Citrus Sinensis ID: 015025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHIIDF
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccEEEEEcEEEcccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEEcccccEEEEEcccccEEEEEEEEccccEEEEEEcccEEEEEEEEccccccEEEEEcccccEEEEEEEccccccHHHHHHccccccccEEEEEcEEcccEEEEEcccEEEEEEEccccccccccccccccccccccccccEEEcccccccEEccccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHcccccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccHEEEcccEEEEEEEEEEccccccccccHHHHEEEEEEEEEcHHHHHHHHHcccHHHEEEEEEcccccEEEEEEcccEEEEEEEcccccccEEEEEcccEEEEEEEccccccccEEEEcccHHHEEEcccccccccHccccccccccccHHHHHccccccEEEEEcccEEEEEEEcccccccHHHHcccccEEEEEEcccccHHHccccccccccccHHHHHHccEEEEEEcccccHHHHHHHHHHHHHHHHHHEEEEEcc
Coil and Loop (DISEMBL)
MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVsfpildfdqnyffpgasrldygsfcvrkqnysFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFldvkgsapiVDRWIRLAVENGvreldfenitdentvytlpqaifSANSVTNLRLVWCRleqpfdsimlcsLKKLTLERVCLDEQMVQKLAsecplledlcfsncwglkhlCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLfygarrprvvevarsphlkkldlVSVYFADNEfnhliskfpsledlfvtrcclpgkikisSNQLKNLLFRSCKYlkvidvdapnlllftyefnpipiisinvpcpwkvsfvckgvlnthwYLKLKKFLGVSKQIESLKLSLystkvcykihiidf
Flexible Loop (DISEMBL)
MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEvarsphlkklDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESlklslystkvcykIHIIDF
Low Complexity Region (SEG)
MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKimeirsfseeieiveisVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHIIDF
Disordered region (IsUnstruct)
*****VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHII**
Disordered Region (DISOPRED)
*****VA*DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHIIDF
Disordered Region (DISEMBL)
MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHIIDF
Disordered Region (DISPRO)
*******MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP************RKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHIIDF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHIIDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q9FJ30	540	Putative F-box/LRR-repeat	yes	no	0.526	0.403	0.296	3e-18
Q9LX48	491	Putative F-box/LRR-repeat	no	no	0.516	0.435	0.337	2e-16
Q9LXR6	457	Putative F-box protein At	no	no	0.531	0.481	0.325	2e-15
Q9LX51	520	F-box/LRR-repeat protein	no	no	0.495	0.394	0.321	2e-15
Q8H1M0	442	F-box/FBD/LRR-repeat prot	no	no	0.601	0.563	0.280	2e-15
Q9LX47	504	Putative F-box/FBD/LRR-re	no	no	0.475	0.390	0.318	3e-15
Q8L7H1	381	F-box/LRR-repeat protein	no	no	0.734	0.797	0.278	4e-15
Q94B46	468	F-box/LRR-repeat protein	no	no	0.739	0.653	0.277	5e-15
Q9FNI8	466	FBD-associated F-box prot	no	no	0.439	0.390	0.290	8e-15
Q9LXJ6	456	F-box/FBD/LRR-repeat prot	no	no	0.492	0.447	0.307	1e-14

>sp|Q9FJ30|FBL88_ARATH Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana GN=At5g41840 PE=4 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 45/263 (17%)

Query: 6   VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN-YFFPGASR 64
           V+ DRIS LP  +I H++S+L  KE A T+VL+K+W  L    P L+FD + YF P A R
Sbjct: 11  VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARR 70

Query: 65  LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 124
             Y            S++ + FM FVD+ L    K K  +++F +     DV   + +++
Sbjct: 71  NKY------------SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVLE 116

Query: 125 RWIRLAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRL-----VWCRLEQ 174
            WI   ++ GV ++D       N  + ++ Y+LP  IF + ++  L++     V   +E 
Sbjct: 117 -WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE- 174

Query: 175 PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM 234
               + L  LK L L+   ++  M+ KL S C  LE+L  +N                +M
Sbjct: 175 --GGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLAN----------------LM 216

Query: 235 EIRSFSEEIEIVEISVPSLQQLT 257
              S  +E   V +S+P+L++L 
Sbjct: 217 WADSSEDEACHVSVSIPTLKRLN 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX48|FBL66_ARATH Putative F-box/LRR-repeat protein At3g59230 OS=Arabidopsis thaliana GN=At3g59230 PE=4 SV=1

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/243 (33%), Positives = 111/243 (45%), Gaps = 29/243 (11%)

Query: 9   DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 68
           D I+ LP  +I+H++S+LS KE A TS+LS+KW   +   P LDFD     P   + D G
Sbjct: 12  DIINSLPEALIYHILSFLSTKEAAITSLLSRKWRYFFAFVPNLDFDD----PVRMQPDMG 67

Query: 69  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 128
                  N   +E    FMDFVD  L    +    + KF L      V G    V RWI 
Sbjct: 68  -------NQEETEIHTSFMDFVDRVLA--LRGNSHVNKFSLKCGN-GVDGVG--VTRWIL 115

Query: 129 LAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLR------LVWCRLEQPFDSIMLC 182
             +E  V ELD    +D  T Y  P  +F + S+  LR      L +  L      + L 
Sbjct: 116 NTLELSVSELDLSIASD--TTYLFPSKVFVSKSLVRLRIEARNGLAFGSLVIDVGDVSLP 173

Query: 183 SLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSN-CWGLKHLCVSKASKLKIMEIRSF 239
            LK L L+ V LD Q++   KL S C +LE+L   +  W     C +    LK +    F
Sbjct: 174 KLKTLYLDSVELDYQIICLAKLLSGCHVLEELVMIDVVWNFWESCSASIPTLKRLTF--F 231

Query: 240 SEE 242
           +EE
Sbjct: 232 TEE 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR6|FB207_ARATH Putative F-box protein At3g58860 OS=Arabidopsis thaliana GN=At3g58860 PE=4 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 119/255 (46%), Gaps = 35/255 (13%)

Query: 8   MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASRLD 66
           MD  S+LP  +I H++S L  KE A TSVL+KKW  L+   P LDF D ++  P   + +
Sbjct: 6   MDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGKRE 65

Query: 67  YGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GSAPI-VD 124
                           ++ FMDFVD  L    +    I+KF      L+VK G  P  VD
Sbjct: 66  KDGI------------LRSFMDFVDRVLA--LQGASPIKKFS-----LNVKTGVDPDRVD 106

Query: 125 RWIRLAVENGVREL----DFENITDENTVYTLPQAIFSANSVTNLRLVW-CRLEQPFDSI 179
           RWI   ++ GV  L    DFE        Y+LP  I  + ++  L+  +   L    D +
Sbjct: 107 RWICNVLQRGVSHLALFMDFEE------EYSLPYEISVSKTLVELKTGYGVDLYLWDDDM 160

Query: 180 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKASKLKIMEIRS 238
            L  LK L LE V       Q L   CP+LE+L   N  W  +++ +S +S LK ++I S
Sbjct: 161 FLPMLKTLVLESVEFGRGQFQTLLPACPVLEELMLLNMEWKDRNVILS-SSSLKNLKITS 219

Query: 239 FSEEIEIVEISVPSL 253
               +  +    P+L
Sbjct: 220 EDGCLGTLSFDTPNL 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 104/233 (44%), Gaps = 28/233 (12%)

Query: 6   VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRL 65
           V+ DRIS LP  ++ H++S+L  KE A TSVLSKKW  L+     LDFD + +  G  + 
Sbjct: 4   VSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGKPKS 63

Query: 66  DYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR 125
           D              E  + FM+FVD  L    +    + KF L  +  DV  +   V  
Sbjct: 64  DV-------------ELSRSFMEFVDRVLA--LQGNGSVNKFSLECSNYDVDLAR--VTG 106

Query: 126 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR---LEQPFDSIMLC 182
           WI   +  GV ELD   +      Y LP  IF + ++  L+L       L      + L 
Sbjct: 107 WILNVLGRGVSELDLSILE-----YPLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLP 161

Query: 183 SLKKLTLERVCLDEQMVQ--KLASECPLLEDLCFSN-CWGLKHLCVSKASKLK 232
            LK L ++ V + E+     KL S CP+LE+L   N  W     C      LK
Sbjct: 162 KLKTLYIDCVDVQERGFGFVKLLSGCPVLEELVLMNIGWENWKFCSVSVKTLK 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1M0|FDL16_ARATH F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 137/296 (46%), Gaps = 47/296 (15%)

Query: 9   DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 68
           DRI ELP  ++  ++SYL   +  +TSVLSK+W  L++  P+LD   +  FP     +Y 
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLDLKVSD-FPDE---NYA 59

Query: 69  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 128
           SF            +  F++F   S +R  KLK+   ++    T+ D + +      W+ 
Sbjct: 60  SF------------IDNFLEFNRKSRMRKFKLKY--DEY----TYDDDRLAG-----WVV 96

Query: 129 LAVENGVRELDFENITDENTVYT-LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 187
             V+ G++ LD +       V   +PQ I+  N++ +L LV   +E P   + L SLK +
Sbjct: 97  TTVDRGIQHLDAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPEFVVSLPSLKIM 156

Query: 188 TLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEI 245
            LE V    D  +++K+ S CP+LED          +L V +  +++ + +RSF    E 
Sbjct: 157 HLEDVWYYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSFRLTFEY 216

Query: 246 --------VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFN 293
                   VEI  P L+ L    +   +   + V     L  +D+      D+EFN
Sbjct: 217 SVSCTYFSVEIDAPRLEYLN---FNDDQSDTIVVKNMTSLSMIDI------DSEFN 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX47|FDL46_ARATH Putative F-box/FBD/LRR-repeat protein At3g59240 OS=Arabidopsis thaliana GN=At3g59240 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 48/245 (19%)

Query: 1   MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP 60
           MD+ +   D IS+LP  +I HL+S++  KE A TS+LS+KW  L+   PILDFD + +  
Sbjct: 1   MDD-ICCKDIISDLPEALICHLLSFVPTKEAALTSLLSEKWRYLFAFAPILDFDDSVWM- 58

Query: 61  GASRLDYGSFCVRKQNYSFSETVKKFMDFVD--------ASLVRFC-KLKFCIQKFRLFL 111
             S L Y            +E  +KFMDFVD        ++LVRF    +  I +  +F 
Sbjct: 59  -QSPLVY-----------MNEVHRKFMDFVDRVLGLQGNSTLVRFSLNCRNGIDRECIF- 105

Query: 112 TFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR 171
                        RWI   +E GV +LD       N   ++P ++F + S+  LR+   R
Sbjct: 106 -------------RWISNVIERGVSDLDLGGNFVSNR--SMPSSVFVSKSLVKLRI---R 147

Query: 172 LEQ----PFDSIMLCSLKKLTLERVCL--DEQMVQKLASECPLLEDLCFSNCWGLKHLCV 225
            E       + + L  LK L L  +     +  + KL S C +LEDL  S+ W   +   
Sbjct: 148 TENCTIIDLEDVFLPKLKTLDLSSIWFRDGDTCLLKLISGCQVLEDLTMSDLWWDGYWNR 207

Query: 226 SKASK 230
           S +SK
Sbjct: 208 SMSSK 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7H1|FBL75_ARATH F-box/LRR-repeat protein At4g14103 OS=Arabidopsis thaliana GN=At4g14103 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 153/370 (41%), Gaps = 66/370 (17%)

Query: 7   AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLD 66
           + D IS LP  I  H++S+L  KE A TSVLSKKW  L+   P LD D + +    +   
Sbjct: 6   SRDVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENE-- 63

Query: 67  YGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI-VDR 125
                        +E    FMDFVD  L    +    + KF L +      G  P+ +  
Sbjct: 64  -------------TEISTSFMDFVDRVLA--LQGNSPLHKFSLKIG----DGIDPVRIIP 104

Query: 126 WIRLAVENGVRELDFE-NITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF------DS 178
           WI   +E GV +LD   N+  E   + LP  ++   +     LVW +L          + 
Sbjct: 105 WINNVLERGVSDLDLHLNLESE---FLLPSQVYLCKT-----LVWLKLRFGLYPTIDVED 156

Query: 179 IMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSN----CWGLKHLCVSKASKLK 232
           + L  LK L +E    +E  V   KL S CP+LEDL   +     W    + V    +L+
Sbjct: 157 VHLPKLKTLYIEATHFEEHGVGLTKLLSGCPMLEDLVLDDISWFIWDFASVSVPTLKRLR 216

Query: 233 IMEIRSFSEEIEI---VEISVPSLQQLTLL-FYGARRPRV-----VEVARSPHLKKLDLV 283
                S+ E  E    V +  P+L  L        + P+V     VE      L K  L+
Sbjct: 217 F----SWQERDEFPKSVLLDTPNLVYLKFTDTVAGKYPKVNLDSLVEAHIDLRLLKPLLI 272

Query: 284 SVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPN 343
           + +    E N ++         F+ R C    + +S+N L+ L + SC  + + +    N
Sbjct: 273 NYHQGYGE-NDMVGNATD----FIMRICNVKTLYLSANTLQVLTY-SCDAIPIFN----N 322

Query: 344 LLLFTYEFNP 353
           L   T E NP
Sbjct: 323 LTHLTIESNP 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana GN=At4g14096 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 153/357 (42%), Gaps = 51/357 (14%)

Query: 9   DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 68
           D IS LP  I  H++S+L  KE A TSVLSKKW  L+   P LD D++ +    +     
Sbjct: 8   DIISSLPEAISCHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDESVYLNPENE---- 63

Query: 69  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR--- 125
                      +E    FMDFVD  L    +    + KF L +      G     DR   
Sbjct: 64  -----------TEVSSSFMDFVDRVLA--LQGNSPLHKFSLKI------GDGVEPDRIIP 104

Query: 126 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLK 185
           WI   +E GV +LD     +  T +  P  +F + ++  L+L+   L + F+ + L  LK
Sbjct: 105 WINNVLERGVSDLDLHVYME--TEFVFPSEMFLSKTLVRLKLMLYPLLE-FEDVYLPKLK 161

Query: 186 KLTLERVCLDEQMV--QKLASECPLLEDLCFSN----CWGLKHLCVSKASKLKI-MEIRS 238
            L ++    ++  +   KL S CP+LEDL   +     W    + V    +L    ++R 
Sbjct: 162 TLYIDSCYFEKYGIGLTKLLSGCPILEDLVLDDIPWCTWDFASVSVPTLKRLTFSTQVR- 220

Query: 239 FSEEIEIVEISVPSLQQLTLL-FYGARRPRV-VEVARSPHLKKLDLVSVYFADNEFNHLI 296
             E  + V I  P+L  L        + P+V  +     H+  L L+  +    E N ++
Sbjct: 221 -DEFPKSVSIDTPNLVYLKFTDTVAGKYPKVNFDSLVEAHI-DLRLLQGHQGYGE-NDMV 277

Query: 297 SKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNP 353
                    F+ R C    + +SSN L+ L + SC  + + +    NL   T E NP
Sbjct: 278 GNATD----FIMRICNVKTLYLSSNTLQVLTY-SCDAIPIFN----NLTHLTIESNP 325

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 28/210 (13%)

Query: 5   VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 64
           +   D IS+LP  +I  ++ YL  K++ RTS LS +W  L++  P LD D   F      
Sbjct: 24  MAGEDLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEF------ 77

Query: 65  LDYGSFCVRKQNY-SFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIV 123
                     Q+Y +F   + KF+DF           K C+ K +  L+        P V
Sbjct: 78  ----------QDYNAFVGFMNKFIDFSGEE-------KICLDKLK--LSSRKTVNDLPCV 118

Query: 124 DRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCS 183
            RWI   V   ++ LD E + +   +  +P +++  +++ NLRL    L + F+++ L  
Sbjct: 119 TRWIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVNLRLHRVLLGK-FEAVSLPC 177

Query: 184 LKKLTLER-VCLDEQMVQKLASECPLLEDL 212
           LK + LE  V  ++ +++ L S CP+L+DL
Sbjct: 178 LKTMRLEENVYANDVVLESLISSCPVLKDL 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidopsis thaliana GN=At3g52680 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 118/260 (45%), Gaps = 56/260 (21%)

Query: 5   VVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASR 64
           V+  DRISELP  ++  ++S L    V  TSVLSK+W  L+   P L+FD +        
Sbjct: 17  VMGKDRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSD-------- 68

Query: 65  LDYGSFCVRKQNYSFSETV-KKFMDFVDASLVRFCKLKFCIQKFRL-FLTFLDVKGSAPI 122
            DY S     ++Y+FSE V K F+      L          + FRL F+ F  V      
Sbjct: 69  -DYES-----EHYTFSEIVCKSFLSHKAPVL----------ESFRLKFVNFNPVD----- 107

Query: 123 VDRWIRLAVENGVRELDFENITDE---NTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSI 179
           +  W+ +A    +REL  +    E      +T P ++ + N++  L+LV C L      +
Sbjct: 108 IGLWVGIAFSRHLRELVLDFYPAELGKGVTFTFPSSLCTCNTLETLKLVLCILVDIPSPV 167

Query: 180 MLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238
           ++ SL+ L LE V   DE  V+ L S CP LE+L                        R 
Sbjct: 168 LMKSLRTLHLEFVRYKDESSVRNLLSGCPGLEELRL---------------------YRG 206

Query: 239 FSEEIEIVEISVPSLQQLTL 258
              +I++  I VPSLQ+LT+
Sbjct: 207 DDSDIKVFTIEVPSLQRLTI 226

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
224121624	528	predicted protein [Populus trichocarpa]	0.968	0.759	0.367	1e-61
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.900	0.795	0.309	3e-42
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.900	0.795	0.306	5e-42
356557323	833	PREDICTED: uncharacterized protein LOC10	0.900	0.447	0.334	9e-39
255590973	337	conserved hypothetical protein [Ricinus	0.630	0.774	0.360	1e-34
449458245	575	PREDICTED: uncharacterized protein LOC10	0.758	0.546	0.344	2e-34
357454743	761	Agglutinin alpha chain [Medicago truncat	0.920	0.500	0.320	3e-34
449476919	575	PREDICTED: uncharacterized protein LOC10	0.758	0.546	0.342	3e-34
224119688	563	f-box family protein [Populus trichocarp	0.915	0.673	0.324	3e-34
357503353	557	F-box/LRR-repeat protein [Medicago trunc	0.789	0.587	0.335	2e-33

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 152/414 (36%), Positives = 232/414 (56%), Gaps = 13/414 (3%)

Query: 8   MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 67
           MD IS  P  ++HH++S+L  K+V RTS+LSK+W  +  ++PILDF        +S   Y
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 68  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 127
                   +  + + + KFM++VD S+ RFCK KF +QKF+LFL   D++ S+ + D+W+
Sbjct: 61  S----ENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELSSHL-DKWV 115

Query: 128 RLAVENGVRELDFE----NITDENTVYTLPQAIFSANSVTNLRLVWC--RLEQPFDSIML 181
           +  +ENG +E+DF             Y++P AIF+A SVT L+L  C  +LE+ F  I L
Sbjct: 116 QKVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKLEESF-CIKL 174

Query: 182 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSE 241
            SL+KL L+ V +D+ +++++ + CPLLED+    CWGLK + V +  +LK  EI S   
Sbjct: 175 HSLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLS 234

Query: 242 EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS 301
           + E VEI  PSL+     F       +V V     LK L L   +  +     L+ KF  
Sbjct: 235 KPESVEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQDLVPKFHV 294

Query: 302 LEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINV 361
           LE L V  C +  K+KISS +LK+L   SC+ +  I+++ PNLL   Y  + +P+  IN 
Sbjct: 295 LESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLINA 354

Query: 362 P-CPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHIIDF 414
           P C W+V F     L+  WY+ LK+FL    Q+  L + +Y T +   +++ D 
Sbjct: 355 PSCHWQVEFSLMNTLDILWYMTLKEFLAKLNQLVYLHVYVYLTTIMSSLNLEDL 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 212/398 (53%), Gaps = 25/398 (6%)

Query: 8   MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 67
           MD ISELP  I+ H++S+LS K++ +T++LSK+W  L+++FP  +FD+N FF   S+L  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKN-FFHIESKL-- 57

Query: 68  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 127
                  QN  F       ++FV+ +L +   LK C++KF+L   F +   S  +VDRWI
Sbjct: 58  -------QNKRF-----HLINFVEQTLKQ---LK-CLRKFKLHTDFPE-PNSMVVVDRWI 100

Query: 128 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 187
              +E+GV+EL+     +    Y LPQ +F+  S+T L +  C+L    D   L S+K +
Sbjct: 101 DYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSV 160

Query: 188 TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE 247
           +L  V  +++ V++L S CP ++ +   +C GL+ L + + ++L  ME+++ S    + E
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNS---GLYE 217

Query: 248 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 307
               ++      F G  +P  + ++   +LK L L  V   D+ FN   S+FP LE L +
Sbjct: 218 FGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL 277

Query: 308 TRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKV 367
           + C +   ++ISS+ LK  +   C+ +  +D+DAP L    +  + I   S+N P   + 
Sbjct: 278 SYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVIS-FSLNAPALSQA 336

Query: 368 SF-VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTK 404
              +   + +  W +K  +FL     ++SL L   + K
Sbjct: 337 DIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGK 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/398 (30%), Positives = 212/398 (53%), Gaps = 25/398 (6%)

Query: 8   MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 67
           MD ISELP  I+ H++S+LS K++ +T++LSK+W  L+++FP  +FD+N FF   S+L  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKN-FFHIESKL-- 57

Query: 68  GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWI 127
                  QN  F       ++FV+ +L +   LK C++KF+L   F +   S  +VDRWI
Sbjct: 58  -------QNKRF-----HLINFVEQTLKQ---LK-CLRKFKLHTDFPE-PNSMVVVDRWI 100

Query: 128 RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKL 187
              +E+GV+EL+     +    Y LPQ +F+  S+T L +  C+L    D   L S+K +
Sbjct: 101 DYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSV 160

Query: 188 TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE 247
           +L  V  +++ V++L S CP ++ +   +C GL++L + + ++L  ME+++ S    + E
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNS---GLYE 217

Query: 248 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV 307
               ++      F G  +P  + ++   +LK L L  V   D+ FN   S+FP LE L +
Sbjct: 218 FGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILAL 277

Query: 308 TRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISINVPCPWKV 367
           + C +   ++ISS+ LK  +   C+ +  +D+D P L    +  + I   S+N P   + 
Sbjct: 278 SYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVIS-FSLNAPALSQA 336

Query: 368 SF-VCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTK 404
              +   + +  W +K  +FL     ++SL L   + K
Sbjct: 337 DIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGK 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 139/416 (33%), Positives = 212/416 (50%), Gaps = 43/416 (10%)

Query: 7   AMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRL 65
           ++DRIS+ P  +IHH++S+L +  +  RTSVLSK+W +L+ S+ +L FD+  F       
Sbjct: 158 SVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIGHE 217

Query: 66  DYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDR 125
           D             S     F D+V  SL+        I+K  L +T  D+   AP ++ 
Sbjct: 218 DS------------SNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLEL 265

Query: 126 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLK 185
           W+ +A+   ++ELD          YTLPQ +FS+ ++T +RL  C+L    ++I L  L+
Sbjct: 266 WLNIAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGT-CNNIKLPYLQ 324

Query: 186 KLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEI 245
           KL L ++ L E  +Q L S C  +EDL    C GLKHL VS   +LK  EI     +++ 
Sbjct: 325 KLYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIH-HCIQLKK 383

Query: 246 VEISVPSLQQLTLLFYGAR-RPRVVEVARSPHLKKLDL----VSVYFADNEFNHLISKFP 300
           VEIS P+L   T  + G +  P  V +     LK+L L    V+  F +N+F    S FP
Sbjct: 384 VEISAPNLD--TFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQF----SNFP 437

Query: 301 SLEDLFVTRCCLPGK-IKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIPIISI 359
            LE L ++      + I IS+  L+    + CK L ++ V+APNLL F  +   +P + I
Sbjct: 438 LLEKLDLSMSNNKSRFIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPWVEI 497

Query: 360 NVPCPW-----KVSFVCK------GVLNTHWYLKLKKFLGVSKQIESLKLSLYSTK 404
           +   P+     K+SFV K      G  +  W +++K F+    + E  KL LYS K
Sbjct: 498 H---PFGLTQAKLSFVPKSEPRVVGYGDKIW-IRMKSFIQKFNR-ERFKLVLYSNK 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590973|ref|XP_002535407.1| conserved hypothetical protein [Ricinus communis] gi|223523200|gb|EEF26976.1| conserved hypothetical protein [Ricinus communis]

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/269 (36%), Positives = 157/269 (58%), Gaps = 8/269 (2%)

Query: 1   MDETVVAMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVSFPILDFDQNYFF 59
           MD    ++D IS+LP  +IHH++S L   K+ ARTS+LSK+W  ++ S+ ILDFDQ  F 
Sbjct: 62  MDRRSDSIDLISQLPNHVIHHILSLLRCKKDAARTSILSKRWRAIWASYLILDFDQRKFQ 121

Query: 60  PGASRLDY-GSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 118
               ++    S   +++    ++  + F  FV+ +L    +    IQKF+L LT  +V+ 
Sbjct: 122 KQEKKVRRLSSKSKKRKEVEINKKNEMFRAFVENTLRTHIEQDSGIQKFKLHLTSYNVEL 181

Query: 119 SAPIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS 178
           SA  VD+WI  A  N +++LD    + ++  Y LPQ +F+A+++T LR+  C+L    D 
Sbjct: 182 SAH-VDQWIGFATTNNIKDLDLYIPSKKDRCYNLPQTVFAASTITALRISGCKLRTCID- 239

Query: 179 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238
           I L +L+KL   ++ +D QM+Q L   CPL++DL    C GLK L +S ++KL  ++I  
Sbjct: 240 IKLSNLQKLCFAKLRVDGQMIQNLMLSCPLIDDLRLIYCTGLKTLLLS-SNKLYRVDIH- 297

Query: 239 FSEEIEIVEISVPSLQQLTLLFYGARRPR 267
           F   ++ VE+  P+LQ  T  ++G +  R
Sbjct: 298 FCHGLKNVEVLSPNLQ--TFWYHGKKSTR 324

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 3   ETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPG 61
           E V  +D IS+LP   IHH++S+L SAKE ARTS+LSKKW   + SF +L F++  +   
Sbjct: 48  EVVEPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKA 107

Query: 62  ASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAP 121
              L+       KQ        +KF+D +D SL         I K  L +T   V     
Sbjct: 108 EVGLNSD-----KQR-------QKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSH--- 152

Query: 122 IVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRL---VWCRLEQPFDS 178
            + RW+ +A ENG+ ELD  ++        +P  + S  +++ LRL    W      F++
Sbjct: 153 -LKRWVDMAGENGLGELDI-HVETTRKRCKVPLCMHSIKTLSGLRLQGLYW----SSFEA 206

Query: 179 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238
           +   +L+KL L R+ +D Q++QKL S CPLL DL    C GL +L +S + KL+ +++  
Sbjct: 207 LEFNNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQ 266

Query: 239 FSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADNEFNHLI 296
               +  VE+ VPSL+     +Y A++     + +     LK+L L      +N FN L+
Sbjct: 267 -CHFLRRVELQVPSLKT---FWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLL 322

Query: 297 SKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDA 341
             FP LE L ++RC     I I++ +L++L  R CK LK IDVD+
Sbjct: 323 VSFPVLEKLNLSRCDKLQIIGIANVELQSLGLRCCKRLKHIDVDS 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 213/430 (49%), Gaps = 49/430 (11%)

Query: 1   MDETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYFF 59
           M + V ++DRIS+LP  +I+H++S+L + ++  RT  LSK+W  L+ S+  L F +  F 
Sbjct: 34  MIQIVESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFA 93

Query: 60  PGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGS 119
            G    D GS    K+N         F   V  SL  +      IQK  L +   D+   
Sbjct: 94  AGIGPED-GS---NKENL--------FRQHVADSLHTYLANNLQIQKLLLHMMSFDLT-D 140

Query: 120 APIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSI 179
           AP+VD W+  AV   ++E+D +    +   YTLP+ + S+ ++T LRL  C L +   +I
Sbjct: 141 APLVDSWLTSAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRR-CGNI 199

Query: 180 MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF 239
           ML  L+KL L +V L EQ+V  L S CP +EDL F  C GLK L +     L  +EI + 
Sbjct: 200 MLPRLQKLYLRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYI-HCDSLSRLEIHN- 257

Query: 240 SEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDL----VSVYFADNEFNH 294
             +++   I  P+L   T  F G +  P  V +     LKKL L    VS  F +N+FN 
Sbjct: 258 CNQLKTAYIFAPNLD--TFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFN- 314

Query: 295 LISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEF 351
              KFP LE L +   C+  K+K   I +  L+ ++ + CK L  + + AP L+ F  + 
Sbjct: 315 ---KFPLLEKLDL---CIADKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKG 368

Query: 352 NPIPIISINVP---CPWKVSFVCK------GVLNTHWYLKLKKFLGVSKQIESLKLSLYS 402
             +P      P      K+S          G+ N  W++ ++ F+ +   +E  K+ ++S
Sbjct: 369 ETMPYFDFVTPFLLTDAKISLSTATESRDVGLGNQLWFM-MRPFISLFFPVEGFKMIMHS 427

