSPCLKTLILECCD  309 (414)
Q Consensus       295 -~~~~~L~~L~l~~c~  309 (414)
                       ..+++|+.|++++|.
T Consensus       193 l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GTTCTTCSEEECCSEE
T ss_pred             HccCCCCCEEEccCCc
Confidence             245566666666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.16  E-value=2.4e-11  Score=110.25  Aligned_cols=201  Identities=17%  Similarity=0.152  Sum_probs=111.7

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~  203 (414)
                      ...+|..+.  ++|++|+++++.+...  ..+..+++|++|+++++.++... ...+..+++|++|++++|......  .
T Consensus        19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence            345565442  5788899988876432  35677888888888888763211 112567888888888887543211  2


Q ss_pred             cCCCCCCceEEEeec--CCCceEe-eeccceeeeEeeeecccc--eeeeccccccCceeEeeccCCchH---HHHhhhcc
Q 015001          204 LVNLSNLKEIILVNT--SDIKRVE-IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDE---WLCNGISK  275 (414)
Q Consensus       204 i~~l~~L~~L~l~~~--~~l~~~~-~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~  275 (414)
                      +..+++|+.|++++|  ..+.... ..+++|++|+++++....  ++..+..+++|++|+++++.+...   .+.. +..
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~  174 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ  174 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence            455678888888777  1111111 145667777776665222  334566667777777766665431   1111 122


Q ss_pred             CCCCc-EEeccccccccccc---ccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEeec
Q 015001          276 LPLLE-YLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS  349 (414)
Q Consensus       276 ~~~L~-~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~  349 (414)
                      ++.|. .|+++++.. ..+.   ....+|+.|++++|... .++               ...+.++++|++|+++.++
T Consensus       175 L~~l~l~L~ls~n~l-~~~~~~~~~~~~L~~L~L~~n~l~-~~~---------------~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          175 MPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLK-SVP---------------DGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CTTCCEEEECCSSCC-CEECTTSSCSCCEEEEECCSSCCS-CCC---------------TTTTTTCCSCCEEECCSSC
T ss_pred             ccccceeeecCCCcc-cccCccccCCCcccEEECCCCcee-ecC---------------HhHhcccccccEEEccCCc
Confidence            22222 555555321 1111   12235566665554311 110               0234667888888888774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.16  E-value=1.7e-10  Score=112.25  Aligned_cols=76  Identities=12%  Similarity=0.127  Sum_probs=46.3

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|++..+.-  ..+| .+..+++|++|++++|.+...+  ...++|++|+++++.+..  +.. +..+++|++|++
T Consensus       131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEEC
Confidence            4788888876432  2466 4677788888888887665321  123467777777766532  111 456666666666


Q ss_pred             eccC
Q 015001          194 RSCE  197 (414)
Q Consensus       194 ~~c~  197 (414)
                      ++|.
T Consensus       203 ~~N~  206 (454)
T 1jl5_A          203 DNNS  206 (454)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            6654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.15  E-value=2.2e-11  Score=113.55  Aligned_cols=225  Identities=17%  Similarity=0.071  Sum_probs=110.7

Q ss_pred             CCCeEEEEEecCCccccCC-ccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      ++++.|++....  ...++ ..+..+++|++|++++|.+...  ..+..+++|++|+++++.++.  +..  ...++|++
T Consensus        54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE  127 (332)
T ss_dssp             TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred             CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence            355555554422  11222 2344556666666666554321  334555666666666555421  100  11255666


Q ss_pred             EEeeccCCccee--ecCCCCCCceEEEeecCCCce-----EeeeccceeeeEeeeecccceeeeccccccCceeEeeccC
Q 015001          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKR-----VEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~-----~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  263 (414)
                      |++++|......  .+..+++|+.|+++++ .+..     -.....+|++|+++++....++..+  .++|++|+++++.
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~  204 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNK  204 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSC
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCCc
Confidence            666655432111  1344566666666655 2211     0111125666666655522222221  2577777777766


Q ss_pred             CchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----E
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----S  332 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~  332 (414)
                      +.... ...+..+++|+.|+++++.....   ....+++|+.|++++|... .++   ...++|+.+.+.++..     .
T Consensus       205 i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          205 IQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             CCCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             CCccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence            65421 12345667777777777522211   1235677777777776432 332   2345677777766654     1


Q ss_pred             Eecc------CCccceEEEEeec
Q 015001          333 FSSN------ALSLSETSLCFSS  349 (414)
Q Consensus       333 ~~~~------~~~L~~L~l~~~~  349 (414)
                      .+..      .++|+.+++..++
T Consensus       283 ~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          283 DFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             SSSCSSCCSSSCCBSEEECCSSS
T ss_pred             HccccccccccccccceEeecCc
Confidence            1111      3556777776663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.15  E-value=3.6e-11  Score=103.29  Aligned_cols=147  Identities=17%  Similarity=0.157  Sum_probs=93.9

Q ss_pred             cCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcc--eeecCCCCCCceE
Q 015001          136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEI  213 (414)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~--~l~i~~l~~L~~L  213 (414)
                      ..+++|++|+++++.+...+....+++|++|++++|.+..-.   .+..+++|++|++++|....  .-.+..+      
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l------  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGL------  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTC------
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhcCC------
Confidence            345778888888877765445667777777777777552211   24566777777777664332  1123334      


Q ss_pred             EEeecCCCceEeeeccceeeeEeeeecc-cceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEecccccccc
Q 015001          214 ILVNTSDIKRVEIKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (414)
Q Consensus       214 ~l~~~~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~  291 (414)
                                     ++|++|+++++.. ...+..+..+++|++|+++++. +.+-  . .+..+++|+.|++++|....
T Consensus       112 ---------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          112 ---------------TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             ---------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCC
T ss_pred             ---------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcC
Confidence                           4455555554441 1123456788999999999887 6552  2 47889999999999974222


Q ss_pred             c-ccccccccceEEeeccC
Q 015001          292 S-VRISSPCLKTLILECCD  309 (414)
Q Consensus       292 ~-l~~~~~~L~~L~l~~c~  309 (414)
                      - ....+++|++|+++++.
T Consensus       174 ~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          174 YRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CTTGGGCSSCCEEEECBC-
T ss_pred             hHHhccCCCCCEEEeeCcc
Confidence            1 23378999999998864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.13  E-value=7.8e-11  Score=107.69  Aligned_cols=170  Identities=16%  Similarity=0.071  Sum_probs=100.2

Q ss_pred             ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~  214 (414)
                      +..++++++++++++.+...+. .-.++++.|+|+++.++.... ..+..+++|++|++++|.....-....+++|+.|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence            4455677777777776643221 123577777777776632211 23566778888888777543222234567777777


Q ss_pred             EeecCCCceEe---eeccceeeeEeeeeccccee-eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccc
Q 015001          215 LVNTSDIKRVE---IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL  290 (414)
Q Consensus       215 l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  290 (414)
                      ++++ .+..++   ...++|++|+++++....++ ..+.++++|++|+++++.+..- ....+..+++|+.|+++++. +
T Consensus        84 Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l  160 (290)
T 1p9a_G           84 LSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-L  160 (290)
T ss_dssp             CCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-C
T ss_pred             CCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-C
Confidence            7777 333332   24567777777776633332 3466777888888877776531 22234566777888777752 2


Q ss_pred             cccc----ccccccceEEeeccC
Q 015001          291 TSVR----ISSPCLKTLILECCD  309 (414)
Q Consensus       291 ~~l~----~~~~~L~~L~l~~c~  309 (414)
                      ..++    ..+++|+.|++++|.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHHHhcCcCCCCEEECCCCc
Confidence            2222    245677777776653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.09  E-value=9.2e-11  Score=106.34  Aligned_cols=126  Identities=22%  Similarity=0.211  Sum_probs=90.7

Q ss_pred             cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEe----eeccceeee
Q 015001          161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNAL  234 (414)
Q Consensus       161 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L  234 (414)
                      ++|++|+++++.++.... ..+..+++|++|++++|......  .+..+++|+.|++++| .+..+.    ..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEE
Confidence            579999999988743222 13578999999999998543211  3556799999999988 455444    256889999


Q ss_pred             Eeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc
Q 015001          235 AIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (414)
Q Consensus       235 ~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  288 (414)
                      +++++..... ...++.+++|++|+++++.+....++..+..+++|+.|+++++.
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            9988762222 22477888999999988887653344556778899999998863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=4.1e-10  Score=113.38  Aligned_cols=212  Identities=15%  Similarity=0.037  Sum_probs=145.8

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      ..+++.+++....  ...+|..+.  ++|++|++++|.+...+.  .+++|++|+|++|.++.  +.   ..+++|++|+
T Consensus        39 ~~~l~~L~ls~n~--L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~  107 (622)
T 3g06_A           39 NNGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELS  107 (622)
T ss_dssp             HHCCCEEECCSSC--CSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCCEEE
T ss_pred             CCCCcEEEecCCC--cCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEE
Confidence            3478999887643  337777665  899999999998864333  68999999999998742  11   2789999999


Q ss_pred             eeccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhh
Q 015001          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (414)
Q Consensus       193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  272 (414)
                      +++|.... +.. .+++|+.|++++| .+..++...++|++|+++++....++   ..+++|+.|++.++.+..     +
T Consensus       108 Ls~N~l~~-l~~-~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~-----l  176 (622)
T 3g06_A          108 IFSNPLTH-LPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTS-----L  176 (622)
T ss_dssp             ECSCCCCC-CCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-----C
T ss_pred             CcCCcCCC-CCC-CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCC-----C
Confidence            99985432 222 4689999999998 56666666799999999998733322   346799999999988765     2


Q ss_pred             hccCCCCcEEecccccccccccccccccceEEeeccCCceEeeccCCCeeeEEEeCcee-EEeccCCccceEEEEee
Q 015001          273 ISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFS  348 (414)
Q Consensus       273 ~~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~-~~~~~~~~L~~L~l~~~  348 (414)
                      ...+++|+.|+++++. +..++...++|+.|.+++|.. ..++...++|+.|.+.++.. ..-..+++|++|+++.+
T Consensus       177 ~~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l-~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          177 PMLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRL-TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN  251 (622)
T ss_dssp             CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcc-cccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC
Confidence            2567999999999963 444555567777777776642 23333345566666655543 11123344444444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.08  E-value=1.5e-10  Score=104.60  Aligned_cols=168  Identities=17%  Similarity=0.152  Sum_probs=111.6

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +++++|++....  ...++. .+..+++|++|+++++.+...  ..+..+++|++|+++++.+..-. ...+..+++|++
T Consensus        37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred             CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence            478888887632  334554 566789999999999987543  33577999999999998874221 133578999999


Q ss_pred             EEeeccCCccee--ecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccceee-eccccccCceeEeeccC
Q 015001          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  263 (414)
                      |++++|......  .+..+++|+.|++++| .+..+..    .+++|++|+++++....+.. .+..+++|+.|+++++.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            999988643221  2456789999999888 3433332    45777777777765322222 35567777777777776


Q ss_pred             CchHHHHhhhccCCCCcEEeccc
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~  286 (414)
                      +..- ....+..+++|+.|++++
T Consensus       193 l~~~-~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          193 LKRV-PEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CSCC-CTTTTTTCTTCCEEECCS
T ss_pred             CCcC-CHHHhccccCCCEEEecC
Confidence            5531 122345567777777766

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.05  E-value=1.6e-10  Score=104.03  Aligned_cols=144  Identities=15%  Similarity=0.191  Sum_probs=86.8

Q ss_pred             ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~  214 (414)
                      +..+++|++|++++|.+...+....+++|+.|+|++|.++.-..   +..+++|++|++++|....--.+.. ++|+.|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence            44567788888888877655566777888888888877733221   6677888888888775432112222 6677777


Q ss_pred             EeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          215 LVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       215 l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      +++| .+..+.  ..+++|+.|+++++....+. .+..+++|+.|+++++.+.+.   ..+..+++|+.|+++++
T Consensus       113 L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          113 LDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred             ccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence            7766 333222  13556666666665522222 455566666666666665543   33555666666666663

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.03  E-value=2.3e-10  Score=104.50  Aligned_cols=185  Identities=14%  Similarity=0.070  Sum_probs=118.4

Q ss_pred             CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      +++++++..  .....+|..+.  ++++.|+++++.+...  ..+..+++|+.|+|+++.++.-..   ...+++|++|+
T Consensus        11 ~l~~l~~~~--~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~   83 (290)
T 1p9a_G           11 SHLEVNCDK--RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD   83 (290)
T ss_dssp             TCCEEECTT--SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred             CccEEECCC--CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence            556665543  23345665443  6788888888876432  456778888888888877632111   15788888888


Q ss_pred             eeccCCcce-eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCch
Q 015001          193 IRSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED  266 (414)
Q Consensus       193 l~~c~~~~~-l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  266 (414)
                      +++|....- ..+..+++|+.|+++++ .+..+.    ..+++|++|+++++....++. .+..+++|+.|+++++.+..
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            888754311 12445788888888887 444333    246788888888876333222 35677888899988887763


Q ss_pred             HHHHhhhccCCCCcEEecccccccccccc---cccccceEEeeccC
Q 015001          267 EWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCD  309 (414)
Q Consensus       267 ~~~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~  309 (414)
                       .....+..+++|+.|+++++. +..++.   ..++|++|.+++++
T Consensus       163 -l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          163 -LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             -CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             -cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence             122335667888899888852 223332   45577888877654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.00  E-value=6.3e-10  Score=110.72  Aligned_cols=178  Identities=16%  Similarity=0.124  Sum_probs=122.1

Q ss_pred             HhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          112 IESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       112 ~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      ...+++.|++....  ...+|..++  ++|++|++++|.+...+  ..+++|++|+|++|.++.  +.. +.  .+|++|
T Consensus        57 ~~~~L~~L~Ls~n~--L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L  125 (571)
T 3cvr_A           57 LINQFSELQLNRLN--LSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHL  125 (571)
T ss_dssp             HHTTCSEEECCSSC--CSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEE
T ss_pred             ccCCccEEEeCCCC--CCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEE
Confidence            34589999987643  234777553  78999999999887434  668999999999988743  222 22  289999


Q ss_pred             EeeccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh
Q 015001          192 EIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (414)
Q Consensus       192 ~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  271 (414)
                      ++++|.... +.- .+++|+.|++++| .+..++..+++|++|+++++....++. +.  ++|+.|++++|.+..  ++.
T Consensus       126 ~Ls~N~l~~-lp~-~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~  197 (571)
T 3cvr_A          126 DVDNNQLTM-LPE-LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA  197 (571)
T ss_dssp             ECCSSCCSC-CCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC
T ss_pred             ECCCCcCCC-CCC-cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh
Confidence            999886433 322 5688999999988 444444467889999999887444444 44  899999999888763  222


Q ss_pred             hhccCCCC-------cEEeccccccccccc---ccccccceEEeeccCCce
Q 015001          272 GISKLPLL-------EYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI  312 (414)
Q Consensus       272 ~~~~~~~L-------~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~  312 (414)
                       +.  .+|       +.|+++++. +..++   ..+++|+.|++++|...+
T Consensus       198 -~~--~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          198 -VP--VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             -CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             -HH--HhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCC
Confidence             22  155       888888852 22333   257788888888886543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.99  E-value=1.4e-10  Score=104.41  Aligned_cols=165  Identities=12%  Similarity=0.043  Sum_probs=122.0

Q ss_pred             CCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEee
Q 015001          138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN  217 (414)
Q Consensus       138 ~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~  217 (414)
                      +.+++.++++.+.+........+++|+.|+++++.++.-.   -+..+++|++|++++|.......+..+++|+.|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence            3556667777776654445778999999999999874322   3678999999999998654322377789999999999


Q ss_pred             cCCCceEe-eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccc-cccc
Q 015001          218 TSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT-SVRI  295 (414)
Q Consensus       218 ~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~l~~  295 (414)
                      | .+..+. ...++|++|+++++....+ ..+..+++|+.|+++++.+.+-  . .+..+++|+.|+++++.... ....
T Consensus        95 N-~l~~l~~~~~~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i~~~~~l~  169 (263)
T 1xeu_A           95 N-RLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEITNTGGLT  169 (263)
T ss_dssp             S-CCSCCTTCCCSSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCCCBCTTST
T ss_pred             C-ccCCcCccccCcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcCcchHHhc
Confidence            9 333222 1128999999999884333 2578899999999999998763  2 47789999999999963222 2223


Q ss_pred             cccccceEEeeccCC
Q 015001          296 SSPCLKTLILECCDK  310 (414)
Q Consensus       296 ~~~~L~~L~l~~c~~  310 (414)
                      .+++|+.|++++|..
T Consensus       170 ~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TCCCCCEEEEEEEEE
T ss_pred             cCCCCCEEeCCCCcc
Confidence            678999999988754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.99  E-value=9.4e-10  Score=103.30  Aligned_cols=40  Identities=15%  Similarity=0.108  Sum_probs=17.8

Q ss_pred             ccCCCCcEEecccccccccccc-cccccceEEeeccCCceEe
Q 015001          274 SKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV  314 (414)
Q Consensus       274 ~~~~~L~~L~l~~c~~~~~l~~-~~~~L~~L~l~~c~~l~~~  314 (414)
                      ..+++|+.|+++++ .+..++. .+.+|++|.+.++..++++
T Consensus       199 ~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          199 HGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             TTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred             ccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence            34455555555553 2333322 3444555554444444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.98  E-value=1.6e-10  Score=109.20  Aligned_cols=174  Identities=16%  Similarity=0.068  Sum_probs=81.4