Query: 403 TKVCYKIHII 412
           +K     HII
Sbjct: 428 SK-----HII 432

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 181/345 (52%), Gaps = 31/345 (8%)

Query: 3   ETVVAMDRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPG 61
           E V  +D IS+LP   IHH++S+L SAKE ARTS+LSKKW   + SF +L F++  +   
Sbjct: 48  EVVEPVDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKA 107

Query: 62  ASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAP 121
              L+       KQ        +KF+D +D SL         I K  L +T   V     
Sbjct: 108 EVGLNSD-----KQR-------QKFIDSIDNSLQSHLTQNLGIYKLVLRITPELVSH--- 152

Query: 122 IVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRL---VWCRLEQPFDS 178
            + RW+ +A ENG+ ELD  ++        +P  + S  +++ LRL    W      F++
Sbjct: 153 -LKRWVDMAGENGLGELDI-HVETTRKRCKVPLCMHSIKTLSGLRLQGLYW----SSFEA 206

Query: 179 IMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS 238
           +   +L+KL L R+ +D Q++QKL S CPLL DL    C GL +L +S + KL+ +++  
Sbjct: 207 LEFNNLQKLYLRRLHVDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQ 266

Query: 239 FSEEIEIVEISVPSLQQLTLLFYGARRPRV--VEVARSPHLKKLDLVSVYFADNEFNHLI 296
               +  +E+ VPSL+     +Y A++     + +     LK+L L      +N FN L+
Sbjct: 267 -CHFLRRIELQVPSLKT---FWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLL 322

Query: 297 SKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDA 341
             FP LE L ++RC     I I++ +L++L  R CK LK IDVD+
Sbjct: 323 VSFPVLEKLNLSRCDKLQIIGIANVELQSLGLRCCKRLKHIDVDS 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 134/413 (32%), Positives = 207/413 (50%), Gaps = 34/413 (8%)

Query: 1   MDETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFP 60
           M   V A DRIS LP  ++H+++SYLS + V R SVLSK W+++  SFP+ DF ++    
Sbjct: 27  MGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVLLL 86

Query: 61  GASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSA 120
           G             + Y   +   KF+DFV  SL+          KFRL    +D+    
Sbjct: 87  G-------------KRYEIQDWKNKFIDFVQDSLLAQHHHNTRSHKFRL---SMDLDSYD 130

Query: 121 PIV----DRWIRLAVENGVRELD--FENITDENTVYTLPQAIFSANSVTNLRLVWC-RLE 173
           P +    D  + LA + GV E D  F+NI+     Y LP+A+ SA  +T LRL    +L 
Sbjct: 131 PQLTSRADHLLELATKCGVYEFDLNFQNISH----YCLPRALLSAEEITVLRLNGNYKLS 186

Query: 174 QPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKI 233
            P D+I   SL+ L+L  V +DE ++Q L   CPL+E L    C+G+K + +S   KLK 
Sbjct: 187 LPRDAINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKE 246

Query: 234 MEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVA--RSPHLKKLDLVSVYFADNE 291
           +E+      +E +EI VPSL+         +    +++   R+  L KL   ++     +
Sbjct: 247 VEVNEGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQ 306

Query: 292 -FNHLISKFPSLEDLFVT-RCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTY 349
            F  LI++FP+L+ L +        +IKIS+ QL+ L   S    KV  + +P+L  F +
Sbjct: 307 VFQDLIAQFPALKVLALNCYATSVSRIKISNPQLEKLQLWSSALTKVT-ITSPSLHSFKH 365

Query: 350 EFNPIP-IISINVPCPWKVSF-VCKGVLNTHWYLKLKKFLGVSKQIESLKLSL 400
                P   S++     K +  V KG L +  +L+L+++LG   QI  L L +
Sbjct: 366 FTYGFPSAFSLDQSSLQKATLHVHKGALYSSDFLQLREYLGNFNQIRRLTLRI 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503353|ref|XP_003621965.1| F-box/LRR-repeat protein [Medicago truncatula] gi|357503387|ref|XP_003621982.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496980|gb|AES78183.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496997|gb|AES78200.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/364 (33%), Positives = 173/364 (47%), Gaps = 37/364 (10%)

Query: 9   DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 68
           DR+S LP  I+HH++S L  K+ ARTSVLSK W   + +FPIL    N F         G
Sbjct: 19  DRLSILPKIILHHILSRLPEKDAARTSVLSKAWADTWFTFPILSISDNKF--------TG 70

Query: 69  SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 128
            F +   +       KKF+D+V  +L RFC     I++ ++ L   ++   +  VD W++
Sbjct: 71  WFPLSIDD--VKRKRKKFIDYVTRTLSRFCDQGLAIKECKIILNRFELHYMSKHVDLWLK 128

Query: 129 LAVENGVRELDF-----ENITDE--NTVYTLPQAIFSANSVTNLRL-VWCRLEQPF--DS 178
            A  +GV  ++       N  +E     Y LP  +  A S+T + L    R++Q F   S
Sbjct: 129 SASGSGVEVVELCLPCGPNYIEEGHGKCYVLPTGVIEAKSLTKVVLKGGIRVDQAFMNQS 188

Query: 179 IMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---------KHLCVSKA 228
           I   SL+ L+L  V L DE  ++ L S CP +E +   +C  L         K L +   
Sbjct: 189 IKFFSLRVLSLWIVLLEDEHAIEHLISCCPFIEHITLKHCSVLSPGGGVKLMKSLSMHGL 248

Query: 229 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV--- 285
            KLK +++    E    V I VPSL+ L         P  +      +LK LDL S+   
Sbjct: 249 PKLKTVDVHGIQE----VYIDVPSLEYLYYCHDVLNAPYKIHFDSCRNLKGLDLFSLEGN 304

Query: 286 YFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLL 345
              D  F  L SKFP LE L   +C +   I ISS QLK L    C  +K +++DAPNLL
Sbjct: 305 TITDKWFLELFSKFPFLERLKFVKCTMSETINISSVQLKVLELSGCHNMKEVNIDAPNLL 364

Query: 346 LFTY 349
              Y
Sbjct: 365 SCEY 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2152950	540	AT5G41840 [Arabidopsis thalian	0.475	0.364	0.309	8.2e-17
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.210	0.194	0.370	1.6e-13
TAIR|locus:2052362	443	AT2G42720 "AT2G42720" [Arabido	0.478	0.446	0.326	2.7e-13
TAIR|locus:2160205	472	AT5G54820 [Arabidopsis thalian	0.5	0.438	0.258	3.5e-13
TAIR|locus:2126096	507	AT4G00320 "AT4G00320" [Arabido	0.468	0.382	0.301	4.2e-13
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.120	0.111	0.5	8.3e-13
TAIR|locus:2081247	464	AT3G59160 "AT3G59160" [Arabido	0.490	0.437	0.324	1.3e-12
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.326	0.296	0.270	1.9e-12
TAIR|locus:2016630	505	AT1G58310 [Arabidopsis thalian	0.458	0.376	0.319	2.6e-12
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.280	0.253	0.364	3.6e-12

TAIR|locus:2152950 AT5G41840 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 8.2e-17, P = 8.2e-17
 Identities = 69/223 (30%), Positives = 114/223 (51%)

Query:     6 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQN-YFFPGASR 64
             V+ DRIS LP  +I H++S+L  KE A T+VL+K+W  L    P L+FD + YF P A R
Sbjct:    11 VSGDRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFDDSIYFHPRARR 70

Query:    65 LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 124
               Y            S++ + FM FVD+ L    K K  +++F +     DV   + +++
Sbjct:    71 NKY------------SKSYESFMSFVDSVLALQAKTKTPLKRFHVKCE--DVVDQSWVLE 116

Query:   125 RWIRLAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRLVW---CRLEQPF 176
              WI   ++ GV ++D       N  + ++ Y+LP  IF + ++  L++ +     ++   
Sbjct:   117 -WIPKVLKRGVLDIDLHITSSRNYCENSSFYSLPSKIFVSKTLVRLKIQFQDGVHIDVE- 174

Query:   177 DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-W 218
               + L  LK L L+   ++  M+ KL S C  LE+L  +N  W
Sbjct:   175 GGVSLPKLKTLHLDYFKIETSMLNKLLSGCHALEELVLANLMW 217

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
 Identities = 33/89 (37%), Positives = 48/89 (53%)

Query:   126 WIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS-IMLCSL 184
             WI  A   GVR+L  ++   E+   TLP  +FS N    +  + C ++  F S + L SL
Sbjct:   110 WIATAFARGVRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSRVCLKSL 169

Query:   185 KKLTLERVCL-DEQMVQKLASECPLLEDL 212
             +KL L++V   DE+ V  L   CP L+DL
Sbjct:   170 RKLYLDQVHFKDEESVCNLLCGCPSLQDL 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2052362 AT2G42720 "AT2G42720" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 75/230 (32%), Positives = 109/230 (47%)

Query:     8 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDY 67
             MDRIS LP  I+ H++S+LS KE A TS LS +W  ++V  P L             LDY
Sbjct:     1 MDRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNVFVFVPSL------------HLDY 48

Query:    68 GSFCVRKQNYSFSETVKKFMDFVDASLVRFC-KLKFCIQKFRLFLTFLDVKG--SAPIVD 124
                   +Q+    E  ++F+DFVD     F  K    I+K  L +   D +   +   V 
Sbjct:    49 A-----RQH----ENPREFIDFVDFVNTLFNRKGNSPIKKLALKIHLKDNQSLQNQTHVQ 99

Query:   125 RWI-RLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLV-WCRLEQPFDSIMLC 182
              WI R+    GV +LD   IT +     +P  IF +N++  LRL     ++   +++ L 
Sbjct:   100 SWIHRVLSRGGVTDLDLF-ITFKGKFQLVPLLIFKSNTLVKLRLGRGFTIKLCHENVYLP 158

Query:   183 SLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNC-WGLKHLCVSKAS 229
              LK L L+ V  D    + + L   CPLLE+L   +  W  K  C S +S
Sbjct:   159 MLKTLCLDTVDFDGDHNVFETLLPRCPLLEELVLEDQRW--KQWCGSVSS 206

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2160205 AT5G54820 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
 Identities = 56/217 (25%), Positives = 103/217 (47%)

Query:     6 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASR 64
             +  DR+S LP  ++  ++S+L  KE  RTSVLSK+W  L +    L F + +Y  P  + 
Sbjct:     4 IQQDRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPDITD 63

Query:    65 LDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVD 124
              +Y      +   SF  +V K++      +V     + C      F   +D      +  
Sbjct:    64 AEYSRIVAYR---SFFCSVDKWVSITQHQVVE--SFEICFSHLVGFEDKIDALIEYAVST 118

Query:   125 RWIRLAVE-NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCS 183
             R   L V+ +        +I+  + +YTLP++++S  ++ +L++  C+ + P   +    
Sbjct:   119 RVKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFD-PSKFVNPVL 177

Query:   184 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGL 220
             L+ L++  V L+   +  L S+ P L+ L   NCWG+
Sbjct:   178 LRSLSIGWVRLEN--LHSLLSKSPSLQSLSIKNCWGV 212

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126096 AT4G00320 "AT4G00320" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 66/219 (30%), Positives = 106/219 (48%)

Query:     9 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 68
             D IS LP  +I H++S+L  K  A T+VL+K+W  L    P LDFD+++      R D  
Sbjct:    13 DGISGLPDAMICHILSFLPTKVAASTTVLAKRWKPLLAFMPNLDFDESF------RFDPR 66

Query:    69 SFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIR 128
               C  ++  S S     FM  VD+ L    +    + KF  ++    V+ ++ +   WI 
Sbjct:    67 MTCEERRKGSES-----FMLVVDSVLALQAEANATLNKF--YVKCEGVEQNSVL--EWIP 117

Query:   129 LAVENGVRELDFE-----NITDENTVYTLPQAIFSANSVTNLRLVW---CRLEQPFDSIM 180
               ++ GV ++D +          +T Y LP  IF + ++  L++ +     +    D + 
Sbjct:   118 KVLKRGVLDIDLQIPSSRGFGSNSTFYPLPSEIFVSKTLVRLKIQFQDGANVNVEGD-VS 176

Query:   181 LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC-W 218
             L  LK L L+ V +D +M+QKL S C  LE+L   N  W
Sbjct:   177 LPMLKTLHLDYVKMDTRMLQKLLSGCHTLEELLLMNLIW 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 8.3e-13, Sum P(3) = 8.3e-13
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query:     9 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYF 58
             DRIS LP  ++  ++S LS KE   TSVLSK+W  L++  P+LD D N F
Sbjct:    15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNF 64

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081247 AT3G59160 "AT3G59160" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 72/222 (32%), Positives = 100/222 (45%)

Query:     9 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYG 68
             D I++LP  ++ H++SYL+ KE A TS+LS++W  L    P L+FD + +     R+   
Sbjct:    13 DMINDLPDALLCHVLSYLTTKEAASTSLLSRRWRYLLAFVPNLEFDDSAYLHRDKRVKNP 72

Query:    69 SFCVRKQNYSFSETV----KK----FMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSA 120
                  K    F  TV    KK    F DFVD  L    +    + KF L +         
Sbjct:    73 LH--EKGLVGFVLTVDDKRKKLSTSFPDFVDRILD--LQGNSPLDKFSLKMVDDHDPVDP 128

Query:   121 PIVDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFD--S 178
               V  WI   +  GV +L    + D N   +LP  IF   ++  L L   R   P D   
Sbjct:   129 DCVAPWIHKVLVRGVSDLHL--VIDMNEWTSLPAKIFLTETLVKLTLK-IRDGPPIDVKH 185

Query:   179 IMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDLCFSNCW 218
             + L  LK L LE V  DE+ +   KL S CP LE+L   + W
Sbjct:   186 VHLPKLKTLHLESVMFDEEDIGFSKLLSGCPELEELVLHHIW 227

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 39/144 (27%), Positives = 70/144 (48%)

Query:    89 FVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDENT 148
             F+D +L R+   K  + +F L  + ++   + P ++ WI+ A+   V  L  +       
Sbjct:    84 FIDETLTRYTASK--MMRFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVAN 138

Query:   149 VYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPL 208
              +  P   F  NS  +L+ +   L+     I +C LKKL L    L ++ +  +   CP+
Sbjct:   139 KFKFPD-FFHINS--SLKQLTVVLDFSDTMIAIC-LKKLYLSTCLLSDESMANILFGCPI 194

Query:   209 LEDLCFSNCWGLKHLCVSKASKLK 232
             LE L   +C GL+ L +SK+ +L+
Sbjct:   195 LESLTLDHCGGLRVLDLSKSLRLR 218

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016630 AT1G58310 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 69/216 (31%), Positives = 107/216 (49%)

Query:     9 DRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFF------PGA 62
             D IS LP  ++ H++S+L+ KE A TSVL+KKW  L+ S P LDFD +         P  
Sbjct:     8 DIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLGKRNPAV 67

Query:    63 SRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPI 122
             S  DY    ++  N    +    FMDFVD  ++R  +    + KF L +   D      I
Sbjct:    68 SGEDY----LKMINERSDQLSTSFMDFVD-QVLRL-QDNSPLHKFSLKIR--DCVDIVRI 119

Query:   123 VDRWIRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ-PF---DS 178
             +  WI   +E GV +L+ +      +  +LP  IF + ++  L+L    +E+ PF   + 
Sbjct:   120 IC-WILKVLERGVSDLELDMHLKWKS--SLPSKIFLSETLVRLKL---SVERGPFIDVED 173

Query:   179 IMLCSLKKLTLERVCLDEQMV--QKLASECPLLEDL 212
             + L  LK L +  V  ++  +   KL S C +LE+L
Sbjct:   174 VHLPKLKTLHIVSVKFEKHGIGLNKLLSGCHILEEL 209

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 51/140 (36%), Positives = 71/140 (50%)

Query:     8 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDF-DQNYFFPGASRLD 66
             MD  S+LP  +I H++S L  KE A TSVL+KKW  L+   P LDF D ++  P   +  
Sbjct:     6 MDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQEGK-- 63

Query:    67 YGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFL-TFLDVKGSAPIVDR 125
                   R+++      ++ FMDFVD  L    +    I+KF L + T +D       VDR
Sbjct:    64 ------REKD----GILRSFMDFVDRVLA--LQGASPIKKFSLNVKTGVDPDR----VDR 107

Query:   126 WIRLAVENGVREL----DFE 141
             WI   ++ GV  L    DFE
Sbjct:   108 WICNVLQRGVSHLALFMDFE 127

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.78
KOG4341	483	consensus F-box protein containing LRR [General fu	99.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.42
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.39
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.23
KOG4341	483	consensus F-box protein containing LRR [General fu	99.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.08
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.07
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.02
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.73
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.72
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.63
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.45
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.39
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.17
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.06
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.99
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.89
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.73
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.36
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.12
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.04
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.88
PRK15386	426	type III secretion protein GogB; Provisional	96.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.77
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.68
PRK15386	426	type III secretion protein GogB; Provisional	96.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.64
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.48
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.39
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.38
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.07
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.02
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	95.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.93
PLN03150	623	hypothetical protein; Provisional	95.7
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.57
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.54
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	95.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.11
PLN03150	623	hypothetical protein; Provisional	94.44
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.14
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.63
smart00579	72	FBD domain in FBox and BRCT domain containing plan	93.03
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	91.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.45
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.07
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	89.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	89.34
PF13013	109	F-box-like_2: F-box-like domain	88.69
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.31
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.86
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.84

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=8e-21  Score=162.94  Aligned_cols=258  Identities=24%  Similarity=0.302  Sum_probs=159.0

Q ss_pred             ccCCCChHHHHHHhcCCChhhHHhhhccccchhhh------hcccCeEEeeCCCCCCCCCCCccCccccccccchhhhhH
Q 015025           10 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL------YVSFPILDFDQNYFFPGASRLDYGSFCVRKQNYSFSETV   83 (414)
Q Consensus        10 ~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (414)
                      .++.||||++..||+.|+.+++.+++.|||||+++      |...   +.....+.+                       
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i~p-----------------------  150 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNIHP-----------------------  150 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCccCh-----------------------
Confidence            36789999999999999999999999999999975      4432   333333222                       


Q ss_pred             HHHHHHHHHHHHhhhcCCcccceEEEEEEecccCCChhHHHHHHHHH--HhcCceeeEEEeeeCCCccccCCcccccccc
Q 015025           84 KKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA--VENGVRELDFENITDENTVYTLPQAIFSANS  161 (414)
Q Consensus        84 ~~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~w~~~~--~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~  161 (414)
                          +...+.+    .  ..|..|++-  .. +...    .+....+  ...++++++  +.........+-..+..|..
T Consensus       151 ----~~l~~l~----~--rgV~v~Rla--r~-~~~~----prlae~~~~frsRlq~lD--LS~s~it~stl~~iLs~C~k  211 (419)
T KOG2120|consen  151 ----DVLGRLL----S--RGVIVFRLA--RS-FMDQ----PRLAEHFSPFRSRLQHLD--LSNSVITVSTLHGILSQCSK  211 (419)
T ss_pred             ----hHHHHHH----h--CCeEEEEcc--hh-hhcC----chhhhhhhhhhhhhHHhh--cchhheeHHHHHHHHHHHHh
Confidence                2233333    1  123333322  10 0111    1122222  224678888  55544555666666677888


Q ss_pred             ccEEEEecccccCCc--cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCCcee---ecc-CCCCCcEE
Q 015025          162 VTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHL---CVS-KASKLKIM  234 (414)
Q Consensus       162 L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---~~~-~~~~L~~L  234 (414)
                      |+.|.+.+..+.++.  ....=.+|+.|+|+.+.- +..+++.++++|..|.+|+|++|......   .+. --++|+.|
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            888888887776654  233346677777777755 66677777777777777777777643221   111 01566666


Q ss_pred             EeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc
Q 015025          235 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG  314 (414)
Q Consensus       235 ~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  314 (414)
                      ++++|.-.++                   ...+.....+||+|.+||++.+....+.....+.+|+.|++|.++.|..+.
T Consensus       292 NlsG~rrnl~-------------------~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  292 NLSGYRRNLQ-------------------KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII  352 (419)
T ss_pred             hhhhhHhhhh-------------------hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC
Confidence            6666541111                   011112234678888888876654434556667789999999999996553


Q ss_pred             cc----cccccccceEEeccC
Q 015025          315 KI----KISSNQLKNLLFRSC  331 (414)
Q Consensus       315 ~~----~~~~~~L~~L~l~~c  331 (414)
                      .-    ....|.|.+|++-+|
T Consensus       353 p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  353 PETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hHHeeeeccCcceEEEEeccc
Confidence            21    234789999999888

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.70  E-value=1.1e-19  Score=162.84  Aligned_cols=33  Identities=27%  Similarity=0.546  Sum_probs=30.8

Q ss_pred             CCCChHHHHHHhcCCChhhHHhhhccccchhhh
Q 015025           12 SELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   44 (414)
Q Consensus        12 ~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~l   44 (414)
                      -.||.|++..|||+|+.++++++|++|+-|.-+
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~  105 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKL  105 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence            469999999999999999999999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.47  E-value=1e-13  Score=147.77  Aligned_cols=258  Identities=17%  Similarity=0.171  Sum_probs=158.4

Q ss_pred             cCceeeEEEeeeCCCccccCCcccc-ccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  211 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  211 (414)
                      ++++.|+  +..+.. ...+|..++ .+++|++|++++|.+........+++|++|+++++.++. .+...+.++++|+.
T Consensus        93 ~~L~~L~--Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~  168 (968)
T PLN00113         93 PYIQTIN--LSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKV  168 (968)
T ss_pred             CCCCEEE--CCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCE
Confidence            6888888  544322 246777766 688999999998887644344568889999998887742 23334567888999


Q ss_pred             EEeeccCCCcee--eccCCCCCcEEEeeecc--ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeeccc
Q 015025          212 LCFSNCWGLKHL--CVSKASKLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYF  287 (414)
Q Consensus       212 L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  287 (414)
                      |++.+|.....+  .+.++++|+.|++++|.  ..+......+++|++|+++.+......+..++.+++|+.|+++++.+
T Consensus       169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence            998888643322  23467888888888775  11122223567888888875554444555567788888888887766


Q ss_pred             chHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCCCceeee---ccCCccceEEeeeccc----ceE
Q 015025          288 ADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPI----PII  357 (414)
Q Consensus       288 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~~l~~~~~~~----~~~  357 (414)
                      +... ...+..+++|+.|++.+|.....+   ....++|+.|++++|.-...++   ...++|+.+++.++.+    |..
T Consensus       249 ~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        249 TGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             cccc-ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            5432 234566778888888877433222   2235677777777664222221   2345666666666542    223


Q ss_pred             eeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEE
Q 015025          358 SINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSL  400 (414)
Q Consensus       358 ~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~  400 (414)
                      ...+++|+.+++..+...     ..++..+..+++|+.|+++.
T Consensus       328 ~~~l~~L~~L~L~~n~l~-----~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFS-----GEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             HhcCCCCCEEECcCCCCc-----CcCChHHhCCCCCcEEECCC
Confidence            345667777776533211     11233445556666666553

>PLN03210 Resistant to P

Probab=99.42  E-value=4.7e-13  Score=143.61  Aligned_cols=121  Identities=16%  Similarity=0.142  Sum_probs=69.4

Q ss_pred             CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccc--cccccceEEeccCCCceeeeccCCccceEEeeec
Q 015025          275 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI--SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFN  352 (414)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--~~~~L~~L~l~~c~~L~~l~i~~~~L~~l~~~~~  352 (414)
                      ++|+.|+++++...... ...+.++++|+.|++.+|..++.+..  .+++|+.|++++|..++.++-...+++.+++.++
T Consensus       778 ~sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT  856 (1153)
T ss_pred             ccchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC
Confidence            35555555544322221 22345677777777777765555432  3567777777777777665544456777777666


Q ss_pred             c---cceEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          353 P---IPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       353 ~---~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                      .   +|.....+++|+.+++..|.+.     ..+...+..+++|+.+.++.+
T Consensus       857 ~i~~iP~si~~l~~L~~L~L~~C~~L-----~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        857 GIEEVPWWIEKFSNLSFLDMNGCNNL-----QRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCccChHHHhcCCCCCEEECCCCCCc-----CccCcccccccCCCeeecCCC
Confidence            5   3344556778888888755442     223333445555555555433

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.39  E-value=5.2e-13  Score=142.45  Aligned_cols=15  Identities=13%  Similarity=-0.106  Sum_probs=8.0

Q ss_pred             HhccCcceeEEEEEE
Q 015025          386 FLGVSKQIESLKLSL  400 (414)
Q Consensus       386 ~l~~~~~L~~L~i~~  400 (414)
                      .+.++++|+.|+++.
T Consensus       423 ~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        423 EFTKLPLVYFLDISN  437 (968)
T ss_pred             hHhcCCCCCEEECcC
Confidence            344555566555553

>PLN03210 Resistant to P

Probab=99.23  E-value=3.2e-11  Score=129.68  Aligned_cols=232  Identities=17%  Similarity=0.167  Sum_probs=132.2

Q ss_pred             cccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee--ccCCCCCcEEE
Q 015025          159 ANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIME  235 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--~~~~~~L~~L~  235 (414)
                      ..+|+.|++.++.+...+ ....+++|+.|+|+++..- ..++. ++.+++|+.|.+.+|..+..+.  +..+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            456666776666554433 3445677777777665321 01111 4456777777777776544432  23456677777


Q ss_pred             eeeccccceeee--ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH----------------------
Q 015025          236 IRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE----------------------  291 (414)
Q Consensus       236 i~~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------------  291 (414)
                      +.+|. .+..+.  ..+++|++|.+++|.....++   ...++|+.|+++++.+..-.                      
T Consensus       688 L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p---~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        688 MSRCE-NLEILPTGINLKSLYRLNLSGCSRLKSFP---DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             CCCCC-CcCccCCcCCCCCCCEEeCCCCCCccccc---cccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence            77665 333222  245566666666433211111   11234455555443321100                      


Q ss_pred             ------HHHHhhcCCCCcEEEecCcccccccc---ccccccceEEeccCCCceeeec--cCCccceEEeeeccc-ceEee
Q 015025          292 ------FNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVIDV--DAPNLLLFTYEFNPI-PIISI  359 (414)
Q Consensus       292 ------~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~L~~l~i--~~~~L~~l~~~~~~~-~~~~~  359 (414)
                            ........++|+.|++.+|+....++   ..+++|+.|++++|.+++.++.  ..++|+.+++.++.. .....
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence                  00011234688888988886555443   3467899999999999888764  367788888888651 11111


Q ss_pred             ecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          360 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       360 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      ..++|+.|++....      +..++.-++++++|+.|.++.++
T Consensus       844 ~~~nL~~L~Ls~n~------i~~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        844 ISTNISDLNLSRTG------IEEVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             cccccCEeECCCCC------CccChHHHhcCCCCCEEECCCCC
Confidence            23578888875432      44566678889999999887543

syringae 6; Provisional

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.14  E-value=9.4e-13  Score=118.74  Aligned_cols=261  Identities=15%  Similarity=0.139  Sum_probs=156.3

Q ss_pred             cCceeeEEEeeeCCC-ccccCCccccccccccEEEEecccc-cCCc---cccCCCCcceEEceeEEe-chHHHHHHHhcC
Q 015025          133 NGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWCRL-EQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASEC  206 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~-~~~~l~~~l~~~~~L~~L~l~~~~l-~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~  206 (414)
                      ..+++|.  ++++.. ....+-.....|+++++|.+.+|.. +...   ....|++|+++++..|.. ++..+..+..+|
T Consensus       138 g~lk~LS--lrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELS--LRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             ccccccc--ccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            5678888  766543 3445555566799999999988873 2211   456789999999999655 888888889999


Q ss_pred             CcccEEEeeccCCCce----eeccCCCCCcEEEeeecc-cc---ceeeeecCCCeeEEEEEeeCCCC--ceEEeecCCCC
Q 015025          207 PLLEDLCFSNCWGLKH----LCVSKASKLKIMEIRSFS-EE---IEIVEISVPSLQQLTLLFYGARR--PRVVEVARSPH  276 (414)
Q Consensus       207 p~Le~L~l~~~~~~~~----~~~~~~~~L~~L~i~~~~-~~---l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~  276 (414)
                      |+|++|++++|+.+..    -...++..++.+...+|. ..   +..+...++-+..+++..|....  .....--.+..
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence            9999999999987654    122356677777667776 11   12222234444444433332211  11111123566


Q ss_pred             ccEEEeeec-ccchHHHHHHhhcCCCCcEEEecCcccccc-----ccccccccceEEeccCCC-----ceeeeccCCccc
Q 015025          277 LKKLDLVSV-YFADNEFNHLISKFPSLEDLFVTRCCLPGK-----IKISSNQLKNLLFRSCKY-----LKVIDVDAPNLL  345 (414)
Q Consensus       277 L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~-----~~~~~~~L~~L~l~~c~~-----L~~l~i~~~~L~  345 (414)
                      |+.|+.+++ ++++..+..+..++++|+.|.+.+|.....     +..+++.|+.+++..|..     |..+..++|.|+
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            777777654 355566667777778888888887754333     344567777777777743     344556677777


Q ss_pred             eEEeeecc-cc--------eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEE
Q 015025          346 LFTYEFNP-IP--------IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS  399 (414)
Q Consensus       346 ~l~~~~~~-~~--------~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~  399 (414)
                      .+.++.++ ++        .....+..|+.+++..+....+    ..-+.+.++++||..++.
T Consensus       376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d----~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD----ATLEHLSICRNLERIELI  434 (483)
T ss_pred             cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH----HHHHHHhhCcccceeeee
Confidence            77666433 11        1122344555556654443332    223445566666665444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.08  E-value=8.8e-12  Score=117.00  Aligned_cols=103  Identities=20%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             cCceeeEEEeeeCCCccccCCccccc-cccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      +-++.|+  +..+  .-.++|...+. -.++++|+|++|.++...  .+.++.+|.+|.|+++.++. -....+.+.|+|
T Consensus       149 ~alrslD--LSrN--~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L  223 (873)
T KOG4194|consen  149 PALRSLD--LSRN--LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKL  223 (873)
T ss_pred             hhhhhhh--hhhc--hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchh
Confidence            4566666  4321  22344443333 367888888888766543  56677788888888887742 223335567888


Q ss_pred             cEEEeeccCC--CceeeccCCCCCcEEEeeecc
Q 015025          210 EDLCFSNCWG--LKHLCVSKASKLKIMEIRSFS  240 (414)
Q Consensus       210 e~L~l~~~~~--~~~~~~~~~~~L~~L~i~~~~  240 (414)
                      +.|+|..+..  ++.+.+.++++|+.|.+..+.
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~  256 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND  256 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence            8888776643  223444556666666665554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.07  E-value=1.8e-11  Score=114.88  Aligned_cols=230  Identities=19%  Similarity=0.155  Sum_probs=148.5

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEec-hHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLD-EQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~~p~L  209 (414)
                      .++++|+  +..+.....+.. .+-+..+|..|+|+.|+++..+  .+..+|+|+.|+|..+.+. .+.+-  +.+.|.|
T Consensus       173 ~ni~~L~--La~N~It~l~~~-~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl  247 (873)
T KOG4194|consen  173 VNIKKLN--LASNRITTLETG-HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSL  247 (873)
T ss_pred             CCceEEe--eccccccccccc-cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhh
Confidence            4778888  554333222222 1223568999999999987765  6677999999999999882 22332  4678899


Q ss_pred             cEEEeeccCC--CceeeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025          210 EDLCFSNCWG--LKHLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  283 (414)
Q Consensus       210 e~L~l~~~~~--~~~~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (414)
                      +.|.+..+..  +++-.+.++.+++.|++..+.  ++.+    ...+..|+.|+++++....--......+++|+.|+|+
T Consensus       248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs  325 (873)
T KOG4194|consen  248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS  325 (873)
T ss_pred             hhhhhhhcCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence            9999887753  344444467899999998774  3332    2367788888888543322122234568999999999


Q ss_pred             ecccchHHHHHHhhcCCCCcEEEecCcccc---ccccccccccceEEeccCCCcee-------eeccCCccceEEeeecc
Q 015025          284 SVYFADNEFNHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCKYLKV-------IDVDAPNLLLFTYEFNP  353 (414)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~---~~~~~~~~~L~~L~l~~c~~L~~-------l~i~~~~L~~l~~~~~~  353 (414)
                      ++.++.-.. +-+..+..|++|.|+.+..-   +.......+|+.|++.+.. |.-       ..-+.+.|+.|.+.|+.
T Consensus       326 ~N~i~~l~~-~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  326 SNRITRLDE-GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             ccccccCCh-hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeecCce
Confidence            988765332 22445677999999887321   2223335677778776542 211       11236778888888877


Q ss_pred             ---cc-eEeeecCCccEEEEEE
Q 015025          354 ---IP-IISINVPCPWKVSFVC  371 (414)
Q Consensus       354 ---~~-~~~~~~~~L~~l~i~~  371 (414)
                         +| ..+..+++|++|++..
T Consensus       404 lk~I~krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  404 LKSIPKRAFSGLEALEHLDLGD  425 (873)
T ss_pred             eeecchhhhccCcccceecCCC
Confidence               33 4445677888888863

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.02  E-value=8.4e-11  Score=109.29  Aligned_cols=105  Identities=16%  Similarity=0.104  Sum_probs=51.9

Q ss_pred             cCceeeEEEeeeCCC---ccccCCccccccccccEEEEecccccC--Cc------cccCCCCcceEEceeEEech---HH
Q 015025          133 NGVRELDFENITDEN---TVYTLPQAIFSANSVTNLRLVWCRLEQ--PF------DSIMLCSLKKLTLERVCLDE---QM  198 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~---~~~~l~~~l~~~~~L~~L~l~~~~l~~--~~------~~~~l~~L~~L~L~~~~~~~---~~  198 (414)
                      .+++++.  +..+..   ....++..+...++|+.|+++++.+..  ..      ....+++|+.|+++++.+..   ..
T Consensus        23 ~~L~~l~--l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          23 LCLQVLR--LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             hhccEEe--ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            3466676  543332   122344444555667777776665441  10      12335567777776666632   22


Q ss_pred             HHHHHhcCCcccEEEeeccCCCce----e--eccCC-CCCcEEEeeecc
Q 015025          199 VQKLASECPLLEDLCFSNCWGLKH----L--CVSKA-SKLKIMEIRSFS  240 (414)
Q Consensus       199 l~~ll~~~p~Le~L~l~~~~~~~~----~--~~~~~-~~L~~L~i~~~~  240 (414)
                      +..+..+ +.|++|++.+|.....    +  .+..+ ++|+.|++.+|.
T Consensus       101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116         101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            2333333 4577777666653210    0  11123 566666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.97  E-value=3.7e-10  Score=72.26  Aligned_cols=35  Identities=31%  Similarity=0.723  Sum_probs=31.0

Q ss_pred             cCCCChHHHHHHhcCCChhhHHhhhccccchhhhh
Q 015025           11 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   45 (414)
Q Consensus        11 i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw   45 (414)
                      |+.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=9.5e-11  Score=101.56  Aligned_cols=169  Identities=19%  Similarity=0.256  Sum_probs=91.6

Q ss_pred             cceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee--ccCCCCCcEEEeeecccccee-----eeecCCCeeEE
Q 015025          184 LKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEI-----VEISVPSLQQL  256 (414)
Q Consensus       184 L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--~~~~~~L~~L~i~~~~~~l~~-----~~~~~p~L~~L  256 (414)
                      |+.|+|+...++...+..+++.|.+|+.|.|.+....+.+.  +..-.+|+.|+++.|. ++.+     +..+|.+|..|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-G~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-GFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-ccchhHHHHHHHhhhhHhhc
Confidence            44444444444444444444445555544444443322211  1111344555554444 2211     12244555555


Q ss_pred             EEEeeCCCCc-eEEeecC-CCCccEEEeeecc--cchHHHHHHhhcCCCCcEEEecCcccccc----ccccccccceEEe
Q 015025          257 TLLFYGARRP-RVVEVAR-SPHLKKLDLVSVY--FADNEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLF  328 (414)
Q Consensus       257 ~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~L~~L~l  328 (414)
                      .++||+...+ +...+.. -++|+.|+++|+.  +....+..+...||+|.+|+|++|-.+..    ....|+.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            5555444221 1111112 3577777777653  33345566788999999999999955544    3445899999999


Q ss_pred             ccCCCce---eeec-cCCccceEEeeecc
Q 015025          329 RSCKYLK---VIDV-DAPNLLLFTYEFNP  353 (414)
Q Consensus       329 ~~c~~L~---~l~i-~~~~L~~l~~~~~~  353 (414)
                      +.|-.+.   -+.+ ..|.|..++..|+-
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEecccc
Confidence            9995541   1222 47888888877753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=5e-10  Score=101.94  Aligned_cols=174  Identities=20%  Similarity=0.186  Sum_probs=123.3

Q ss_pred             ccccccEEEEecccccCCc---cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCC---ceeeccCCCC
Q 015025          158 SANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---KHLCVSKASK  230 (414)
Q Consensus       158 ~~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~---~~~~~~~~~~  230 (414)
                      +.+.|+...|.++.+...+   .+..||+++.|+|+.+-+ ....+..++.-+|+||.|+|+.+...   .......++.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3566778888887766554   456789999999998877 67788888889999999999887642   1222224689


Q ss_pred             CcEEEeeecc---ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEe
Q 015025          231 LKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV  307 (414)
Q Consensus       231 L~~L~i~~~~---~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  307 (414)
                      |+.|.+++|.   .....+...+|+|+.|.+..+............+..|++|+|+++.+.+..-......+|.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            9999999997   2334445678999999998543211122223456789999999988776655566788999999999


Q ss_pred             cCc--ccccc-------ccccccccceEEeccC
Q 015025          308 TRC--CLPGK-------IKISSNQLKNLLFRSC  331 (414)
Q Consensus       308 ~~c--~~~~~-------~~~~~~~L~~L~l~~c  331 (414)
                      +.|  +.+..       ....+++|++|++...
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccC
Confidence            887  22211       1345889999977654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.79  E-value=2.3e-11  Score=115.19  Aligned_cols=252  Identities=16%  Similarity=0.093  Sum_probs=142.5

Q ss_pred             CCccccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee-
Q 015025          146 ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-  223 (414)
Q Consensus       146 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~-  223 (414)
                      .-....+|..++.+..|..|+|+++.+...+ ....-.++-.|+|++++++ .....+.-+...|-.|+|+.+. ++.+ 
T Consensus        89 ~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr-Le~LP  166 (1255)
T KOG0444|consen   89 NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR-LEMLP  166 (1255)
T ss_pred             ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch-hhhcC
Confidence            3445678888888888888888888876554 4555667888888888772 1223333445556666666654 2222 


Q ss_pred             -eccCCCCCcEEEeeecc---ccceeeeecCCCeeEEEEEeeCC-CCceEEeecCCCCccEEEeeecccchHHHHHHhhc
Q 015025          224 -CVSKASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISK  298 (414)
Q Consensus       224 -~~~~~~~L~~L~i~~~~---~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  298 (414)
                       .+..+..|+.|.+++++   .++..++ .+.+|+.|.++.... ...++-++..+.+|..++++.+++.-  +...+-+
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~  243 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYK  243 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhh
Confidence             23345677777777775   2222111 344556666663221 23345556677778888887776543  2233445


Q ss_pred             CCCCcEEEecCccccc--cccccccccceEEeccC------------CCcee------------eecc---CCccceEEe
Q 015025          299 FPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSC------------KYLKV------------IDVD---APNLLLFTY  349 (414)
Q Consensus       299 ~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c------------~~L~~------------l~i~---~~~L~~l~~  349 (414)
                      +++|+.|.|+++..-+  --.....+|+.|+++..            +.|+.            ++-+   ..+|+.|..
T Consensus       244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence            6777777777762211  11111334555554432            11111            1111   112222222


Q ss_pred             eecc---cceEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEEEEEeeE
Q 015025          350 EFNP---IPIISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYK  408 (414)
Q Consensus       350 ~~~~---~~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~~~~~~~  408 (414)
                      ..+.   +|-+.+.++.|++|.+.+..      +..++..+.-++-|+.|++.-+++.+|.|
T Consensus       324 anN~LElVPEglcRC~kL~kL~L~~Nr------LiTLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  324 ANNKLELVPEGLCRCVKLQKLKLDHNR------LITLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hccccccCchhhhhhHHHHHhcccccc------eeechhhhhhcCCcceeeccCCcCccCCC
Confidence            2222   34455567788888876433      33456666777888999999888888866

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.77  E-value=5.3e-11  Score=112.80  Aligned_cols=120  Identities=14%  Similarity=0.091  Sum_probs=56.4

Q ss_pred             cCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc-ccccccccccccceEE
Q 015025          249 SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC-LPGKIKISSNQLKNLL  327 (414)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~~~~~~~~~~~L~~L~  327 (414)
                      ..++|+.|.++++. ........+...+|++|+++.+.++.  +...+..++.|+.|.+.++. ..+.++....+|..|.
T Consensus       243 ~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             hhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence            44555555555221 12233333444555555555555432  22233445666666666552 1222222222333321


Q ss_pred             ecc--CCCceeeec---cCCccceEEeeecc---cceEeeecCCccEEEEEE
Q 015025          328 FRS--CKYLKVIDV---DAPNLLLFTYEFNP---IPIISINVPCPWKVSFVC  371 (414)
Q Consensus       328 l~~--c~~L~~l~i---~~~~L~~l~~~~~~---~~~~~~~~~~L~~l~i~~  371 (414)
                      +-.  .++|+.++-   .|+.|+.+.+..+.   .|..+.-++-|+.|++..
T Consensus       320 vf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlre  371 (1255)
T KOG0444|consen  320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRE  371 (1255)
T ss_pred             HHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccC
Confidence            111  122333331   25666666666655   345556688899998863

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.73  E-value=5e-09  Score=97.34  Aligned_cols=156  Identities=20%  Similarity=0.119  Sum_probs=81.4

Q ss_pred             cccccccccEEEEecccccCCc--cccCC---CCcceEEceeEEechHHHHH---HHhcC-CcccEEEeeccCCCce---
Q 015025          155 AIFSANSVTNLRLVWCRLEQPF--DSIML---CSLKKLTLERVCLDEQMVQK---LASEC-PLLEDLCFSNCWGLKH---  222 (414)
Q Consensus       155 ~l~~~~~L~~L~l~~~~l~~~~--~~~~l---~~L~~L~L~~~~~~~~~l~~---ll~~~-p~Le~L~l~~~~~~~~---  222 (414)
                      .+..+++|++|++++|.+....  ....+   ++|++|+++++.+++.....   .+..+ ++|++|.+.+|.....   
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            3444667777777777664211  11222   44777888777775444333   23445 7778888777764311   


Q ss_pred             -e--eccCCCCCcEEEeeeccc---cceeee---ecCCCeeEEEEEeeCCCC----ceEEeecCCCCccEEEeeecccch
Q 015025          223 -L--CVSKASKLKIMEIRSFSE---EIEIVE---ISVPSLQQLTLLFYGARR----PRVVEVARSPHLKKLDLVSVYFAD  289 (414)
Q Consensus       223 -~--~~~~~~~L~~L~i~~~~~---~l~~~~---~~~p~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~  289 (414)
                       +  .+..+++|+.|++++|.-   .+..+.   ...++|++|+++.+...+    .+...+..+++|+.|+++++.+++
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence             0  122345677777776640   111111   123466666666433211    111123445666777776666655


Q ss_pred             HHHHHHhhcC----CCCcEEEecCc
Q 015025          290 NEFNHLISKF----PSLEDLFVTRC  310 (414)
Q Consensus       290 ~~~~~~~~~~----~~L~~L~l~~c  310 (414)
                      ..+..+...+    +.|++|++.+|
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCC
Confidence            4444443332    56666666666

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.72  E-value=3.2e-08  Score=100.09  Aligned_cols=59  Identities=20%  Similarity=0.133  Sum_probs=32.1

Q ss_pred             ccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeecc
Q 015025          150 YTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNC  217 (414)
Q Consensus       150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~  217 (414)
                      ..+|..+.  ++|+.|.+.+|.++..+  ...++|++|++++|.++.  +..   ..+.|++|.+.+|
T Consensus       214 tsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N  272 (788)
T PRK15387        214 TTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSN  272 (788)
T ss_pred             CcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--ccC---cccccceeeccCC
Confidence            35665544  35677777776665432  234667777777766531  111   1345555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=4.6e-09  Score=95.83  Aligned_cols=176  Identities=20%  Similarity=0.169  Sum_probs=117.3

Q ss_pred             cCceeeEEEeeeCCC-ccccCCccccccccccEEEEecccccCCc---cccCCCCcceEEceeEEechHHHHHHHhcCCc
Q 015025          133 NGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPL  208 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~-~~~~l~~~l~~~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~  208 (414)
                      +++++|+  +...-. ....+-..+-..++|+.|+++.|.+..+.   .-..+++||+|+|++|.++...+..++..||.
T Consensus       146 ~~v~~Ld--LS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  146 PNVRDLD--LSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             Ccceeec--chhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            6777877  433211 12233333445788999999988865543   23468999999999999998999999999999


Q ss_pred             ccEEEeeccCCCcee--eccCCCCCcEEEeeecc---ccceeeeecCCCeeEEEEEeeCCCCce------EEeecCCCCc
Q 015025          209 LEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS---EEIEIVEISVPSLQQLTLLFYGARRPR------VVEVARSPHL  277 (414)
Q Consensus       209 Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~---~~l~~~~~~~p~L~~L~l~~~~~~~~~------~~~~~~~~~L  277 (414)
                      |+.|.+.++......  ...-+..|+.|+++++.   .........+|.|..|.++.+|..+--      ......+|+|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            999999988542221  11235789999999886   111123346788888888865552211      1112457888


Q ss_pred             cEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          278 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      +.|.+..+.+.+.....-+...++|+.|.+..+
T Consensus       304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             eeeecccCccccccccchhhccchhhhhhcccc
Confidence            899888887755443444556777888877665

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.56  E-value=1.7e-08  Score=64.86  Aligned_cols=38  Identities=39%  Similarity=0.737  Sum_probs=31.9

Q ss_pred             ccCCCChHHHHHHhcCCChhhHHhhhccccchhhhhcc
Q 015025           10 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   47 (414)
Q Consensus        10 ~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw~~   47 (414)
                      .+++||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            36789999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.47  E-value=1.9e-07  Score=94.92  Aligned_cols=198  Identities=17%  Similarity=0.118  Sum_probs=95.7

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      .+..+|+  +..  .....+|..+.  ++|+.|++++|.+...+ ...+++|++|+++++.++  .+...+  .+.|+.|
T Consensus       178 ~~~~~L~--L~~--~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP-~~l~~nL~~L~Ls~N~Lt--sLP~~l--~~~L~~L  246 (754)
T PRK15370        178 NNKTELR--LKI--LGLTTIPACIP--EQITTLILDNNELKSLP-ENLQGNIKTLYANSNQLT--SIPATL--PDTIQEM  246 (754)
T ss_pred             cCceEEE--eCC--CCcCcCCcccc--cCCcEEEecCCCCCcCC-hhhccCCCEEECCCCccc--cCChhh--hccccEE
Confidence            4555666  432  23345565442  46888888888766543 223457888888887763  122111  2467777


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeeee-cCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEI-SVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  291 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (414)
                      .+++|.. ..+...-.++|+.|+++++.  +..+.. -.++|++|.++.+... .++..+  .++|+.|+++++.++.-.
T Consensus       247 ~Ls~N~L-~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l--p~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        247 ELSINRI-TELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIR-TLPAHL--PSGITHLNVQSNSLTALP  320 (754)
T ss_pred             ECcCCcc-CcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCccc-cCcccc--hhhHHHHHhcCCccccCC
Confidence            7777653 22221112467777777553  322222 1246777777643321 111111  235666666655544210


Q ss_pred             HHHHhhcCCCCcEEEecCcccccccccc-ccccceEEeccCCCceeeecc-CCccceEEeeecc
Q 015025          292 FNHLISKFPSLEDLFVTRCCLPGKIKIS-SNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNP  353 (414)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~-~~~L~~L~l~~c~~L~~l~i~-~~~L~~l~~~~~~  353 (414)
                        .  ...++|+.|.+.+|... .+... +++|+.|+++++. +..++.. .+.|+.|++.++.
T Consensus       321 --~--~l~~sL~~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~  378 (754)
T PRK15370        321 --E--TLPPGLKTLEAGENALT-SLPASLPPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNA  378 (754)
T ss_pred             --c--cccccceeccccCCccc-cCChhhcCcccEEECCCCC-CCcCChhhcCCcCEEECCCCc
Confidence              0  01245666666555221 12111 2355556555542 3222211 2345555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.45  E-value=4.4e-08  Score=87.11  Aligned_cols=191  Identities=22%  Similarity=0.272  Sum_probs=98.9

Q ss_pred             CCcccceEEEEEEecccCCChhHHHHHHHHHHh--cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCcc
Q 015025          100 LKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFD  177 (414)
Q Consensus       100 ~~~~l~~l~l~~~~~~~~~~~~~~~~w~~~~~~--~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~  177 (414)
                      +...+.++.+.-..     ......+|+..+.+  +.+++.++.--+......++|..+...             .  ..
T Consensus        28 ~~~s~~~l~lsgnt-----~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l-------------~--~a   87 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNT-----FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML-------------S--KA   87 (382)
T ss_pred             ccCceEEEeccCCc-----hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH-------------H--HH
Confidence            34566666665442     22367788888776  455555421111122334444432110             0  02


Q ss_pred             ccCCCCcceEEceeEEe---chHHHHHHHhcCCcccEEEeeccCCCce-----------ee----ccCCCCCcEEEeeec
Q 015025          178 SIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCWGLKH-----------LC----VSKASKLKIMEIRSF  239 (414)
Q Consensus       178 ~~~l~~L~~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~~~~~~~-----------~~----~~~~~~L~~L~i~~~  239 (414)
                      ..++|+|++++|+++.+   ....+..+++.|..|++|.|.+|..-..           ++    +.+-+.|+.+....+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            34567788888888877   4567788889999999999998853110           00    113356666666555


Q ss_pred             c-c--c---ceeeeecCCCeeEEEEEeeCCCCc-e---EEeecCCCCccEEEeeecccchH---HHHHHhhcCCCCcEEE
Q 015025          240 S-E--E---IEIVEISVPSLQQLTLLFYGARRP-R---VVEVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLF  306 (414)
Q Consensus       240 ~-~--~---l~~~~~~~p~L~~L~l~~~~~~~~-~---~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~  306 (414)
                      . .  .   +.......|.|+.+++.+++.... +   ...+..||+|+.|+|..|.++..   .+...++.+|+|+.|.
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            4 1  1   111112345666666664333111 0   11234456666666655555432   2233344455555555


Q ss_pred             ecCc
Q 015025          307 VTRC  310 (414)
Q Consensus       307 l~~c  310 (414)
                      +++|
T Consensus       248 l~dc  251 (382)
T KOG1909|consen  248 LGDC  251 (382)
T ss_pred             cccc
Confidence            5555

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.42  E-value=1.5e-07  Score=58.22  Aligned_cols=34  Identities=32%  Similarity=0.593  Sum_probs=31.6

Q ss_pred             CChHHHHHHhcCCChhhHHhhhccccchhhhhcc
Q 015025           14 LPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVS   47 (414)
Q Consensus        14 LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw~~   47 (414)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.39  E-value=6.4e-07  Score=90.83  Aligned_cols=109  Identities=15%  Similarity=0.058  Sum_probs=61.8

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      .+++.|.  +..+  ....+|..   .++|++|++++|.++..+  ...++|+.|++.++.+.  .+..+   .+.|+.|
T Consensus       222 ~~L~~L~--L~~N--~Lt~LP~l---p~~Lk~LdLs~N~LtsLP--~lp~sL~~L~Ls~N~L~--~Lp~l---p~~L~~L  287 (788)
T PRK15387        222 AHITTLV--IPDN--NLTSLPAL---PPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLT--HLPAL---PSGLCKL  287 (788)
T ss_pred             cCCCEEE--ccCC--cCCCCCCC---CCCCcEEEecCCccCccc--CcccccceeeccCCchh--hhhhc---hhhcCEE
Confidence            3566666  4332  23345542   478999999999877543  23578899988888763  22222   2456777


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEE
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL  259 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~  259 (414)
                      .+.+|.. ..+.. ..++|+.|+++++.  +..+....++|+.|.+.
T Consensus       288 ~Ls~N~L-t~LP~-~p~~L~~LdLS~N~--L~~Lp~lp~~L~~L~Ls  330 (788)
T PRK15387        288 WIFGNQL-TSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAY  330 (788)
T ss_pred             ECcCCcc-ccccc-cccccceeECCCCc--cccCCCCcccccccccc
Confidence            7766642 22221 13567777777663  22222222345555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.28  E-value=8.3e-08  Score=85.40  Aligned_cols=216  Identities=18%  Similarity=0.154  Sum_probs=139.9

Q ss_pred             cccccccEEEEecccccCCc------cccCCCCcceEEceeEEe---chH------HHHHHHhcCCcccEEEeeccCCCc
Q 015025          157 FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCL---DEQ------MVQKLASECPLLEDLCFSNCWGLK  221 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~~---~~~------~l~~ll~~~p~Le~L~l~~~~~~~  221 (414)
                      -...+++.++++++.+....      ....-++|+.-++++...   .++      .+...+.+||+|++|+|+++..-.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            34567888999998765432      233445777777776644   122      234446689999999999986421


Q ss_pred             e----e--eccCCCCCcEEEeeecc---ccce------------eeeecCCCeeEEEEEeeCCCC----ceEEeecCCCC
Q 015025          222 H----L--CVSKASKLKIMEIRSFS---EEIE------------IVEISVPSLQQLTLLFYGARR----PRVVEVARSPH  276 (414)
Q Consensus       222 ~----~--~~~~~~~L~~L~i~~~~---~~l~------------~~~~~~p~L~~L~l~~~~~~~----~~~~~~~~~~~  276 (414)
                      .    +  -++++..|++|.+.+|.   ..-.            ...-+.|+|+.+....+-...    .....+...|.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            1    1  13357899999999997   0001            112356889988887432211    11223556799


Q ss_pred             ccEEEeeecccch---HHHHHHhhcCCCCcEEEecCccccc-------cccccccccceEEeccCCC--------ceeee
Q 015025          277 LKKLDLVSVYFAD---NEFNHLISKFPSLEDLFVTRCCLPG-------KIKISSNQLKNLLFRSCKY--------LKVID  338 (414)
Q Consensus       277 L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~c~~~~-------~~~~~~~~L~~L~l~~c~~--------L~~l~  338 (414)
                      |+.+.+..+.+..   ..+...+.+||+|+.|+|++|....       .....+++|+.|++++|.-        ...+.
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~  266 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK  266 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence            9999999988754   3455668899999999999984322       2233467899999999931        12222


Q ss_pred             ccCCccceEEeeecccc--------eEeeecCCccEEEEEEe
Q 015025          339 VDAPNLLLFTYEFNPIP--------IISINVPCPWKVSFVCK  372 (414)
Q Consensus       339 i~~~~L~~l~~~~~~~~--------~~~~~~~~L~~l~i~~~  372 (414)
                      -..|.|+.+.+.|+.+.        ......|.|++|.+..+
T Consensus       267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence            33678888888887632        12334778888888744

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.20  E-value=9.7e-08  Score=94.94  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=25.8

Q ss_pred             eecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccc
Q 015025          270 EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL  312 (414)
Q Consensus       270 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  312 (414)
                      .+..++.|+.+|++++.++...+....+. |+|++|+++++..
T Consensus       447 e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  447 ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            34556677777777776665554443333 6777777777644

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.17  E-value=2.1e-06  Score=87.40  Aligned_cols=216  Identities=13%  Similarity=0.116  Sum_probs=127.2

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      .+++.|+  +..+  .-..+|..+.  ++|+.|++++|.+...+ ....++|+.|+|++|.+..  ++.-+  ...|+.|
T Consensus       199 ~~L~~L~--Ls~N--~LtsLP~~l~--~nL~~L~Ls~N~LtsLP-~~l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L  267 (754)
T PRK15370        199 EQITTLI--LDNN--ELKSLPENLQ--GNIKTLYANSNQLTSIP-ATLPDTIQEMELSINRITE--LPERL--PSALQSL  267 (754)
T ss_pred             cCCcEEE--ecCC--CCCcCChhhc--cCCCEEECCCCccccCC-hhhhccccEEECcCCccCc--CChhH--hCCCCEE
Confidence            4788888  5443  2346776554  58999999999876543 1223579999999998741  22112  2479999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeeeec-CCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEIS-VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  291 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~-~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (414)
                      ++++|. +..+.-.-.++|+.|++++|.  +..+... .++|+.|.++.+... .++..  ..++|+.|++.++.++.- 
T Consensus       268 ~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~--Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~--l~~sL~~L~Ls~N~Lt~L-  340 (754)
T PRK15370        268 DLFHNK-ISCLPENLPEELRYLSVYDNS--IRTLPAHLPSGITHLNVQSNSLT-ALPET--LPPGLKTLEAGENALTSL-  340 (754)
T ss_pred             ECcCCc-cCccccccCCCCcEEECCCCc--cccCcccchhhHHHHHhcCCccc-cCCcc--ccccceeccccCCccccC-
Confidence            998664 343332223589999998884  3333222 246788888744332 22221  246888888888776541 