Q ss_pred             ccCCC-cccEEEecCcccCCC--Ccccc-----CcccceeEeeEEEcCh---HHHHHHHhCC-CcccEEEeeccCCccee
Q 015001          135 IFYVE-SLHVLELSYCKLQQP--SENVK-----LFSLRKLALREVCADD---QAIASLISGC-PLIEYLEIRSCEGLESL  202 (414)
Q Consensus       135 ~~~~~-~L~~L~L~~~~~~~~--~~~~~-----l~~L~~L~L~~~~~~~---~~l~~ll~~~-p~Le~L~l~~c~~~~~l  202 (414)
                      +..++ +|++|++++|.+...  .....     +++|++|+|++|.+++   ..+...+..+ ++|++|++++|.....-
T Consensus        46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            33444 566666666655432  11222     2566666666666522   2333334444 56666666666432110


Q ss_pred             ------ecCC-CCCCceEEEeecCCCceEe--------eecc-ceeeeEeeeeccccee-e----ecccc-ccCceeEee
Q 015001          203 ------DLVN-LSNLKEIILVNTSDIKRVE--------IKTS-NVNALAIHQTYLFPIE-V----NVSSC-GNLKCLKFD  260 (414)
Q Consensus       203 ------~i~~-l~~L~~L~l~~~~~l~~~~--------~~~p-~L~~L~l~~~~~~~~~-~----~~~~~-~~L~~L~l~  260 (414)
                            .+.. .++|+.|++++| .+....        ...+ +|++|+++++...... .    .+..+ ++|++|+++
T Consensus       126 ~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          126 SSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             HHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence                  0112 146666666665 222111        0122 6666666665521111 1    12233 366666666


Q ss_pred             ccCCchH---HHHhhhcc-CCCCcEEecccccccc-------cccccccccceEEeeccC
Q 015001          261 FLPIEDE---WLCNGISK-LPLLEYLSMTKCHKLT-------SVRISSPCLKTLILECCD  309 (414)
Q Consensus       261 ~~~~~~~---~~~~~~~~-~~~L~~L~l~~c~~~~-------~l~~~~~~L~~L~l~~c~  309 (414)
                      ++.+.+.   .+...+.. .++|+.|+++++....       .....+++|+.|++++|.
T Consensus       205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            6665542   12222333 3466666666642111       112245666666666664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.98  E-value=5.7e-10  Score=99.64  Aligned_cols=154  Identities=15%  Similarity=0.138  Sum_probs=85.7

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~  203 (414)
                      ...+|..+.  +++++|+++++.+...  ..+..+++|++|+|+++.+.... ...+..+++|++|++++|......  .
T Consensus        26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~  102 (251)
T 3m19_A           26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGV  102 (251)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhH
Confidence            345555443  5778888888776433  34667778888888777663211 122456777777777776543211  2


Q ss_pred             cCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCC
Q 015001          204 LVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL  278 (414)
Q Consensus       204 i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  278 (414)
                      +..+++|+.|+++++ .+..+..    .+++|++|+++++....++. .++.+++|+.|+++++.+... ....+..+++
T Consensus       103 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~  180 (251)
T 3m19_A          103 FDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGK  180 (251)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTT
T ss_pred             hcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCC
Confidence            344667777777766 3333321    34566666666655222222 345556666666666655431 1122344556


Q ss_pred             CcEEeccc
Q 015001          279 LEYLSMTK  286 (414)
Q Consensus       279 L~~L~l~~  286 (414)
                      |+.|++++
T Consensus       181 L~~L~l~~  188 (251)
T 3m19_A          181 LQTITLFG  188 (251)
T ss_dssp             CCEEECCS
T ss_pred             CCEEEeeC
Confidence            66666655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.92  E-value=1.1e-09  Score=97.78  Aligned_cols=145  Identities=14%  Similarity=0.126  Sum_probs=83.3

Q ss_pred             CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEe
Q 015001          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILV  216 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~  216 (414)
                      .+.++++++++.+...+.. -.++|+.|+|+++.+..... ..+..+++|++|++++|......  .+..+++|+.|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            5678899998877543221 22689999999988733221 23567899999999988543221  24556788888888


Q ss_pred             ecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          217 NTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       217 ~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      ++ .+..+.    ..+++|++|+++++....++. .+..+++|+.|+++++.+..- ....+..+++|+.|+++++
T Consensus        92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             TS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             CC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCC
Confidence            77 333332    134566666666555222221 134555666666655554421 1112344455555555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.91  E-value=4.4e-10  Score=93.76  Aligned_cols=127  Identities=20%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             CcccEEEecCcccC---CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEE
Q 015001          139 ESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (414)
Q Consensus       139 ~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l  215 (414)
                      ++|++|++++|.+.   .+.....+++|+.|++++|.++..   ..+..+++|++|++++|.....              
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~--------------   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG--------------   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence            66777777777664   223345666777777766655322   2244455555555555433211              


Q ss_pred             eecCCCceEeeeccceeeeEeeeeccccee--eeccccccCceeEeeccCCchHHH--HhhhccCCCCcEEecccc
Q 015001          216 VNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       216 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c  287 (414)
                           +......+++|++|+++++....++  ..+..+++|+.|+++++.+.....  ...+..+++|+.|++++|
T Consensus        87 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           87 -----LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             -----CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             -----HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence                 1111112445555555544422211  345667777777777776654211  234566777777777775

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.91  E-value=4.8e-10  Score=73.86  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=33.4

Q ss_pred             CCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhc
Q 015001            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW   46 (414)
Q Consensus         8 ~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw   46 (414)
                      ..+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999999754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.86  E-value=5.9e-09  Score=97.84  Aligned_cols=214  Identities=17%  Similarity=0.180  Sum_probs=124.5

Q ss_pred             ccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---e
Q 015001          129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---D  203 (414)
Q Consensus       129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~  203 (414)
                      .++|..+  .+++++|+|+++.+...  ..+.++++|++|+|++|.+....-...+.++++|.++.+..+..+..+   .
T Consensus        22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~   99 (350)
T 4ay9_X           22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   99 (350)
T ss_dssp             CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred             CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence            3555544  25677888887766432  345677788888887776522111123456777776555554444444   2


Q ss_pred             cCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeec-ccceee-ecccc-ccCceeEeeccCCchHHHHhhhccC
Q 015001          204 LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEV-NVSSC-GNLKCLKFDFLPIEDEWLCNGISKL  276 (414)
Q Consensus       204 i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~-~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~  276 (414)
                      +..+++|+.|+++++ .+..+.    ....++..+++.++. ...++. .+..+ ..++.|+++++.+..  +.......
T Consensus       100 f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~  176 (350)
T 4ay9_X          100 FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNG  176 (350)
T ss_dssp             BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTT
T ss_pred             hhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccc
Confidence            455678888888877 333222    234556666665543 111111 23333 367788888877653  22222334


Q ss_pred             CCCcEEecccccccccccc----cccccceEEeeccCCceEeec-cCCCeeeEEEeCcee----EEeccCCccceEEEEe
Q 015001          277 PLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI----SFSSNALSLSETSLCF  347 (414)
Q Consensus       277 ~~L~~L~l~~c~~~~~l~~----~~~~L~~L~l~~c~~l~~~~~-~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~  347 (414)
                      .+|+.|.+.++..++.++.    .+++|+.|++++|. +..++. .+.+|++|...+...    ..+.+.++|+.+++..
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            6788888877666666553    56788888888774 444432 345677776665433    4456677788777754


Q ss_pred             e
Q 015001          348 S  348 (414)
Q Consensus       348 ~  348 (414)
                      +
T Consensus       256 ~  256 (350)
T 4ay9_X          256 P  256 (350)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.86  E-value=2.5e-10  Score=93.19  Aligned_cols=35  Identities=14%  Similarity=0.040  Sum_probs=19.1

Q ss_pred             CcccEEEecCcccC---CCCccccCcccceeEeeEEEc
Q 015001          139 ESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCA  173 (414)
Q Consensus       139 ~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~  173 (414)
                      ++|++|++++|.+.   .+.....+++|+.|++++|.+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l   54 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL   54 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC
Confidence            55666666666554   123334555555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.84  E-value=2.1e-09  Score=93.02  Aligned_cols=147  Identities=18%  Similarity=0.161  Sum_probs=81.1

Q ss_pred             ccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ec
Q 015001          129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL  204 (414)
Q Consensus       129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i  204 (414)
                      ..+|..+  .++|++|+++++.+...  ..+..+++|++|+++++.++.- ....+..+++|++|++++|......  .+
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence            3455433  35788888888876543  2356778888888887766321 1223456778888888777443211  13


Q ss_pred             CCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCC
Q 015001          205 VNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLL  279 (414)
Q Consensus       205 ~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  279 (414)
                      ..+++|+.|+++++ .+..+.    ..+++|++|+++++....+.. .+..+++|+.|++.++.+.        ..+++|
T Consensus        97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l  167 (208)
T 2o6s_A           97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGI  167 (208)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTT
T ss_pred             cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCH
Confidence            45677777777766 333222    134556666665554222221 2445556666666555432        234555


Q ss_pred             cEEecccc
Q 015001          280 EYLSMTKC  287 (414)
Q Consensus       280 ~~L~l~~c  287 (414)
                      +.|.++..
T Consensus       168 ~~L~~~~n  175 (208)
T 2o6s_A          168 RYLSEWIN  175 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.80  E-value=3e-09  Score=88.61  Aligned_cols=104  Identities=26%  Similarity=0.232  Sum_probs=78.4

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|++..+......+|..+..+++|++|++++|.+.....+..+++|+.|++++|.+... +...+..+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence            589999998754333467887788999999999999887656778899999999999998442 4445667999999999


Q ss_pred             eccCCcc--e-eecCCCCCCceEEEeec
Q 015001          194 RSCEGLE--S-LDLVNLSNLKEIILVNT  218 (414)
Q Consensus       194 ~~c~~~~--~-l~i~~l~~L~~L~l~~~  218 (414)
                      ++|....  . -.+..+++|+.|++++|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            9985432  1 13445566666666666

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.79  E-value=1.8e-08  Score=100.26  Aligned_cols=177  Identities=12%  Similarity=-0.008  Sum_probs=110.3

Q ss_pred             CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~  218 (414)
                      .+|+.|+++++.+...+. .-+++|++|+|++|.++.  +.   ..+++|+.|++++|.... +.. -..+|+.|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPD-NLPPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence            589999999998764322 125889999999998852  22   457899999999885432 222 1138899999888


Q ss_pred             CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccccccc
Q 015001          219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSP  298 (414)
Q Consensus       219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~~~~  298 (414)
                       .+..++..+++|+.|+++++....++.   .+++|+.|++++|.+..  ++. +.  ++|+.|+++++. +..++.-..
T Consensus       131 -~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~~~~  200 (571)
T 3cvr_A          131 -QLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPAVPV  200 (571)
T ss_dssp             -CCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCCCC-
T ss_pred             -cCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhhHHH
Confidence             333333356788888888877333322   56788888888887665  333 22  778888888752 223332111


Q ss_pred             cc-------ceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEeecc
Q 015001          299 CL-------KTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       299 ~L-------~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~  350 (414)
                      +|       +.|++++|... .++                ..+.++++|+.|+++.|+.
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l~-~lp----------------~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRIT-HIP----------------ENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -------CCEEEECCSSCCC-CCC----------------GGGGGSCTTEEEECCSSSC
T ss_pred             hhhcccccceEEecCCCcce-ecC----------------HHHhcCCCCCEEEeeCCcC
Confidence            44       66666655321 111                1233467777777776643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.74  E-value=2.8e-09  Score=92.14  Aligned_cols=165  Identities=12%  Similarity=0.029  Sum_probs=107.2

Q ss_pred             cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecC
Q 015001          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS  219 (414)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~  219 (414)
                      +.++.+++.+...+ ....++|++|+++++.++.. ....+..+++|++|++++|......  .+..+++|+.|++++| 
T Consensus        10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-   86 (208)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-
Confidence            45555555543321 23356899999999987421 2233578999999999988543211  2456789999999988 


Q ss_pred             CCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc
Q 015001          220 DIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR  294 (414)
Q Consensus       220 ~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~  294 (414)
                      .+..+.    ..+++|++|+++++....+.. .+..+++|+.|+++++.+... ....+..+++|+.|+++++.    +.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~----~~  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP----WD  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC----BC
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC----ee
Confidence            444333    256788999988876333322 257788899999988876641 22335667888888888852    22


Q ss_pred             ccccccceEEeeccCCceEe
Q 015001          295 ISSPCLKTLILECCDKLIQV  314 (414)
Q Consensus       295 ~~~~~L~~L~l~~c~~l~~~  314 (414)
                      ..+++|+.|.++.+...+.+
T Consensus       162 ~~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          162 CTCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             CCTTTTHHHHHHHHHCTTTB
T ss_pred             cCCCCHHHHHHHHHhCCcee
Confidence            34567777776665544444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.74  E-value=6.9e-09  Score=105.02  Aligned_cols=204  Identities=16%  Similarity=0.128  Sum_probs=107.7

Q ss_pred             ccCcccceeEeeEEEcCh-HHHHHHHhCCCcccEEEeeccCCcce-eecCCCCCCceEEEeecCCCc----eEeeeccce
Q 015001          158 VKLFSLRKLALREVCADD-QAIASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEIILVNTSDIK----RVEIKTSNV  231 (414)
Q Consensus       158 ~~l~~L~~L~L~~~~~~~-~~l~~ll~~~p~Le~L~l~~c~~~~~-l~i~~l~~L~~L~l~~~~~l~----~~~~~~p~L  231 (414)
                      ..+++|+.|+++++.+.. .........+++|+.|++..+..... ..+..+++|+.+++..+....    ......+++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            345556666655544311 11111123455566665554432211 122335666666665541100    111234566


Q ss_pred             eeeEeeeecc-cceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc---cccccccceEEeec
Q 015001          232 NALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILEC  307 (414)
Q Consensus       232 ~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~  307 (414)
                      +.++++.+.. ......+..+++|+.|+++++.......+..+..+++|+.|+|+++......   ...+++|+.|++++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            6666665541 1112234567788888887766444333444667788888888886322221   23567888888887


Q ss_pred             cCCceEe---eccCCCeeeEEEeCcee-----EEeccC-CccceEEEEeecchhh-hHHHHHHH
Q 015001          308 CDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCFSSHLMV-NIEWVVEY  361 (414)
Q Consensus       308 c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~L~l~~~~~~~~-~~~~~~~~  361 (414)
                      |....-.   ....++|+.|++.++..     ..+.+. ++|+.|+++.|+-... ...||...
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~w  591 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW  591 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence            7432111   12446788888877765     334455 6899999988853321 23455443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.72  E-value=3.1e-09  Score=86.65  Aligned_cols=104  Identities=30%  Similarity=0.310  Sum_probs=78.3

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      +++++|++..+......+|..+..+++|++|++++|.+........+++|++|++++|.++.. +...+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            478888887754332467887788999999999999887666778899999999999988543 4455677999999999


Q ss_pred             eccCCcce---eecCCCCCCceEEEeec
Q 015001          194 RSCEGLES---LDLVNLSNLKEIILVNT  218 (414)
Q Consensus       194 ~~c~~~~~---l~i~~l~~L~~L~l~~~  218 (414)
                      ++|.....   -.+..+++|+.|++++|
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            99864331   23445667777777666

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=1.5e-08  Score=95.11  Aligned_cols=130  Identities=17%  Similarity=0.143  Sum_probs=81.5

Q ss_pred             HHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecCCCce-----Ee-eeccceeeeEeeeec---c-cc-e-
Q 015001          177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKR-----VE-IKTSNVNALAIHQTY---L-FP-I-  244 (414)
Q Consensus       177 ~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~-----~~-~~~p~L~~L~l~~~~---~-~~-~-  244 (414)
                      .+..++..+|+|++|.|.+|....-..+. +++|++|++..| .+..     +. ..+|+|++|+++...   . .. + 
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            35567889999999999887433211222 589999999877 2321     11 157999999885321   0 10 0 


Q ss_pred             ----eeeccccccCceeEeeccCCchHHHHhhh--ccCCCCcEEeccccccccc-----cc---ccccccceEEeeccC
Q 015001          245 ----EVNVSSCGNLKCLKFDFLPIEDEWLCNGI--SKLPLLEYLSMTKCHKLTS-----VR---ISSPCLKTLILECCD  309 (414)
Q Consensus       245 ----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~-----l~---~~~~~L~~L~l~~c~  309 (414)
                          ......+|+|+.|++.++.+.+.....+.  ..+|+|++|+|+.+. +..     +.   ..+++|+.|+++.|.
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence                11123578999999988888764433322  357888888887642 222     22   245777888877664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.65  E-value=2.7e-08  Score=87.42  Aligned_cols=132  Identities=15%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~  203 (414)
                      ...+|..+.  ++|++|++++|.+...  ..+..+++|+.|+|+++.++.-. ...+..+++|+.|++++|......  .
T Consensus        31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~  107 (229)
T 3e6j_A           31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAV  107 (229)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChhH
Confidence            345555433  7788888888876543  44567778888888877762111 122456777777777776432211  1


Q ss_pred             cCCCCCCceEEEeecCCCceEe---eeccceeeeEeeeeccccee-eeccccccCceeEeeccC
Q 015001          204 LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       204 i~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~  263 (414)
                      +..+++|+.|+++++ .+..++   ..+++|++|+++++....+. ..+..+++|+.|++.++.
T Consensus       108 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          108 FDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             hCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            334566666666666 232222   13344555555544422111 123444455555554444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.64  E-value=7.7e-09  Score=86.88  Aligned_cols=127  Identities=13%  Similarity=0.073  Sum_probs=69.3