Q ss_pred             HHHHhhcCCCCcEEEecCcccccccccc-ccccceEEeccCCCceeeeccC-CccceEEeeeccc---c----eEeeecC
Q 015025          292 FNHLISKFPSLEDLFVTRCCLPGKIKIS-SNQLKNLLFRSCKYLKVIDVDA-PNLLLFTYEFNPI---P----IISINVP  362 (414)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~c~~~~~~~~~-~~~L~~L~l~~c~~L~~l~i~~-~~L~~l~~~~~~~---~----~~~~~~~  362 (414)
                       ...+  .++|+.|++++|... .+... .++|+.|++++|. |..++-.. ..|+.+++.++.+   |    ......+
T Consensus       341 -P~~l--~~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~  415 (754)
T PRK15370        341 -PASL--PPELQVLDVSKNQIT-VLPETLPPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGP  415 (754)
T ss_pred             -Chhh--cCcccEEECCCCCCC-cCChhhcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCC
Confidence             1111  368888988887432 22222 3578888888763 44443221 2355555555542   2    1122346


Q ss_pred             CccEEEEEE
Q 015025          363 CPWKVSFVC  371 (414)
Q Consensus       363 ~L~~l~i~~  371 (414)
                      .+..+.+..
T Consensus       416 ~l~~L~L~~  424 (754)
T PRK15370        416 QPTRIIVEY  424 (754)
T ss_pred             CccEEEeeC
Confidence            777777763

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=1.5e-06  Score=75.88  Aligned_cols=182  Identities=17%  Similarity=0.153  Sum_probs=131.1

Q ss_pred             cCceeeEEEeeeC-CCccccCCccccccccccEEEEecccccCCccc--cCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITD-ENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDS--IMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~-~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~--~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      ..+++++  +..+ -.+..++...+..+++|+.|+|+.|.+..+...  ....+|++|.|.+...+.......+...|.+
T Consensus        71 ~~v~elD--L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELD--LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhh--cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            5788888  6433 234456666777899999999999988765421  3556899999999999888888999999999


Q ss_pred             cEEEeeccCC----CceeeccC-CCCCcEEEeeecc----ccceeeeecCCCeeEEEEEeeCC-CCceEEeecCCCCccE
Q 015025          210 EDLCFSNCWG----LKHLCVSK-ASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLKK  279 (414)
Q Consensus       210 e~L~l~~~~~----~~~~~~~~-~~~L~~L~i~~~~----~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~~  279 (414)
                      ++|+++.+..    ++.-.+.. -+.++.|+...|.    .....+....|++..+-+..|+. ..........+|.+.-
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999887732    11111111 1678888888887    22233445678999888875433 2223334556788888


Q ss_pred             EEeeecccchHHHHHHhhcCCCCcEEEecCccccccc
Q 015025          280 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI  316 (414)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~  316 (414)
                      |.+..+++...+...-+..||.|..|.+..+|..+.+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            9998888877666677899999999999999776654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.06  E-value=1.3e-06  Score=72.46  Aligned_cols=38  Identities=29%  Similarity=0.255  Sum_probs=15.8

Q ss_pred             cCCCCccEEEeeecccch--HHHHHHhhcCCCCcEEEecC
Q 015025          272 ARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLFVTR  309 (414)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~  309 (414)
                      ..+|+|+.|++.++.++.  ..-..++..+|+|+.|+-..
T Consensus       110 ~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  110 SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            345666666665554432  12233455666666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.06  E-value=4.5e-08  Score=88.58  Aligned_cols=101  Identities=17%  Similarity=0.098  Sum_probs=64.6

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHH-HHhcCCcccE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQK-LASECPLLED  211 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~-ll~~~p~Le~  211 (414)
                      +.+++++  ..  ...-..+|..++.+.+|..|++..+.+...+.+.+|..|+.++...+++.  .+++ +....+.|..
T Consensus       183 ~~L~~ld--~~--~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~--~lpae~~~~L~~l~v  256 (565)
T KOG0472|consen  183 KRLKHLD--CN--SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE--MLPAEHLKHLNSLLV  256 (565)
T ss_pred             HHHHhcc--cc--hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH--hhHHHHhccccccee
Confidence            3455555  22  23456777777777777777777777666666777778888887777662  2322 3446778888


Q ss_pred             EEeeccCCCceee--ccCCCCCcEEEeeecc
Q 015025          212 LCFSNCWGLKHLC--VSKASKLKIMEIRSFS  240 (414)
Q Consensus       212 L~l~~~~~~~~~~--~~~~~~L~~L~i~~~~  240 (414)
                      |++.++.. +++.  +.-+.+|..|+++++.
T Consensus       257 LDLRdNkl-ke~Pde~clLrsL~rLDlSNN~  286 (565)
T KOG0472|consen  257 LDLRDNKL-KEVPDEICLLRSLERLDLSNND  286 (565)
T ss_pred             eecccccc-ccCchHHHHhhhhhhhcccCCc
Confidence            88877753 3322  1124667788888765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.04  E-value=7.9e-07  Score=87.55  Aligned_cols=194  Identities=21%  Similarity=0.279  Sum_probs=108.5

Q ss_pred             cCceeeEEEeeeCCC-ccccCCccccccccccEEEEecc-cc-cCC-----ccccCCCCcceEEceeEE-echHHHHHHH
Q 015025          133 NGVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVWC-RL-EQP-----FDSIMLCSLKKLTLERVC-LDEQMVQKLA  203 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~-~~~~l~~~l~~~~~L~~L~l~~~-~l-~~~-----~~~~~l~~L~~L~L~~~~-~~~~~l~~ll  203 (414)
                      ++++++.  +..+.. ....+-.....|+.|+.|++++| .. ...     .....+++|+.|++..+. +++..+..+.
T Consensus       188 ~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  188 PLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             chhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            6777777  443322 11223345556888888888873 21 111     134567888888888887 5778888888


Q ss_pred             hcCCcccEEEeeccCCCceeec----cCCCCCcEEEeeecc----ccceeeeecCCCeeEEEEEeeCC------------
Q 015025          204 SECPLLEDLCFSNCWGLKHLCV----SKASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGA------------  263 (414)
Q Consensus       204 ~~~p~Le~L~l~~~~~~~~~~~----~~~~~L~~L~i~~~~----~~l~~~~~~~p~L~~L~l~~~~~------------  263 (414)
                      ..||.||.|.+..|..+....+    ..|++|++|++..|.    ..+..+...+|+|+.|.+.....            
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~  345 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL  345 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence            8888888888887875433221    247888888888877    11333334567766666542110            


Q ss_pred             -----CCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccccccccceEEeccCCCce
Q 015025          264 -----RRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLK  335 (414)
Q Consensus       264 -----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~L~  335 (414)
                           +.........+++++.+.+..+...+......+..||+|. ..+..+      ...+.+++.|.+..|..+.
T Consensus       346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------~~~~~~l~~L~l~~~~~~t  415 (482)
T KOG1947|consen  346 LTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------LCRSDSLRVLNLSDCRLVT  415 (482)
T ss_pred             hccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH------hccCCccceEecccCcccc
Confidence                 0111122345566666666555543333334455555552 222111      0112226777777776553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.99  E-value=2.2e-06  Score=86.45  Aligned_cols=151  Identities=18%  Similarity=0.241  Sum_probs=101.5

Q ss_pred             ccccEEEEeccccc-CCc---cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025          160 NSVTNLRLVWCRLE-QPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  235 (414)
Q Consensus       160 ~~L~~L~l~~~~l~-~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  235 (414)
                      .+|++|++++...- ..+   ....||+|++|.+.+..+..+.+..+..++|+|..|++++++.-.-..++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            55777777764321 111   34568999999999998866678888889999999999888643334455677777777


Q ss_pred             eeecc-ccceee--eecCCCeeEEEEEeeCCCCceEE------eecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEE
Q 015025          236 IRSFS-EEIEIV--EISVPSLQQLTLLFYGARRPRVV------EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  306 (414)
Q Consensus       236 i~~~~-~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  306 (414)
                      +.+-. ..-..+  ...+.+|+.|+++..........      .-..+|+|+.||.++..+..+.+..++...|+|+...
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            76443 110111  12577888888884332111100      0124899999999999998888888888888888887


Q ss_pred             ecCc
Q 015025          307 VTRC  310 (414)
Q Consensus       307 l~~c  310 (414)
                      +-+|
T Consensus       282 ~~~~  285 (699)
T KOG3665|consen  282 ALDC  285 (699)
T ss_pred             hhhh
Confidence            6654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.97  E-value=3.3e-07  Score=91.32  Aligned_cols=206  Identities=18%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             ccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce-eeccCCCCCcEEEeee
Q 015025          160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKASKLKIMEIRS  238 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~-~~~~~~~~L~~L~i~~  238 (414)
                      ++|+.|....|.+........-.+|++++++.+.++  .+...+..|++||.+.+..+....- ..+....+|+.|.+..
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence            344444444444432212222346888888887773  3446678899999988877653110 1111123344443333


Q ss_pred             cc-ccceeeeecCCCeeEEEEEeeCCC-------------------------CceEEeecCCCCccEEEeeecccchHHH
Q 015025          239 FS-EEIEIVEISVPSLQQLTLLFYGAR-------------------------RPRVVEVARSPHLKKLDLVSVYFADNEF  292 (414)
Q Consensus       239 ~~-~~l~~~~~~~p~L~~L~l~~~~~~-------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (414)
                      |. +.+.........|++|++..+...                         ......-...+.|+.|.+.++.+++..+
T Consensus       297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~  376 (1081)
T KOG0618|consen  297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF  376 (1081)
T ss_pred             hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence            32 111111112223333333311110                         0000011234567777777777777664


Q ss_pred             HHHhhcCCCCcEEEecCcccc---ccccccccccceEEeccCCCceeeec---cCCccceEEeeecc---cceEeeecCC
Q 015025          293 NHLISKFPSLEDLFVTRCCLP---GKIKISSNQLKNLLFRSCKYLKVIDV---DAPNLLLFTYEFNP---IPIISINVPC  363 (414)
Q Consensus       293 ~~~~~~~~~L~~L~l~~c~~~---~~~~~~~~~L~~L~l~~c~~L~~l~i---~~~~L~~l~~~~~~---~~~~~~~~~~  363 (414)
                       ..+.++++||.|+|..+..-   .....++..|+.|++++. +|+.++.   .++.|+.+..+++.   +| ....++.
T Consensus       377 -p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~q  453 (1081)
T KOG0618|consen  377 -PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQ  453 (1081)
T ss_pred             -hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence             45778888888888876221   122233556666666654 2333331   23444444444443   22 2334555


Q ss_pred             ccEEEEE
Q 015025          364 PWKVSFV  370 (414)
Q Consensus       364 L~~l~i~  370 (414)
                      |+.++++
T Consensus       454 L~~lDlS  460 (1081)
T KOG0618|consen  454 LKVLDLS  460 (1081)
T ss_pred             ceEEecc
Confidence            5555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.95  E-value=1.1e-06  Score=86.64  Aligned_cols=127  Identities=23%  Similarity=0.280  Sum_probs=88.0

Q ss_pred             ccccccEEEEecccccCC----ccccCCCCcceEEceeE-Ee---chHHHHHHHhcCCcccEEEeeccCCCceeecc---
Q 015025          158 SANSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERV-CL---DEQMVQKLASECPLLEDLCFSNCWGLKHLCVS---  226 (414)
Q Consensus       158 ~~~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~L~~~-~~---~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~---  226 (414)
                      .++.|+.|.+.+|.....    .....+++|+.|+++++ ..   .......+...|++|+.|++.+|..+....+.   
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            379999999999853322    25678999999999873 22   33344557788999999999999865543322   


Q ss_pred             -CCCCCcEEEeeecc----ccceeeeecCCCeeEEEEEeeCCC--CceEEeecCCCCccEEEeee
Q 015025          227 -KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGAR--RPRVVEVARSPHLKKLDLVS  284 (414)
Q Consensus       227 -~~~~L~~L~i~~~~----~~l~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~  284 (414)
                       .|++|+.|.+..|.    ..+..+...+|+|++|++++|...  .........|++++.|.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence             38999999988887    234445568899999999965442  11111234577777766543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.89  E-value=1.4e-06  Score=72.20  Aligned_cols=41  Identities=22%  Similarity=0.184  Sum_probs=18.1

Q ss_pred             CCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccc
Q 015025          273 RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP  313 (414)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  313 (414)
                      .+|+|++|.++++.+.+-.-...+..+|+|+.|++.+||..
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            46777777777776654222344567788888888887554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.73  E-value=4.7e-07  Score=72.71  Aligned_cols=151  Identities=16%  Similarity=0.104  Sum_probs=82.5

Q ss_pred             cccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCc-eeeccCCCCCc
Q 015025          155 AIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK-HLCVSKASKLK  232 (414)
Q Consensus       155 ~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~-~~~~~~~~~L~  232 (414)
                      .++.+.+.+.|.++++.++..+ ....+.+|+.|++++++++  .+..-++..|.|+.|++..+.... .-.+.++|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence            4566667777777777765433 4556777777777777763  344446667777777766543211 11123456677


Q ss_pred             EEEeeecccc---ceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecC
Q 015025          233 IMEIRSFSEE---IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  309 (414)
Q Consensus       233 ~L~i~~~~~~---l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  309 (414)
                      .|++..+.-.   +.--...+..|+.|+++++. .+..+-.++++.+|+.|.+..+++..  +..-+..+..|++|++++
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence            7666655301   11111123445556666322 24445556666777777666655432  111223345577777776


Q ss_pred             c
Q 015025          310 C  310 (414)
Q Consensus       310 c  310 (414)
                      +
T Consensus       183 n  183 (264)
T KOG0617|consen  183 N  183 (264)
T ss_pred             c
Confidence            5

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=2.5e-05  Score=68.47  Aligned_cols=152  Identities=16%  Similarity=0.095  Sum_probs=101.9

Q ss_pred             cccEEEEecccccCCc----cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCC---ceeeccCCCCCc
Q 015025          161 SVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGL---KHLCVSKASKLK  232 (414)
Q Consensus       161 ~L~~L~l~~~~l~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~---~~~~~~~~~~L~  232 (414)
                      .+.-|.+.+|.+....    ....+..++.++|.++.+ +.+.+..++.+.|.|+.|+|+.+...   +.+.. ...+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~-p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL-PLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc-cccceE
Confidence            4455666677655433    344577899999999999 77889999999999999999877642   33332 246899


Q ss_pred             EEEeeecc---ccceeeeecCCCeeEEEEEeeCC---CCceEEeecCCCCccEEEeeeccc-chHHHHHHhhcCCCCcEE
Q 015025          233 IMEIRSFS---EEIEIVEISVPSLQQLTLLFYGA---RRPRVVEVARSPHLKKLDLVSVYF-ADNEFNHLISKFPSLEDL  305 (414)
Q Consensus       233 ~L~i~~~~---~~l~~~~~~~p~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L  305 (414)
                      .|.+.+..   ...+....+.|.++.|.++.+..   ...-...-+.-+.+++|+...|.. .+.....+..-|||+..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            99988876   23333444778888888875422   000111112345777887766643 234456677789999999


Q ss_pred             EecCcccc
Q 015025          306 FVTRCCLP  313 (414)
Q Consensus       306 ~l~~c~~~  313 (414)
                      .+..||..
T Consensus       205 ~v~e~PlK  212 (418)
T KOG2982|consen  205 FVCEGPLK  212 (418)
T ss_pred             eeecCccc
Confidence            99998543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.51  E-value=0.00039  Score=72.44  Aligned_cols=80  Identities=23%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             ccccEEEEecccccCCccccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCCceee--ccCCCCCcEEEe
Q 015025          160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIMEI  236 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--~~~~~~L~~L~i  236 (414)
                      ...+.+.+.++.+........++.|++|-+.++.. -.......+...|.|..|++++|.....+.  ++++-+||.|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            34555555555443333344555666666655531 011111223446666666666655544432  233445555555


Q ss_pred             eec
Q 015025          237 RSF  239 (414)
Q Consensus       237 ~~~  239 (414)
                      .++
T Consensus       603 ~~t  605 (889)
T KOG4658|consen  603 SDT  605 (889)
T ss_pred             cCC
Confidence            544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.42  E-value=1.7e-05  Score=77.59  Aligned_cols=204  Identities=19%  Similarity=0.138  Sum_probs=102.1

Q ss_pred             hcCCcccceEEEEEEecccCCChhHHHHH--HHHHHhcCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCC
Q 015025           98 CKLKFCIQKFRLFLTFLDVKGSAPIVDRW--IRLAVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP  175 (414)
Q Consensus        98 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~w--~~~~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~  175 (414)
                      .....++..|+......   .....+...  +...+ .+.+.+.  +.........-|-.++...+|++|.+.+|.+...
T Consensus        51 g~~g~~~~~f~a~~s~~---ads~vl~qLq~i~d~l-qkt~~lk--l~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~  124 (1096)
T KOG1859|consen   51 GLSGAPVDYFRAYVSDN---ADSRVLEQLQRILDFL-QKTKVLK--LLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA  124 (1096)
T ss_pred             ccCCCCCceeEEecCCc---ccchHHHHHHHHHHHH-hhheeee--ecccCCCCCCCCceeccccceeeEEecCcchhhh
Confidence            34567777777654421   111122211  11112 3555555  4323333333388889999999999999976542


Q ss_pred             ccccCCC-CcceE--------------------------------EceeEEechHHHHHHHhcCCcccEEEeeccCCCce
Q 015025          176 FDSIMLC-SLKKL--------------------------------TLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH  222 (414)
Q Consensus       176 ~~~~~l~-~L~~L--------------------------------~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~  222 (414)
                      .+...++ +|++|                                +.+.|..  ..++.-+.-.|.|+.|+|+.+...+.
T Consensus       125 ~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v  202 (1096)
T KOG1859|consen  125 KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKV  202 (1096)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhh
Confidence            2111111 23333                                2222222  01111122245666666666654333


Q ss_pred             eeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCC
Q 015025          223 LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS  301 (414)
Q Consensus       223 ~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      -.+..|++|++|+++.+- -.+..+....-.|..|.+.++..  .....+.++.+|+.||+++|-+.+..-...+..+..
T Consensus       203 ~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l--~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~  280 (1096)
T KOG1859|consen  203 DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL--TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS  280 (1096)
T ss_pred             HHHHhcccccccccccchhccccccchhhhhheeeeecccHH--HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHH
Confidence            334446677777766542 11122222122366666663222  112234567777777777776655444444555666


Q ss_pred             CcEEEecCcc
Q 015025          302 LEDLFVTRCC  311 (414)
Q Consensus       302 L~~L~l~~c~  311 (414)
                      |+.|+|.+||
T Consensus       281 L~~L~LeGNP  290 (1096)
T KOG1859|consen  281 LIVLWLEGNP  290 (1096)
T ss_pred             HHHHhhcCCc
Confidence            7778887764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.36  E-value=0.00011  Score=64.75  Aligned_cols=59  Identities=17%  Similarity=0.146  Sum_probs=32.9

Q ss_pred             ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-cccccccceEEeccC
Q 015025          271 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSC  331 (414)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c  331 (414)
                      +.-...|++++++++.++.-  ..-..-.|.++.|.++.+.....- ....++|..|++++.
T Consensus       280 ~dTWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGN  339 (490)
T ss_pred             cchHhhhhhccccccchhhh--hhhhhhccceeEEeccccceeeehhhhhcccceEeecccc
Confidence            34456677788877766431  122334677777777766322110 223567777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.12  E-value=8.1e-05  Score=77.37  Aligned_cols=199  Identities=18%  Similarity=0.181  Sum_probs=92.7

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLED  211 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  211 (414)
                      +.++.|+  +.. .....++|..+..+-+|++|++++..+...| ....+..|.+|++..+..- +.+..+....++|+.
T Consensus       571 ~~LrVLD--Ls~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  571 PLLRVLD--LSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLRV  646 (889)
T ss_pred             cceEEEE--CCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc-ccccchhhhcccccE
Confidence            4444444  332 2334566666666666666666665554333 4555666666666555431 112344445666777


Q ss_pred             EEeeccC-CCceee---ccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEee--CC-CCceEEeecCCCCccEEEeee
Q 015025          212 LCFSNCW-GLKHLC---VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFY--GA-RRPRVVEVARSPHLKKLDLVS  284 (414)
Q Consensus       212 L~l~~~~-~~~~~~---~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~--~~-~~~~~~~~~~~~~L~~L~l~~  284 (414)
                      |.+.... ..+...   +..+.+|+.+++..+...+..-...+++|.++...-.  +. .......+..+.+|+.|.+..
T Consensus       647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~  726 (889)
T KOG4658|consen  647 LRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD  726 (889)
T ss_pred             EEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence            7665443 111111   1234445544444332100000012333332222100  11 112233456678888888877


Q ss_pred             cccchHHHH-----HHhhcCCCCcEEEecCcccccccc--ccccccceEEeccCCCce
Q 015025          285 VYFADNEFN-----HLISKFPSLEDLFVTRCCLPGKIK--ISSNQLKNLLFRSCKYLK  335 (414)
Q Consensus       285 ~~~~~~~~~-----~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l~~c~~L~  335 (414)
                      +.+.+....     .....|+++..+.+..|.......  .-.|+|+.|.+..|+.++
T Consensus       727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e  784 (889)
T KOG4658|consen  727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE  784 (889)
T ss_pred             CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence            766432110     001125555566666664443332  335677777777775543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.11  E-value=0.00043  Score=60.16  Aligned_cols=40  Identities=20%  Similarity=0.116  Sum_probs=24.5

Q ss_pred             cCCCCcceEEceeEEe---chHHHHHHHhcCCcccEEEeeccC
Q 015025          179 IMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNCW  218 (414)
Q Consensus       179 ~~l~~L~~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~~~  218 (414)
                      ..||+|++.+|+.+.+   ..+.+..+++....|++|.+++|.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            4566666666666666   334455556666666666666553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.04  E-value=8e-05  Score=65.49  Aligned_cols=126  Identities=17%  Similarity=0.164  Sum_probs=60.9

Q ss_pred             CCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEe
Q 015025          182 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLF  260 (414)
Q Consensus       182 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~  260 (414)
                      ..|+.++|+.+.++  .++.-..-.|.++.|+++.+.....-.+..+++|+.|+++++. ....-+...+-|.++|.+..
T Consensus       284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            34666666666552  1111122356666666665544322223345666666666553 22222233445556665552


Q ss_pred             eCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          261 YGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      +.. + ....++.+=+|..|++.++++..-.-.+-+.++|.|+.|.+.++|
T Consensus       362 N~i-E-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  362 NKI-E-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhH-h-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            111 1 111223344566666666665543333445566666666666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.94  E-value=1.5e-05  Score=64.29  Aligned_cols=117  Identities=18%  Similarity=0.079  Sum_probs=55.4

Q ss_pred             cccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccC
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK  227 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~  227 (414)
                      -.++|..+.+++.|+.|+++-+++...+ +++.||.|+.|+|..++.++..+..-+..+                     
T Consensus        68 ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m---------------------  126 (264)
T KOG0617|consen   68 IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM---------------------  126 (264)
T ss_pred             hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHH---------------------
Confidence            3455555555555555555544443333 445555555555555544333333222222                     


Q ss_pred             CCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccc
Q 015025          228 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  288 (414)
Q Consensus       228 ~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (414)
                       ..|+.|.++++. +.+..-.-.+.+|+.|.+.++.. -..+..++.+.+|++|++.+++++
T Consensus       127 -~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  127 -TTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             -HHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccceee
Confidence             344444444443 11111111334445444442221 234445566778888888877654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.88  E-value=0.00036  Score=70.75  Aligned_cols=103  Identities=16%  Similarity=0.071  Sum_probs=46.7

Q ss_pred             hcCceeeEEEeeeCCCccccCCccccc-cccccEEEEecccccCCc---cccCCCCcceEEceeEEechHHHHHHHhcCC
Q 015025          132 ENGVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECP  207 (414)
Q Consensus       132 ~~~l~~L~~~l~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p  207 (414)
                      +.++++|+  +.+........|..++. +|+|++|.+.+-.+....   ...+||+|+.|++++++++.-   ..++..+
T Consensus       121 r~nL~~Ld--I~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk  195 (699)
T KOG3665|consen  121 RQNLQHLD--ISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK  195 (699)
T ss_pred             HHhhhhcC--ccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence            35555555  44332223333333333 455666665554432221   234556666666665555221   2344555


Q ss_pred             cccEEEeeccCCCcee---eccCCCCCcEEEeeec
Q 015025          208 LLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSF  239 (414)
Q Consensus       208 ~Le~L~l~~~~~~~~~---~~~~~~~L~~L~i~~~  239 (414)
                      +|+.|.+.+-+.....   .+-++++|+.|+|+..
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            5555555443322111   1223455555555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.86  E-value=0.0022  Score=60.23  Aligned_cols=92  Identities=22%  Similarity=0.267  Sum_probs=38.7

Q ss_pred             CcccEEEeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecc
Q 015025          207 PLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  286 (414)
Q Consensus       207 p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  286 (414)
                      +.|++|.+.+|..+..+.    ++|+.|.+....  ...+..-.++|+.|.+..............-.++|+.|.+.++.
T Consensus        94 ~nLe~L~Ls~Cs~L~sLP----~sLe~L~L~~n~--~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~  167 (426)
T PRK15386         94 EGLEKLTVCHCPEISGLP----ESVRSLEIKGSA--TDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS  167 (426)
T ss_pred             hhhhheEccCcccccccc----cccceEEeCCCC--CcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence            356666666664443221    356666654321  22222223456666553111000000000012467777776554


Q ss_pred             cchHHHHHHhhcC-CCCcEEEecC
Q 015025          287 FADNEFNHLISKF-PSLEDLFVTR  309 (414)
Q Consensus       287 ~~~~~~~~~~~~~-~~L~~L~l~~  309 (414)
                      ...     ....+ .+|+.|.+..
T Consensus       168 ~i~-----LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        168 NII-----LPEKLPESLQSITLHI  186 (426)
T ss_pred             ccc-----CcccccccCcEEEecc
Confidence            321     11112 3577777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.84  E-value=0.00017  Score=48.69  Aligned_cols=34  Identities=24%  Similarity=0.159  Sum_probs=15.1

Q ss_pred             cccEEEEecccccCCc--cccCCCCcceEEceeEEe
Q 015025          161 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL  194 (414)
Q Consensus       161 ~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~  194 (414)
                      +|++|++++|.+...+  .+.++++|++|+++++.+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l   37 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL   37 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc
Confidence            3455555555433222  233444455554444443

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.77  E-value=7.2e-06  Score=74.67  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=16.2

Q ss_pred             HHhHHHHhccCcceeEEEEEEEE
Q 015025          380 YLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       380 ~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      +..++..++++++|++|.+..++
T Consensus       517 lq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  517 LQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhCChhhccccceeEEEecCCc
Confidence            45566778888888877776554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.75  E-value=9e-05  Score=67.56  Aligned_cols=57  Identities=19%  Similarity=0.135  Sum_probs=40.2

Q ss_pred             CceeeEEEeeeCCCccccCCccccc-cccccEEEEecccccCCc--cccCCCCcceEEcee-EEe
Q 015025          134 GVRELDFENITDENTVYTLPQAIFS-ANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLER-VCL  194 (414)
Q Consensus       134 ~l~~L~~~l~~~~~~~~~l~~~l~~-~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~-~~~  194 (414)
                      ...++.  +.  ...-..+|...|. .++|+.|+|++|.+....  .+.++++|.+|.+.+ +.+
T Consensus        68 ~tveir--Ld--qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   68 ETVEIR--LD--QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             cceEEE--ec--cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            444555  43  2345677877776 789999999998865433  677888888888887 555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=9.9e-05  Score=64.25  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=68.5

Q ss_pred             CCCCcEEEeeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEE
Q 015025          228 ASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  305 (414)
Q Consensus       228 ~~~L~~L~i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  305 (414)
                      +.+.+.|+.++|.  +..+  ...+|.|+.|.++-+..  .....+..|.+|++|.|..|.+.+-.-...+.++|+|++|
T Consensus        18 l~~vkKLNcwg~~--L~DIsic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCG--LDDISICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCC--ccHHHHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3466677777774  4433  34788999998883222  2334567899999999999998886667789999999999


Q ss_pred             EecCcccccccc--------ccccccceEE
Q 015025          306 FVTRCCLPGKIK--------ISSNQLKNLL  327 (414)
Q Consensus       306 ~l~~c~~~~~~~--------~~~~~L~~L~  327 (414)
                      +|..||-...-+        ...|+|+.|+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999875544322        2367777774

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.66  E-value=0.0066  Score=57.16  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=13.7

Q ss_pred             cccEEEeeccCCCceeeccCCCCCcEEEeeec
Q 015025          208 LLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  239 (414)
Q Consensus       208 ~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~  239 (414)
                      .|++|.+.+|..+..+.-.-.++|+.|.+.+|
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             CCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence            35555555554433222110135555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.64  E-value=0.00038  Score=46.97  Aligned_cols=38  Identities=24%  Similarity=0.334  Sum_probs=18.3

Q ss_pred             cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ..+++|+.|+++++.+..-. ...+..+++|++|++++|
T Consensus        22 ~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   22 SNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred             cCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence            34555555555555443211 123445555555555554

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.48  E-value=0.00029  Score=64.38  Aligned_cols=75  Identities=13%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             CCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee
Q 015025          146 ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL  223 (414)
Q Consensus       146 ~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~  223 (414)
                      ...-.++|..+.  +.-+.++|..|.++..+  .+..+++|++|+|+.+.++.-...+ +.+.+.|-+|.+-+++.++++
T Consensus        55 ~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   55 GKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             CCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHhhcCCchhhh
Confidence            334455555443  24577888888876654  6789999999999999984322222 345677777777775555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.47  E-value=0.0017  Score=56.64  Aligned_cols=73  Identities=14%  Similarity=0.084  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHh--cCceeeEEEeeeCCCccccCCc-------cccccccccEEEEecccccCCc------cccCCCCcce
Q 015025          122 IVDRWIRLAVE--NGVRELDFENITDENTVYTLPQ-------AIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKK  186 (414)
Q Consensus       122 ~~~~w~~~~~~--~~l~~L~~~l~~~~~~~~~l~~-------~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~  186 (414)
                      ....|+...++  ++++..+|+=.+......+++.       .+..|++|+..+|+.|.+....      ....-..|++
T Consensus        45 EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~H  124 (388)
T COG5238          45 EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVH  124 (388)
T ss_pred             HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCcee
Confidence            67788887766  4555555221111222333333       2345777777777776654322      2233456777


Q ss_pred             EEceeEEe
Q 015025          187 LTLERVCL  194 (414)
Q Consensus       187 L~L~~~~~  194 (414)
                      |.+++|-+
T Consensus       125 L~l~NnGl  132 (388)
T COG5238         125 LKLNNNGL  132 (388)
T ss_pred             EEeecCCC
Confidence            77777655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.39  E-value=0.00039  Score=60.18  Aligned_cols=108  Identities=23%  Similarity=0.153  Sum_probs=69.3

Q ss_pred             CCccccccccccEEEEecccccCCccccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCC--Cceee-ccC
Q 015025          152 LPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG--LKHLC-VSK  227 (414)
Q Consensus       152 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~--~~~~~-~~~  227 (414)
                      +....-....|+.|++.++.++....+..+|+||+|.++.++. ....+..++..||+|++|+++++..  +..+. +..
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            3333334567788888888777655677788999999999855 3345666677889999999998864  12211 224


Q ss_pred             CCCCcEEEeeecc-ccce----eeeecCCCeeEEEEE
Q 015025          228 ASKLKIMEIRSFS-EEIE----IVEISVPSLQQLTLL  259 (414)
Q Consensus       228 ~~~L~~L~i~~~~-~~l~----~~~~~~p~L~~L~l~  259 (414)
                      +++|.+|.+..|. .++.    .+..-+|+|++|+-.
T Consensus       115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            5678888887776 1111    112245666665544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.38  E-value=0.0018  Score=62.00  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=16.0

Q ss_pred             cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      +.+++++.|+++.+.+++...   +....+++.|+++++
T Consensus       252 ~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n  287 (394)
T COG4886         252 GNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccccceecccccccccccc---ccccCccCEEeccCc
Confidence            344445555555444433211   334445555555443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.10  E-value=0.0018  Score=57.81  Aligned_cols=37  Identities=30%  Similarity=0.613  Sum_probs=34.8

Q ss_pred             cccccCCCC----hHHHHHHhcCCChhhHHhhhccccchhh
Q 015025            7 AMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQ   43 (414)
Q Consensus         7 ~~d~i~~LP----devL~~I~s~L~~~~~~~~~~vskrWr~   43 (414)
                      +.|-|+.||    |++...|||||+..+++.+-.|||+|++
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            368899999    9999999999999999999999999986

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.07  E-value=0.0031  Score=60.48  Aligned_cols=167  Identities=19%  Similarity=0.112  Sum_probs=107.0

Q ss_pred             ccccccEEEEecccccCCccccCCC--CcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeecc-CCCCCcEE
Q 015025          158 SANSVTNLRLVWCRLEQPFDSIMLC--SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS-KASKLKIM  234 (414)
Q Consensus       158 ~~~~L~~L~l~~~~l~~~~~~~~l~--~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~-~~~~L~~L  234 (414)
                      ..+.++.|.+.++.+...+......  +|+.|+++++.+..  +..-+..+|.|+.|.+.+|+........ ..+.|+.|
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            3467888888888776655334443  89999999988742  2233567999999999888753332222 46889999


Q ss_pred             Eeeeccccceeeee--cCCC-eeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          235 EIRSFSEEIEIVEI--SVPS-LQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       235 ~i~~~~~~l~~~~~--~~p~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      .++++.  +..+..  ..++ |+++.++.+. .......+..+.++..+.+..+.+...  .......++++.|++..+.
T Consensus       192 ~ls~N~--i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         192 DLSGNK--ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             eccCCc--cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeec--cchhccccccceecccccc
Confidence            998884  444433  2444 8888888432 222333445677777777666655431  2445677889999999873


Q ss_pred             ccccc-cccccccceEEeccC
Q 015025          312 LPGKI-KISSNQLKNLLFRSC  331 (414)
Q Consensus       312 ~~~~~-~~~~~~L~~L~l~~c  331 (414)
                      ....- .....+++.|++++-
T Consensus       267 i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         267 ISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             ccccccccccCccCEEeccCc
Confidence            22211 334567888877664

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.02  E-value=0.0075  Score=50.36  Aligned_cols=79  Identities=20%  Similarity=0.205  Sum_probs=44.7

Q ss_pred             ccccccEEEEecccccCCc--cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCCce-----eeccCCC
Q 015025          158 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKH-----LCVSKAS  229 (414)
Q Consensus       158 ~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~~~-----~~~~~~~  229 (414)
                      ..++|.+|.+++|+++...  ....+|+|++|.|.++.+ .-+.++.+ ..||.|++|.+.+++..+.     ..+..+|
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp  140 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP  140 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhcccCceeEEEEecC
Confidence            4567777777777655432  334567777777777766 33444443 3477777777766653211     1222345


Q ss_pred             CCcEEEee
Q 015025          230 KLKIMEIR  237 (414)
Q Consensus       230 ~L~~L~i~  237 (414)
                      +|+.|+..
T Consensus       141 ~l~~LDF~  148 (233)
T KOG1644|consen  141 SLRTLDFQ  148 (233)
T ss_pred             cceEeehh
Confidence            55555544

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.99  E-value=0.011  Score=31.91  Aligned_cols=25  Identities=48%  Similarity=0.832  Sum_probs=22.2

Q ss_pred             CcceEEceeEEe-chHHHHHHHhcCC
Q 015025          183 SLKKLTLERVCL-DEQMVQKLASECP  207 (414)
Q Consensus       183 ~L~~L~L~~~~~-~~~~l~~ll~~~p  207 (414)
                      +||+|+|..+.+ +++.++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 5568999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.93  E-value=0.0013  Score=56.91  Aligned_cols=84  Identities=23%  Similarity=0.252  Sum_probs=40.7

Q ss_pred             CCCCCcEEEeeecc----ccceeeeecCCCeeEEEEEeeCCCC-ceEEeecCCCCccEEEeeecccch--HHHHHHhhcC
Q 015025          227 KASKLKIMEIRSFS----EEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKF  299 (414)
Q Consensus       227 ~~~~L~~L~i~~~~----~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~  299 (414)
                      .+|+||.|.++.+.    ..+......+|+|+++.++.+.... ...-.+..+.+|..|++..+..+.  +.-.+++..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll  142 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL  142 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence            45666666666552    2333334455677766666322211 011112345566666666554332  2223344555


Q ss_pred             CCCcEEEecCc
Q 015025          300 PSLEDLFVTRC  310 (414)
Q Consensus       300 ~~L~~L~l~~c  310 (414)
                      |+|+.|+-.++
T Consensus       143 ~~L~~LD~~dv  153 (260)
T KOG2739|consen  143 PSLKYLDGCDV  153 (260)
T ss_pred             hhhcccccccc
Confidence            66666655544

>PLN03150 hypothetical protein; Provisional

Probab=95.70  E-value=0.012  Score=59.76  Aligned_cols=104  Identities=16%  Similarity=0.089  Sum_probs=67.4

Q ss_pred             CCcEEEeeecc--ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEe
Q 015025          230 KLKIMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFV  307 (414)
Q Consensus       230 ~L~~L~i~~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  307 (414)
                      .++.|++.++.  ..+..-...+++|+.|+++.+.....++..++.+++|+.|+++++.+++.. ...+.++++|+.|+|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEEEC
Confidence            36777777664  112222236788999999865555556656788999999999998887544 334677899999999


Q ss_pred             cCcccccccccc----ccccceEEeccCCCc
Q 015025          308 TRCCLPGKIKIS----SNQLKNLLFRSCKYL  334 (414)
Q Consensus       308 ~~c~~~~~~~~~----~~~L~~L~l~~c~~L  334 (414)
                      ++|.....+...    ..++..+++.+++.+
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCccc
Confidence            988544433322    224445566555443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.57  E-value=0.0058  Score=54.25  Aligned_cols=36  Identities=17%  Similarity=0.368  Sum_probs=31.1

Q ss_pred             ccccCCCChHHHHHHhc-----CCChhhHHhhhccccchhh
Q 015025            8 MDRISELPTFIIHHLMS-----YLSAKEVARTSVLSKKWNQ   43 (414)
Q Consensus         8 ~d~i~~LPdevL~~I~s-----~L~~~~~~~~~~vskrWr~   43 (414)
                      -+.|..||||||..||.     .++.+++.++|+|||.|+.
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            34578999999999996     5677999999999999984

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.57  E-value=0.035  Score=46.47  Aligned_cols=107  Identities=20%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             ccccEEEEecccccCCccccCCCCcceEEceeEEec--hHHHHHHHhcCCcccEEEeeccCC--Ccee-eccCCCCCcEE
Q 015025          160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD--EQMVQKLASECPLLEDLCFSNCWG--LKHL-CVSKASKLKIM  234 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~ll~~~p~Le~L~l~~~~~--~~~~-~~~~~~~L~~L  234 (414)
                      .....++|+.+.+.....+..++.|.+|.|.++.++  +..+.   ...|+|..|.+.++..  ++++ ...+||+|+.|
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            345667777777666556777888999999988873  22333   3467788888877653  1111 22346666666


Q ss_pred             EeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccc
Q 015025          235 EIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  288 (414)
Q Consensus       235 ~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (414)
                      ++-+++  ..                 ....+....+-.+|+|+.||+....-.
T Consensus       119 tll~Np--v~-----------------~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  119 TLLGNP--VE-----------------HKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             eecCCc--hh-----------------cccCceeEEEEecCcceEeehhhhhHH
Confidence            665554  00                 001112223346788888887665443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.54  E-value=0.0058  Score=37.96  Aligned_cols=15  Identities=47%  Similarity=0.468  Sum_probs=7.5

Q ss_pred             HhcCCcccEEEeecc
Q 015025          203 ASECPLLEDLCFSNC  217 (414)
Q Consensus       203 l~~~p~Le~L~l~~~  217 (414)
                      +.++++|+.|++++|
T Consensus        20 l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen   20 LSNLPNLETLNLSNN   34 (44)
T ss_dssp             GTTCTTSSEEEETSS
T ss_pred             HhCCCCCCEEEecCC
Confidence            344555555555544

...

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=95.33  E-value=0.017  Score=37.20  Aligned_cols=38  Identities=16%  Similarity=0.099  Sum_probs=32.9

Q ss_pred             cCCccEEEEE-EeeecchhHHHhHHHHhccCcceeEEEEEE
Q 015025          361 VPCPWKVSFV-CKGVLNTHWYLKLKKFLGVSKQIESLKLSL  400 (414)
Q Consensus       361 ~~~L~~l~i~-~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~  400 (414)
                      .++|+.+.+. +.|..++  +..++++++|++.|+++.|++
T Consensus        13 ~s~Lk~v~~~~f~g~~~e--~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen   13 LSHLKFVEIKGFRGEENE--LEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             hheeEEEEEEeeeCcHHH--HHHHHHHHhhhhhhcEEEEEC
Confidence            4689999998 7777777  899999999999999999863

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.0045  Score=51.63  Aligned_cols=90  Identities=19%  Similarity=0.208  Sum_probs=60.1

Q ss_pred             cCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCCCceeec--
Q 015025          151 TLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWGLKHLCV--  225 (414)
Q Consensus       151 ~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~--  225 (414)
                      .+|..-..-..++.++-+++.+....  ....++.++.|.+.+|.. ++..+..+-.-.|+|+.|.|++|+.+++-.+  
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            44443222234555555555433221  356678888888888877 8888888888889999999999988766432  


Q ss_pred             -cCCCCCcEEEeeecc
Q 015025          226 -SKASKLKIMEIRSFS  240 (414)
Q Consensus       226 -~~~~~L~~L~i~~~~  240 (414)
                       ..+++|+.|.+.+-+
T Consensus       172 L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHhhhhHHHHhcCch
Confidence             346777777776443

>PLN03150 hypothetical protein; Provisional

Probab=94.44  E-value=0.037  Score=56.27  Aligned_cols=80  Identities=20%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             CeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEe
Q 015025          252 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLF  328 (414)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l  328 (414)
                      .++.|.+..++.....+..+..+++|+.|+|+++.+.+.. ...+..+++|+.|+|++|.....+   ...+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcC-ChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3667777755554455556778889999999888776543 233577889999999988544333   334678888888


Q ss_pred             ccCC
Q 015025          329 RSCK  332 (414)
Q Consensus       329 ~~c~  332 (414)
                      +++.
T Consensus       498 s~N~  501 (623)
T PLN03150        498 NGNS  501 (623)
T ss_pred             cCCc
Confidence            8764

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.14  E-value=0.031  Score=52.03  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=33.2

Q ss_pred             cCCCChHHHHHHhcCCC-hhhHHhhhccccchhhhhcc
Q 015025           11 ISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQLYVS   47 (414)
Q Consensus        11 i~~LPdevL~~I~s~L~-~~~~~~~~~vskrWr~lw~~   47 (414)
                      .++||+|+|..|..+|+ .-|++|.+.|||.||.....
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            67899999999999996 77999999999999986544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.04  E-value=0.0035  Score=54.88  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             ccccccEEEEecccccCCccccCCCCcceEEceeEEec-hHHHHHHHhcCCcccEEEeeccCCCce-------eeccCCC
Q 015025          158 SANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSNCWGLKH-------LCVSKAS  229 (414)
Q Consensus       158 ~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~~p~Le~L~l~~~~~~~~-------~~~~~~~  229 (414)
                      .++.|+.|.|+-|.+........|.+|+.|.|..+.+. -..+. .+.+.|+|+.|-|..++..+.       .-+.-+|
T Consensus        39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            45667777777776665445667777777777777772 22332 356778888877777665321       1122467


Q ss_pred             CCcEEE
Q 015025          230 KLKIME  235 (414)
Q Consensus       230 ~L~~L~  235 (414)
                      +|+.|+
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            777764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.89  E-value=0.071  Score=33.02  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=22.7

Q ss_pred             CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          275 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ++|+.|+++++.+++-  ...+.++++|+.|++++|
T Consensus         1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCccc--CchHhCCCCCCEEEecCC
Confidence            4677888888777652  223677888888888876

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.63  E-value=0.0056  Score=59.05  Aligned_cols=36  Identities=22%  Similarity=0.144  Sum_probs=17.3

Q ss_pred             cccccEEEEecccccCCcc-ccCCCCcceEEceeEEe
Q 015025          159 ANSVTNLRLVWCRLEQPFD-SIMLCSLKKLTLERVCL  194 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~L~~~~~  194 (414)
                      +++|+.|++..+.+..... ...+++|+.|+++++.+
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I  130 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI  130 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheecccccc
Confidence            4445555555554443332 34455555555555544

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=93.03  E-value=0.11  Score=36.09  Aligned_cols=40  Identities=15%  Similarity=0.151  Sum_probs=33.2

Q ss_pred             cCCccEEEEE-EeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          361 VPCPWKVSFV-CKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       361 ~~~L~~l~i~-~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      .++|+.+.|. +.|..++  ++.+++++++++.|++++|....
T Consensus         4 ~~~Lk~v~i~~f~g~~~e--~~~~~~il~~a~~Lk~~~i~~~~   44 (72)
T smart00579        4 LSSLEVLEIKGYRGTEEE--KELVKYFLENAPCLKKLTISVET   44 (72)
T ss_pred             hheEEEEEEEeccCcHHH--HHHHHHHHhcchhheEEEEEeec
Confidence            4578999998 5555556  89999999999999999998865

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.41  E-value=0.017  Score=48.31  Aligned_cols=43  Identities=26%  Similarity=0.288  Sum_probs=18.6

Q ss_pred             CCCCccEEEeeeccc-chHHHHHHhhcCCCCcEEEecCcccccc
Q 015025          273 RSPHLKKLDLVSVYF-ADNEFNHLISKFPSLEDLFVTRCCLPGK  315 (414)
Q Consensus       273 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~~~~  315 (414)
                      .++.++.|.+..+.. .+..+..+..-.|+|+.|+|++|+.++.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            344444444443332 2233333333444555555555544443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=91.53  E-value=0.0047  Score=59.41  Aligned_cols=154  Identities=19%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             cCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce-eeccCC
Q 015025          151 TLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCVSKA  228 (414)
Q Consensus       151 ~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~-~~~~~~  228 (414)
                      .+|..+.+...|++|+|+.+.+...+ ....|| |+.|.+++++++.  +..-+...+.|..|+.+.|....- -.+..+
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l  188 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL  188 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc--CCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence            44455555556666666665544333 222333 6666666665521  111122345555555555542111 112234


Q ss_pred             CCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHH--hhcCCCCcEE
Q 015025          229 SKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHL--ISKFPSLEDL  305 (414)
Q Consensus       229 ~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L  305 (414)
                      .+|+.|.+..+. ..+..-.. .-.|..|+++ |.....+++.+..+..|+.|.|.+|-+..-. .++  -....-.|+|
T Consensus       189 ~slr~l~vrRn~l~~lp~El~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNPLqSPP-AqIC~kGkVHIFKyL  265 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLEDLPEELC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNPLQSPP-AQICEKGKVHIFKYL  265 (722)
T ss_pred             HHHHHHHHhhhhhhhCCHHHh-CCceeeeecc-cCceeecchhhhhhhhheeeeeccCCCCCCh-HHHHhccceeeeeee
Confidence            566666666554 11111111 2346777777 5555667777777888888888777654321 111  1223346667


Q ss_pred             EecCc
Q 015025          306 FVTRC  310 (414)
Q Consensus       306 ~l~~c  310 (414)
                      ..+-|
T Consensus       266 ~~qA~  270 (722)
T KOG0532|consen  266 STQAC  270 (722)
T ss_pred             cchhc
Confidence            77666

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.45  E-value=0.03  Score=55.75  Aligned_cols=143  Identities=21%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             cccccEEEEecccccCCc---cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEe-----------eccCC----
Q 015025          159 ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCF-----------SNCWG----  219 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l-----------~~~~~----  219 (414)
                      .++++.|++-...-..+.   ....|.+||+|.+.+|.+ ...++..+-   .+||+|.-           ..|.+    
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHH---HhhhhhhhhccHHHHHHHHHHhcccccc
Confidence            456666776654433322   455788999999999988 322332221   12333321           11111    


Q ss_pred             ----------------Ccee--eccCCCCCcEEEeeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccE
Q 015025          220 ----------------LKHL--CVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKK  279 (414)
Q Consensus       220 ----------------~~~~--~~~~~~~L~~L~i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~  279 (414)
                                      +..+  .+.-+|.|++|+++.+.  ++.+  ...+|.|++|+++++....-......+|. |..
T Consensus       160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~  236 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL  236 (1096)
T ss_pred             chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhhhHHHHhcccccccccccchhccccccchhhhh-hee
Confidence                            0000  01125788888888774  3332  23788899999885443222222223344 888


Q ss_pred             EEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          280 LDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      |.+.+|.++.   ...+.++.+|+.|+++.|
T Consensus       237 L~lrnN~l~t---L~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  237 LNLRNNALTT---LRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             eeecccHHHh---hhhHHhhhhhhccchhHh
Confidence            8888877644   223567888999999876

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.07  E-value=0.058  Score=52.06  Aligned_cols=127  Identities=22%  Similarity=0.088  Sum_probs=76.0

Q ss_pred             cccccccEEEEecccccC-CccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025          157 FSANSVTNLRLVWCRLEQ-PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  235 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  235 (414)
                      ..+..++.+.+..+.+.. ......+.+|+.|++.++.+.  .+...+..+++|+.|+++++....-..+..++.|+.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN  146 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence            345666777777666554 224677888999999988872  23333566889999999888654444444566788888


Q ss_pred             eeeccccceeeee--cCCCeeEEEEEeeCCCCceEEe-ecCCCCccEEEeeecccc
Q 015025          236 IRSFSEEIEIVEI--SVPSLQQLTLLFYGARRPRVVE-VARSPHLKKLDLVSVYFA  288 (414)
Q Consensus       236 i~~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  288 (414)
                      +.++.  +..+..  ..++|+.++++++.... +.-. ...+.+++.+.+.++.+.
T Consensus       147 l~~N~--i~~~~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNL--ISDISGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCc--chhccCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchh
Confidence            88775  222221  25566666666332211 1110 245666666666665543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=89.97  E-value=0.14  Score=50.71  Aligned_cols=39  Identities=26%  Similarity=0.542  Sum_probs=36.2

Q ss_pred             ccccccCCCChHHHHHHhcCCChhhHHhhhccccchhhh
Q 015025            6 VAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   44 (414)
Q Consensus         6 ~~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~l   44 (414)
                      ...|-|+.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            457899999999999999999999999999999999864

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=89.34  E-value=0.02  Score=55.29  Aligned_cols=66  Identities=17%  Similarity=0.130  Sum_probs=28.4

Q ss_pred             ccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccC
Q 015025          150 YTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  218 (414)
Q Consensus       150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~  218 (414)
                      ..+|..++.| -|+.|-++++.++..+ ..+..+.|..|+.+.|.+  ..+..=+.+...|+.|.+..+.
T Consensus       134 S~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~  200 (722)
T KOG0532|consen  134 SHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNH  200 (722)
T ss_pred             hcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhh
Confidence            3444444444 2555555555443322 233445555555555543  1222223334444454444443

>PF13013 F-box-like_2: F-box-like domain

Probab=88.69  E-value=0.26  Score=37.26  Aligned_cols=30  Identities=13%  Similarity=0.237  Sum_probs=27.4

Q ss_pred             ccCCCChHHHHHHhcCCChhhHHhhhcccc
Q 015025           10 RISELPTFIIHHLMSYLSAKEVARTSVLSK   39 (414)
Q Consensus        10 ~i~~LPdevL~~I~s~L~~~~~~~~~~vsk   39 (414)
                      .+.+||+|++..||.+-+..+.......|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            478999999999999999999988888887

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.31  E-value=0.31  Score=38.09  Aligned_cols=11  Identities=36%  Similarity=0.836  Sum_probs=3.8

Q ss_pred             cCCcccEEEee
Q 015025          205 ECPLLEDLCFS  215 (414)
Q Consensus       205 ~~p~Le~L~l~  215 (414)
                      +|+.|+.+.+.
T Consensus        10 ~~~~l~~i~~~   20 (129)
T PF13306_consen   10 NCSNLESITFP   20 (129)
T ss_dssp             T-TT--EEEET
T ss_pred             CCCCCCEEEEC
Confidence            34455555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.86  E-value=0.61  Score=24.33  Aligned_cols=21  Identities=19%  Similarity=0.233  Sum_probs=11.6

Q ss_pred             CCcceEEceeEEechHHHHHH
Q 015025          182 CSLKKLTLERVCLDEQMVQKL  202 (414)
Q Consensus       182 ~~L~~L~L~~~~~~~~~l~~l  202 (414)
                      ++|++|+|+++.++++....+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            566667776666655555543

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.84  E-value=0.74  Score=24.63  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=8.4

Q ss_pred             CCcceEEceeEEe-chHHHHH
Q 015025          182 CSLKKLTLERVCL-DEQMVQK  201 (414)
Q Consensus       182 ~~L~~L~L~~~~~-~~~~l~~  201 (414)
                      ++|+.|++++|.. ++.++..
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~   22 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQA   22 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHH
Confidence            3444444444432 4444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	3e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 51/362 (14%), Positives = 115/362 (31%), Gaps = 56/362 (15%)

Query: 11  ISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQ--------LYVSFPILDFDQNYF--F 59
                  +I  +M+Y+   K+    S++ ++W +        + ++             F
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 60  PGASRLDYGSFCVRKQNYSF-SETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKG 118
           P    L       R   ++   E    ++      +    +           L  +  + 
Sbjct: 73  PNLRSLK-LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ----------LKSVHFRR 121

Query: 119 SAPIVDRWIRLAVENG---VRELDF---ENITDENTVYTLPQAIFSANSVTNLRLVWCRL 172
              + D  +    +     +  L        T +     L   +     +  L +     
Sbjct: 122 M-IVSDLDLDRLAKARADDLETLKLDKCSGFTTD----GLLSIVTHCRKIKTLLMEESSF 176

Query: 173 EQPFDSIMLCSLKKLT-LERVCLD--------EQMVQKLASECPLLEDLCFSNCWGLKHL 223
            +     +    +  T LE +            + ++ +A  C  L  +   +   L+ +
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236

Query: 224 CV-SKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEV--ARSPHLK 278
                A+ L+     S +E+I + E  +++   ++L  L      P  + +    +  ++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296

Query: 279 KLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVID 338
           KLDL+       +   LI K P+LE L            I    L+  L + CK LK + 
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNV-------IGDRGLEV-LAQYCKQLKRLR 348

Query: 339 VD 340
           ++
Sbjct: 349 IE 350

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 37/262 (14%), Positives = 87/262 (33%), Gaps = 42/262 (16%)

Query: 111 LTFLDVKGSAPIVDRWIRLAVE-NGVRELDFEN-ITDENTVYTLPQAIFSANSVTNLRLV 168
           +  LD+  +    +    L  +   +  L+  N I D      L         +  LR+ 
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDR----GLEVLAQYCKQLKRLRIE 350

Query: 169 WCRLEQPFDSIM--------------LCSLKKLTLERVCLDEQMVQKLASECPLLEDLCF 214
               EQ  +                    L+ + +    +  + ++ + +    L D   
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410

Query: 215 SNCWGLKHLC-----------VSKASKLKIMEIRSFSEEIEIVEISV-----PSLQQLTL 258
                 + +            +    KL+          +  + +S      P+++ + L
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

Query: 259 LFYGARRPRVVEVARS-PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK 317
            + G     ++E +R  P+L+KL++    F++      ++K PSL  L+V       +  
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY----RAS 526

Query: 318 ISSNQLKNLLFRSCKYLKVIDV 339
           ++   L  +  R    +++I  
Sbjct: 527 MTGQDLMQMA-RPYWNIELIPS 547

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 60/340 (17%), Positives = 104/340 (30%), Gaps = 80/340 (23%)

Query: 11  ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPILDFDQNYFFPGASRLDYGSF 70
              LP  ++  + S L   E+ + S + K+W +L  S   L                   
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL-ASDESL-----------------WQ 50

Query: 71  CVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLA 130
            +     +    V   +            L   +  FR   +F+D   +       ++  
Sbjct: 51  TLDLTGKNLHPDVTGRL------------LSQGVIAFRCPRSFMDQPLAEHFSPFRVQH- 97

Query: 131 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIM-----LCSLK 185
                 +L    I       TL   +   + + NL L   RL    D I+       +L 
Sbjct: 98  -----MDLSNSVIEVS----TLHGILSQCSKLQNLSLEGLRL---SDPIVNTLAKNSNLV 145

Query: 186 KLTLERVC-LDEQMVQKLASECPLLEDLCFSNCW-----GLKHLCVSKASKLKIMEIRSF 239
           +L L       E  +Q L S C  L++L  S C+      ++      +  +  + +  +
Sbjct: 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

Query: 240 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF 299
            +      +    L  L              V R P+L  LDL       N+      + 
Sbjct: 206 RK-----NLQKSDLSTL--------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246

Query: 300 PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDV 339
             L+ L ++RC       I    L  L       LK + V
Sbjct: 247 NYLQHLSLSRCY-----DIIPETLLEL--GEIPTLKTLQV 279

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 8e-07
 Identities = 61/400 (15%), Positives = 122/400 (30%), Gaps = 112/400 (28%)

Query: 105 QKFRLFLTFLDVKGSAPIVDR-----------WI--RLAVENGVRELDFEN-ITDENTVY 150
              RLF T L  K    +V +           ++   +  E     +     I   + +Y
Sbjct: 63  GTLRLFWTLLS-KQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 151 TLPQAIFSANSVTNLRLVW------CRLEQPFDSIMLCSLK---K--LTLERVCLDEQMV 199
              Q +F+  +V+ L+           L +P  ++++  +    K  + L+ VCL  ++ 
Sbjct: 121 NDNQ-VFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALD-VCLSYKVQ 177

Query: 200 QKLA--------SECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVP 251
            K+           C   E +       L+ L              S + ++ I  I   
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-- 231