Q ss_pred             ccCCCcccEEEecCcccCCCCccccCc-ccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceE
Q 015001          135 IFYVESLHVLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI  213 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L  213 (414)
                      ...+.+|++|++++|.+...+....+. +|+.|++++|.++.-   ..+..+++|++|++++|..               
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l---------------   76 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI---------------   76 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC---------------
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc---------------
Confidence            445677888888887665433333333 666666666655321   1234455555555555432               


Q ss_pred             EEeecCCCceEe----eeccceeeeEeeeecccceee--eccccccCceeEeeccCCchH--HHHhhhccCCCCcEEecc
Q 015001          214 ILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV--NVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYLSMT  285 (414)
Q Consensus       214 ~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~  285 (414)
                              ..+.    ..+++|++|+++++....++.  .+..+++|+.|+++++.+...  .....+..+|+|+.|+++
T Consensus        77 --------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           77 --------CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             --------CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             --------cccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence                    2222    134555555555554222222  456677777777777766531  111235667888888877


Q ss_pred             cc
Q 015001          286 KC  287 (414)
Q Consensus       286 ~c  287 (414)
                      .+
T Consensus       149 ~n  150 (176)
T 1a9n_A          149 KV  150 (176)
T ss_dssp             EC
T ss_pred             cC
Confidence            75

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.64  E-value=1.4e-08  Score=85.21  Aligned_cols=102  Identities=13%  Similarity=0.156  Sum_probs=70.6

Q ss_pred             CCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeee-ccccccCceeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001          208 SNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (414)
Q Consensus       208 ~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  284 (414)
                      ++|+.|++++| .+..+.  ..+++|++|+++++....++.. +..+++|+.|+++++.+..-.....+..+++|+.|++
T Consensus        42 ~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           42 DQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             TCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCC-CCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence            36666666666 333332  1468899999998874444433 4789999999999999865221125678999999999


Q ss_pred             cccccc--cc----ccccccccceEEeeccCC
Q 015001          285 TKCHKL--TS----VRISSPCLKTLILECCDK  310 (414)
Q Consensus       285 ~~c~~~--~~----l~~~~~~L~~L~l~~c~~  310 (414)
                      +++...  ..    +...+++|+.|+++.+..
T Consensus       121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             cCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            996432  22    234789999999888754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.63  E-value=3.3e-08  Score=86.26  Aligned_cols=134  Identities=16%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             ccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--
Q 015001          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--  202 (414)
Q Consensus       127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--  202 (414)
                      ....+|..+.  ++|++|+++++.+...  ..+..+++|+.|+|+++.++... ...+..+++|++|++++|....--  
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~   98 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS   98 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHh
Confidence            3445565443  6788888888876432  35667788888888887763221 122566788888888877543111  


Q ss_pred             ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCC
Q 015001          203 DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPI  264 (414)
Q Consensus       203 ~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  264 (414)
                      .+..+++|+.|+++++ .+..+.    ..+++|++|+++++....+.. .+..+++|+.|++.++.+
T Consensus        99 ~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           99 LFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             HccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            1344677777777776 333222    134566666666555222221 244555666666655543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.62  E-value=4.2e-09  Score=90.34  Aligned_cols=146  Identities=17%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEee
Q 015001          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~  194 (414)
                      .++...+....+....+|..+..+++|++|++++|.+...+....+++|+.|++++|.++.  +...+..+|+|++|+++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECc
Confidence            3444444433334445555677778888888888776544466667788888888877641  22233445666666666


Q ss_pred             ccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeeccccee--eeccccccCceeEeeccCCchH-----
Q 015001          195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDE-----  267 (414)
Q Consensus       195 ~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~-----  267 (414)
                      +|....--.+.                     .+++|++|+++++....+.  ..+..+++|++|++.++.+...     
T Consensus       102 ~N~l~~l~~~~---------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  160 (198)
T 1ds9_A          102 YNQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN  160 (198)
T ss_dssp             EEECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred             CCcCCcCCccc---------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence            65321100111                     2445555555555422111  2456677777777777765432     


Q ss_pred             ----HHHhhhccCCCCcEEe
Q 015001          268 ----WLCNGISKLPLLEYLS  283 (414)
Q Consensus       268 ----~~~~~~~~~~~L~~L~  283 (414)
                          .....+..+++|+.|+
T Consensus       161 ~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          161 ATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             THHHHHHHHHHHCSSCSEEC
T ss_pred             chHHHHHHHHHhCCCcEEEC
Confidence                1123356677777776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.61  E-value=4.3e-08  Score=81.30  Aligned_cols=96  Identities=18%  Similarity=0.194  Sum_probs=73.9

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEE-cChHHHHHHHhC---CCcccEEEeeccCCcce
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISG---CPLIEYLEIRSCEGLES  201 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---~p~Le~L~l~~c~~~~~  201 (414)
                      ...+|........|++|++++|.+...  .....+++|++|+|++|. +++..+..+...   |++|++|+|++|..+..
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            345666444456899999999986443  345789999999999997 599999987653   68999999999987743


Q ss_pred             e---ecCCCCCCceEEEeecCCCce
Q 015001          202 L---DLVNLSNLKEIILVNTSDIKR  223 (414)
Q Consensus       202 l---~i~~l~~L~~L~l~~~~~l~~  223 (414)
                      -   .+..+++|++|++++|+.+..
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCCc
Confidence            2   345679999999999976654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=2.7e-07  Score=86.56  Aligned_cols=197  Identities=14%  Similarity=0.137  Sum_probs=111.7

Q ss_pred             HHHHHHHHhccccCCCCeeeEEEEEecCCCC--CChhhHHHHHHH-HHhCCCeEEEEEecCCc--------cccCCcccc
Q 015001           68 LTSLEPALLNRQRKMISIKKFSLELDLINSP--ENASLAGRCLGL-AIESEVKELVLVHWRSE--------RRNLPEIIF  136 (414)
Q Consensus        68 ~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~--~~~~~i~~~l~~-~~~~~l~~L~l~~~~~~--------~~~lp~~~~  136 (414)
                      .+.+.+++  .......++.+.+....  ++  .....++.++.. ...++|++|.+......        ...+...+.
T Consensus        94 ~~~~~~fl--~~~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~  169 (362)
T 2ra8_A           94 VNLMDKIL--KDKKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD  169 (362)
T ss_dssp             CCHHHHHH--HCTTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred             HHHHHHHh--cCCCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence            34445555  22223456666655322  22  111344444432 23579999988542111        112445556


Q ss_pred             CCCcccEEEecCcc-cCCCCccccCcccceeEeeEEEcChHHHHHHHh-CCCcccEEEeeccCC-------cce----ee
Q 015001          137 YVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEG-------LES----LD  203 (414)
Q Consensus       137 ~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~~p~Le~L~l~~c~~-------~~~----l~  203 (414)
                      .+++|++|.++++. +..+.  ...++|++|+|..+.++...+..+.. .+|+|+.|.|..+..       ...    +.
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             cCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            67999999998873 33222  24899999999988888777776543 799999999864211       100    11


Q ss_pred             cCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhh---hccCCCCc
Q 015001          204 LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG---ISKLPLLE  280 (414)
Q Consensus       204 i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~  280 (414)
                      ...+|+|+.|.+.+|. +..-.                .......+.+|+|++|+++.+.+.+.....+   +..+++|+
T Consensus       248 ~~~~p~Lr~L~L~~~~-i~~~~----------------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAE-EQNVV----------------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             TTTCTTCCEEEEESCT-THHHH----------------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             cCCCCCcCEEeCCCCC-CchHH----------------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence            1234666666666551 11000                0000111346778888887777776543333   24567888


Q ss_pred             EEecccc
Q 015001          281 YLSMTKC  287 (414)
Q Consensus       281 ~L~l~~c  287 (414)
                      .|+++.|
T Consensus       311 ~L~L~~n  317 (362)
T 2ra8_A          311 FINMKYN  317 (362)
T ss_dssp             EEECCSB
T ss_pred             EEECCCC
Confidence            8888776

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.55  E-value=5.1e-08  Score=91.83  Aligned_cols=144  Identities=20%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             CcccEEEecCcccCCC--Cccc-cCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCCce
Q 015001          139 ESLHVLELSYCKLQQP--SENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKE  212 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~--~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L~~  212 (414)
                      ..++.|+|+++.+...  ..+. .+++|+.|+|+++.++.-.. ..+..+++|++|+|++|... .+   .+..+++|+.
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCE
Confidence            3466666666655322  2233 56666666666665522111 12445666666666666432 22   2344566666


Q ss_pred             EEEeecCCCceEe----eeccceeeeEeeeecccceeeec----cccccCceeEeeccCCchHHHHhhhccCCC--CcEE
Q 015001          213 IILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNV----SSCGNLKCLKFDFLPIEDEWLCNGISKLPL--LEYL  282 (414)
Q Consensus       213 L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L  282 (414)
                      |++++| .+..+.    ..+++|+.|+++++....++...    ..+++|+.|+++++.+..-.. ..+..++.  ++.|
T Consensus       117 L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l  194 (361)
T 2xot_A          117 LLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGL  194 (361)
T ss_dssp             EECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTE
T ss_pred             EECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceE
Confidence            666666 333332    13466666666665532222221    346666666666666543111 11233443  2556


Q ss_pred             eccc
Q 015001          283 SMTK  286 (414)
Q Consensus       283 ~l~~  286 (414)
                      ++++
T Consensus       195 ~l~~  198 (361)
T 2xot_A          195 YLHN  198 (361)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            6555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.55  E-value=5.5e-08  Score=84.79  Aligned_cols=132  Identities=20%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             ccCCccccCCCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001          129 RNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (414)
Q Consensus       129 ~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~  203 (414)
                      ..+|..+.  ..+++|+++++.+...   ..+..+++|+.|+|+++.++.-. ...+..+++|++|++++|......  .
T Consensus        24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~  100 (220)
T 2v70_A           24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKM  100 (220)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred             ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhH
Confidence            34565442  4567888888766432   23567788888888877663211 112566777888888777543211  2


Q ss_pred             cCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccce-eeeccccccCceeEeeccCC
Q 015001          204 LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI  264 (414)
Q Consensus       204 i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  264 (414)
                      +..+++|+.|+++++ .+..+.    ..+++|++|+++++....+ +..+..+++|+.|+++++.+
T Consensus       101 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          101 FKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             GTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             hcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            445677777777766 232221    1345666666665542222 23445556666666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.55  E-value=6e-08  Score=85.11  Aligned_cols=141  Identities=11%  Similarity=0.021  Sum_probs=94.3

Q ss_pred             ccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCCceEEEee
Q 015001          141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN  217 (414)
Q Consensus       141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L~~L~l~~  217 (414)
                      -+.++.++..+...+. .-.++|+.|+|+++.+.... ...+..+++|++|++++|... .+   .+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence            4567777776643322 22489999999999884321 123578899999999998653 22   245678899999988


Q ss_pred             cCCCceEe----eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001          218 TSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       218 ~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (414)
                      | .+..+.    ..+++|++|+++++....++..+..+++|+.|+++++.+..- ....+..+++|+.|++++
T Consensus        98 N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           98 N-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTT
T ss_pred             C-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeC
Confidence            8 444433    246778888888777445555667777888888877776531 113355677777777776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=9.9e-09  Score=87.99  Aligned_cols=97  Identities=20%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             CCCCceEEEeec--CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001          207 LSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (414)
Q Consensus       207 l~~L~~L~l~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  284 (414)
                      +++|+.|++++|  ..+......+++|++|+++++....++ .+..+++|+.|+++++.+..-.....+..+++|+.|++
T Consensus        69 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A           69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             HTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred             CCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence            345555555555  122222224578888888887743333 57788999999999998876433345778999999999


Q ss_pred             cccccccc-------------ccccccccceEE
Q 015001          285 TKCHKLTS-------------VRISSPCLKTLI  304 (414)
Q Consensus       285 ~~c~~~~~-------------l~~~~~~L~~L~  304 (414)
                      +++.....             ....+++|+.|+
T Consensus       148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             cCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            98633222             123567777775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.51  E-value=4.5e-08  Score=85.37  Aligned_cols=142  Identities=13%  Similarity=0.097  Sum_probs=85.1

Q ss_pred             cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecC
Q 015001          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS  219 (414)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~  219 (414)
                      +.++++++.+...+. .-.+.++.|+|+++.++.......+..+++|++|++++|......  .+..+++|+.|+++++ 
T Consensus        14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-   91 (220)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence            578888887654321 224567899999887743322233567889999999887543211  3556788888888877 


Q ss_pred             CCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001          220 DIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       220 ~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (414)
                      .+..+..    .+++|++|+++++....+ +..+..+++|+.|+++++.+.... +..+..+++|+.|++++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecC
Confidence            3333321    456677777766652222 234556667777777666654311 22344566666666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.49  E-value=3.7e-07  Score=92.20  Aligned_cols=101  Identities=16%  Similarity=0.035  Sum_probs=68.2

Q ss_pred             ccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc----ccccccccceEEeeccCCceEee---ccCCC
Q 015001          248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS----VRISSPCLKTLILECCDKLIQVE---IETPN  320 (414)
Q Consensus       248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----l~~~~~~L~~L~l~~c~~l~~~~---~~~p~  320 (414)
                      +..+++++.++++.+.+... .......+++|+.|+++++.....    ....+++|+.|++++|....-.+   ...++
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~  519 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  519 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cccccccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence            45566777777766655432 223356678899999988654333    23367889999999885432222   34578


Q ss_pred             eeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001          321 LSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (414)
Q Consensus       321 L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~  349 (414)
                      |+.|.+.++..     ..+.++++|+.|+++.+.
T Consensus       520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence            89998888765     456778999999998773

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.47  E-value=3e-09  Score=106.19  Aligned_cols=171  Identities=18%  Similarity=0.137  Sum_probs=113.1

Q ss_pred             cCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEc------------ChHHHHHHHhCCCcccEEE-eeccCC--c
Q 015001          136 FYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCA------------DDQAIASLISGCPLIEYLE-IRSCEG--L  199 (414)
Q Consensus       136 ~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~------------~~~~l~~ll~~~p~Le~L~-l~~c~~--~  199 (414)
                      ..+++|+.|+++++.+. .|...+.+++|+.|+++++..            ........+..+++|+.|+ +..+..  +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45788889999988764 235677888888888865531            1123344566777777777 333211  0


Q ss_pred             cee-----ecCC--CCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001          200 ESL-----DLVN--LSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (414)
Q Consensus       200 ~~l-----~i~~--l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (414)
                      ..+     .+..  ...|+.|++++| .+..++  ..+++|+.|+++++....++..++++++|+.|++++|.+..  ++
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred             hhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence            000     0110  146888888888 333322  35778899999888755666678888999999999888876  34


Q ss_pred             hhhccCCCCcEEecccccccc----cccccccccceEEeeccCC
Q 015001          271 NGISKLPLLEYLSMTKCHKLT----SVRISSPCLKTLILECCDK  310 (414)
Q Consensus       271 ~~~~~~~~L~~L~l~~c~~~~----~l~~~~~~L~~L~l~~c~~  310 (414)
                       .+..+++|+.|+++++....    .....+++|+.|++++|..
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence             47788999999998863222    2223678899999988764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.46  E-value=1.1e-07  Score=82.94  Aligned_cols=141  Identities=11%  Similarity=0.081  Sum_probs=82.4

Q ss_pred             cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce--eecCCCCCCceEEEeecC
Q 015001          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTS  219 (414)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~--l~i~~l~~L~~L~l~~~~  219 (414)
                      +.++.+++.+...+.. -.++|+.|+++++.+..-. ...+..+++|++|++++|.....  -.+..+++|+.|+++++ 
T Consensus        14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-   90 (220)
T ss_dssp             TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred             CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence            5677777665432221 1268999999988773211 11356788899999888854321  13556788888888877 


Q ss_pred             CCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001          220 DIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       220 ~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (414)
                      .+..+..    .+++|++|+++++....+ +..+..+++|+.|+++++.+..-. ...+..+++|+.|++++
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCC
Confidence            3333332    356677777766652222 223556666677776666654311 12244456666666665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.45  E-value=9.1e-09  Score=97.21  Aligned_cols=35  Identities=14%  Similarity=0.147  Sum_probs=15.0

Q ss_pred             ccceeEeeEEEcChHHHHHHHhCCCcccEEEeecc
Q 015001          162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSC  196 (414)
Q Consensus       162 ~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c  196 (414)
                      +|+.|+|++|.+++..+..+...+++|++|+|++|
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            44444444444444444333333444444444444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.37  E-value=2.8e-07  Score=86.68  Aligned_cols=162  Identities=15%  Similarity=0.110  Sum_probs=107.4

Q ss_pred             cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHh-CCCcccEEEeeccCCccee---ecCCCCCCceEEEee
Q 015001          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN  217 (414)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~~p~Le~L~l~~c~~~~~l---~i~~l~~L~~L~l~~  217 (414)
                      +.++++++.+...+. .-.+.++.|+|+++.++.-... .+. .+++|++|+|++|... .+   .+..+++|+.|++++
T Consensus        21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence            577888876654321 2235689999999987432222 234 7899999999988543 33   356689999999999


Q ss_pred             cCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhh---ccCCCCcEEecccccc
Q 015001          218 TSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKCHK  289 (414)
Q Consensus       218 ~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~  289 (414)
                      + .+..+..    .+++|++|+++++....+ +..+.++++|++|+++++.+..-. ...+   ..+++|+.|+|+++. 
T Consensus        98 N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~-  174 (361)
T 2xot_A           98 N-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNK-  174 (361)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSC-
T ss_pred             C-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCC-
Confidence            8 5555543    468899999998873322 335778899999999988876511 1112   468899999998852 


Q ss_pred             cccccc----cccc--cceEEeeccC
Q 015001          290 LTSVRI----SSPC--LKTLILECCD  309 (414)
Q Consensus       290 ~~~l~~----~~~~--L~~L~l~~c~  309 (414)
                      +..++.    .++.  |+.|++++|+
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCccCHHHhhhccHhhcceEEecCCC
Confidence            333321    3343  4677777754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=4.6e-07  Score=84.07  Aligned_cols=10  Identities=20%  Similarity=0.262  Sum_probs=6.2

Q ss_pred             CCCeEEEEEe
Q 015001          114 SEVKELVLVH  123 (414)
Q Consensus       114 ~~l~~L~l~~  123 (414)
                      ++++.|+|+.
T Consensus        49 ~~L~~LdLs~   58 (329)
T 3sb4_A           49 PSLKVLDISN   58 (329)
T ss_dssp             TTCCEEEEEE
T ss_pred             ccCeEEecCc
Confidence            4666666665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.26  E-value=3.4e-08  Score=93.26  Aligned_cols=162  Identities=18%  Similarity=0.187  Sum_probs=102.0

Q ss_pred             HHHhCCCeEEEEEecCCcc---ccCCccccC-CCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHHHH-
Q 015001          110 LAIESEVKELVLVHWRSER---RNLPEIIFY-VESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASL-  181 (414)
Q Consensus       110 ~~~~~~l~~L~l~~~~~~~---~~lp~~~~~-~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l-  181 (414)
                      ..+.+++++|++..+.-..   ..+...+.. +++|++|+|++|.+...   .....+++|+.|+|++|.+++.....+ 
T Consensus        68 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           68 AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            3455789999987643221   122233332 37999999999987532   233456789999999999977665543 


Q ss_pred             --H-hCCCcccEEEeeccCCcc----ee--ecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccc
Q 015001          182 --I-SGCPLIEYLEIRSCEGLE----SL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCG  252 (414)
Q Consensus       182 --l-~~~p~Le~L~l~~c~~~~----~l--~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~  252 (414)
                        + ..+++|++|+|++|....    .+  .+...++|++|++++| .+....               ...+...+...+
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g---------------~~~L~~~L~~~~  211 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEG---------------LELLAAQLDRNR  211 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHH---------------HHHHHHHGGGCS
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHH---------------HHHHHHHHhcCC
Confidence              3 357889999999985431    11  1233567777777766 222110               001122344566


Q ss_pred             cCceeEeeccCCchHH---HHhhhccCCCCcEEecccc
Q 015001          253 NLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       253 ~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c  287 (414)
                      +|++|++++|.+++..   +...+..+++|++|+|+++
T Consensus       212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            8888888888887654   3344556788888888886

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.21  E-value=1.1e-06  Score=74.76  Aligned_cols=113  Identities=18%  Similarity=0.141  Sum_probs=54.8

Q ss_pred             ccCCccccCCCcccEEEecCcccCCCC---ccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001          129 RNLPEIIFYVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (414)
Q Consensus       129 ~~lp~~~~~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~  203 (414)
                      ..+|..+.  .+|++|+++++.+....   .+..+++|++|+|+++.++... ...+..+++|++|++++|......  .
T Consensus        21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~   97 (192)
T 1w8a_A           21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHH
Confidence            34554433  26667777766554321   2455666666666666552211 112344555555555555332111  1


Q ss_pred             cCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccc-eeeeccccccCceeEeeccCCc
Q 015001          204 LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIE  265 (414)
Q Consensus       204 i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  265 (414)
                      +..+++                     |++|+++++.... .+..+..+++|+.|+++++.+.
T Consensus        98 ~~~l~~---------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           98 FLGLHQ---------------------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTT---------------------CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             hcCCCC---------------------CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            223344                     4444444443111 1234556677777777766654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.20  E-value=1.2e-06  Score=72.58  Aligned_cols=83  Identities=13%  Similarity=0.038  Sum_probs=50.1

Q ss_pred             ceeeeEeeeecc-cceeeeccccccCceeEeeccC-CchHHHHhhhcc---CCCCcEEeccccccccccc----cccccc
Q 015001          230 NVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISK---LPLLEYLSMTKCHKLTSVR----ISSPCL  300 (414)
Q Consensus       230 ~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~c~~~~~l~----~~~~~L  300 (414)
                      +|++|+++++.. ..-...+.++++|++|++++|. +++..+..+...   +++|++|+|++|..+++-.    ..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            455555555541 1111234567777777777764 666666664442   4577888887776554422    256777


Q ss_pred             ceEEeeccCCce
Q 015001          301 KTLILECCDKLI  312 (414)
Q Consensus       301 ~~L~l~~c~~l~  312 (414)
                      ++|++++|..+.
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            777777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.16  E-value=9.9e-07  Score=87.94  Aligned_cols=118  Identities=16%  Similarity=0.147  Sum_probs=79.4

Q ss_pred             ccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEe--eeccceeeeEee
Q 015001          162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIH  237 (414)
Q Consensus       162 ~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~  237 (414)
                      .|+.|+|++|.++.  +.. +..+++|+.|++++|... .+  .+..+++|+.|++++| .+..++  ..+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECC
Confidence            47777777776632  223 567777888888777543 22  3555778888888877 333332  256788888888


Q ss_pred             eecccce--eeeccccccCceeEeeccCCchH--HHHhhhccCCCCcEEec
Q 015001          238 QTYLFPI--EVNVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYLSM  284 (414)
Q Consensus       238 ~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l  284 (414)
                      ++....+  +..++.+++|+.|++++|.+.+.  ....+...+|+|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8774444  56788899999999999887652  22334556899998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.14  E-value=1.3e-07  Score=97.22  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=35.3

Q ss_pred             CCCCceEEEeecCCCceEe---eeccceeeeEeeeecccceeeeccccccCceeEeeccCCch
Q 015001          207 LSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED  266 (414)
Q Consensus       207 l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  266 (414)
                      +++|+.|++++| .+..++   ..+++|++|+++++....++..++.+++|+.|+|++|.+.+
T Consensus       269 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          269 LSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            444455554444 222222   13566666666666544455567788888888888888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.11  E-value=3.2e-06  Score=71.81  Aligned_cols=102  Identities=16%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             CCCeEEEEEecCCccccCCc--cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCccc
Q 015001          114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  189 (414)
                      .++++|++....  ...++.  .+..+++|++|+++++.+...  ..+..+++|++|+|+++.++.... ..+..+++|+
T Consensus        29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCC
T ss_pred             CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCC
Confidence            388999887642  334554  367789999999999987643  567889999999999998843221 2256789999


Q ss_pred             EEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001          190 YLEIRSCEGLESL--DLVNLSNLKEIILVNT  218 (414)
Q Consensus       190 ~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~  218 (414)
                      +|++++|......  .+..+++|+.|+++++
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            9999998654321  3445667777777665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.05  E-value=4e-06  Score=71.30  Aligned_cols=36  Identities=14%  Similarity=0.222  Sum_probs=17.9

Q ss_pred             cceeeeEeeeecccceee-eccccccCceeEeeccCC
Q 015001          229 SNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPI  264 (414)
Q Consensus       229 p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~  264 (414)
                      ++|++|+++++....++. .+..+++|+.|++.++.+
T Consensus       102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            445555554444222222 245566667777666554

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.05  E-value=1.5e-06  Score=77.95  Aligned_cols=38  Identities=37%  Similarity=0.678  Sum_probs=34.9

Q ss_pred             CccCCCCCHHHHHHHhccCChHHHH-HhhhcccCchhhc
Q 015001            9 VDGISTLPEPILHHILSFLPFKEVA-QTCLLSKRWKQVW   46 (414)
Q Consensus         9 ~D~i~~LPdeiL~~Ils~L~~~d~~-~~~~VskrW~~lw   46 (414)
                      ...+..||+|++.+||++||.++++ ++++|||+|+.+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            3578899999999999999999999 9999999999863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.01  E-value=6e-06  Score=70.18  Aligned_cols=109  Identities=18%  Similarity=0.065  Sum_probs=70.8

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ec
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL  204 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i  204 (414)
                      ...+|..+.  ++|++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+.++++|++|++++|......  .+
T Consensus        22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f   98 (193)
T 2wfh_A           22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTF   98 (193)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHh
Confidence            345555432  5788888888766533 45667788888888887773211 122567788888888877543211  24


Q ss_pred             CCCCCCceEEEeecCCCceEee----eccceeeeEeeeec
Q 015001          205 VNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTY  240 (414)
Q Consensus       205 ~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~  240 (414)
                      ..+++|+.|+++++ .+..+..    .+++|++|+++++.
T Consensus        99 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           99 DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence            55788888888887 4444432    46788888888876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.01  E-value=6.1e-06  Score=68.95  Aligned_cols=106  Identities=19%  Similarity=0.103  Sum_probs=55.4

Q ss_pred             CcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001          139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~  214 (414)
                      ++|++|+++++.+...  ..+..+++|++|+++++.++.- ....+..+++|++|++++|......  .+..+       
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-------   99 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKL-------   99 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHhhCC-------
Confidence            5677777777765432  2245666677777766655311 1112345566666666655332111  12223       


Q ss_pred             EeecCCCceEeeeccceeeeEeeeecccceee-eccccccCceeEeeccCCch
Q 015001          215 LVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED  266 (414)
Q Consensus       215 l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  266 (414)
                                    ++|++|+++++....++. .+..+++|++|+++++.+..
T Consensus       100 --------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          100 --------------TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             --------------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             --------------cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence                          445555554444222222 24567788888888777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.00  E-value=3.9e-06  Score=70.13  Aligned_cols=123  Identities=12%  Similarity=0.023  Sum_probs=72.4

Q ss_pred             ccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001          141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT  218 (414)
Q Consensus       141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~  218 (414)
                      .+.++++++.+...+ ....++|+.|+++++.++.- ....+..+++|++|++++|......  .+..++          
T Consensus         9 ~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------   76 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT----------   76 (177)
T ss_dssp             TTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT----------
T ss_pred             CCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCC----------
Confidence            466777776654322 22346788888887766321 1122456677777777766432110  122334          


Q ss_pred             CCCceEeeeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          219 SDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                                 +|++|+++++....++. .+..+++|+.|+++++.+.. .....+..+++|+.|+++++
T Consensus        77 -----------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           77 -----------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             -----------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSS
T ss_pred             -----------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCC
Confidence                       44555554444222222 35778999999999998764 22234567899999999985

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.00  E-value=8e-07  Score=78.75  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=32.3

Q ss_pred             cCCCCCHHHHHHHhccCChHHHHHhhhcccCchh
Q 015001           11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQ   44 (414)
Q Consensus        11 ~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~   44 (414)
                      .+++||+||+.+||+||+.+|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4778999999999999999999999999999996

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.00  E-value=1.6e-06  Score=89.20  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=76.9

Q ss_pred             HHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEe---eeccceeeeEeeeecccceeeeccccccC
Q 015001          180 SLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNL  254 (414)
Q Consensus       180 ~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L  254 (414)
                      ..+..++.|+.|+|++|... .+  .+..+++|+.|++++| .+..++   ..+++|++|+++++....++..++++++|
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence            34567788888888877543 22  2335688888888887 344433   26789999999998855667778899999


Q ss_pred             ceeEeeccCCchHHHHhhhccCCCCcEEecccccc
Q 015001          255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK  289 (414)
Q Consensus       255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  289 (414)
                      +.|+|++|.+..  ++..+..+++|+.|+|+++..
T Consensus       296 ~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          296 KYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred             CEEECCCCCCCc--cChhhhcCCCccEEeCCCCcc
Confidence            999999988763  444477889999999998643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=2.2e-05  Score=72.55  Aligned_cols=93  Identities=16%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             CCCCceEEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCc-eeEeeccCCchHHHHhhhccCCCCc
Q 015001          207 LSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLE  280 (414)
Q Consensus       207 l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~  280 (414)
                      +++|+.+++..+ .+..+..    .+++|+++.+..+- ..+ ...|.+|++|+ .+++.. .+.. .-...+..|++|+
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ni-~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHNL-KTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCccc-ceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCC
Confidence            578888888876 4555553    46788888887653 111 12467788888 888865 3221 0112356788899


Q ss_pred             EEeccccccccccc----ccccccceEE
Q 015001          281 YLSMTKCHKLTSVR----ISSPCLKTLI  304 (414)
Q Consensus       281 ~L~l~~c~~~~~l~----~~~~~L~~L~  304 (414)
                      .+++... .+..+.    ..+++|+.+.
T Consensus       301 ~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             EEEeCCC-ccCccchhhhcCCcchhhhc
Confidence            9888552 223332    2566777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.82  E-value=3.9e-05  Score=72.98  Aligned_cols=195  Identities=11%  Similarity=0.080  Sum_probs=102.4

Q ss_pred             CcccEEEecCcccC-CCCccccCcccceeEeeEEEc---ChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCCc
Q 015001          139 ESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLK  211 (414)
Q Consensus       139 ~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L~  211 (414)
                      .+|+.+.+...-.. ....+..|++|+.+++.++.+   ....+     .|.+|+++.+..+  +..+   .+.++++|+
T Consensus       157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~  229 (401)
T 4fdw_A          157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLK  229 (401)
T ss_dssp             CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCC
T ss_pred             CCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCC
Confidence            35666666542111 114456667777777765433   22222     2567777776533  2222   344567777


Q ss_pred             eEEEeecCCCceEee---eccceeeeEeeeecccceeeeccccccCceeEeeccCCchH----HHHhhhccCCCCcEEec
Q 015001          212 EIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE----WLCNGISKLPLLEYLSM  284 (414)
Q Consensus       212 ~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l  284 (414)
                      .+.+..  .+..+..   ...+|+++.+......--...|.+|++|+.+.+.++.....    .-...+..|++|+.+.+
T Consensus       230 ~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          230 TIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             CEECCT--TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             EEecCC--CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            777764  3444432   22567777774332000022466788888888876543210    11223566888888888


Q ss_pred             cccccccccc----ccccccceEEeeccCCceEe----eccCCCeeeEEEeCcee-----EEeccC-CccceEEEEe
Q 015001          285 TKCHKLTSVR----ISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCF  347 (414)
Q Consensus       285 ~~c~~~~~l~----~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~L~l~~  347 (414)
                      ..  .+..+.    ..|++|+.+.+..+  +..+    ...+ +|+++.+.+...     ..+.++ ..++++.+..
T Consensus       308 ~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          308 PE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             CC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            75  233333    25677888877543  3332    2233 677777766543     223333 3566666633

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.77  E-value=3.4e-06  Score=81.63  Aligned_cols=42  Identities=26%  Similarity=0.547  Sum_probs=38.0

Q ss_pred             CCCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhccc
Q 015001            7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT   48 (414)
Q Consensus         7 ~~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~   48 (414)
                      -..|.|+.||+|++.+||+||+.+|++++++|||+|+++...
T Consensus        10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            457999999999999999999999999999999999976544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.59  E-value=2.9e-05  Score=74.68  Aligned_cols=40  Identities=30%  Similarity=0.464  Sum_probs=37.0

Q ss_pred             cCCCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhh
Q 015001            6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (414)
Q Consensus         6 ~~~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~l   45 (414)
                      ....|.++.||+|++.+||+||+.+|++++++|||+|+.+
T Consensus        13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            4567999999999999999999999999999999999863

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.58  E-value=6e-05  Score=62.44  Aligned_cols=88  Identities=19%  Similarity=0.130  Sum_probs=46.9

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~  203 (414)
                      ...+|..+.  ++|++|+++++.+...  ..+..+++|++|+|++|.++.- ....+..+++|++|+|++|......  .
T Consensus        21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~   97 (170)
T 3g39_A           21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGA   97 (170)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHH
Confidence            334554442  6677777777766433  3456677777777777666311 1122355666666666666432111  1


Q ss_pred             cCCCCCCceEEEeec
Q 015001          204 LVNLSNLKEIILVNT  218 (414)
Q Consensus       204 i~~l~~L~~L~l~~~  218 (414)
                      +..+++|+.|+++++
T Consensus        98 ~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           98 FDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hcCCCCCCEEEeCCC
Confidence            333455555555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.52  E-value=8.7e-05  Score=61.72  Aligned_cols=87  Identities=16%  Similarity=0.111  Sum_probs=47.3

Q ss_pred             ccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ec
Q 015001          129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL  204 (414)
Q Consensus       129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i  204 (414)
                      ..+|..+.  ++|++|+++++.+...  ..+..+++|+.|+|++|.++.- ....+..+++|+.|+|++|....-.  .+
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  101 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAF  101 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHh
Confidence            45555443  6777777777766433  3456677777777777766321 1112345666666666665432111  13


Q ss_pred             CCCCCCceEEEeec
Q 015001          205 VNLSNLKEIILVNT  218 (414)
Q Consensus       205 ~~l~~L~~L~l~~~  218 (414)
                      ..+++|+.|+++++
T Consensus       102 ~~l~~L~~L~L~~N  115 (174)
T 2r9u_A          102 DNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTCTTCSEEECCSS
T ss_pred             ccccCCCEEEeCCC
Confidence            33455555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.51  E-value=4e-05  Score=64.52  Aligned_cols=40  Identities=18%  Similarity=0.154  Sum_probs=21.4

Q ss_pred             ccccccCceeEe--eccCCchHH---HHhhhccCCCCcEEecccc
Q 015001          248 VSSCGNLKCLKF--DFLPIEDEW---LCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       248 ~~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~c  287 (414)
                      +...++|++|++  .++.+.+..   +...+...++|+.|+++++
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            344456666666  556665543   3333444556666666554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.50  E-value=1.5e-05  Score=76.61  Aligned_cols=38  Identities=37%  Similarity=0.587  Sum_probs=35.9