Query: 252 SLQQLTLLFYGARRPRVV----EVARSPHLKKLD-----LV-----SVY----------- 286
              +L  L         +     V  +      +     L+      V            
Sbjct: 232 --AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 287 --------FADNEFNHLISKF--PSLEDLFVTRC-CLPGKIKISSNQLKNLLFRSCKYLK 335
                      +E   L+ K+     +DL        P ++ I +  +++ L       K
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWK 348

Query: 336 VIDVDA-------------PNLLLFTYE----FN---PIPIISINVPCPW--KVSFVCKG 373
            ++ D              P      ++    F     IP I +++   W   +      
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMV 406

Query: 374 VLNTHWYLKLKKFLGVSKQIESLKLSLYSTKVCYKIHIID 413
           V+N     KL K+  V KQ +   +S+ S  +  K+ + +
Sbjct: 407 VVN-----KLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 52/376 (13%), Positives = 122/376 (32%), Gaps = 53/376 (14%)

Query: 9   DRISELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQ--------LYVSFPILDFDQNYF- 58
                 P  ++ H+ S++   K+    S++ K W +        +++             
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 59  -FPGASRLDYGSFCVRKQNYSFSETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK 117
            FP    ++      +     F+     +  +V   +         +++ RL    +   
Sbjct: 64  RFPKVRSVE---LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120

Query: 118 GSAPIVDRWIRLAVENGVRELDF---ENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQ 174
               I   +         + L     E  + +     L     +  ++  L L    ++ 
Sbjct: 121 CLELIAKSFKNF------KVLVLSSCEGFSTD----GLAAIAATCRNLKELDLRESDVDD 170

Query: 175 PFDSIMLC------SLKKLTLERVC--LDEQMVQKLASECPLLEDLCFSNCWGLKHLC-- 224
                +        SL  L +  +   +    +++L + CP L+ L  +    L+ L   
Sbjct: 171 VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230

Query: 225 VSKASKLKIMEIRSFSEEI-----EIVEISVPSLQQLTLL--FYGARRPRVVEVARS-PH 276
           + +A +L+ +    ++ E+       + +++   ++L  L  F+ A    +  V      
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 277 LKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKV 336
           L  L+L        +   L+ + P L+ L+V          I    L+ L   +CK L+ 
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-------IEDAGLEVLA-STCKDLRE 342

Query: 337 IDVDAPNLLLFTYEFN 352
           + V      +      
Sbjct: 343 LRVFPSEPFVMEPNVA 358

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 40/279 (14%), Positives = 90/279 (32%), Gaps = 51/279 (18%)

Query: 111 LTFLDVKGSAPIVDRWIRLAVENGVRELD---FENITDENTVYTLPQAIFSANSVTNLRL 167
           L  L +  + P+      L     + EL    +      +    L  A+     +  L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 168 VWCRLEQPFDSI--MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWG------ 219
            W  +     ++  +   L  L L    +    + KL  +CP L+ L   +         
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 220 -------LKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR---VV 269
                  L+ L V  +    +    + +E+  +V +S     +L  + Y  R+     ++
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVS-MGCPKLESVLYFCRQMTNAALI 390

Query: 270 EVARS-PHLKKLDLV----------SVYFADNEFNHLISKFPSLEDLFVTRC-CLPGKIK 317
            +AR+ P++ +  L           ++   D  F  ++     L  L ++          
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEY 450

Query: 318 ISSN--QLKNL--------------LFRSCKYLKVIDVD 340
           I +   +++ L              +   C  L+ +++ 
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 7/34 (20%), Positives = 19/34 (55%)

Query: 11 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 44
          ++ LP  +  +++S+LS  ++ +    +  WN+ 
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.6
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.58
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.47
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.45
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.43
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.41
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.4
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.4
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.4
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.4
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.4
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.34
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.3
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.29
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.23
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.2
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.2
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.2
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.1
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.1
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.1
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.03
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.02
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.02
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.99
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.98
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.92
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.69
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.53
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.51
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.43
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.39
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.34
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.91
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.88
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.82
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.73
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.7
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.54
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.51
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.46
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.1
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.94
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.82
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.66
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.95
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.82
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.38

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=8.5e-26  Score=226.48  Aligned_cols=200  Identities=11%  Similarity=0.090  Sum_probs=105.3

Q ss_pred             cccccC----CCChHHHHHHhcCC-ChhhHHhhhccccchhhhhcccCe-EEeeCCCCCCCCCC--CccCc---c----c
Q 015025            7 AMDRIS----ELPTFIIHHLMSYL-SAKEVARTSVLSKKWNQLYVSFPI-LDFDQNYFFPGASR--LDYGS---F----C   71 (414)
Q Consensus         7 ~~d~i~----~LPdevL~~I~s~L-~~~~~~~~~~vskrWr~lw~~~~~-l~~~~~~~~~~~~~--~~~~~---~----~   71 (414)
                      +.|+++    +||||++.+||+|| +.+|+++++.|||||++++...+. +.+. ..+......  ..+++   .    |
T Consensus         5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~~   83 (592)
T 3ogk_B            5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPNLRSLKLKGK   83 (592)
T ss_dssp             -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTTCSEEEEECS
T ss_pred             hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCCCeEEEecCC
Confidence            456666    89999999999999 899999999999999987543322 1111 100000000  00000   0    0


Q ss_pred             cccccch-hh-hhHHHHHHHHHHHHHhhhcCCcccceEEEEEEecccCCChhHHHHHHHHHHhcCceeeEEEeeeCC-Cc
Q 015025           72 VRKQNYS-FS-ETVKKFMDFVDASLVRFCKLKFCIQKFRLFLTFLDVKGSAPIVDRWIRLAVENGVRELDFENITDE-NT  148 (414)
Q Consensus        72 ~~~~~~~-~~-~~~~~~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~w~~~~~~~~l~~L~~~l~~~~-~~  148 (414)
                      ....... .. .........+....    ...+.++.+.+....     ..+....|+......++++|+  +..+. ..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~--L~~~~~~~  152 (592)
T 3ogk_B           84 PRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLK--LDKCSGFT  152 (592)
T ss_dssp             CGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEE--EESCEEEE
T ss_pred             cchhhcccccccccccchHHHHHHH----hhCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEE--CcCCCCcC
Confidence            0000000 00 00000011122111    123567777666331     122344455554444588888  54332 22


Q ss_pred             cccCCccccccccccEEEEecccccCCc------cccCCCCcceEEceeEEec---hHHHHHHHhcCCcccEEEeeccC
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLD---EQMVQKLASECPLLEDLCFSNCW  218 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~~p~Le~L~l~~~~  218 (414)
                      ...++.....|++|++|++++|.+....      ....+++|++|+++++.++   .+.+..++.+||+|++|.+.+|.
T Consensus       153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            2334444456788888888888754321      2345778888888777663   56777777788888888887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=8.3e-27  Score=233.89  Aligned_cols=38  Identities=18%  Similarity=0.476  Sum_probs=29.4

Q ss_pred             cccccCCCChHHHHHHhcCCC-hhhHHhhhccccchhhh
Q 015025            7 AMDRISELPTFIIHHLMSYLS-AKEVARTSVLSKKWNQL   44 (414)
Q Consensus         7 ~~d~i~~LPdevL~~I~s~L~-~~~~~~~~~vskrWr~l   44 (414)
                      +.|.+++||||||.+||+||| .+|++++++|||||+++
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            468999999999999999999 99999999999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=2e-24  Score=201.00  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=35.2

Q ss_pred             ccccCCCChHHHHHHhcCCChhhHHhhhccccchhhhh
Q 015025            8 MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   45 (414)
Q Consensus         8 ~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw   45 (414)
                      +..+++||||++.+||+||+.+|+++++.|||+|+++.
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~   43 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.60  E-value=2.4e-15  Score=140.19  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=36.7

Q ss_pred             ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee-eccCCCCCcEE
Q 015025          156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CVSKASKLKIM  234 (414)
Q Consensus       156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~-~~~~~~~L~~L  234 (414)
                      +..+++|++|++++|.+...+....+++|++|+++++.+....  . +..+++|+.|++.+|.....+ .+..+++|+.|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            3345555555555554443333445555555555555442111  0 344555555555555332221 12234455555


Q ss_pred             Eeeec
Q 015025          235 EIRSF  239 (414)
Q Consensus       235 ~i~~~  239 (414)
                      ++.+|
T Consensus       161 ~l~~~  165 (347)
T 4fmz_A          161 TVTES  165 (347)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            55444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.59  E-value=7e-15  Score=135.84  Aligned_cols=198  Identities=17%  Similarity=0.173  Sum_probs=112.6

Q ss_pred             HhcCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          131 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       131 ~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      ...++++|+  +..+..  ..+|..++.+++|++|++++|.+...+ ....+++|++|+++++.++  .+...+.++++|
T Consensus        79 ~~~~l~~L~--L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L  152 (328)
T 4fcg_A           79 TQPGRVALE--LRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRL  152 (328)
T ss_dssp             TSTTCCEEE--EESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTC
T ss_pred             cccceeEEE--ccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCC
Confidence            347888898  654333  488888889999999999999877444 5678999999999999885  334446789999


Q ss_pred             cEEEeeccCCCceeec-----------cCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCc
Q 015025          210 EDLCFSNCWGLKHLCV-----------SKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL  277 (414)
Q Consensus       210 e~L~l~~~~~~~~~~~-----------~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L  277 (414)
                      +.|++.+|...+.+..           .++++|+.|++++|. ..+......+++|++|+++.+... .++..+..+++|
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L  231 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL  231 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence            9999999876544321           124556666665553 111111123455555555533221 122223445555


Q ss_pred             cEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccccc---ccccccceEEeccCCCcee
Q 015025          278 KKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKV  336 (414)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~L~~  336 (414)
                      +.|+++++.+.... ...+..+++|+.|++++|.....+.   ..+++|+.|++++|+.+..
T Consensus       232 ~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          232 EELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             CEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            55555544433221 1123344555555555543333222   1234445555555444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.58  E-value=9.9e-16  Score=153.29  Aligned_cols=84  Identities=14%  Similarity=0.140  Sum_probs=56.2

Q ss_pred             hcCceeeEEEeeeC-CCccccCCccccccccccEEEEecccccCCc------cccCCCCcceEEceeEE--echHHHHHH
Q 015025          132 ENGVRELDFENITD-ENTVYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC--LDEQMVQKL  202 (414)
Q Consensus       132 ~~~l~~L~~~l~~~-~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~--~~~~~l~~l  202 (414)
                      .+++++|+  +..+ ......++.....|++|++|++++|.+....      ....+++|++|+++++.  ++...+..+
T Consensus       129 ~~~L~~L~--L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          129 FKNFKVLV--LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             CTTCCEEE--EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred             CCCCcEEe--CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence            36888888  5543 2222335554556888888888887754321      22366788888888775  466777777


Q ss_pred             HhcCCcccEEEeecc
Q 015025          203 ASECPLLEDLCFSNC  217 (414)
Q Consensus       203 l~~~p~Le~L~l~~~  217 (414)
                      ..+||+|+.|++.+|
T Consensus       207 ~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHCTTCCEEECCTT
T ss_pred             HHhCCCCcEEecCCC
Confidence            777888888888776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.56  E-value=1.5e-15  Score=151.88  Aligned_cols=226  Identities=15%  Similarity=0.104  Sum_probs=138.7

Q ss_pred             cccceEEEEEEeccc------CCChhHHHHHHHHHHh--cCceeeEEEeeeCCCccccCCccccc-ccc-ccEEEEeccc
Q 015025          102 FCIQKFRLFLTFLDV------KGSAPIVDRWIRLAVE--NGVRELDFENITDENTVYTLPQAIFS-ANS-VTNLRLVWCR  171 (414)
Q Consensus       102 ~~l~~l~l~~~~~~~------~~~~~~~~~w~~~~~~--~~l~~L~~~l~~~~~~~~~l~~~l~~-~~~-L~~L~l~~~~  171 (414)
                      +.++++.+.......      .........|+.....  +++++|+  +..+...... +..+.. +++ |++|++++|.
T Consensus        73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~--L~~~~i~~~~-~~~l~~~~~~~L~~L~L~~~~  149 (592)
T 3ogk_B           73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH--FRRMIVSDLD-LDRLAKARADDLETLKLDKCS  149 (592)
T ss_dssp             TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEE--EESCBCCHHH-HHHHHHHHGGGCCEEEEESCE
T ss_pred             CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEE--eeccEecHHH-HHHHHHhccccCcEEECcCCC
Confidence            458888886532100      1122245667776653  8999999  6544332222 222333 445 9999999986


Q ss_pred             c-cCCc---cccCCCCcceEEceeEEec---hHHHHHHHhcCCcccEEEeeccCCC--c--eee--ccCCCCCcEEEeee
Q 015025          172 L-EQPF---DSIMLCSLKKLTLERVCLD---EQMVQKLASECPLLEDLCFSNCWGL--K--HLC--VSKASKLKIMEIRS  238 (414)
Q Consensus       172 l-~~~~---~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~~p~Le~L~l~~~~~~--~--~~~--~~~~~~L~~L~i~~  238 (414)
                      . ....   ....+++|++|+|+++.++   ...+..+..+++.|++|++.++...  .  .+.  +.++++|+.|++.+
T Consensus       150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~  229 (592)
T 3ogk_B          150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD  229 (592)
T ss_dssp             EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred             CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence            2 2111   2347899999999999883   3347778889999999999877642  1  111  22578999999988


Q ss_pred             cc-ccceeeeecCCCeeEEEEEeeCC--------------------------CCceEEeecCCCCccEEEeeecccchHH
Q 015025          239 FS-EEIEIVEISVPSLQQLTLLFYGA--------------------------RRPRVVEVARSPHLKKLDLVSVYFADNE  291 (414)
Q Consensus       239 ~~-~~l~~~~~~~p~L~~L~l~~~~~--------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (414)
                      |. ..+......+++|++|.++....                          ....+..+..+++|++|+++++.+++..
T Consensus       230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED  309 (592)
T ss_dssp             CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred             ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence            75 22222233456666666641100                          1112222345778888888887777777


Q ss_pred             HHHHhhcCCCCcEEEecCccc---cccccccccccceEEecc
Q 015025          292 FNHLISKFPSLEDLFVTRCCL---PGKIKISSNQLKNLLFRS  330 (414)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~c~~---~~~~~~~~~~L~~L~l~~  330 (414)
                      +..++..+++|++|++..+..   ...+...+++|+.|++.+
T Consensus       310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence            666777888888888874411   122233467788887774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=2.5e-15  Score=139.44  Aligned_cols=175  Identities=17%  Similarity=0.282  Sum_probs=122.9

Q ss_pred             ccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEe
Q 015025          160 NSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEI  236 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i  236 (414)
                      ++++.|+++++.+.... ....+++|++|+++++.+++..+..++..|++|++|++.+|.....  -.+..+++|+.|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            67888888887765443 4456788999999888887777888888889999999988864222  12345788999988


Q ss_pred             eecc--c--cceeeeecCCCeeEEEEEee-CCCCc-eEEeecCCC-CccEEEeeec--ccchHHHHHHhhcCCCCcEEEe
Q 015025          237 RSFS--E--EIEIVEISVPSLQQLTLLFY-GARRP-RVVEVARSP-HLKKLDLVSV--YFADNEFNHLISKFPSLEDLFV  307 (414)
Q Consensus       237 ~~~~--~--~l~~~~~~~p~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l  307 (414)
                      ++|.  .  .+..+...+|+|++|+++++ ...+. ....+..++ +|+.|+++++  .+++..+...+..+++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            8884  1  12333346788888888865 33211 233356788 9999999888  5666667777788899999999


Q ss_pred             cCcccccc----ccccccccceEEeccCCCc
Q 015025          308 TRCCLPGK----IKISSNQLKNLLFRSCKYL  334 (414)
Q Consensus       308 ~~c~~~~~----~~~~~~~L~~L~l~~c~~L  334 (414)
                      ++|..+..    ....+++|+.|++++|..+
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  260 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  260 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence            98864322    1234578888888888643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.54  E-value=2.5e-14  Score=133.31  Aligned_cols=253  Identities=13%  Similarity=0.055  Sum_probs=158.7

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+..  ..++. +..+++|++|++++|.+...+....+++|++|+++++.++.-  . .+.++++|++|
T Consensus        44 ~~L~~L~--l~~~~i--~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L  115 (347)
T 4fmz_A           44 ESITKLV--VAGEKV--ASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLREL  115 (347)
T ss_dssp             TTCSEEE--CCSSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEE
T ss_pred             ccccEEE--EeCCcc--ccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEE
Confidence            6889998  654332  34443 667999999999999887655578899999999999988432  2 26789999999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  290 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  290 (414)
                      ++.+|.......+..+++|+.|++++|. ....+  ...+++|++|.++.+.......  +..+++|+.|+++++.+...
T Consensus       116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          116 YLNEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred             ECcCCcccCchhhccCCceeEEECCCCC-CcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence            9999875433336678999999999985 11111  2356778888877443322111  45666777777766655432


Q ss_pred             HHH-------------------HHhhcCCCCcEEEecCccccccc-cccccccceEEeccCCCceeee--ccCCccceEE
Q 015025          291 EFN-------------------HLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID--VDAPNLLLFT  348 (414)
Q Consensus       291 ~~~-------------------~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~~L~~l~--i~~~~L~~l~  348 (414)
                      ...                   ..+..+++|++|++++|...... ...+++|+.|++++|. +..+.  ...++|+.++
T Consensus       193 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~  271 (347)
T 4fmz_A          193 SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLN  271 (347)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEE
T ss_pred             ccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEE
Confidence            110                   00344455555555554221111 2234566666666552 22222  2356777777


Q ss_pred             eeecccc--eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          349 YEFNPIP--IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       349 ~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      +.++.+.  .....+++|+.+++..+.- .    ......+.++++|++|+++.++
T Consensus       272 l~~n~l~~~~~~~~l~~L~~L~L~~n~l-~----~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          272 VGSNQISDISVLNNLSQLNSLFLNNNQL-G----NEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCC-C----GGGHHHHHTCTTCSEEECCSSS
T ss_pred             ccCCccCCChhhcCCCCCCEEECcCCcC-C----CcChhHhhccccCCEEEccCCc
Confidence            7777643  2234577888888875432 1    1224556788899988887654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.53  E-value=2.1e-14  Score=132.66  Aligned_cols=205  Identities=20%  Similarity=0.239  Sum_probs=151.5

Q ss_pred             cccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEE
Q 015025          159 ANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIME  235 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~  235 (414)
                      ..+++.|+++++.+...+ ....+++|++|+|+++.+.  .+...+.++++|++|++.+|... .+  .+.++++|+.|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            368999999999877544 4667999999999999885  33444678999999999998643 32  245689999999


Q ss_pred             eeeccccceeee------------ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCc
Q 015025          236 IRSFSEEIEIVE------------ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  303 (414)
Q Consensus       236 i~~~~~~l~~~~------------~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  303 (414)
                      +++|. ....+.            ..+++|++|+++.+... .++..+..+++|+.|+++++.++.-  ...+..+++|+
T Consensus       157 L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l--~~~l~~l~~L~  232 (328)
T 4fcg_A          157 IRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLE  232 (328)
T ss_dssp             EEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC--CGGGGGCTTCC
T ss_pred             CCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC--chhhccCCCCC
Confidence            99986 222111            14899999999976553 4555678899999999999988742  22467889999


Q ss_pred             EEEecCcccccccc---ccccccceEEeccCCCceeeec---cCCccceEEeeecc----cceEeeecCCccEEEEE
Q 015025          304 DLFVTRCCLPGKIK---ISSNQLKNLLFRSCKYLKVIDV---DAPNLLLFTYEFNP----IPIISINVPCPWKVSFV  370 (414)
Q Consensus       304 ~L~l~~c~~~~~~~---~~~~~L~~L~l~~c~~L~~l~i---~~~~L~~l~~~~~~----~~~~~~~~~~L~~l~i~  370 (414)
                      +|++++|.....+.   ..+++|+.|++++|..+..++.   ..++|+.+++.++.    +|....++++|+.+.+.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            99999986655543   3467899999999987766652   36677777777765    34445567777777653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.53  E-value=4.9e-15  Score=152.60  Aligned_cols=218  Identities=16%  Similarity=0.026  Sum_probs=115.3

Q ss_pred             ccCCccccccccccEEEEecccccC--Cc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee-
Q 015025          150 YTLPQAIFSANSVTNLRLVWCRLEQ--PF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-  224 (414)
Q Consensus       150 ~~l~~~l~~~~~L~~L~l~~~~l~~--~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~-  224 (414)
                      ..+|..+..+++|++|++++|.+..  +.  ....+++|++|+++++.+.......+..++++|++|++.+|...+... 
T Consensus        90 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  169 (768)
T 3rgz_A           90 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV  169 (768)
T ss_dssp             EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred             CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence            3455566666777777777766542  11  345667777777776666322222222456677777776665422211 


Q ss_pred             ----ccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025          225 ----VSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF  299 (414)
Q Consensus       225 ----~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  299 (414)
                          +.++++|+.|++++|. ..... ...+++|++|+++.+......+. ++.+++|+.|+++++.+++.. ...+..+
T Consensus       170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l  246 (768)
T 3rgz_A          170 GWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTC  246 (768)
T ss_dssp             HHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTC
T ss_pred             hhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHhcC
Confidence                3356677777776664 11111 13566677777764444333333 566677777777766665433 2345566


Q ss_pred             CCCcEEEecCcccccccc-ccccccceEEeccCCCceeeec---c-CCccceEEeeeccc----ceEeeecCCccEEEEE
Q 015025          300 PSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKVIDV---D-APNLLLFTYEFNPI----PIISINVPCPWKVSFV  370 (414)
Q Consensus       300 ~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~~L~~l~i---~-~~~L~~l~~~~~~~----~~~~~~~~~L~~l~i~  370 (414)
                      ++|++|++++|.....+. ..+++|+.|++++|.--..++.   . +++|+.+++.++.+    |....++++|+++++.
T Consensus       247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  326 (768)
T 3rgz_A          247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS  326 (768)
T ss_dssp             SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred             CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence            777777777663322211 1355666666665532212211   1 25566666655542    2223345566666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.52  E-value=7.8e-14  Score=135.31  Aligned_cols=234  Identities=15%  Similarity=0.055  Sum_probs=111.4

Q ss_pred             ccccccccEEEEecccccCCccccCCCCcceEEceeEEechH-HHH-----------------HHHhcCCcccEEEeecc
Q 015025          156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQ-MVQ-----------------KLASECPLLEDLCFSNC  217 (414)
Q Consensus       156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~-~l~-----------------~ll~~~p~Le~L~l~~~  217 (414)
                      +..+++|++|++++|.+...+....+++|++|+++++.+..- .+.                 .-+.+++.|+.|++.+|
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN  187 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS
T ss_pred             hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC
Confidence            444555555555555544333344555555555555554211 000                 00344555666666555


Q ss_pred             CCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEe----------------------ecCC
Q 015025          218 WGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVE----------------------VARS  274 (414)
Q Consensus       218 ~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~----------------------~~~~  274 (414)
                      .....-.+..+++|+.|++++|. ..... ...+++|++|+++.+.... . ..                      +..+
T Consensus       188 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l  264 (466)
T 1o6v_A          188 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGL  264 (466)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             cCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcC
Confidence            43221123345566666666554 11111 1134455555555322211 0 11                      3344


Q ss_pred             CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-cccccccceEEeccCCCceeee-ccCCccceEEeeec
Q 015025          275 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID-VDAPNLLLFTYEFN  352 (414)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~~L~~l~-i~~~~L~~l~~~~~  352 (414)
                      ++|+.|+++++.++....   +..+++|+.|++++|...... ...+++|+.|++++|.--.... -..++|+.+++.++
T Consensus       265 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN  341 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred             CCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence            555555555544433211   344555555555555221111 1235566666666653211111 13566777777776


Q ss_pred             ccc--eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          353 PIP--IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       353 ~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      .+.  ....++++|+.+++..+.-.+.   .  +  +.++++|++|.++.++
T Consensus       342 ~l~~~~~l~~l~~L~~L~l~~n~l~~~---~--~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          342 KVSDVSSLANLTNINWLSAGHNQISDL---T--P--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCBC---G--G--GTTCTTCCEEECCCEE
T ss_pred             ccCCchhhccCCCCCEEeCCCCccCcc---c--h--hhcCCCCCEEeccCCc
Confidence            643  2334577888888874432111   1  1  7788889988887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.48  E-value=3.5e-15  Score=149.74  Aligned_cols=80  Identities=20%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc------cccccccccceEEeccCCCceeee----ccC
Q 015025          272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG------KIKISSNQLKNLLFRSCKYLKVID----VDA  341 (414)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~~~~~~~~L~~L~l~~c~~L~~l~----i~~  341 (414)
                      ..+++|+.|+++++.+.... ...+..+++|++|++++|....      .....+++|+.|++++|. +..+.    ...
T Consensus       422 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l  499 (606)
T 3t6q_A          422 QNLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSL  499 (606)
T ss_dssp             TTCTTCCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred             hCcccCCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccc
Confidence            34555555555555443221 1223445555555555553222      112234555556655552 22221    124


Q ss_pred             CccceEEeeecc
Q 015025          342 PNLLLFTYEFNP  353 (414)
Q Consensus       342 ~~L~~l~~~~~~  353 (414)
                      ++|+.+++.++.
T Consensus       500 ~~L~~L~Ls~N~  511 (606)
T 3t6q_A          500 KMMNHVDLSHNR  511 (606)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEECCCCc
Confidence            555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.48  E-value=1.6e-14  Score=148.67  Aligned_cols=174  Identities=16%  Similarity=0.020  Sum_probs=113.8

Q ss_pred             cccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025          157 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  235 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  235 (414)
                      ..+++|++|++++|.+.... ....+++|++|+++++.++. .+...+.++++|++|++.+|...+......+++|+.|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            55778888888887765422 46678888888888888753 23445678889999999888754433333578888888


Q ss_pred             eeecc--ccceeee-ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccc
Q 015025          236 IRSFS--EEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL  312 (414)
Q Consensus       236 i~~~~--~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  312 (414)
                      +++|.  ..+.... ..+++|++|+++.+......+..++.+++|+.|+++++.+++......+..+++|++|++++|..
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            88875  1111111 22488899888854433334445677888999998888776443344466788888888888743


Q ss_pred             cccccc---ccc-ccceEEeccC
Q 015025          313 PGKIKI---SSN-QLKNLLFRSC  331 (414)
Q Consensus       313 ~~~~~~---~~~-~L~~L~l~~c  331 (414)
                      ...+..   ..+ +|+.|+++++
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N  378 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSN  378 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSS
T ss_pred             CccccHHHHhhhcCCcEEEccCC
Confidence            322221   122 6666666655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.47  E-value=1.6e-13  Score=133.10  Aligned_cols=247  Identities=11%  Similarity=0.072  Sum_probs=123.5

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+.  ...++. +..+++|++|++++|.+...+....+++|++|+++++.++...  . +.++++|++|
T Consensus        68 ~~L~~L~--Ls~n~--l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L  139 (466)
T 1o6v_A           68 NNLTQIN--FSNNQ--LTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRL  139 (466)
T ss_dssp             TTCCEEE--CCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEE
T ss_pred             cCCCEEE--CCCCc--cCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEE
Confidence            5777777  54332  223343 5667788888888877665444667788888888887763221  1 5678888888


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEE----------------------eeCCCCceEEe
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLL----------------------FYGARRPRVVE  270 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~----------------------~~~~~~~~~~~  270 (414)
                      ++.+|.....-.+..+++|+.|.+..+...... ...+++|++|+++                      .+......+  
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--  216 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--  216 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--
Confidence            887775322112333444444444322111110 1133444444444                      222111111  


Q ss_pred             ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-cccccccceEEeccCCCceeee--ccCCccceE
Q 015025          271 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCKYLKVID--VDAPNLLLF  347 (414)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~~L~~l~--i~~~~L~~l  347 (414)
                      ++.+++|+.|+++++.+++.   ..+..+++|+.|++++|...... ...+++|+.|+++++. +..+.  ...++|+.+
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L  292 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTNL  292 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred             ccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCccccccCCCccCeE
Confidence            23344444444444444331   12334455555555554221111 1224455555555542 11111  235566777


Q ss_pred             Eeeecccc--eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          348 TYEFNPIP--IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       348 ~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                      ++.++.+.  .....+++|+.+++..+.-.+.   .   . +..+++|++|+++.+
T Consensus       293 ~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~---~---~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          293 ELNENQLEDISPISNLKNLTYLTLYFNNISDI---S---P-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC---G---G-GGGCTTCCEEECCSS
T ss_pred             EcCCCcccCchhhcCCCCCCEEECcCCcCCCc---h---h-hccCccCCEeECCCC
Confidence            76666532  1234567777777764432111   1   1 567788887777644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.47  E-value=2.1e-14  Score=139.82  Aligned_cols=215  Identities=13%  Similarity=0.032  Sum_probs=91.5

Q ss_pred             CccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCC
Q 015025          153 PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKA  228 (414)
Q Consensus       153 ~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~  228 (414)
                      |..+..+++|++|++++|.+...+  .+..+++|++|+|+++.+... ....+.++++|++|.+.++.....  -.+.++
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  151 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL  151 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred             hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCccceeChhhccCC
Confidence            334444555556665555544332  234455555555555544211 111234455555555555432111  112234