Q ss_pred             CCCccCCCCCHH----HHHHHhccCChHHHHHhhhcccCchh
Q 015001            7 LEVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQ   44 (414)
Q Consensus         7 ~~~D~i~~LPde----iL~~Ils~L~~~d~~~~~~VskrW~~   44 (414)
                      -..|+++.||+|    ++.+||+||+.++++++++|||+|++
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            457999999999    99999999999999999999999995

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.17  E-value=0.00029  Score=58.25  Aligned_cols=16  Identities=19%  Similarity=0.169  Sum_probs=6.9

Q ss_pred             cccccCceeEeeccCC
Q 015001          249 SSCGNLKCLKFDFLPI  264 (414)
Q Consensus       249 ~~~~~L~~L~l~~~~~  264 (414)
                      .++++|+.|+++++.+
T Consensus        51 ~~l~~L~~L~Ls~N~l   66 (170)
T 3g39_A           51 DRLTQLTRLDLDNNQL   66 (170)
T ss_dssp             TTCTTCSEEECCSSCC
T ss_pred             cCcccCCEEECCCCCc
Confidence            3444444444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.02  E-value=6.2e-05  Score=63.33  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=33.1

Q ss_pred             CCCcccEEEecCc-ccCCC------CccccCcccceeEeeEEEcChHHH---HHHHhCCCcccEEEeeccCC
Q 015001          137 YVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVCADDQAI---ASLISGCPLIEYLEIRSCEG  198 (414)
Q Consensus       137 ~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l---~~ll~~~p~Le~L~l~~c~~  198 (414)
                      .+++|++|+|++| .+...      ......++|++|+|++|.+++...   ...+..++.|++|+|++|..
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            3455666666665 44321      122334566666666666654432   33345556667776666643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.95  E-value=0.0009  Score=63.49  Aligned_cols=178  Identities=14%  Similarity=0.172  Sum_probs=112.7

Q ss_pred             CCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEc--ChHHHHHHHhCCCcccE
Q 015001          115 EVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEY  190 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~~p~Le~  190 (414)
                      +++++.+..   ....++. .+..|.+|+.+++..+.+... .....+.+|+.+.|...-.  ...    .+.+|++|++
T Consensus       158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~  230 (401)
T 4fdw_A          158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKT  230 (401)
T ss_dssp             CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTT----TTTTCTTCCC
T ss_pred             CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhh----HhhCCCCCCE
Confidence            566665532   2233443 455689999999998755322 2333468899998864311  222    3568999999


Q ss_pred             EEeeccCCccee---ecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeeccc------ceeeeccccccCcee
Q 015001          191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLF------PIEVNVSSCGNLKCL  257 (414)
Q Consensus       191 L~l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~------~~~~~~~~~~~L~~L  257 (414)
                      +.+..+  +..+   .+.+ .+|+.+.+..  .+..+..    .+++|+++.+.++...      --.-.|.+|++|+.+
T Consensus       231 l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l  305 (401)
T 4fdw_A          231 IEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF  305 (401)
T ss_dssp             EECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred             EecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence            999864  3333   2334 6899999854  4555543    6789999999775421      012247789999999


Q ss_pred             EeeccCCchHHHHhhhccCCCCcEEeccccccccccc----ccccccceEEeeccC
Q 015001          258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCD  309 (414)
Q Consensus       258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~----~~~~~L~~L~l~~c~  309 (414)
                      .+... +.. .-...+..|.+|+.+.|...  +..+.    ..+ +|+.+.+.++.
T Consensus       306 ~l~~~-i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          306 EIPES-IRI-LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CCCTT-CCE-ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             EeCCc-eEE-EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            99732 221 01123567899999999652  33332    255 89999988764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.93  E-value=0.0009  Score=55.47  Aligned_cols=55  Identities=9%  Similarity=0.020  Sum_probs=31.8

Q ss_pred             ccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccC
Q 015001          141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE  197 (414)
Q Consensus       141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~  197 (414)
                      -+.++++++.+...+.. -.++|+.|+|+++.+..-. ...+..+++|++|+|++|.
T Consensus        14 ~~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~   68 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNK   68 (174)
T ss_dssp             SSEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCC
Confidence            36777887766433221 1367888888777663211 1224556667777776663

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.81  E-value=0.0016  Score=61.65  Aligned_cols=130  Identities=13%  Similarity=0.155  Sum_probs=60.4

Q ss_pred             CCCceEEEeecCCCceEee----eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001          208 SNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (414)
Q Consensus       208 ~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  283 (414)
                      .+|+.+.+...  +..+..    .+++|+.+.+......-....+..++.++.+......+.+.    .+..+.+|+.+.
T Consensus       230 ~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~  303 (394)
T 4fs7_A          230 TGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVK  303 (394)
T ss_dssp             CCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEE
T ss_pred             CCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccc----cccccccccccc
Confidence            45666655432  222221    34556666554432110112244555666555543333221    234566666666


Q ss_pred             ccccccccccc----ccccccceEEeeccCCceEe----eccCCCeeeEEEeCcee----EEeccCCccceEEEEe
Q 015001          284 MTKCHKLTSVR----ISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI----SFSSNALSLSETSLCF  347 (414)
Q Consensus       284 l~~c~~~~~l~----~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~  347 (414)
                      +...  +..+.    ..|.+|+.+++...  ++.+    ...+.+|+++.+...-.    ..+.++++|+++.+..
T Consensus       304 l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          304 LLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             ECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred             cccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence            6441  22222    14556666655321  2222    12334455554432211    5677888888888843

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.64  E-value=0.0011  Score=61.31  Aligned_cols=89  Identities=18%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             ccccCCccccCCCcccEEEecC-cccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee-
Q 015001          127 ERRNLPEIIFYVESLHVLELSY-CKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-  202 (414)
Q Consensus       127 ~~~~lp~~~~~~~~L~~L~L~~-~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l-  202 (414)
                      ....+|. +..+++|++|+|++ +.+...  ..+..+++|+.|+|++|.++.-. ...+.++++|+.|+|++|....-. 
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCH
Confidence            3456888 77888999999986 766433  45778899999999988773221 223578899999999888543211 


Q ss_pred             -ecCCCCCCceEEEeec
Q 015001          203 -DLVNLSNLKEIILVNT  218 (414)
Q Consensus       203 -~i~~l~~L~~L~l~~~  218 (414)
                       .+.. .+|+.|++.++
T Consensus        98 ~~~~~-~~L~~l~l~~N  113 (347)
T 2ifg_A           98 KTVQG-LSLQELVLSGN  113 (347)
T ss_dssp             TTTCS-CCCCEEECCSS
T ss_pred             HHccc-CCceEEEeeCC
Confidence             1222 23888888776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.10  E-value=0.0089  Score=55.19  Aligned_cols=75  Identities=12%  Similarity=-0.049  Sum_probs=43.0

Q ss_pred             EEEecCc-ccCCCCccccCcccceeEeeE-EEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001          143 VLELSYC-KLQQPSENVKLFSLRKLALRE-VCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT  218 (414)
Q Consensus       143 ~L~L~~~-~~~~~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~  218 (414)
                      .++.++. .+...+....+++|+.|+|++ +.+..-. ...+..+++|+.|+|++|......  .+..+++|+.|+++++
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            3455655 443322266677788888875 6552211 122556777777777777432211  2345677777777766

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.96  E-value=0.0023  Score=56.84  Aligned_cols=39  Identities=26%  Similarity=0.209  Sum_probs=16.4

Q ss_pred             ccCCCcccEEEecCcccCCCCccccCc--ccceeEeeEEEc
Q 015001          135 IFYVESLHVLELSYCKLQQPSENVKLF--SLRKLALREVCA  173 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~--~L~~L~L~~~~~  173 (414)
                      +..+++|+.|+|++|.+........+.  +|+.|+|.+|.+
T Consensus       192 ~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          192 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred             HhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcC
Confidence            334455555555554443322222222  444444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.89  E-value=0.0035  Score=55.61  Aligned_cols=32  Identities=22%  Similarity=0.183  Sum_probs=21.5

Q ss_pred             cCceeEeeccCCch------HHHHhhhccCCCCcEEec
Q 015001          253 NLKCLKFDFLPIED------EWLCNGISKLPLLEYLSM  284 (414)
Q Consensus       253 ~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l  284 (414)
                      +|++|++.+|.+..      .-...++..+|+|+.|+=
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            77888888777653      223345677888887763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.44  E-value=0.12  Score=48.40  Aligned_cols=139  Identities=13%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             cCCCcccEEEecCcccCC-CCccccCcccceeEeeEEEc--ChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCce
Q 015001          136 FYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKE  212 (414)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~  212 (414)
                      +.+.+|+.+.+....... ...+..+.+|+.+.+.....  ...    .+..|+.++.+...... ........+.+|+.
T Consensus       227 ~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~~  301 (394)
T 4fs7_A          227 LSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVI-VPEKTFYGCSSLTE  301 (394)
T ss_dssp             TTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSE-ECTTTTTTCTTCCE
T ss_pred             cccCCCceEEECCCceecccccccccccceeEEcCCCcceeecc----ccccccccceeccCcee-eccccccccccccc
Confidence            345667777665432111 13445566666666643321  111    13456666655543321 11112233466666


Q ss_pred             EEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeecc--CCchHHHHhhhccCCCCcEEecc
Q 015001          213 IILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMT  285 (414)
Q Consensus       213 L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~  285 (414)
                      +.+..  .+..+..    .+.+|+++.+.... ..+ ...|.+|.+|+.+.+..+  .+..    ..+..|++|+.+.+.
T Consensus       302 i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v-~~I~~~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          302 VKLLD--SVKFIGEEAFESCTSLVSIDLPYLV-EEIGKRSFRGCTSLSNINFPLSLRKIGA----NAFQGCINLKKVELP  374 (394)
T ss_dssp             EEECT--TCCEECTTTTTTCTTCCEECCCTTC-CEECTTTTTTCTTCCEECCCTTCCEECT----TTBTTCTTCCEEEEE
T ss_pred             ccccc--ccceechhhhcCCCCCCEEEeCCcc-cEEhHHhccCCCCCCEEEECccccEehH----HHhhCCCCCCEEEEC
Confidence            66543  2333332    35666666664321 001 123566777877777532  1222    235667888888776


Q ss_pred             c
Q 015001          286 K  286 (414)
Q Consensus       286 ~  286 (414)
                      .
T Consensus       375 ~  375 (394)
T 4fs7_A          375 K  375 (394)
T ss_dssp             G
T ss_pred             C
Confidence            5

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.75  E-value=0.21  Score=41.76  Aligned_cols=21  Identities=14%  Similarity=0.118  Sum_probs=13.6

Q ss_pred             HHHHHHHhCCCcccEEEeecc
Q 015001          176 QAIASLISGCPLIEYLEIRSC  196 (414)
Q Consensus       176 ~~l~~ll~~~p~Le~L~l~~c  196 (414)
                      +.+..++.+.+.|++|+|.++
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~n   51 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNM   51 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTC
T ss_pred             HHHHHHHhcCCCccEEECCCC
Confidence            455666666777777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.44  E-value=0.092  Score=49.31  Aligned_cols=121  Identities=18%  Similarity=0.188  Sum_probs=65.4

Q ss_pred             CccccCcccceeEeeEEEc--ChHHHHHHHhCCCcccEEEeeccC-CcceeecCCCCCCceEEEeecCCCceEee----e
Q 015001          155 SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCE-GLESLDLVNLSNLKEIILVNTSDIKRVEI----K  227 (414)
Q Consensus       155 ~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~~p~Le~L~l~~c~-~~~~l~i~~l~~L~~L~l~~~~~l~~~~~----~  227 (414)
                      ..+..+.+|+.+.+.....  ...    .+.+|+.|+++.+...- .+..-.+.+|.+|+.+.+..  .+..+.-    .
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~  332 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQILDDAFAG  332 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred             ceeeecccccEEecccccceecCc----ccccccccccccCCCcccccCceeecCCCCcCEEEeCC--cccEehHhHhhC
Confidence            3455667777777643221  222    24567888887775321 11112344567788877764  3555542    4


Q ss_pred             ccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001          228 TSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       228 ~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (414)
                      |.+|+++.+.... ..+ ...|.+|++|+.+.+.++....    ..+..+.+|+.+.+..
T Consensus       333 C~~L~~i~ip~sv-~~I~~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          333 CEQLERIAIPSSV-TKIPESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CTTCCEEEECTTC-CBCCGGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC-------
T ss_pred             CCCCCEEEECccc-CEEhHhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCC
Confidence            6788888875432 111 2347788999999987654221    2355677888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.77  E-value=0.28  Score=45.99  Aligned_cols=76  Identities=13%  Similarity=0.150  Sum_probs=34.6

Q ss_pred             ccceeeeEeeeecccceeeeccccccCceeEeecc--CCchHHHHhhhccCCCCcEEecccc-ccccccc-ccccccceE
Q 015001          228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKC-HKLTSVR-ISSPCLKTL  303 (414)
Q Consensus       228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c-~~~~~l~-~~~~~L~~L  303 (414)
                      +++|+++.+......--...|.+|.+|+++.|...  .+.+.    .+..|.+|+.+.|... ..++.-. ..|++|+.+
T Consensus       287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEE
T ss_pred             ccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEE
Confidence            45555555543210000113555666776666422  12221    2445666777666431 1121111 255666666


Q ss_pred             Eeec
Q 015001          304 ILEC  307 (414)
Q Consensus       304 ~l~~  307 (414)
                      .+.+
T Consensus       363 ~~~~  366 (394)
T 4gt6_A          363 EYSG  366 (394)
T ss_dssp             EESS
T ss_pred             EECC
Confidence            6654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.26  E-value=0.078  Score=44.44  Aligned_cols=97  Identities=18%  Similarity=0.149  Sum_probs=52.7

Q ss_pred             ChhhHHHHHHHHHh--CCCeEEEEEec-CCc---cccCCccccCCCcccEEEecCcccCCC------CccccCcccceeE
Q 015001          100 NASLAGRCLGLAIE--SEVKELVLVHW-RSE---RRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLA  167 (414)
Q Consensus       100 ~~~~i~~~l~~~~~--~~l~~L~l~~~-~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~  167 (414)
                      ...+++..+.....  +.+++|+|... ...   ...+-..+..-++|++|+|++|.+...      .....-+.|++|+
T Consensus        25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN  104 (197)
T ss_dssp             --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred             CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence            34456777766654  36777777532 111   112333444557788888888776532      1112235677777


Q ss_pred             eeEEEcChHHHHHH---HhCCCcccEEEeecc
Q 015001          168 LREVCADDQAIASL---ISGCPLIEYLEIRSC  196 (414)
Q Consensus       168 L~~~~~~~~~l~~l---l~~~p~Le~L~l~~c  196 (414)
                      |++|.+++.....+   +.....|++|.|+++
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            77777766554443   333445666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=84.18  E-value=1.1  Score=41.48  Aligned_cols=138  Identities=14%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             CCCcccEEEecCccc-CCCCccccCcccceeEeeEEEc--ChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCC
Q 015001          137 YVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNL  210 (414)
Q Consensus       137 ~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L  210 (414)
                      .+.++..+.+..... .....+..+.+|+.+.+.....  ...    ...+|..|+++.+...  +..+   ....+.+|
T Consensus       192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKN--VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTT--CCEECTTTTTTCTTC
T ss_pred             ccccccccccccceeEEeecccccccccceeeeccceeEEccc----cccCCccceEEEcCCC--ccEeCccccceeehh
Confidence            345555555544211 1113445566676666643211  111    2456788888877653  2222   33446777


Q ss_pred             ceEEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeecc--CCchHHHHhhhccCCCCcEEe
Q 015001          211 KEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLS  283 (414)
Q Consensus       211 ~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~  283 (414)
                      +.+.+..  .+..+..    .+++|+++.+.+.....+ .-.|.+|.+|+.+.+...  .+...    .+.+|.+|+.+.
T Consensus       266 ~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~  339 (379)
T 4h09_A          266 KTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTIS  339 (379)
T ss_dssp             CEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCC
T ss_pred             ccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEE
Confidence            7777753  3444432    467788887765431111 124677888998888532  12222    245678888777


Q ss_pred             ccc
Q 015001          284 MTK  286 (414)
Q Consensus       284 l~~  286 (414)
                      +..
T Consensus       340 ip~  342 (379)
T 4h09_A          340 YPK  342 (379)
T ss_dssp             CCT
T ss_pred             ECC
Confidence            643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	414
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	6e-06
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	8e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-04

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 7  LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
           + D IS LP+ +  ++LSFL  K++ Q     + W+ +
Sbjct: 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (100), Expect = 6e-06
 Identities = 11/46 (23%), Positives = 26/46 (56%)

Query: 7  LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDV 52
          L+ D I++LP  I   I ++L F+++  +  +S+ W ++ +    +
Sbjct: 1  LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 8e-05
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 6  VLEVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQVWQ 47
          +L+ D I+ LP      I  +ILS+L  K +    L+ K W +V  
Sbjct: 5  MLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS 50

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 13 STLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
           +LP+ +L  I S L   E+ +   + KRW ++
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.25
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.24
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.18
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.17
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.98
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.82
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.81
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.75
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.72
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.62
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.44
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.01
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.01
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.83
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.71
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.37

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.2e-16  Score=142.05  Aligned_cols=172  Identities=18%  Similarity=0.214  Sum_probs=74.7

Q ss_pred             CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEE
Q 015001          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYL  191 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L  191 (414)
                      ++++|+++.+......++..+..|++|++|++++|.+...  .....+++|++|++++|.. ++..+..+..+||+|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            4555555433222222333344455555555555543221  2233455555555555432 555555555555555555


Q ss_pred             EeeccCCccee----ec-CCCCCCceEEEeec-CCCc-----eEeeeccceeeeEeeeec--ccceeeeccccccCceeE
Q 015001          192 EIRSCEGLESL----DL-VNLSNLKEIILVNT-SDIK-----RVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLK  258 (414)
Q Consensus       192 ~l~~c~~~~~l----~i-~~l~~L~~L~l~~~-~~l~-----~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~  258 (414)
                      ++++|..+..-    .+ ..+++|++|++++| ..+.     .+...+|+|++|+++++.  .+.....+..+++|++|+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            55555443211    01 11245555555544 1111     111234555555554433  111122334445555555


Q ss_pred             eecc-CCchHHHHhhhccCCCCcEEecccc
Q 015001          259 FDFL-PIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       259 l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      +++| .+++..+.. ++.+|+|+.|++++|
T Consensus       207 L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         207 LSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             CCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            5443 233333332 334455555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.4e-15  Score=131.91  Aligned_cols=81  Identities=17%  Similarity=0.236  Sum_probs=40.2

Q ss_pred             CCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceee----cCCCCCC
Q 015001          138 VESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD----LVNLSNL  210 (414)
Q Consensus       138 ~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~----i~~l~~L  210 (414)
                      ..+|++|++++|.+...   .....+++|++|+|.++.+++..+.. +..+|+|++|++++|..+....    ..++++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34566666666554321   22445556666666655555444443 3445556666665554442211    1224555


Q ss_pred             ceEEEeecC
Q 015001          211 KEIILVNTS  219 (414)
Q Consensus       211 ~~L~l~~~~  219 (414)
                      ++|++++|.
T Consensus       124 ~~L~ls~c~  132 (284)
T d2astb2         124 DELNLSWCF  132 (284)
T ss_dssp             CEEECCCCT
T ss_pred             ccccccccc
Confidence            555555553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=9.9e-12  Score=107.27  Aligned_cols=81  Identities=23%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~  214 (414)
                      +..+++|++|++++|.+........+++|+.++++++.++.  +. -+..+++|+.+.+.+|.......+...+.++.+.
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~  135 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY  135 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEE
T ss_pred             HhcCCCCcEeecCCceeeccccccccccccccccccccccc--cc-cccccccccccccccccccccchhccccchhhhh
Confidence            44455555555555554433334555555555555544421  11 1334555555555544333222222334444444


Q ss_pred             Eeec
Q 015001          215 LVNT  218 (414)
Q Consensus       215 l~~~  218 (414)
                      +..+
T Consensus       136 ~~~~  139 (227)
T d1h6ua2         136 LDLN  139 (227)
T ss_dssp             CCSS
T ss_pred             chhh
Confidence            4443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=1.6e-11  Score=105.89  Aligned_cols=170  Identities=18%  Similarity=0.145  Sum_probs=125.7

Q ss_pred             cCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEE
Q 015001          136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (414)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l  215 (414)
                      ..+.+|++|++.+|.+........+++|++|+++++.++.-.  . +..+++|+.+.+.+|....--.+..+++|+.+.+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccccccccccccccccccccc
Confidence            345789999999998876667889999999999999884321  1 6889999999999886543224667899999999


Q ss_pred             eecCCCceEe-eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc
Q 015001          216 VNTSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR  294 (414)
Q Consensus       216 ~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~  294 (414)
                      +.|....... ...+.++.+.++++.... ...+.++++|++|++.++.+.+.  . .+..+++|+.|+++++ .+..+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~Ls~n-~l~~l~  189 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDL--T-PLANLSKLTTLKADDN-KISDIS  189 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSS-CCCCCG
T ss_pred             ccccccccchhccccchhhhhchhhhhch-hhhhccccccccccccccccccc--h-hhcccccceecccCCC-ccCCCh
Confidence            9883222212 246778888887765222 23467889999999998887642  1 2678999999999997 344443


Q ss_pred             --ccccccceEEeeccCCceEe
Q 015001          295 --ISSPCLKTLILECCDKLIQV  314 (414)
Q Consensus       295 --~~~~~L~~L~l~~c~~l~~~  314 (414)
                        ..+++|++|++++|. +.++
T Consensus       190 ~l~~l~~L~~L~Ls~N~-lt~i  210 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNNQ-ISDV  210 (227)
T ss_dssp             GGGGCTTCCEEECTTSC-CCBC
T ss_pred             hhcCCCCCCEEECcCCc-CCCC
Confidence              377999999999984 4443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=1.3e-11  Score=104.16  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=61.4

Q ss_pred             CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (414)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~  218 (414)
                      +++++|+++++.+........+++|++|++++|.+++-.  . +.++++|++|.+.+|.....-.+..+++|+.|++.+|
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccccccccccccccccccccc
Confidence            344455555544433333444555555555554442211  1 3445555555555543322112334455555555544


Q ss_pred             CCCceEe-eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          219 SDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       219 ~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      ....... ..+++|+.++++++....+ ..+..+++|+.|++.++.+.+  +. .+..+++|+.|+++++
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~~~~L~~L~l~~n~l~~--l~-~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         117 QITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTD--LK-PLANLTTLERLDISSN  182 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSS
T ss_pred             ccccccccchhhhhHHhhhhhhhhccc-ccccccccccccccccccccC--Cc-cccCCCCCCEEECCCC
Confidence            1111000 1234455555544431111 124455555555555555443  11 1345555555555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=2.2e-11  Score=113.30  Aligned_cols=136  Identities=20%  Similarity=0.176  Sum_probs=74.8

Q ss_pred             CCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001          207 LSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (414)
Q Consensus       207 l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  284 (414)
                      +++++.+.++++ .+..+.  ...++|++|+++++....+ ..+..+++|+.|++.++.+.+-  .. +..+++|+.|++
T Consensus       196 l~~~~~l~l~~n-~i~~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l  270 (384)
T d2omza2         196 LTNLESLIATNN-QISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKL  270 (384)
T ss_dssp             CTTCSEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEEC
T ss_pred             ccccceeeccCC-ccCCCCcccccCCCCEEECCCCCCCCc-chhhcccccchhccccCccCCC--Cc-ccccccCCEeec
Confidence            455666666655 222221  1345666666666552221 1345556666666666555431  11 444566666665


Q ss_pred             ccccc---------------------cccc--cccccccceEEeeccCCceEe--eccCCCeeeEEEeCcee---EEecc
Q 015001          285 TKCHK---------------------LTSV--RISSPCLKTLILECCDKLIQV--EIETPNLSIFKYHGDLI---SFSSN  336 (414)
Q Consensus       285 ~~c~~---------------------~~~l--~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~l~~~~~~~---~~~~~  336 (414)
                      +++..                     +..+  ...++++++|+++++.. .++  ....|+|++|.+.++..   ..+.+
T Consensus       271 ~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l-~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~  349 (384)
T d2omza2         271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-SDISPVSSLTKLQRLFFANNKVSDVSSLAN  349 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC-SCCGGGGGCTTCCEEECCSSCCCCCGGGGG
T ss_pred             cCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCC-CCCcccccCCCCCEEECCCCCCCCChhHcC
Confidence            54210                     1111  12456777777777643 222  23557788888887765   34677


Q ss_pred             CCccceEEEEee
Q 015001          337 ALSLSETSLCFS  348 (414)
Q Consensus       337 ~~~L~~L~l~~~  348 (414)
                      +++|++|+++.+
T Consensus       350 l~~L~~L~l~~N  361 (384)
T d2omza2         350 LTNINWLSAGHN  361 (384)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            788888888766

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=3.1e-11  Score=102.74  Aligned_cols=158  Identities=18%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             cccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecC
Q 015001          140 SLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTS  219 (414)
Q Consensus       140 ~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~  219 (414)
                      +|++|++++|.+....+...+++|++|+++++.+++-.  . ++.+++|+.|++++|....--.+..+++|+.|++.+|.
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~--~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc--c-cccCcccccccccccccccccccccccccccccccccc
Confidence            34444444444433333334444444444444432111  1 23444444444444422110123334444444444441


Q ss_pred             CCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc--c
Q 015001          220 DIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--I  295 (414)
Q Consensus       220 ~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~--~  295 (414)
                       +..+.  ..+++++.+.++++.... ...+..+++|+.+++.++.+.+  +.. +..+++|+.|+++++. ++.+.  .
T Consensus       124 -~~~~~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N~-i~~l~~l~  197 (210)
T d1h6ta2         124 -ISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNH-ISDLRALA  197 (210)
T ss_dssp             -CCCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCBCGGGT
T ss_pred             -ccccccccccccccccccccccccc-cccccccccccccccccccccc--ccc-ccCCCCCCEEECCCCC-CCCChhhc
Confidence             11111  123444444444433111 1123445556666665555443  111 4455556666655541 22222  1


Q ss_pred             cccccceEEee
Q 015001          296 SSPCLKTLILE  306 (414)
Q Consensus       296 ~~~~L~~L~l~  306 (414)
                      .+++|++|+++
T Consensus       198 ~l~~L~~L~Ls  208 (210)
T d1h6ta2         198 GLKNLDVLELF  208 (210)
T ss_dssp             TCTTCSEEEEE
T ss_pred             CCCCCCEEEcc
Confidence            34455555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=2.4e-11  Score=102.59  Aligned_cols=159  Identities=16%  Similarity=0.170  Sum_probs=120.9

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~  192 (414)
                      ..++++|++......  .+. .+..+++|++|++++|.+........+++|++|+++++....-.   -+++++.|+.|.
T Consensus        39 l~~l~~L~l~~~~i~--~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIK--SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCC--Ccc-ccccCCCcCcCccccccccCcccccCCccccccccccccccccc---cccccccccccc
Confidence            368898888764322  232 46678999999999998876666889999999999998773221   167899999999


Q ss_pred             eeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (414)
Q Consensus       193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  270 (414)
                      +.+|.....-.+..+++|+.|++++| .+..+.  ..+++|++|++.++....+ ..++++++|++|+++++.+++  +.
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~i~~--i~  188 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVSD--IS  188 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC--CG
T ss_pred             ccccccccccccchhhhhHHhhhhhh-hhcccccccccccccccccccccccCC-ccccCCCCCCEEECCCCCCCC--Cc
Confidence            99887655445667899999999998 344443  2578999999998873332 247889999999999998876  22


Q ss_pred             hhhccCCCCcEE
Q 015001          271 NGISKLPLLEYL  282 (414)
Q Consensus       271 ~~~~~~~~L~~L  282 (414)
                       .+..+++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             35678888876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.17  E-value=8.8e-12  Score=113.09  Aligned_cols=212  Identities=15%  Similarity=0.074  Sum_probs=119.1

Q ss_pred             CCeEEEEEec-CCccccCCccccCCCcccEEEecCc-ccC--CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          115 EVKELVLVHW-RSERRNLPEIIFYVESLHVLELSYC-KLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       115 ~l~~L~l~~~-~~~~~~lp~~~~~~~~L~~L~L~~~-~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      +|++|++... ......+|..+..+++|++|+|++| .+.  .|..+.++++|++|+|+++.+.... ...+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-PDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-CGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc-cccccchhhhcc
Confidence            6788888763 2344578888889999999999873 443  4466888899999999998773211 123567888888


Q ss_pred             EEeeccCCccee--ecCCCCCCceEEEeecCCCceEee---eccc-eeeeEeeeeccc-ceeeeccccccCceeEeeccC
Q 015001          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI---KTSN-VNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~---~~p~-L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~  263 (414)
                      +.+..|.....+  .+..+++|+.++++++.....++.   ..++ ++.+.++++... ..+..+..+ .+..+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            888877544332  355678888888887722112221   2333 355555554411 111122222 22234444433


Q ss_pred             CchHHHHhhhccCCCCcEEeccccccccccc--ccccccceEEeeccCCceEeec---cCCCeeeEEEeCc
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQVEI---ETPNLSIFKYHGD  329 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~--~~~~~L~~L~l~~c~~l~~~~~---~~p~L~~l~~~~~  329 (414)
                      .... .......+++++.+++.++.....++  ..+++|+.|++++|...+.++.   ..++|+.|++.++
T Consensus       209 ~~~~-~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            3221 22334556667777666653322222  2456667777766654433321   2344555554444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=4.1e-11  Score=102.01  Aligned_cols=162  Identities=19%  Similarity=0.226  Sum_probs=122.5

Q ss_pred             CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  193 (414)
                      ..++++++..+..  ..++ .+..+++|++|++++|.+........+++|+.|++++|.+++  +. -+..+++|+.|.+
T Consensus        46 ~~L~~L~l~~~~i--~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCC--CCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--cc-ccccccccccccc
Confidence            3788887765332  2333 367789999999999988766667889999999999998853  22 2678999999999


Q ss_pred             eccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh
Q 015001          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (414)
Q Consensus       194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  271 (414)
                      .+|....--.+..+++++.+.+..+ .+....  ..+++|+.++++++....+ ..+.++++|++|+++++.+.+  +. 
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n-~l~~~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~i~~--l~-  194 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD--LR-  194 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCB--CG-
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccccccccccccccccc-ccccCCCCCCEEECCCCCCCC--Ch-
Confidence            9986543334566789999999887 333332  2578999999998873332 247889999999999998875  33 


Q ss_pred             hhccCCCCcEEeccc
Q 015001          272 GISKLPLLEYLSMTK  286 (414)
Q Consensus       272 ~~~~~~~L~~L~l~~  286 (414)
                      .+..+++|+.|+|++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            378899999999874

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.9e-12  Score=75.14  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHhccCChHHHHHhhhcccCchhhc
Q 015001           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW   46 (414)
Q Consensus        12 i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw   46 (414)
                      ++.||+|++.+||+|||.+|++++++|||+|+++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=5.8e-10  Score=103.48  Aligned_cols=171  Identities=17%  Similarity=0.150  Sum_probs=120.3

Q ss_pred             cCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCC
Q 015001          130 NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSN  209 (414)
Q Consensus       130 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~  209 (414)
                      ..+.....++++..+.++++.+........+++|++|++.++.+.+-  . .+..+++|++|.+.+|.......+..+++
T Consensus       188 ~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  264 (384)
T d2omza2         188 SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTK  264 (384)
T ss_dssp             CCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             ccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCccccccc
Confidence            34445566788899999988776555567788899999988877432  1 25678999999998886544335667789


Q ss_pred             CceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          210 LKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       210 L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      |+.|+++.+ .+..+.  ...+.++.+....+.... ...+..+++++.|+++++.+.+-  .. +..+++|+.|++++|
T Consensus       265 L~~L~l~~~-~l~~~~~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~l~~L~ls~n~l~~l--~~-l~~l~~L~~L~L~~n  339 (384)
T d2omza2         265 LTELKLGAN-QISNISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDI--SP-VSSLTKLQRLFFANN  339 (384)
T ss_dssp             CSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCSC-CGGGGGCTTCSEEECCSSCCSCC--GG-GGGCTTCCEEECCSS
T ss_pred             CCEeeccCc-ccCCCCcccccccccccccccccccc-ccccchhcccCeEECCCCCCCCC--cc-cccCCCCCEEECCCC
Confidence            999999877 333222  245677777777665222 22467788999999988887652  22 677899999999987


Q ss_pred             cccccc--cccccccceEEeeccC
Q 015001          288 HKLTSV--RISSPCLKTLILECCD  309 (414)
Q Consensus       288 ~~~~~l--~~~~~~L~~L~l~~c~  309 (414)
                      . ++.+  ...+++|+.|++++|.
T Consensus       340 ~-l~~l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         340 K-VSDVSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             C-CCCCGGGGGCTTCCEEECCSSC
T ss_pred             C-CCCChhHcCCCCCCEEECCCCc
Confidence            3 3333  2367889999998774

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.00  E-value=1.2e-10  Score=105.31  Aligned_cols=198  Identities=12%  Similarity=0.056  Sum_probs=133.0

Q ss_pred             hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCC--CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      .+++++|++..+......+|..+..+++|++|++++|.+..  +.....+++|+.+++.++..... +...+..++.|+.
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~  153 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             Cccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCcccce
Confidence            36999999986444444799999999999999999997743  25577889999999998876322 2223678999999


Q ss_pred             EEeeccCCccee--ecCCCCCC-ceEEEeecCCCceEee---eccceeeeEeeeec-ccceeeeccccccCceeEeeccC
Q 015001          191 LEIRSCEGLESL--DLVNLSNL-KEIILVNTSDIKRVEI---KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       191 L~l~~c~~~~~l--~i~~l~~L-~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~  263 (414)
                      +.+++|.....+  .+..+.++ +.+.+..+ .+.....   .......+++..+. ....+..+..+++|+.+++.++.
T Consensus       154 l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999998765333  23334454 67777665 2222211   22233445554443 23334556678889999988777


Q ss_pred             CchHHHHhhhccCCCCcEEecccccccccccc---cccccceEEeeccCCceEe
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV  314 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~  314 (414)
                      +... +. .+..+++|+.|+++++.....++.   .+++|++|++++|...+++
T Consensus       233 l~~~-~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~i  284 (313)
T d1ogqa_         233 LAFD-LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             ECCB-GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             cccc-cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccC
Confidence            6543 22 356678899999988754444443   6788999999887544444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.5e-10  Score=100.78  Aligned_cols=85  Identities=16%  Similarity=0.082  Sum_probs=40.4

Q ss_pred             ccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce-eecC
Q 015001          129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-LDLV  205 (414)
Q Consensus       129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~-l~i~  205 (414)
                      ..+|..+.  +++++|+|+++.+...  ..+..+++|++|+|++|.++.-  . ..+.+++|+.|++++|..... -.+.
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~-~~~~l~~L~~L~Ls~N~l~~~~~~~~   97 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--Q-VDGTLPVLGTLDLSHNQLQSLPLLGQ   97 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--E-CCSCCTTCCEEECCSSCCSSCCCCTT
T ss_pred             CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--c-cccccccccccccccccccccccccc
Confidence            34554332  4566677776655322  2345566666666665554211  1 123455555555555533211 1222