Q ss_pred             CCCcEEEeeecc-cc---------------------ceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEe
Q 015025          229 SKLKIMEIRSFS-EE---------------------IEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  282 (414)
Q Consensus       229 ~~L~~L~i~~~~-~~---------------------l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (414)
                      ++|+.|++.+|. ..                     +..+    ...+++|++|+++.+......+.......+|+.|++
T Consensus       152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  231 (477)
T 2id5_A          152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI  231 (477)
T ss_dssp             TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred             CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence            455555555443 01                     1111    113344444444432222211111122235555555


Q ss_pred             eecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc
Q 015025          283 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP  355 (414)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~  355 (414)
                      +++.++... ...+..+++|+.|++++|.....   ....+++|+.|+++++. +..+.    -..++|+.+++.++.+.
T Consensus       232 ~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          232 THCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             ESSCCCSCC-HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             cCCcccccC-HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCc
Confidence            555444321 12345556666666665532211   11234556666665542 22221    12455666666555422


Q ss_pred             ----eEeeecCCccEEEEE
Q 015025          356 ----IISINVPCPWKVSFV  370 (414)
Q Consensus       356 ----~~~~~~~~L~~l~i~  370 (414)
                          ....++++|+.+++.
T Consensus       310 ~~~~~~~~~l~~L~~L~l~  328 (477)
T 2id5_A          310 TLEESVFHSVGNLETLILD  328 (477)
T ss_dssp             CCCGGGBSCGGGCCEEECC
T ss_pred             eeCHhHcCCCcccCEEEcc
Confidence                122345566666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.46  E-value=5e-14  Score=136.02  Aligned_cols=158  Identities=16%  Similarity=0.077  Sum_probs=99.2

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+...  .++  +..+++|++|++++|.+...+ ...+++|++|+++++.++.-  .  +.+++.|++|
T Consensus        85 ~~L~~L~--Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L  153 (457)
T 3bz5_A           85 TNLTYLA--CDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI--D--VSHNTQLTEL  153 (457)
T ss_dssp             TTCSEEE--CCSSCCS--CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCC--C--CTTCTTCCEE
T ss_pred             CCCCEEE--CcCCCCc--eee--cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCcccee--c--cccCCcCCEE
Confidence            5677777  5443322  233  456777888888877766543 56777888888877777432  1  5567788888


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeee-ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  291 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (414)
                      ++.+|...+.+.+..+++|+.|+++++.  +..+. ..+++|+.|.++.+.... .  .++.+++|+.|+++++.+++-.
T Consensus       154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~--l~~l~l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~ip  228 (457)
T 3bz5_A          154 DCHLNKKITKLDVTPQTQLTTLDCSFNK--ITELDVSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTEID  228 (457)
T ss_dssp             ECTTCSCCCCCCCTTCTTCCEEECCSSC--CCCCCCTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSCCC
T ss_pred             ECCCCCcccccccccCCcCCEEECCCCc--cceeccccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccccC
Confidence            8877766665556667778888777764  22222 256677777776443322 1  3556777777777777665521


Q ss_pred             HHHHhhcCCCCcEEEecCc
Q 015025          292 FNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~c  310 (414)
                          +..+++|+.|++++|
T Consensus       229 ----~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          229 ----VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             ----CTTCTTCSEEECCSS
T ss_pred             ----ccccCCCCEEEeeCC
Confidence                455667777777666

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.45  E-value=5.3e-14  Score=136.94  Aligned_cols=257  Identities=15%  Similarity=0.055  Sum_probs=153.6

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  210 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  210 (414)
                      ++++.|+  +..+... ...+..+..+++|++|++++|.+....  .+..+++|++|+|+++.++.- ....+.++++|+
T Consensus        32 ~~l~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  107 (477)
T 2id5_A           32 TETRLLD--LGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLT  107 (477)
T ss_dssp             TTCSEEE--CCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCC
T ss_pred             CCCcEEE--CCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCC
Confidence            4677777  5432221 122344556778888888877655421  456777888888877766311 112245677888


Q ss_pred             EEEeeccCCCce--eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeee
Q 015025          211 DLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  284 (414)
Q Consensus       211 ~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (414)
                      +|++.+|.....  ..+..+++|+.|+++++.  +..+    ...+++|++|+++.+.........+..+++|+.|++.+
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence            888877754222  123456788888887764  2222    12567788888875443322222355677888888877


Q ss_pred             cccchHHHHHHhhcCCCCcEEEecCcccccccccc---ccccceEEeccCCCceeee----ccCCccceEEeeecccc--
Q 015025          285 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS---SNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP--  355 (414)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~---~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~--  355 (414)
                      +.+.... ...+..+++|+.|++.+|.....+...   ..+|+.|+++++. ++.+.    -..++|+.+++.++.+.  
T Consensus       186 n~i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  263 (477)
T 2id5_A          186 LNINAIR-DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTI  263 (477)
T ss_dssp             CCCCEEC-TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred             CcCcEeC-hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCcc
Confidence            7665422 123456778888888877555444322   3378888887763 33333    23677888888877643  


Q ss_pred             --eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          356 --IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       356 --~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                        ....++++|+++++..+.- ..    .....+.++++|++|+++.+.
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l-~~----~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          264 EGSMLHELLRLQEIQLVGGQL-AV----VEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             CTTSCTTCTTCCEEECCSSCC-SE----ECTTTBTTCTTCCEEECCSSC
T ss_pred             ChhhccccccCCEEECCCCcc-ce----ECHHHhcCcccCCEEECCCCc
Confidence              2344678888888864321 11    112356788899999887543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.45  E-value=1.5e-14  Score=140.01  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=57.5

Q ss_pred             CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceE
Q 015025          275 PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLF  347 (414)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l  347 (414)
                      ++|+.|+++++.++... ...+..+++|++|++++|.....   ....+++|+.|+++++. +..+.    ...++|+.+
T Consensus       275 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccc-hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEE
Confidence            34555555555443321 12244556666666666532221   11234566666666552 22221    124566666


Q ss_pred             Eeeecccc----eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          348 TYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       348 ~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                      ++.++.+.    .....+++|+++++..+.- +.    .....++++++|++|+++.+
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~----~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQL-KS----VPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SC----CCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCcccccChhhccccccccEEECCCCcc-cc----CCHhHhccCCcccEEEccCC
Confidence            66665532    2233466666666653321 10    00123456667776666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.44  E-value=2.7e-14  Score=143.27  Aligned_cols=210  Identities=13%  Similarity=0.098  Sum_probs=124.1

Q ss_pred             ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025          156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  235 (414)
Q Consensus       156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  235 (414)
                      +..+++|+.|+++++.+...+....+++|++|+++++.++  .+..+  .++.|++|.+.+|..........+++|+.|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            4557888888888887765545667788888888888772  22332  7888888888888666665666678888888


Q ss_pred             eeecc-ccce---eeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          236 IRSFS-EEIE---IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       236 i~~~~-~~l~---~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      ++++. ....   .....+++|++|+++.+.. ...+..+..+++|+.|+++++.+........+..+++|+.|++++|.
T Consensus       357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  435 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN  435 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred             CcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence            88775 1111   1112567788888774432 12223455677777777777665543222334566677777777664


Q ss_pred             ccccc---cccccccceEEeccCCCcee-ee---ccCCccceEEeeecccc----eEeeecCCccEEEEE
Q 015025          312 LPGKI---KISSNQLKNLLFRSCKYLKV-ID---VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFV  370 (414)
Q Consensus       312 ~~~~~---~~~~~~L~~L~l~~c~~L~~-l~---i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~  370 (414)
                      .....   ...+++|+.|++++|.--.. ++   -..++|+.+++.++.+.    ....++++|+++++.
T Consensus       436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence            32221   22345666666665532211 11   12455555555555422    122345555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.43  E-value=1.3e-13  Score=130.51  Aligned_cols=247  Identities=16%  Similarity=0.122  Sum_probs=125.6

Q ss_pred             cCceeeEEEeeeCCCccccCC-ccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      +++++|+  +..+..  ..++ ..+..+++|++|++++|.+...+  ....+++|++|+++++.++. ....++.++++|
T Consensus        69 ~~L~~L~--L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L  143 (390)
T 3o6n_A           69 RQVELLN--LNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL  143 (390)
T ss_dssp             CCCSEEE--CTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             ccCcEEE--CCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCC
Confidence            4566666  432221  2222 23444566666666666554332  23456666666666665531 111223456666


Q ss_pred             cEEEeeccCCCce--eeccCCCCCcEEEeeeccccceeee-ecC-------------------CCeeEEEEEeeCCCCce
Q 015025          210 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIVE-ISV-------------------PSLQQLTLLFYGARRPR  267 (414)
Q Consensus       210 e~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~~l~~~~-~~~-------------------p~L~~L~l~~~~~~~~~  267 (414)
                      ++|++.+|.....  -.+..+++|+.|+++++.  +..+. ..+                   ++|++|+++.+.. ...
T Consensus       144 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l-~~~  220 (390)
T 3o6n_A          144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI-NVV  220 (390)
T ss_dssp             CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC-CEE
T ss_pred             cEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeecccccccccCCCCcceEEECCCCee-eec
Confidence            6666665543211  112344556666555553  11111 122                   3455555552221 111


Q ss_pred             EEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeeec---cC
Q 015025          268 VVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVIDV---DA  341 (414)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~i---~~  341 (414)
                        .....++|+.|+++++.+++.   ..+..+++|++|++++|.....   ....+++|+.|+++++. +..+..   ..
T Consensus       221 --~~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l  294 (390)
T 3o6n_A          221 --RGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI  294 (390)
T ss_dssp             --ECCCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCC
T ss_pred             --cccccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCC
Confidence              122346777777777776653   3456677888888877743322   22335677777777653 333332   35


Q ss_pred             CccceEEeeecccc---eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          342 PNLLLFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       342 ~~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                      ++|+.+++.++.+.   .....+++|+.+++..+.- ..  +   .  +..+++|++|+++.+
T Consensus       295 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i-~~--~---~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          295 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VT--L---K--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC-CC--C---C--CCTTCCCSEEECCSS
T ss_pred             CCCCEEECCCCcceecCccccccCcCCEEECCCCcc-ce--e---C--chhhccCCEEEcCCC
Confidence            66777777766532   2234566777777764321 11  1   1  556677777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.43  E-value=5e-14  Score=136.45  Aligned_cols=151  Identities=17%  Similarity=0.081  Sum_probs=83.8

Q ss_pred             cCCCeeEEEEEeeCCCCce-----EEeecCCCCccEEEeeecccchHH---HHHHhhcCCCCcEEEecCcccccc----c
Q 015025          249 SVPSLQQLTLLFYGARRPR-----VVEVARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK----I  316 (414)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~----~  316 (414)
                      .+++|++|+++.+...+..     ......+++|+.|+++++.+++..   +...+..+++|++|++++|.....    +
T Consensus       225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            4566676666633221100     001123667777777777666543   344455677777777777632211    1


Q ss_pred             ----cccccccceEEeccCCCcee-----ee---ccCCccceEEeeecccc----eEee-----ecCCccEEEEEEeeec
Q 015025          317 ----KISSNQLKNLLFRSCKYLKV-----ID---VDAPNLLLFTYEFNPIP----IISI-----NVPCPWKVSFVCKGVL  375 (414)
Q Consensus       317 ----~~~~~~L~~L~l~~c~~L~~-----l~---i~~~~L~~l~~~~~~~~----~~~~-----~~~~L~~l~i~~~~~~  375 (414)
                          ....++|+.|++++|. +..     +.   ...++|+.++++++.+.    ....     ..++|+++++..+. .
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i  382 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-V  382 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-C
T ss_pred             HHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-C
Confidence                1122577777777774 211     11   12477888888777632    1111     15688888887542 2


Q ss_pred             chhHHHhHHHHhccCcceeEEEEEEE
Q 015025          376 NTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       376 ~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                      ++..+..+...+.++++|++|+++.+
T Consensus       383 ~~~~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          383 SDSSCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             ChhhHHHHHHHHHhCCCccEEECCCC
Confidence            33234466677777888888887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.41  E-value=5.3e-14  Score=139.99  Aligned_cols=240  Identities=12%  Similarity=0.092  Sum_probs=135.4

Q ss_pred             cCCccccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCC
Q 015025          151 TLPQAIFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKAS  229 (414)
Q Consensus       151 ~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~  229 (414)
                      ..|..+..+++|++|++++|.+...+ ....+ +|++|++.++.+.  .+..  ..++.|++|.+.+|..........++
T Consensus       273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (570)
T 2z63_A          273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLP  347 (570)
T ss_dssp             CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred             hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCC
Confidence            34455556777888888877665433 33445 7778877777663  1111  35777777777777654444334567


Q ss_pred             CCcEEEeeecc-ccce---eeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEE
Q 015025          230 KLKIMEIRSFS-EEIE---IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  305 (414)
Q Consensus       230 ~L~~L~i~~~~-~~l~---~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  305 (414)
                      +|+.|+++++. ....   .....+++|++|+++.+... .....+..+++|+.|+++++.+........+..+++|++|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            77777777764 1111   11125677777777743322 2222356777777777777665443222234566777777


Q ss_pred             EecCcccccc---ccccccccceEEeccCCCc-eeee---ccCCccceEEeeecccc----eEeeecCCccEEEEEEeee
Q 015025          306 FVTRCCLPGK---IKISSNQLKNLLFRSCKYL-KVID---VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGV  374 (414)
Q Consensus       306 ~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L-~~l~---i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~  374 (414)
                      ++++|.....   ....+++|+.|++++|.-. ..++   -..++|+.+++.++.+.    ....++++|+++++..+.-
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            7777643222   2233567777777766422 1121   23566777777666532    2233566777777764321


Q ss_pred             cchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          375 LNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       375 ~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                       +.    .....+.++++|++|+++.+
T Consensus       507 -~~----~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          507 -KS----VPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             -SC----CCTTTTTTCTTCCEEECCSS
T ss_pred             -CC----CCHHHhhcccCCcEEEecCC
Confidence             11    01234566677777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.41  E-value=2.2e-14  Score=138.95  Aligned_cols=266  Identities=15%  Similarity=0.139  Sum_probs=166.2

Q ss_pred             HhcCceeeEEEeeeCCCccc---cCCccccccccccEEEEecccccCCc---cccCCC----CcceEEceeEEech---H
Q 015025          131 VENGVRELDFENITDENTVY---TLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLC----SLKKLTLERVCLDE---Q  197 (414)
Q Consensus       131 ~~~~l~~L~~~l~~~~~~~~---~l~~~l~~~~~L~~L~l~~~~l~~~~---~~~~l~----~L~~L~L~~~~~~~---~  197 (414)
                      ..+++++|+  +..+.....   .++..+..+++|++|++++|.+....   ....++    +|++|+++++.+++   .
T Consensus        26 ~~~~L~~L~--L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           26 LLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCccEEE--ccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            347999999  765554332   56777778899999999998875422   223455    79999999999854   4


Q ss_pred             HHHHHHhcCCcccEEEeeccCCCce----ee---ccCCCCCcEEEeeecc-c--c---ceeeeecCCCeeEEEEEeeCCC
Q 015025          198 MVQKLASECPLLEDLCFSNCWGLKH----LC---VSKASKLKIMEIRSFS-E--E---IEIVEISVPSLQQLTLLFYGAR  264 (414)
Q Consensus       198 ~l~~ll~~~p~Le~L~l~~~~~~~~----~~---~~~~~~L~~L~i~~~~-~--~---l~~~~~~~p~L~~L~l~~~~~~  264 (414)
                      .+...+..+++|++|++.+|.....    +.   ....++|+.|++++|. .  .   +......+++|++|+++.+...
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            5666778999999999999874211    11   1124689999999886 1  1   1111225799999999954332


Q ss_pred             CceEEee-----cCCCCccEEEeeecccchHH---HHHHhhcCCCCcEEEecCcccccc--------ccccccccceEEe
Q 015025          265 RPRVVEV-----ARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCCLPGK--------IKISSNQLKNLLF  328 (414)
Q Consensus       265 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~~--------~~~~~~~L~~L~l  328 (414)
                      +.....+     ...++|+.|+++++.+++..   +...+..+++|++|++++|.....        +....++|+.|++
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            1111111     13569999999999887753   455667899999999999843221        1123678999999


Q ss_pred             ccCCCcee-----ee---ccCCccceEEeeecccc------e---EeeecCCccEEEEEEeeecchhHHHhHHHHhccCc
Q 015025          329 RSCKYLKV-----ID---VDAPNLLLFTYEFNPIP------I---ISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSK  391 (414)
Q Consensus       329 ~~c~~L~~-----l~---i~~~~L~~l~~~~~~~~------~---~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~  391 (414)
                      ++| .+..     +.   -..++|+.+++.++.+.      +   ...+.++|+++++..+. .+......+...+.+++
T Consensus       264 ~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~  341 (461)
T 1z7x_W          264 WEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNR  341 (461)
T ss_dssp             TTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCS
T ss_pred             cCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCC
Confidence            887 3322     11   12566777777665521      0   00112466666665332 11111233444555555


Q ss_pred             ceeEEEEEE
Q 015025          392 QIESLKLSL  400 (414)
Q Consensus       392 ~L~~L~i~~  400 (414)
                      +|++|+++.
T Consensus       342 ~L~~L~Ls~  350 (461)
T 1z7x_W          342 FLLELQISN  350 (461)
T ss_dssp             SCCEEECCS
T ss_pred             CccEEEccC
Confidence            666555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.41  E-value=3e-13  Score=134.74  Aligned_cols=214  Identities=14%  Similarity=0.015  Sum_probs=98.1

Q ss_pred             cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025          159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  238 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~  238 (414)
                      +++|++|++++|.+...+.  .+++|++|+++++.++.  +.   ..+++|+.|.+.+|.. ..+.. .+++|+.|++++
T Consensus        80 l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~---~~l~~L~~L~L~~N~l-~~lp~-~l~~L~~L~Ls~  150 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LP---ALPSGLCKLWIFGNQL-TSLPV-LPPGLQELSVSD  150 (622)
T ss_dssp             CTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CC---CCCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCS
T ss_pred             CCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CC---CCCCCcCEEECCCCCC-CcCCC-CCCCCCEEECcC
Confidence            3455555555555443221  44555555555554421  00   1345555555555432 22221 135666666665


Q ss_pred             ccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccc
Q 015025          239 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI  318 (414)
Q Consensus       239 ~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~  318 (414)
                      |.  +..+....++|+.|.++.+... .++   ..+++|+.|+++++.++.     +....++|+.|.+.+|.. ..+..
T Consensus       151 N~--l~~l~~~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l-~~l~~  218 (622)
T 3g06_A          151 NQ--LASLPALPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRL-TSLPA  218 (622)
T ss_dssp             SC--CSCCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC-SSCCC
T ss_pred             Cc--CCCcCCccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCcc-cccCC
Confidence            53  2222223345555555532221 111   234666666666665543     112234555555555421 12222


Q ss_pred             cccccceEEeccCCCceeeeccCCccceEEeeecccc-eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEE
Q 015025          319 SSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPIP-IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLK  397 (414)
Q Consensus       319 ~~~~L~~L~l~~c~~L~~l~i~~~~L~~l~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~  397 (414)
                      .+++|+.|+++++ +++.++...++|+.++++++.+. +.. .+++|+.|++..+.      +..++..+.++++|+.|+
T Consensus       219 ~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~-~~~~L~~L~Ls~N~------L~~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          219 LPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPM-LPSGLLSLSVYRNQ------LTRLPESLIHLSSETTVN  290 (622)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSC------CCSCCGGGGGSCTTCEEE
T ss_pred             CCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCc-ccccCcEEeCCCCC------CCcCCHHHhhccccCEEE
Confidence            3455666666554 34444333455666666655533 111 44566666665331      112233355666666666


Q ss_pred             EEEE
Q 015025          398 LSLY  401 (414)
Q Consensus       398 i~~~  401 (414)
                      ++.+
T Consensus       291 L~~N  294 (622)
T 3g06_A          291 LEGN  294 (622)
T ss_dssp             CCSC
T ss_pred             ecCC
Confidence            5543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.41  E-value=1.3e-13  Score=138.80  Aligned_cols=123  Identities=11%  Similarity=0.004  Sum_probs=81.9

Q ss_pred             cCceeeEEEeeeCCCccc----------------cCCcccc--ccccccEEEEecccccCC--ccccCCCCcceEEceeE
Q 015025          133 NGVRELDFENITDENTVY----------------TLPQAIF--SANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERV  192 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~----------------~l~~~l~--~~~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~L~~~  192 (414)
                      +++++|+  +..+.....                .+|..+.  .+++|++|++++|.+...  .....+++|++|+++++
T Consensus       206 ~~L~~L~--Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          206 TKLRQFY--MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             TTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cCCCEEE--CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            6889999  654432220                1898888  899999999999975432  25678999999999999


Q ss_pred             E-echHHHHHHHhc------CCcccEEEeeccCCCcee----eccCCCCCcEEEeeecc-c-cceeeeecCCCeeEEEEE
Q 015025          193 C-LDEQMVQKLASE------CPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSFS-E-EIEIVEISVPSLQQLTLL  259 (414)
Q Consensus       193 ~-~~~~~l~~ll~~------~p~Le~L~l~~~~~~~~~----~~~~~~~L~~L~i~~~~-~-~l~~~~~~~p~L~~L~l~  259 (414)
                      . ++...+..-+..      +++|++|++.+|... .+    .+..+++|+.|+++++. . .+. ....+++|++|+++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~  361 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA  361 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence            8 665234433333      488999999888654 32    24467788888888775 1 122 11234555555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.40  E-value=9e-13  Score=127.20  Aligned_cols=203  Identities=15%  Similarity=0.050  Sum_probs=105.6

Q ss_pred             ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025          156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  235 (414)
Q Consensus       156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  235 (414)
                      +..+++|++|++++|.+...+ ...+++|++|+++++.++.-  .  +..+++|++|.+.+|.. ..+.+..+++|+.|+
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N~l-~~l~l~~l~~L~~L~  154 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARNTL-TEIDVSHNTQLTELD  154 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTSCC-SCCCCTTCTTCCEEE
T ss_pred             cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCCcc-ceeccccCCcCCEEE
Confidence            334555555555555544332 44555555555555555321  1  34555566665555542 223444556666666


Q ss_pred             eeeccccceeee-ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc
Q 015025          236 IRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG  314 (414)
Q Consensus       236 i~~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  314 (414)
                      ++.|. ....+. ..+++|++|+++.+.... ++  +..+++|+.|+++++.++..    -+..+++|+.|++++|....
T Consensus       155 l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          155 CHLNK-KITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CTTCS-CCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC
T ss_pred             CCCCC-cccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc
Confidence            66553 122222 245666777666433321 22  55667777777777666543    14566777777777763322


Q ss_pred             cccccccccceEEeccC----------CCceeeeccCCccceEEeeecccc--eEeeecCCccEEEEEEe
Q 015025          315 KIKISSNQLKNLLFRSC----------KYLKVIDVDAPNLLLFTYEFNPIP--IISINVPCPWKVSFVCK  372 (414)
Q Consensus       315 ~~~~~~~~L~~L~l~~c----------~~L~~l~i~~~~L~~l~~~~~~~~--~~~~~~~~L~~l~i~~~  372 (414)
                      --...+++|+.|+++++          ++|+.+.+...+|+.+++.++...  +....+++|+.+++..+
T Consensus       227 ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN  296 (457)
T ss_dssp             CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred             cCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCC
Confidence            11223567777776654          223333333334445555444321  23345678888888644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=129.01  Aligned_cols=149  Identities=11%  Similarity=0.096  Sum_probs=97.7

Q ss_pred             ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH-HHHHHhhcCCCCcEEEecCcccccccc----ccccc
Q 015025          248 ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN-EFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQ  322 (414)
Q Consensus       248 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~  322 (414)
                      ..+++|++|+++.+......+..+..+++|+.|+++++.++.- .+...+..+++|++|++++|.....+.    ...++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            3677888888885544433344457788999999998888752 334557788999999999885544232    33578


Q ss_pred             cceEEeccCCCceeeeccC-CccceEEeeeccc---ceEeeecCCccEEEEEEeeecchhHHHhHHH-HhccCcceeEEE
Q 015025          323 LKNLLFRSCKYLKVIDVDA-PNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLNTHWYLKLKK-FLGVSKQIESLK  397 (414)
Q Consensus       323 L~~L~l~~c~~L~~l~i~~-~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~-~l~~~~~L~~L~  397 (414)
                      |+.|++++|.--...+... ++|+.+++.++.+   |.....+++|+.+++..+.-      ..++. .+.++++|++|+
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l------~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL------KSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC------CccCHHHhccCCcccEEE
Confidence            8888888875322222222 5788888887763   33334788888888874421      11221 467788888888


Q ss_pred             EEEEE
Q 015025          398 LSLYS  402 (414)
Q Consensus       398 i~~~~  402 (414)
                      ++.++
T Consensus       475 l~~N~  479 (520)
T 2z7x_B          475 LHTNP  479 (520)
T ss_dssp             CCSSC
T ss_pred             CcCCC
Confidence            76543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.40  E-value=1.6e-13  Score=137.72  Aligned_cols=240  Identities=18%  Similarity=0.177  Sum_probs=162.9

Q ss_pred             cCCcc-ccccccccEEEEecccccCCc-cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee---ec
Q 015025          151 TLPQA-IFSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CV  225 (414)
Q Consensus       151 ~l~~~-l~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---~~  225 (414)
                      .++.. +..+++|++|++++|.+...+ ....+++|++|+++++.+.... ...+.++++|++|.+.+|.....+   .+
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhh
Confidence            34433 556899999999999876544 5678899999999999884321 233567999999999998654332   24


Q ss_pred             cCCCCCcEEEeeeccccceee------eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025          226 SKASKLKIMEIRSFSEEIEIV------EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF  299 (414)
Q Consensus       226 ~~~~~L~~L~i~~~~~~l~~~------~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  299 (414)
                      ..+++|+.|+++++.  +..+      ...+++|++|+++.+......+..+..+++|+.|+++++.+........+..+
T Consensus       347 ~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  424 (606)
T 3t6q_A          347 ENLENLRELDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL  424 (606)
T ss_dssp             TTCTTCCEEECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred             hccCcCCEEECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence            468999999999886  2222      23678999999985443222223456789999999998887654333346778


Q ss_pred             CCCcEEEecCcccccc---ccccccccceEEeccCCCcee-e-----eccCCccceEEeeecccc----eEeeecCCccE
Q 015025          300 PSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKV-I-----DVDAPNLLLFTYEFNPIP----IISINVPCPWK  366 (414)
Q Consensus       300 ~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~-l-----~i~~~~L~~l~~~~~~~~----~~~~~~~~L~~  366 (414)
                      ++|+.|++++|.....   ....+++|+.|+++++.--.. +     .-..++|+.+++.++.+.    ....++++|++
T Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            9999999999854332   234478999999998853221 1     124688999999888743    33456889999


Q ss_pred             EEEEEeeecchhHHHhHHHHhccCcceeEEEEE
Q 015025          367 VSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLS  399 (414)
Q Consensus       367 l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~  399 (414)
                      +++..+.- +.    .....+.++++| +|+++
T Consensus       505 L~Ls~N~l-~~----~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          505 VDLSHNRL-TS----SSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             EECCSSCC-CG----GGGGGGTTCCSC-EEECC
T ss_pred             EECCCCcc-Cc----CChhHhCccccc-EEECc
Confidence            99974421 11    112344555555 55544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.40  E-value=1.1e-13  Score=133.86  Aligned_cols=261  Identities=13%  Similarity=0.057  Sum_probs=139.8

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCC--ccccCCCCcceEEceeEEechHHHH-HHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQ-KLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~~p~L  209 (414)
                      +++++|+  +..+.....-.+..+..+++|++|++++|.+...  ..+..+++|++|+++++.++...+. ..+..+++|
T Consensus        54 ~~L~~L~--L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           54 QDLQFLK--VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL  131 (455)
T ss_dssp             TTCCEEE--CCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred             ccccEEE--CcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence            4666666  4433222122233445577777777777765432  1456677777777777776432222 224567777


Q ss_pred             cEEEeeccCCCceee---ccCCCCCcEEEeeecc-ccce--ee-eecCCCeeEEEEEeeCCCCceEE--------eecCC
Q 015025          210 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIE--IV-EISVPSLQQLTLLFYGARRPRVV--------EVARS  274 (414)
Q Consensus       210 e~L~l~~~~~~~~~~---~~~~~~L~~L~i~~~~-~~l~--~~-~~~~p~L~~L~l~~~~~~~~~~~--------~~~~~  274 (414)
                      ++|++.+|.......   +.++++|+.|+++++. ....  .+ ....++|+.|.++.+........        .+..+
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  211 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN  211 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence            777777775432211   3456777777777664 1110  00 01225666666663322111000        01245