Q ss_pred             CCCCCceEEEeec
Q 015001          206 NLSNLKEIILVNT  218 (414)
Q Consensus       206 ~l~~L~~L~l~~~  218 (414)
                      .+++|+.|+++++
T Consensus        98 ~l~~L~~L~l~~~  110 (266)
T d1p9ag_          98 TLPALTVLDVSFN  110 (266)
T ss_dssp             TCTTCCEEECCSS
T ss_pred             ccccccccccccc
Confidence            3455555555544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.92  E-value=6e-10  Score=100.25  Aligned_cols=185  Identities=17%  Similarity=0.159  Sum_probs=88.1

Q ss_pred             CCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001          115 EVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  191 (414)
                      ++++|+++..  ...++|. .+..+++|++|+++++.+...  ..+..+++|++|++.++.+..-  .  ....+.++.|
T Consensus        32 ~l~~L~Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l--~--~~~~~~l~~L  105 (305)
T d1xkua_          32 DTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQEL  105 (305)
T ss_dssp             TCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCEE
T ss_pred             CCCEEECcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC--c--cchhhhhhhh
Confidence            5666665542  2334554 344556666666666654332  3355566666666666544210  0  0123344444


Q ss_pred             EeeccCC------------------------cce----eecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeeccc
Q 015001          192 EIRSCEG------------------------LES----LDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLF  242 (414)
Q Consensus       192 ~l~~c~~------------------------~~~----l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~  242 (414)
                      .+..+..                        ...    ..+..+++|+.+++.+| .+..+.. ..++|++|+++++...
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCC
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCcccCCccCEEECCCCcCC
Confidence            4433321                        100    01223456666666655 2222222 2456666666554411


Q ss_pred             c-eeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeecc
Q 015001          243 P-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECC  308 (414)
Q Consensus       243 ~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c  308 (414)
                      . ....+.+++.++.|+++++.+.... ...+..+++|+.|+|+++ .+..++   ..+++|++|++++|
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~-~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN  252 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred             CCChhHhhccccccccccccccccccc-cccccccccceeeecccc-cccccccccccccCCCEEECCCC
Confidence            1 1223455566666666665554321 123445666666666665 222332   24556666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.5e-09  Score=95.63  Aligned_cols=188  Identities=17%  Similarity=0.054  Sum_probs=120.1

Q ss_pred             CCcccEEEecCcccCCCCccccC-cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee-ecCCCCCCceEEE
Q 015001          138 VESLHVLELSYCKLQQPSENVKL-FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEIIL  215 (414)
Q Consensus       138 ~~~L~~L~L~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l-~i~~l~~L~~L~l  215 (414)
                      ..++.+++-++..+...+  ..+ ++|++|+|+++.++.-. ...+.++++|++|++++|.. ..+ ....+++|+.|++
T Consensus         9 ~~~~~~v~C~~~~L~~iP--~~lp~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~L   84 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALP--PDLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDL   84 (266)
T ss_dssp             STTCCEEECTTSCCSSCC--SCCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEEC
T ss_pred             cCCCeEEEccCCCCCeeC--cCcCcCCCEEECcCCcCCCcC-HHHhhccccccccccccccc-ccccccccccccccccc
Confidence            355666676666654321  223 57999999999874221 12357899999999999854 344 3456799999999


Q ss_pred             eecCCCce---EeeeccceeeeEeeeecccc-eeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccc
Q 015001          216 VNTSDIKR---VEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (414)
Q Consensus       216 ~~~~~l~~---~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  291 (414)
                      +++ .+..   .....++|+.|+++++.... ....+..+++++.|++.++.+..- .......+++|+.|+++++. +.
T Consensus        85 s~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l-~~~~~~~l~~l~~l~l~~N~-l~  161 (266)
T d1p9ag_          85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LT  161 (266)
T ss_dssp             CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CS
T ss_pred             ccc-cccccccccccccccccccccccccceeecccccccccccccccccccccee-ccccccccccchhccccccc-cc
Confidence            988 3322   22356888888888776222 223456678888888887776531 12334567888888888853 22


Q ss_pred             cc----cccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEeec
Q 015001          292 SV----RISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS  349 (414)
Q Consensus       292 ~l----~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~  349 (414)
                      .+    ...+++|++|++++|. +..++.                .+...++|+.|.++.|+
T Consensus       162 ~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~----------------~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         162 ELPAGLLNGLENLDTLLLQENS-LYTIPK----------------GFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC-CCCCCT----------------TTTTTCCCSEEECCSCC
T ss_pred             ccCccccccccccceeecccCC-CcccCh----------------hHCCCCCCCEEEecCCC
Confidence            22    2356778888887764 323321                22345678888888774

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.87  E-value=4.6e-09  Score=94.28  Aligned_cols=212  Identities=13%  Similarity=0.050  Sum_probs=115.5

Q ss_pred             ccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeec
Q 015001          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDL  204 (414)
Q Consensus       127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i  204 (414)
                      .-..+|..+.  +++++|++++|.+...  ..+..+++|++|+++++.+..-. ...+.+++.|+.|++.+|.. ..+..
T Consensus        21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~-~~~f~~l~~L~~L~l~~n~l-~~l~~   96 (305)
T d1xkua_          21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPE   96 (305)
T ss_dssp             CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCS
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccc-hhhhhCCCccCEecccCCcc-CcCcc
Confidence            3456776554  6899999999987543  35788999999999998873221 22367899999999999853 33333


Q ss_pred             CCCCCCceEEEeecCCCceEee----eccceeeeEeeeec---ccceeeeccccccCceeEeeccCCchHHHHhhhccCC
Q 015001          205 VNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTY---LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP  277 (414)
Q Consensus       205 ~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  277 (414)
                      ...+.++.|.+..+ .+..+..    ..+.+..+....+.   .......+..+++|+.+++.++.+..  +.  ...++
T Consensus        97 ~~~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~--~~~~~  171 (305)
T d1xkua_          97 KMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT--IP--QGLPP  171 (305)
T ss_dssp             SCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS--CC--SSCCT
T ss_pred             chhhhhhhhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc--cC--cccCC
Confidence            33467788877766 2222221    22334444443332   01111224445566666665555432  11  12345


Q ss_pred             CCcEEecccccccccc---cccccccceEEeeccCCceEe----eccCCCeeeEEEeCcee----EEeccCCccceEEEE
Q 015001          278 LLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI----SFSSNALSLSETSLC  346 (414)
Q Consensus       278 ~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~  346 (414)
                      +|+.|+++++......   ...++.++.|.+++|.. ..+    ....++|++|.+.++..    ..+.++++|+.|+++
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l-~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC-CEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccc-cccccccccccccceeeecccccccccccccccccCCCEEECC
Confidence            5666666554222111   12344555555555432 222    12334555555555543    234455666666665


Q ss_pred             ee
Q 015001          347 FS  348 (414)
Q Consensus       347 ~~  348 (414)
                      .+
T Consensus       251 ~N  252 (305)
T d1xkua_         251 NN  252 (305)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.3e-09  Score=95.39  Aligned_cols=201  Identities=15%  Similarity=0.071  Sum_probs=115.4

Q ss_pred             cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---
Q 015001          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---  202 (414)
Q Consensus       128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---  202 (414)
                      ...+|..+.  +++++|+|+++.+...  ..+..+++|++|+++++.+..... .....++.++.+.+..+.....+   
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccch
Confidence            345555443  5688999999877432  346778888888888877632211 12456777888777655544333   


Q ss_pred             ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeeccccee-eeccccccCceeEeeccCCchHHHHhhhccCC
Q 015001          203 DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP  277 (414)
Q Consensus       203 ~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  277 (414)
                      .+..+++|+.|++..+ .+..+.    ...++|+.+++.++....+. ..+..+++|++|+++++.+..- ....+..++
T Consensus       100 ~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l-~~~~f~~l~  177 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLH  177 (284)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred             hhcccccCCEEecCCc-ccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc-chhhhcccc
Confidence            3445678888888777 222221    13456777777666532222 2345566777777776665431 112345566


Q ss_pred             CCcEEeccccccccccc---ccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEeec
Q 015001          278 LLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS  349 (414)
Q Consensus       278 ~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~  349 (414)
                      +|+.+.++++......+   ..+++|++|+++++.... +               ....+.++++|++|+++.|+
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~-~---------------~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-L---------------PTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-C---------------CHHHHTTCTTCCEEECCSSC
T ss_pred             ccchhhhhhccccccChhHhhhhhhccccccccccccc-c---------------cccccccccccCEEEecCCC
Confidence            67777666643222111   244566666665543221 0               00355677888888888773

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=2.1e-10  Score=84.83  Aligned_cols=44  Identities=23%  Similarity=0.475  Sum_probs=38.6

Q ss_pred             CCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhccccce
Q 015001            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPD   51 (414)
Q Consensus         8 ~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~~~~   51 (414)
                      ..|.|+.||+||+.+||+||+.+|++++++|||+|+++..+-+.
T Consensus         2 k~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~   45 (100)
T d1nexb1           2 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS   45 (100)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSH
T ss_pred             CCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
Confidence            36999999999999999999999999999999999976544333

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1e-09  Score=81.55  Aligned_cols=41  Identities=29%  Similarity=0.424  Sum_probs=37.8

Q ss_pred             cCCCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhc
Q 015001            6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW   46 (414)
Q Consensus         6 ~~~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw   46 (414)
                      .-..|+|+.||+||+.+||+||+.+|++++++|||+|+.+.
T Consensus        13 ~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             hhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            44589999999999999999999999999999999999753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.78  E-value=1.6e-08  Score=92.14  Aligned_cols=225  Identities=19%  Similarity=0.160  Sum_probs=116.7

Q ss_pred             HHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCC-Ccc
Q 015001          110 LAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC-PLI  188 (414)
Q Consensus       110 ~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~-p~L  188 (414)
                      .+...++++|+++...  ...+|..   .++|++|+++++.+...+  ..+.+|+.|++.++..+.      +..+ +.|
T Consensus        34 ~c~~~~l~~LdLs~~~--L~~lp~~---~~~L~~L~Ls~N~l~~lp--~~~~~L~~L~l~~n~l~~------l~~lp~~L  100 (353)
T d1jl5a_          34 DCLDRQAHELELNNLG--LSSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA------LSDLPPLL  100 (353)
T ss_dssp             HHHHHTCSEEECTTSC--CSCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC------CCSCCTTC
T ss_pred             HHHHcCCCEEEeCCCC--CCCCCCC---CCCCCEEECCCCCCcccc--cchhhhhhhhhhhcccch------hhhhcccc
Confidence            3334477887776532  3356643   367888888887765322  234678888877766521      1223 357


Q ss_pred             cEEEeeccCCcceeecCCCCCCceEEEeecCCCceEee----------------------eccceeeeEeeeecccc---
Q 015001          189 EYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI----------------------KTSNVNALAIHQTYLFP---  243 (414)
Q Consensus       189 e~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~----------------------~~p~L~~L~l~~~~~~~---  243 (414)
                      ++|++++|....--....+++|+.|++.++ .+.....                      ..+.++.+.+.++....   
T Consensus       101 ~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             ccccccccccccccchhhhccceeeccccc-cccccccccccccchhhccccccccccccccccceeccccccccccccc
Confidence            888887775332113345677777777766 1111110                      23445555554332000   


Q ss_pred             ----------------eeeeccccccCceeEeeccCCchHH---------------HHhhhccCCCCcEEecccc--c--
Q 015001          244 ----------------IEVNVSSCGNLKCLKFDFLPIEDEW---------------LCNGISKLPLLEYLSMTKC--H--  288 (414)
Q Consensus       244 ----------------~~~~~~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~~L~~L~l~~c--~--  288 (414)
                                      .......++.|+.+++.++......               +.......+.+....+...  .  
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  259 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL  259 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                            0111334567777777654432100               0000001112222222210  0  


Q ss_pred             ---------------ccccccccccccceEEeeccCCceEeeccCCCeeeEEEeCcee-EEeccCCccceEEEEeec
Q 015001          289 ---------------KLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFSS  349 (414)
Q Consensus       289 ---------------~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~-~~~~~~~~L~~L~l~~~~  349 (414)
                                     .+..+...+++|++|++++|. +.+++...++|+.|.+.++.. ..-..+++|++|+++.++
T Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNP  335 (353)
T ss_dssp             SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             ccccchhcccccccCccccccccCCCCCEEECCCCc-cCccccccCCCCEEECCCCcCCccccccCCCCEEECcCCc
Confidence                           011122235788999998874 445666678888888887765 222234678988887773

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.8e-09  Score=94.77  Aligned_cols=192  Identities=15%  Similarity=0.096  Sum_probs=124.5

Q ss_pred             CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  190 (414)
                      .++++|+|+..  ...++|. .+..+++|++|+++++.+...  .....++.++.+...............+.++++|++
T Consensus        32 ~~~~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCC--cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            47788887653  3345665 456789999999998876432  445556777776654332211111223567899999


Q ss_pred             EEeeccCCcc--eeecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeeccC
Q 015001          191 LEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLP  263 (414)
Q Consensus       191 L~l~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~  263 (414)
                      |++++|....  .......++|+.+++.++ .+..+..    ..++|+.|+++++....+ ...+.++++|+.+++.++.
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcccccccccccchhcccchhhhccc-cccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            9998886432  113334678899998887 4444432    467889999888763322 2346778899999998888


Q ss_pred             CchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccC
Q 015001          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCD  309 (414)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~  309 (414)
                      +..- .+..+..+++|++|+++.+.....   ....+++|++|++++++
T Consensus       189 l~~i-~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         189 VAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCEE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccc-ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            7642 234467788999999988533222   12367788888887753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.5e-09  Score=87.85  Aligned_cols=125  Identities=15%  Similarity=0.102  Sum_probs=63.1

Q ss_pred             ccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceE
Q 015001          135 IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI  213 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L  213 (414)
                      +.++.++++|+|++|.+... .....+++|+.|+|++|.+..-  . -++.+                      ++|+.|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~-~~~~l----------------------~~L~~L   68 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--D-GFPLL----------------------RRLKTL   68 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--C-CCCCC----------------------SSCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--C-CcccC----------------------cchhhh
Confidence            34556677777777766543 2234455566666655544210  0 02334                      444444


Q ss_pred             EEeecCCCceEee----eccceeeeEeeeecccce--eeeccccccCceeEeeccCCchHH--HHhhhccCCCCcEEecc
Q 015001          214 ILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMT  285 (414)
Q Consensus       214 ~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~  285 (414)
                      ++++| .+..+..    .+|+|+.|+++++....+  ...+..+++|++|++.++.+....  -...+..+|+|+.|+-.
T Consensus        69 ~ls~N-~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          69 LVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ECCSS-CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             hcccc-cccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            44444 2333221    345555555555441111  123556677777777777654321  12345667777777643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=1.6e-09  Score=99.27  Aligned_cols=97  Identities=20%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             hhhHHHHHHHHHh-CCCeEEEEEecCCc---cccCCccccCCCcccEEEecCcccCCC------------CccccCcccc
Q 015001          101 ASLAGRCLGLAIE-SEVKELVLVHWRSE---RRNLPEIIFYVESLHVLELSYCKLQQP------------SENVKLFSLR  164 (414)
Q Consensus       101 ~~~i~~~l~~~~~-~~l~~L~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~------------~~~~~l~~L~  164 (414)
                      ...++.++..... ..+++|+|+.....   ...+-..+...++|+.|+++++.....            .....+++|+
T Consensus        17 ~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~   96 (344)
T d2ca6a1          17 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   96 (344)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcc
Confidence            4445555544432 46777776542111   112223344567777777776543211            1123456677


Q ss_pred             eeEeeEEEcChH---HHHHHHhCCCcccEEEeeccC
Q 015001          165 KLALREVCADDQ---AIASLISGCPLIEYLEIRSCE  197 (414)
Q Consensus       165 ~L~L~~~~~~~~---~l~~ll~~~p~Le~L~l~~c~  197 (414)
                      .|+|++|.+++.   .+...+..+++|++|.+.+|.
T Consensus        97 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          97 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccccccccccchhhhhcccccchheeccccc
Confidence            777777766333   344445566777777777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=6.6e-09  Score=79.90  Aligned_cols=120  Identities=18%  Similarity=0.175  Sum_probs=64.4

Q ss_pred             cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecCCC
Q 015001          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDI  221 (414)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l  221 (414)
                      +.|+++++.+...+....+++|++|++++|.++.  +...+..+++|+.|++++|....--.+..+++|+.|+++++ .+
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N-~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN-RL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS-CC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccccccCeEECCCC-cc
Confidence            4577777777655566777778888887777632  21225567777777777764321112334455555555444 11


Q ss_pred             ceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHH--HHhhhccCCCCcEE
Q 015001          222 KRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYL  282 (414)
Q Consensus       222 ~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L  282 (414)
                      ..+                  +....+..+++|+.|+++++.+....  ...+...+|+|+.|
T Consensus        78 ~~~------------------~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQS------------------AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSS------------------STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCC------------------CCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            110                  00113455666777777666654311  12234446666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.60  E-value=8e-10  Score=92.73  Aligned_cols=80  Identities=19%  Similarity=0.115  Sum_probs=51.7

Q ss_pred             CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEee
Q 015001          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (414)
Q Consensus       115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~  194 (414)
                      ..+.+++....+....++..+..+++|++|+++++.+...+....+++|++|+|++|.++.  +..+...+++|++|++.
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECS
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--ccccccccccccccccc
Confidence            4455555543344455666777788888888888877655566778888888888887732  11122334566777766


Q ss_pred             cc
Q 015001          195 SC  196 (414)
Q Consensus       195 ~c  196 (414)
                      +|
T Consensus       102 ~N  103 (198)
T d1m9la_         102 YN  103 (198)
T ss_dssp             EE
T ss_pred             cc
Confidence            65

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.8e-08  Score=83.72  Aligned_cols=175  Identities=16%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             cCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceee---c
Q 015001          130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---L  204 (414)
Q Consensus       130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~---i  204 (414)
                      .+|..+.  +++++|+++++.+...  ..+.++++|++|+++++.+....-...+.+++.++++.+..+.......   +
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            4555443  4677777777766422  3356677777777777655221111124567777777776655443332   3


Q ss_pred             CCCCCCceEEEeecCCCceEee--eccceeeeEe---eeecccce-eeecccc-ccCceeEeeccCCchHHHHhhhccCC
Q 015001          205 VNLSNLKEIILVNTSDIKRVEI--KTSNVNALAI---HQTYLFPI-EVNVSSC-GNLKCLKFDFLPIEDEWLCNGISKLP  277 (414)
Q Consensus       205 ~~l~~L~~L~l~~~~~l~~~~~--~~p~L~~L~l---~~~~~~~~-~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~  277 (414)
                      .++++|+.|.+.++ .+.....  ...+++.+..   .......+ ...+.++ ..++.|++.++.+..  +.......+
T Consensus       100 ~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~--i~~~~~~~~  176 (242)
T d1xwdc1         100 QNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNCAFNGT  176 (242)
T ss_dssp             ECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTTTTTC
T ss_pred             cccccccccccchh-hhcccccccccccccccccccccccccccccccccccccccceeeecccccccc--cccccccch
Confidence            44677777777776 2322221  2223333332   22111111 1122223 366677776666543  111122334


Q ss_pred             CCcEEeccccccccccc----ccccccceEEeeccC
Q 015001          278 LLEYLSMTKCHKLTSVR----ISSPCLKTLILECCD  309 (414)
Q Consensus       278 ~L~~L~l~~c~~~~~l~----~~~~~L~~L~l~~c~  309 (414)
                      +++.+....+..++.++    ..+++|+.|+++++.
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            55555443433444443    256777777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.50  E-value=1.7e-08  Score=92.09  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=47.9

Q ss_pred             ccCCCcccEEEecCcccCCC------CccccCcccceeEeeEEEcChHHHHHH------------HhCCCcccEEEeecc
Q 015001          135 IFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQAIASL------------ISGCPLIEYLEIRSC  196 (414)
Q Consensus       135 ~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l~~l------------l~~~p~Le~L~l~~c  196 (414)
                      +..+++|++|++++|.+...      ......++|+.|+++++.+++.....+            ....+.|+.|.+.++
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            44567888888888766543      123456788888888877644332221            235667777777665


Q ss_pred             CCcce----e--ecCCCCCCceEEEeec
Q 015001          197 EGLES----L--DLVNLSNLKEIILVNT  218 (414)
Q Consensus       197 ~~~~~----l--~i~~l~~L~~L~l~~~  218 (414)
                      .....    +  .+...++|+.|++..|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n  196 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQN  196 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             cccccccccccchhhhhhhhcccccccc
Confidence            33210    0  1222456666666655

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.3e-07  Score=81.36  Aligned_cols=188  Identities=15%  Similarity=0.098  Sum_probs=113.6

Q ss_pred             CCCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHHHHHhCCCccc
Q 015001          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (414)
Q Consensus       114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  189 (414)
                      +++++|++....  ...+|.. +..+++|++|+++++.+...   ..+..+++++.+.+..+..........+..+++|+
T Consensus        29 ~~l~~L~Ls~n~--i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCC--CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcCCc--CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            589999998632  3456664 56789999999999876432   44667889999988654321111223367899999


Q ss_pred             EEEeeccCCcceeecCCCCCCceEEEeec--CCCceEeee-----ccceeeeEeeeecccceeeeccccccCceeEe-ec
Q 015001          190 YLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIK-----TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKF-DF  261 (414)
Q Consensus       190 ~L~l~~c~~~~~l~i~~l~~L~~L~l~~~--~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l-~~  261 (414)
                      +|.+.++.....-....+++++.+.....  ..+..+...     .+.++.+.+.++....+.......++++++.. .+
T Consensus       107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN  186 (242)
T ss_dssp             EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccc
Confidence            99999985433222333455666654433  244444432     24677788877653333333334556655543 45


Q ss_pred             cCCchHHHHhhhccCCCCcEEecccccccccccc-cccccceEEe
Q 015001          262 LPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLIL  305 (414)
Q Consensus       262 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~-~~~~L~~L~l  305 (414)
                      +.+..- -...+..+++|+.|+++++. +..++. .+.+|+.|..
T Consensus       187 n~l~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         187 NNLEEL-PNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             TTCCCC-CTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEES
T ss_pred             cccccc-cHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCccccc
Confidence            555431 12235778999999999853 444433 4455555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.48  E-value=3.9e-07  Score=82.56  Aligned_cols=70  Identities=21%  Similarity=0.207  Sum_probs=49.3

Q ss_pred             ccCCCCcEEecccccccccccccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccC-CccceEEE
Q 015001          274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNA-LSLSETSL  345 (414)
Q Consensus       274 ~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~-~~L~~L~l  345 (414)
                      ..+++|++|++++| .+..++..+++|+.|++++|. +++++-..++|+.|.+.++....+... ++|++|.+
T Consensus       281 ~~~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~L~~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         281 DLPPSLEELNVSNN-KLIELPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM  351 (353)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             ccCCCCCEEECCCC-ccCccccccCCCCEEECCCCc-CCccccccCCCCEEECcCCcCCCCCccccccCeeEC
Confidence            44678999999887 355666778899999998774 455555556888888888766333333 46777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.2e-08  Score=93.38  Aligned_cols=100  Identities=18%  Similarity=-0.016  Sum_probs=59.9

Q ss_pred             cccCceeEeeccCCchHHHHhhh----ccCCCCcEEecccccccc-------cccccccccceEEeeccCCce----Ee-
Q 015001          251 CGNLKCLKFDFLPIEDEWLCNGI----SKLPLLEYLSMTKCHKLT-------SVRISSPCLKTLILECCDKLI----QV-  314 (414)
Q Consensus       251 ~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~c~~~~-------~l~~~~~~L~~L~l~~c~~l~----~~-  314 (414)
                      .+.++.++++++.+.+.....+.    ...+.|+.+.++.|....       ......++|++|++++|..-.    .+ 
T Consensus       282 ~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~  361 (460)
T d1z7xw1         282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC  361 (460)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhh
Confidence            45666666666666554433221    234567888877753221       122245678999988875321    11 


Q ss_pred             ---eccCCCeeeEEEeCcee---------EEeccCCccceEEEEeecc
Q 015001          315 ---EIETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFSSH  350 (414)
Q Consensus       315 ---~~~~p~L~~l~~~~~~~---------~~~~~~~~L~~L~l~~~~~  350 (414)
                         ....+.|+.|.+.++..         ..+...++|++|+++.+..
T Consensus       362 ~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             hhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcC
Confidence               12345688888888765         2345568899999987743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.3e-07  Score=76.03  Aligned_cols=80  Identities=14%  Similarity=0.196  Sum_probs=47.3

Q ss_pred             CCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeee-ccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001          207 LSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (414)
Q Consensus       207 l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  283 (414)
                      +++|+.|+++++ .+..+.  ..+++|++|+++++....+... +..+++|++|++.++.+.+-.-...+..+++|++|+
T Consensus        40 l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~  118 (162)
T d1a9na_          40 LDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  118 (162)
T ss_dssp             TTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             cccCCEEECCCC-CCCccCCcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhh
Confidence            455555555555 333332  1467788888877763333222 345778888888777765422112356677777777


Q ss_pred             cccc
Q 015001          284 MTKC  287 (414)
Q Consensus       284 l~~c  287 (414)
                      ++++
T Consensus       119 l~~N  122 (162)
T d1a9na_         119 ILRN  122 (162)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            7775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.44  E-value=6.4e-09  Score=87.07  Aligned_cols=108  Identities=17%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             ccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeE
Q 015001          156 ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALA  235 (414)
Q Consensus       156 ~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~  235 (414)
                      ....+++|++|+|+++.++.-  . -+..+++|+.|++++|.. .                   .+..+....++|+.|+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i--~-~l~~l~~L~~L~Ls~N~i-~-------------------~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI--S-SLSGMENLRILSLGRNLI-K-------------------KIENLDAVADTLEELW   99 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC--C-CHHHHTTCCEEECCEEEE-C-------------------SCSSHHHHHHHCCEEE
T ss_pred             HHhcccccceeECcccCCCCc--c-cccCCccccChhhccccc-c-------------------cccccccccccccccc
Confidence            345566777777777766321  1 134556666666665521 1                   1111111234566666


Q ss_pred             eeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001          236 IHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       236 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  287 (414)
                      ++++....+ ..+..+++|+.|+++++.+.+-.-...+..+++|+.|+++++
T Consensus       100 l~~N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         100 ISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             CSEEECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccc-ccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence            655542221 124556667777776666654322223566677777777663

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.4e-08  Score=77.25  Aligned_cols=38  Identities=37%  Similarity=0.604  Sum_probs=35.0

Q ss_pred             CCccCCCCC----HHHHHHHhccCChHHHHHhhhcccCchhh
Q 015001            8 EVDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (414)
Q Consensus         8 ~~D~i~~LP----deiL~~Ils~L~~~d~~~~~~VskrW~~l   45 (414)
                      ..|+|+.||    |||+.+||+||+.+|++++++|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            468999999    59999999999999999999999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=1.9e-07  Score=71.39  Aligned_cols=58  Identities=14%  Similarity=0.111  Sum_probs=34.3

Q ss_pred             ccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001          228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  286 (414)
                      +++|+.|+++++....++ .+..+++|++|+++++.+..-.....+..+++|+.|++++
T Consensus        42 l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          42 LRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             hhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            455555555555422222 3567777777777777765422222356677777777776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=8.3e-07  Score=83.28  Aligned_cols=108  Identities=13%  Similarity=0.186  Sum_probs=73.0

Q ss_pred             CeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCcc---ccCCccccCCCcccEEEecCcccCCC------
Q 015001           84 SIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP------  154 (414)
Q Consensus        84 ~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------  154 (414)
                      .++.+.++...    .....+..++  ...++++.|+|..+.-..   ..+...+..+++|++|+|++|.+...      
T Consensus         3 ~l~~ld~~~~~----i~~~~~~~l~--~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQCEE----LSDARWAELL--PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEESCC----CCHHHHHHHH--HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCEEEeeCCc----CChHHHHHHH--HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence            46676665432    2333444444  335799999999864322   23455567889999999999876421      


Q ss_pred             Ccc-ccCcccceeEeeEEEcChHH---HHHHHhCCCcccEEEeeccC
Q 015001          155 SEN-VKLFSLRKLALREVCADDQA---IASLISGCPLIEYLEIRSCE  197 (414)
Q Consensus       155 ~~~-~~l~~L~~L~L~~~~~~~~~---l~~ll~~~p~Le~L~l~~c~  197 (414)
                      ... ...++|++|+|++|.+++..   +...+..+++|++|++.+|.
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            111 22357999999999986654   44456789999999998874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.01  E-value=2.1e-06  Score=70.86  Aligned_cols=88  Identities=19%  Similarity=0.166  Sum_probs=49.7

Q ss_pred             ccccCCccccCCCcccEEEecCcccCC-C--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee-
Q 015001          127 ERRNLPEIIFYVESLHVLELSYCKLQQ-P--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-  202 (414)
Q Consensus       127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~-~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l-  202 (414)
                      ....+|..+.  +++++|+|+++.+.. .  ..+..+++|+.|+|+++.+.... ...+...++|++|++++|... .+ 
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~l~-~l~   94 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIK-EIS   94 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCC-EEC
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeecccccc-ccC
Confidence            3345665443  577788888876632 2  44566777777777776652211 122445667777777766332 22 


Q ss_pred             --ecCCCCCCceEEEeec
Q 015001          203 --DLVNLSNLKEIILVNT  218 (414)
Q Consensus       203 --~i~~l~~L~~L~l~~~  218 (414)
                        .+.++++|+.|+++++
T Consensus        95 ~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             SSSSTTCTTCCEEECCSS
T ss_pred             HHHHhCCCcccccccCCc
Confidence              2334555666655555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.01  E-value=3e-06  Score=69.89  Aligned_cols=123  Identities=13%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             ccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001          141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT  218 (414)
Q Consensus       141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~  218 (414)
                      .+.++.++..+...+.. -.+++++|+|+++.++.......+..+++|++|++.++......  .+..+++|+.|+++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~-lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCCcCccCCC-CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            35666666665432211 13689999999998843222333577899999999888654221  3445789999999998


Q ss_pred             CCCceEee----eccceeeeEeeeeccccee-eeccccccCceeEeeccCCc
Q 015001          219 SDIKRVEI----KTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIE  265 (414)
Q Consensus       219 ~~l~~~~~----~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  265 (414)
                       .+..+..    ..++|++|+++++....++ ..+..+++|++|+++++.+.
T Consensus        89 -~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             -cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence             5655543    5789999999998743332 24678899999999887754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00018  Score=56.62  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=25.7

Q ss_pred             CCCCceEEEeecCCCceEee----eccceeeeEeeeecccceeeeccccccCceeEeeccCC
Q 015001          207 LSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (414)
Q Consensus       207 l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  264 (414)
                      +++|+.|+++++ .+..+..    ..++|++|+++++....++...-...+|++|+++++.+
T Consensus        55 l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          55 LGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccccCcceeecc-ccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            445555555444 3333321    23455555555544222222222233566666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.16  E-value=0.00014  Score=57.97  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=22.0

Q ss_pred             HHHHHHhCCCcccEEEeeccCCcce-----e--ecCCCCCCceEEEeec
Q 015001          177 AIASLISGCPLIEYLEIRSCEGLES-----L--DLVNLSNLKEIILVNT  218 (414)
Q Consensus       177 ~l~~ll~~~p~Le~L~l~~c~~~~~-----l--~i~~l~~L~~L~l~~~  218 (414)
                      .+..+..++|.|++|+|+++..+..     +  .+...++|++|++++|
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            4555556666677776665433311     1  2333355666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00033  Score=55.07  Aligned_cols=66  Identities=18%  Similarity=0.066  Sum_probs=29.3

Q ss_pred             cCCccccCCCcccEEEecCcc-cCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeecc
Q 015001          130 NLPEIIFYVESLHVLELSYCK-LQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC  196 (414)
Q Consensus       130 ~lp~~~~~~~~L~~L~L~~~~-~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c  196 (414)
                      ..|..+...++|++|++.++. +...  ..+..+++|+.|+|+++.++.-. ...+..+++|++|+|++|
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSS
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCC
Confidence            444444455566666665432 3211  23444555555555555442111 111334445555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.47  E-value=0.00046  Score=54.77  Aligned_cols=39  Identities=21%  Similarity=0.194  Sum_probs=19.9

Q ss_pred             ccccccCceeEee--ccCCchHH---HHhhhccCCCCcEEeccc
Q 015001          248 VSSCGNLKCLKFD--FLPIEDEW---LCNGISKLPLLEYLSMTK  286 (414)
Q Consensus       248 ~~~~~~L~~L~l~--~~~~~~~~---~~~~~~~~~~L~~L~l~~  286 (414)
                      +...++|+.++|.  ++.+.++.   +...+..+++|++|+++.
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3445566654443  34444432   333445566666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.83  E-value=0.0012  Score=52.25  Aligned_cols=14  Identities=7%  Similarity=0.223  Sum_probs=6.9

Q ss_pred             CCcccEEEecCccc
Q 015001          138 VESLHVLELSYCKL  151 (414)
Q Consensus       138 ~~~L~~L~L~~~~~  151 (414)
                      .++|++|++++|.+
T Consensus        43 n~~L~~L~Ls~n~l   56 (167)
T d1pgva_          43 SKHIEKFSLANTAI   56 (167)
T ss_dssp             CSCCCEEECTTSCC
T ss_pred             CCccceeecccccc
Confidence            44455555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.00059  Score=53.87  Aligned_cols=59  Identities=22%  Similarity=0.115  Sum_probs=33.5

Q ss_pred             CCcccEEEecCcccCCC----CccccCcccceeEeeEEEcC-hHHHHHHHhCCCcccEEEeeccCC
Q 015001          138 VESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCAD-DQAIASLISGCPLIEYLEIRSCEG  198 (414)
Q Consensus       138 ~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~~p~Le~L~l~~c~~  198 (414)
                      +++|++|++++|.+...    .....+++|+.|+|++|.++ ...+.. + ..+.|++|.+.+|+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl  127 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCc
Confidence            56677777777665432    12345667777777777662 233332 2 334567777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0021  Score=50.59  Aligned_cols=20  Identities=10%  Similarity=0.167  Sum_probs=14.5

Q ss_pred             HHHHHhCCCcccEEEeeccC
Q 015001          178 IASLISGCPLIEYLEIRSCE  197 (414)
Q Consensus       178 l~~ll~~~p~Le~L~l~~c~  197 (414)
                      +..+...+|+|++|++++|.
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~   76 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNR   76 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSC
T ss_pred             hHHHHHhCCCCCEeeCCCcc
Confidence            34445678888888888874

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.37  E-value=0.0097  Score=46.64  Aligned_cols=39  Identities=13%  Similarity=-0.007  Sum_probs=20.4

Q ss_pred             cccccCceeEeeccCCchHH---HHhhhccCCCCcEEecccc
Q 015001          249 SSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKC  287 (414)
Q Consensus       249 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c  287 (414)
                      ...++|++|+++++.+++..   +...+...+.++.+++++|
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            34556666666666555432   2233344555666665554