Q ss_pred             CCccEEEeeecccchHHHHHHhhc--C------------------------------------CCCcEEEecCcccccc-
Q 015025          275 PHLKKLDLVSVYFADNEFNHLISK--F------------------------------------PSLEDLFVTRCCLPGK-  315 (414)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~--~------------------------------------~~L~~L~l~~c~~~~~-  315 (414)
                      ++|+.|+++++.++......+...  .                                    ++|+.|++++|..... 
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            789999999888776544333221  1                                    3455555555432221 


Q ss_pred             --ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eEeeecCCccEEEEEEeeecchhHHHhHHH
Q 015025          316 --IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLKK  385 (414)
Q Consensus       316 --~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~  385 (414)
                        ....+++|+.|+++++. +..+.    -+.++|+.+++.++.+.    ....++++|+.+++..+.- +.    ....
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~----~~~~  365 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RA----LGDQ  365 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC-CE----ECTT
T ss_pred             hhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc-cc----cChh
Confidence              12234567777776653 22221    13567777777776632    2334577888888764321 11    1123


Q ss_pred             HhccCcceeEEEEEEE
Q 015025          386 FLGVSKQIESLKLSLY  401 (414)
Q Consensus       386 ~l~~~~~L~~L~i~~~  401 (414)
                      .+.++++|++|+++.+
T Consensus       366 ~~~~l~~L~~L~L~~N  381 (455)
T 3v47_A          366 SFLGLPNLKELALDTN  381 (455)
T ss_dssp             TTTTCTTCCEEECCSS
T ss_pred             hccccccccEEECCCC
Confidence            4667788888877654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=6.2e-13  Score=133.01  Aligned_cols=231  Identities=15%  Similarity=0.131  Sum_probs=115.9

Q ss_pred             cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCC
Q 015025          155 AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASK  230 (414)
Q Consensus       155 ~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~  230 (414)
                      .+..+++|++|++++|.+...+  .+..+++|++|+|+++.++. ....++.++++|+.|++.+|......  .+.++++
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  172 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS  172 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc
Confidence            3444556666666665544332  23455666666666555521 11122345556666666555432111  1233455


Q ss_pred             CcEEEeeecc-c------------------cceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025          231 LKIMEIRSFS-E------------------EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  291 (414)
Q Consensus       231 L~~L~i~~~~-~------------------~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (414)
                      |+.|++++|. .                  .+..+. ..++|++|+++.+.. ..+  .....++|+.|+++++.+++. 
T Consensus       173 L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~L~~L~ls~n~l-~~~--~~~~~~~L~~L~L~~n~l~~~-  247 (597)
T 3oja_B          173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNSI-NVV--RGPVNVELTILKLQHNNLTDT-  247 (597)
T ss_dssp             CCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE-CCTTCSEEECCSSCC-CEE--ECSCCSCCCEEECCSSCCCCC-
T ss_pred             CcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc-CCchhheeeccCCcc-ccc--ccccCCCCCEEECCCCCCCCC-
Confidence            5555555443 0                  111111 223455555542221 111  112335677777777766652 


Q ss_pred             HHHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCCCceeeec---cCCccceEEeeeccc---ceEeeecC
Q 015025          292 FNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVIDV---DAPNLLLFTYEFNPI---PIISINVP  362 (414)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~L~~l~i---~~~~L~~l~~~~~~~---~~~~~~~~  362 (414)
                        ..+..+++|+.|++++|......   ...+++|+.|+++++. +..++.   ..|+|+.|++.++.+   |.....++
T Consensus       248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~  324 (597)
T 3oja_B          248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD  324 (597)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHT
T ss_pred             --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCC
Confidence              34566777888888777433221   2235677777777653 333332   256677777776653   22334566


Q ss_pred             CccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          363 CPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       363 ~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      +|+.|++..+.- ..  +     -+..+++|++|+++.++
T Consensus       325 ~L~~L~L~~N~l-~~--~-----~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          325 RLENLYLDHNSI-VT--L-----KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             TCSEEECCSSCC-CC--C-----CCCTTCCCSEEECCSSC
T ss_pred             CCCEEECCCCCC-CC--c-----ChhhcCCCCEEEeeCCC
Confidence            777777764321 11  1     15566677777666443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=2.7e-13  Score=139.71  Aligned_cols=150  Identities=11%  Similarity=0.018  Sum_probs=94.4

Q ss_pred             cCceeeEEEeeeCCCccc----------------cCCcccc--ccccccEEEEecccccCC--ccccCCCCcceEEceeE
Q 015025          133 NGVRELDFENITDENTVY----------------TLPQAIF--SANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERV  192 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~----------------~l~~~l~--~~~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~L~~~  192 (414)
                      ++++.|+  +..+.....                .+|..+.  .+++|++|++++|.+...  .....+++|+.|+++++
T Consensus       448 ~~L~~L~--Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          448 TKLQIIY--FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             TTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCEEE--CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            6888888  654433321                3888877  899999999999875432  25678999999999999


Q ss_pred             E-echHHHHHHH-------hcCCcccEEEeeccCCCcee----eccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEE
Q 015025          193 C-LDEQMVQKLA-------SECPLLEDLCFSNCWGLKHL----CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL  259 (414)
Q Consensus       193 ~-~~~~~l~~ll-------~~~p~Le~L~l~~~~~~~~~----~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~  259 (414)
                      . ++...++.-+       ..+|+|+.|++.+|... .+    .+.++++|+.|+++++. ..++ ....+++|+.|+++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence            7 6542333322       34568999999888654 32    24467788888887775 2122 12255667777776


Q ss_pred             eeCCCCceEEeecCCCC-ccEEEeeeccc
Q 015025          260 FYGARRPRVVEVARSPH-LKKLDLVSVYF  287 (414)
Q Consensus       260 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~  287 (414)
                      .+... .++..+..+++ |+.|+++++.+
T Consensus       604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L  631 (876)
T 4ecn_A          604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKL  631 (876)
T ss_dssp             SSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred             CCccc-cchHHHhhccccCCEEECcCCCC
Confidence            43332 33333444555 66666655544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.38  E-value=1.3e-13  Score=126.71  Aligned_cols=165  Identities=20%  Similarity=0.136  Sum_probs=76.5

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+... ...|..+..+++|++|++++|.+........+++|++|+++++.++.      +..++.|++|
T Consensus        34 ~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L  104 (317)
T 3o53_A           34 WNVKELD--LSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL  104 (317)
T ss_dssp             GGCSEEE--CTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred             CCCCEEE--CcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEE
Confidence            4666666  4432211 12223445566777777777665433335566667777766666531      1234666666


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCCceEEee-cCCCCccEEEeeecccch
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEV-ARSPHLKKLDLVSVYFAD  289 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~  289 (414)
                      .+.+|.. ..+....+++|+.|+++++. ..+.. ....+++|++|+++.+.........+ ..+++|+.|+++++.++.
T Consensus       105 ~l~~n~l-~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          105 HAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             ECCSSCC-SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ECCCCcc-CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            6666542 22222334566666666554 11111 11134555555555322211111111 234555555555554433


Q ss_pred             HHHHHHhhcCCCCcEEEecCc
Q 015025          290 NEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       290 ~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ..   ....+++|++|++++|
T Consensus       184 ~~---~~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          184 VK---GQVVFAKLKTLDLSSN  201 (317)
T ss_dssp             EE---CCCCCTTCCEEECCSS
T ss_pred             cc---cccccccCCEEECCCC
Confidence            21   1112455555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.37  E-value=3e-12  Score=126.76  Aligned_cols=172  Identities=15%  Similarity=0.057  Sum_probs=107.0

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  210 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  210 (414)
                      +++++|+  +..+... ...|..+..+++|++|++++|.+....  .+..+++|++|+++++.++.. ....+.++++|+
T Consensus        26 ~~L~~L~--Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLD--LSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEE--CCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCC
T ss_pred             CCccEEE--CcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCc
Confidence            4677777  5543322 223455667888888888888765433  456788888888888877422 223356788888


Q ss_pred             EEEeeccCCCc-e--eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025          211 DLCFSNCWGLK-H--LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  283 (414)
Q Consensus       211 ~L~l~~~~~~~-~--~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (414)
                      +|++.+|.... .  -.+.++++|+.|+++++. ....+    ...+++|++|+++.+......+..+..+++|+.|+++
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE-TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCc-cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            88888876422 1  124467888888888775 22222    1256788888888554433233345566777777777


Q ss_pred             ecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          284 SVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      .+...... ..+...+++|+.|++++|
T Consensus       181 ~n~~~~~~-~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          181 LSESAFLL-EIFADILSSVRYLELRDT  206 (549)
T ss_dssp             CSBSTTHH-HHHHHSTTTBSEEEEESC
T ss_pred             cCcccccc-hhhHhhcccccEEEccCC
Confidence            66654322 223345677777777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.37  E-value=1e-12  Score=129.20  Aligned_cols=260  Identities=15%  Similarity=0.062  Sum_probs=146.1

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+.. ....|..+..+++|++|++++|.+...+.. .+++|++|+++++.++...+...+.++++|++|
T Consensus        45 ~~L~~L~--Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           45 SKLRILI--ISHNRI-QYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             TTCCEEE--CCSSCC-CEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             ccccEEe--cCCCcc-CCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence            4666666  443222 122244555667777777777766543322 667777777777766432222334567777777


Q ss_pred             EeeccCCCceeeccCCCCC--cEEEeeeccc--------ccee----------------------eeecCCCeeEEEEEe
Q 015025          213 CFSNCWGLKHLCVSKASKL--KIMEIRSFSE--------EIEI----------------------VEISVPSLQQLTLLF  260 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L--~~L~i~~~~~--------~l~~----------------------~~~~~p~L~~L~l~~  260 (414)
                      ++.+|... ...+..+++|  +.|+++++.-        .+..                      ....+++|+.++++.
T Consensus       121 ~L~~n~l~-~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  199 (520)
T 2z7x_B          121 GLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC  199 (520)
T ss_dssp             EEEESSCC-GGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred             EecCcccc-hhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence            77766532 2333445566  7777666531        0000                      011356677777774


Q ss_pred             eC-------CCCceEEeecCCCCccEEEeeecccchHHHHHHhh--cCCCCcEEEecCcccccccc--------ccccc-
Q 015025          261 YG-------ARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLIS--KFPSLEDLFVTRCCLPGKIK--------ISSNQ-  322 (414)
Q Consensus       261 ~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~~~~~~--------~~~~~-  322 (414)
                      +.       .....+ .+..+++|+.|++.++.+.+..+..+..  ..++|++|++++|.....+.        ...++ 
T Consensus       200 n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L  278 (520)
T 2z7x_B          200 VLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL  278 (520)
T ss_dssp             CCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred             cccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence            32       111111 3556788888888887777654444332  24688888888774322221        12223 


Q ss_pred             -------------------------cceEEeccCCCceeee--ccCCccceEEeeeccc----ceEeeecCCccEEEEEE
Q 015025          323 -------------------------LKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPI----PIISINVPCPWKVSFVC  371 (414)
Q Consensus       323 -------------------------L~~L~l~~c~~L~~l~--i~~~~L~~l~~~~~~~----~~~~~~~~~L~~l~i~~  371 (414)
                                               |+.|+++++.- ....  ...++|+.+++.++.+    |.....+++|+++++..
T Consensus       279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  357 (520)
T 2z7x_B          279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM  357 (520)
T ss_dssp             EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCS
T ss_pred             EeccccccceecchhhhhcccccCceeEEEcCCCcc-ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccC
Confidence                                     44444444431 1111  2467788888887763    23345788899998875


Q ss_pred             eeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          372 KGVLNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       372 ~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      +. ...  +..+...+.++++|++|+++.+.
T Consensus       358 N~-l~~--l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          358 NQ-LKE--LSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             SC-CCB--HHHHHHHHTTCTTCCEEECCSSC
T ss_pred             Cc-cCc--cccchHHHhhCCCCCEEECCCCc
Confidence            43 222  34556778888899988887544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.37  E-value=2e-13  Score=132.89  Aligned_cols=202  Identities=17%  Similarity=0.108  Sum_probs=100.8

Q ss_pred             cccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025          161 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  238 (414)
Q Consensus       161 ~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~  238 (414)
                      +|++|++++|.+...+  .+..+++|++|+|+++.++... .  +..++.|+.|++++|. +..+.  ..++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECcC
Confidence            5555555555544322  3445555555555555442100 0  4455556666655553 22222  125566666665


Q ss_pred             ccccceee-eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-
Q 015025          239 FSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-  316 (414)
Q Consensus       239 ~~~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-  316 (414)
                      |.  +..+ ...+++|++|+++.+......+..++.+++|+.|+++++.+++.....+...+++|+.|++++|...... 
T Consensus       109 N~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          109 NN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SC--CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             Cc--CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence            54  1111 1234566666666443333333344556666666666666554333333345666666666666322111 


Q ss_pred             cccccccceEEeccCCCceeee---ccCCccceEEeeeccc---ceEeeecCCccEEEEEE
Q 015025          317 KISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPI---PIISINVPCPWKVSFVC  371 (414)
Q Consensus       317 ~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~  371 (414)
                      ...+++|+.|+++++. +..++   ...++|+.++++++.+   |.....+++|+.+++..
T Consensus       187 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG  246 (487)
T ss_dssp             CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred             cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence            1125566666666552 32222   1245566666666552   22234567888888863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.36  E-value=2.1e-13  Score=124.75  Aligned_cols=219  Identities=17%  Similarity=0.106  Sum_probs=135.8

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechH-HHHHHHhcCCcccEEEeeccCCCce-ee
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQ-MVQKLASECPLLEDLCFSNCWGLKH-LC  224 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~-~l~~ll~~~p~Le~L~l~~~~~~~~-~~  224 (414)
                      -..+|..+.  ++|++|++++|.+...+  .+..+++|++|+++++.++.. .......++++|++|++.+|..... ..
T Consensus        19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~   96 (306)
T 2z66_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN   96 (306)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred             cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence            345555443  57888888888776544  246788888888888766311 1112234578888888888753221 12


Q ss_pred             ccCCCCCcEEEeeecc-ccce--eeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCC
Q 015025          225 VSKASKLKIMEIRSFS-EEIE--IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS  301 (414)
Q Consensus       225 ~~~~~~L~~L~i~~~~-~~l~--~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      +..+++|+.|+++++. ....  .....+++|++|+++.+.........+..+++|+.|+++++.+.+......+..+++
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            4457888888888775 1111  122356788888887443322222234567888888888877665333345667788


Q ss_pred             CcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eEeeec-CCccEEEE
Q 015025          302 LEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINV-PCPWKVSF  369 (414)
Q Consensus       302 L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~-~~L~~l~i  369 (414)
                      |++|++++|.....   .....++|+.|+++++. +..+.    -..++|+.+++.++.+.    .....+ ++|+.+++
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence            88888888743322   22345788888887764 22221    23577888888877632    233455 48999999


Q ss_pred             E
Q 015025          370 V  370 (414)
Q Consensus       370 ~  370 (414)
                      .
T Consensus       256 ~  256 (306)
T 2z66_A          256 T  256 (306)
T ss_dssp             T
T ss_pred             c
Confidence            7

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.36  E-value=5.6e-13  Score=132.04  Aligned_cols=148  Identities=19%  Similarity=0.189  Sum_probs=80.3

Q ss_pred             CCCeeEEEEEeeCCCCce--E-EeecCCCCccEEEeeecccchHHHHH---HhhcCCCCcEEEecCccccc--cc-----
Q 015025          250 VPSLQQLTLLFYGARRPR--V-VEVARSPHLKKLDLVSVYFADNEFNH---LISKFPSLEDLFVTRCCLPG--KI-----  316 (414)
Q Consensus       250 ~p~L~~L~l~~~~~~~~~--~-~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~c~~~~--~~-----  316 (414)
                      +++|++|+++.+......  + .....+++|+.|++.++.+++.....   ....+++|+.|++.+|....  .+     
T Consensus       195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  274 (549)
T 2z81_A          195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES  274 (549)
T ss_dssp             TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTT
T ss_pred             cccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccch
Confidence            677888887744332210  0 01234678888888887776654433   34567788888887773211  00     


Q ss_pred             --cccc-----------------------------cccceEEeccCCCceeee----ccCCccceEEeeecccc------
Q 015025          317 --KISS-----------------------------NQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP------  355 (414)
Q Consensus       317 --~~~~-----------------------------~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~------  355 (414)
                        ....                             ++|+.|+++++. +..++    -..++|+.+++.++.+.      
T Consensus       275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~  353 (549)
T 2z81_A          275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN  353 (549)
T ss_dssp             TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccc
Confidence              0112                             344445544432 23332    13567777777776632      


Q ss_pred             -eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          356 -IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       356 -~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                       .....+++|+.+++..+. .+.  +......+.++++|++|+++.+
T Consensus       354 ~~~~~~l~~L~~L~Ls~N~-l~~--~~~~~~~~~~l~~L~~L~Ls~N  397 (549)
T 2z81_A          354 SACKGAWPSLQTLVLSQNH-LRS--MQKTGEILLTLKNLTSLDISRN  397 (549)
T ss_dssp             HTCTTSSTTCCEEECTTSC-CCC--HHHHHHHGGGCTTCCEEECTTC
T ss_pred             hhhhhccccCcEEEccCCc-ccc--cccchhhhhcCCCCCEEECCCC
Confidence             113456778888776432 111  2222345777778887777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.36  E-value=2.4e-12  Score=121.87  Aligned_cols=229  Identities=17%  Similarity=0.079  Sum_probs=143.9

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  210 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  210 (414)
                      +++++|+  +..+.. ....|..+..+++|++|++++|.+...+  .+..+++|++|+++++.+... ....+.++++|+
T Consensus        93 ~~L~~L~--L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~  168 (390)
T 3o6n_A           93 HTIQKLY--MGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQ  168 (390)
T ss_dssp             TTCCEEE--CCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCC
T ss_pred             CCcCEEE--CCCCCC-CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCC
Confidence            4667777  543221 1222333455677777777777665433  235677777777777766311 112245567777


Q ss_pred             EEEeeccCCCceeeccCCC-------------------CCcEEEeeeccccceeee-ecCCCeeEEEEEeeCCCCceEEe
Q 015025          211 DLCFSNCWGLKHLCVSKAS-------------------KLKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRPRVVE  270 (414)
Q Consensus       211 ~L~l~~~~~~~~~~~~~~~-------------------~L~~L~i~~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~  270 (414)
                      +|++.+|.. ..+.+..++                   +|+.|+++++.  +..+. ...++|++|+++.+.....  ..
T Consensus       169 ~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~L~~L~l~~n~l~~~--~~  243 (390)
T 3o6n_A          169 NLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS--INVVRGPVNVELTILKLQHNNLTDT--AW  243 (390)
T ss_dssp             EEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC--CCEEECCCCSSCCEEECCSSCCCCC--GG
T ss_pred             EEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCCCe--eeeccccccccccEEECCCCCCccc--HH
Confidence            777776642 222233334                   45555555553  22222 2357899999996544332  34


Q ss_pred             ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc--cccccccccceEEeccCCCceeeec---cCCccc
Q 015025          271 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCKYLKVIDV---DAPNLL  345 (414)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c~~L~~l~i---~~~~L~  345 (414)
                      +..+++|+.|+++++.+.... ...+..+++|+.|++++|....  .....+++|+.|+++++ .+..++.   ..++|+
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~  321 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE  321 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred             HcCCCCccEEECCCCcCCCcC-hhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCC
Confidence            678999999999999876532 2346778999999999984322  22235789999999988 3444432   357899


Q ss_pred             eEEeeecccc-eEeeecCCccEEEEEEe
Q 015025          346 LFTYEFNPIP-IISINVPCPWKVSFVCK  372 (414)
Q Consensus       346 ~l~~~~~~~~-~~~~~~~~L~~l~i~~~  372 (414)
                      .+++.++.+. .....+++|+.+++..+
T Consensus       322 ~L~L~~N~i~~~~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          322 NLYLDHNSIVTLKLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             EEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred             EEECCCCccceeCchhhccCCEEEcCCC
Confidence            9999998855 44567889999999843

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.35  E-value=3.3e-13  Score=123.80  Aligned_cols=193  Identities=16%  Similarity=0.070  Sum_probs=94.1

Q ss_pred             CceeeEEEeeeCCCcc-ccCCccccccccccEEEEec-ccccC--CccccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          134 GVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVW-CRLEQ--PFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       134 ~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~l~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      ++++|+  +..+.... ..+|..+..+++|++|++++ +.+..  +.....+++|++|+++++.++. .+...+.++++|
T Consensus        51 ~l~~L~--L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L  127 (313)
T 1ogq_A           51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTC
T ss_pred             eEEEEE--CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCC
Confidence            455666  43322211 14566666667777777764 44332  1145566677777777666531 112224556677


Q ss_pred             cEEEeeccCCCce--eeccCCCCCcEEEeeecc-c-cceeeeecCC-CeeEEEEEeeCCCCceEEeecCCCCccEEEeee
Q 015025          210 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-E-EIEIVEISVP-SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  284 (414)
Q Consensus       210 e~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~-~-~l~~~~~~~p-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (414)
                      ++|++.+|.....  -.+..+++|+.|+++++. . .+......++ +|++|+++.+......+..+..++ |+.|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            7777766643211  123345667777666664 0 1111111333 666666663322111222233343 66666666


Q ss_pred             cccchHHHHHHhhcCCCCcEEEecCccccccc--cccccccceEEeccC
Q 015025          285 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKI--KISSNQLKNLLFRSC  331 (414)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~--~~~~~~L~~L~l~~c  331 (414)
                      +.++... ...+..+++|+.|++++|.....+  ....++|+.|+++++
T Consensus       207 N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          207 NMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             SEEEECC-GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred             CcccCcC-CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence            6554321 223455666666666665322111  122345555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=2.1e-13  Score=140.52  Aligned_cols=261  Identities=11%  Similarity=0.066  Sum_probs=149.6

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEeccc-ccC--Cc--------cccCCCCcceEEceeEEechHHHHH
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR-LEQ--PF--------DSIMLCSLKKLTLERVCLDEQMVQK  201 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~--~~--------~~~~l~~L~~L~L~~~~~~~~~l~~  201 (414)
                      +++++|+  +..+. ....+|..+..+++|++|++++|. +..  .+        ....+++|+.|+++++.++  .++.
T Consensus       491 ~~L~~L~--Ls~N~-l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~  565 (876)
T 4ecn_A          491 KDLTDVE--LYNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPA  565 (876)
T ss_dssp             TTCCEEE--EESCT-TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCC
T ss_pred             CCCCEEE--CcCCC-CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCC
Confidence            6788888  65432 245778888888999999999886 543  11        1234568888888888775  3333


Q ss_pred             --HHhcCCcccEEEeeccCCCcee-eccCCCCCcEEEeeecc-ccceeeeecCCC-eeEEEEE-----------------
Q 015025          202 --LASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEIRSFS-EEIEIVEISVPS-LQQLTLL-----------------  259 (414)
Q Consensus       202 --ll~~~p~Le~L~l~~~~~~~~~-~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~-L~~L~l~-----------------  259 (414)
                        .+.++++|+.|++.+|... .+ .+..+++|+.|++++|. ..+......+++ |++|.++                 
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~  644 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY  644 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred             hhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence              5677888888888877542 22 23345566666665553 111111112333 4444444                 


Q ss_pred             --------eeCCCCceE---Eeec--CCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccc--------
Q 015025          260 --------FYGARRPRV---VEVA--RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI--------  318 (414)
Q Consensus       260 --------~~~~~~~~~---~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~--------  318 (414)
                              .+......+   ..+.  .+++|+.|+++++.++. ....++..+++|+.|+|++|... .+..        
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~  722 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG  722 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence                    322211100   0111  22367777777776652 22334557788888888887332 2221        


Q ss_pred             ---cccccceEEeccCCCceeee---c--cCCccceEEeeeccc---ceEeeecCCccEEEEEEeeecc-hhHHHhHHHH
Q 015025          319 ---SSNQLKNLLFRSCKYLKVID---V--DAPNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLN-THWYLKLKKF  386 (414)
Q Consensus       319 ---~~~~L~~L~l~~c~~L~~l~---i--~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~-~~~~~~l~~~  386 (414)
                         .+++|+.|++++| ++..++   .  ..++|+.|++.++.+   |....++++|+.|++..+...+ ......++..
T Consensus       723 ~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG  801 (876)
T ss_dssp             CCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred             cccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence               1237888888877 343443   1  457788888887763   3344577888888886421000 0001223445


Q ss_pred             hccCcceeEEEEEEEE
Q 015025          387 LGVSKQIESLKLSLYS  402 (414)
Q Consensus       387 l~~~~~L~~L~i~~~~  402 (414)
                      +.++++|++|+++.+.
T Consensus       802 l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          802 ITTCPSLIQLQIGSND  817 (876)
T ss_dssp             GGGCSSCCEEECCSSC
T ss_pred             HhcCCCCCEEECCCCC
Confidence            6677888888776443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.34  E-value=1e-13  Score=139.66  Aligned_cols=261  Identities=11%  Similarity=0.057  Sum_probs=149.5

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEeccc-ccC--Cc-cccC------CCCcceEEceeEEechHHHHH-
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCR-LEQ--PF-DSIM------LCSLKKLTLERVCLDEQMVQK-  201 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~-l~~--~~-~~~~------l~~L~~L~L~~~~~~~~~l~~-  201 (414)
                      +++++|+  +..+. ....+|..+..+++|++|++++|. +..  .+ ....      +++|++|+++++.++  .+.. 
T Consensus       249 ~~L~~L~--L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~  323 (636)
T 4eco_A          249 KDLTDVE--VYNCP-NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVE  323 (636)
T ss_dssp             TTCCEEE--EECCT-TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCH
T ss_pred             CCCCEEE--ecCCc-CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCch
Confidence            6788888  65432 235788888889999999999987 653  11 2333      488999999988885  3433 


Q ss_pred             -HHhcCCcccEEEeeccCCCcee-eccCCCCCcEEEeeec------------------------c-ccceeeee--cCCC
Q 015025          202 -LASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEIRSF------------------------S-EEIEIVEI--SVPS  252 (414)
Q Consensus       202 -ll~~~p~Le~L~l~~~~~~~~~-~~~~~~~L~~L~i~~~------------------------~-~~l~~~~~--~~p~  252 (414)
                       .+.++++|+.|++.+|...+.+ .+..+++|+.|+++++                        . ..+.....  .+++
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV  403 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred             hhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence             5678889999998887643222 2223344555555444                        3 11111000  1224


Q ss_pred             eeEEEEEeeCCCCceEEeec-------CCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccccccc------
Q 015025          253 LQQLTLLFYGARRPRVVEVA-------RSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS------  319 (414)
Q Consensus       253 L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~------  319 (414)
                      |++|+++.+......+..+.       .+++|+.|+++++.++. ....++..+++|+.|++++|... .+...      
T Consensus       404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~  481 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN  481 (636)
T ss_dssp             EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred             cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence            55555553333222222223       45577777777776653 22234556788888888877433 22211      


Q ss_pred             -----ccccceEEeccCCCceeee---c--cCCccceEEeeeccc---ceEeeecCCccEEEEEEeeecc-hhHHHhHHH
Q 015025          320 -----SNQLKNLLFRSCKYLKVID---V--DAPNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLN-THWYLKLKK  385 (414)
Q Consensus       320 -----~~~L~~L~l~~c~~L~~l~---i--~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~-~~~~~~l~~  385 (414)
                           +++|+.|+++++. +..++   .  ..++|+.+++.++.+   |....++++|+.+++..+...+ ......++.
T Consensus       482 ~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             EECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             ccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence                 1278888887763 33333   1  456788888877763   3344467788888875321000 000122334


Q ss_pred             HhccCcceeEEEEEEE
Q 015025          386 FLGVSKQIESLKLSLY  401 (414)
Q Consensus       386 ~l~~~~~L~~L~i~~~  401 (414)
                      .+.++++|++|+++.+
T Consensus       561 ~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          561 GITLCPSLTQLQIGSN  576 (636)
T ss_dssp             TGGGCSSCCEEECCSS
T ss_pred             HHhcCCCCCEEECCCC
Confidence            4567777887777644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.34  E-value=3.4e-12  Score=119.08  Aligned_cols=233  Identities=15%  Similarity=0.047  Sum_probs=155.3

Q ss_pred             cCceeeEEEeeeCCCccccCCc-cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      +++++|+  +..+..  ..++. .+..+++|++|++++|.+....  .+..+++|++|+++++.++. .....+.++++|
T Consensus        52 ~~L~~L~--l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLD--LSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEE--CTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred             ccCcEEE--CCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence            5788888  654332  34444 5667899999999999876532  46788999999999998842 223346789999


Q ss_pred             cEEEeeccCCCce---eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEe
Q 015025          210 EDLCFSNCWGLKH---LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  282 (414)
Q Consensus       210 e~L~l~~~~~~~~---~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (414)
                      ++|++.+|.....   -.+..+++|+.|+++++. .+..+    ...+++|++|+++.+......+..+..+++|++|++
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            9999998864321   124568999999999884 23332    235789999999965543322345678899999999


Q ss_pred             eecccchHHHHHHhhcCCCCcEEEecCccccccc------cccccccceEEeccCCC----ceeee---ccCCccceEEe
Q 015025          283 VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI------KISSNQLKNLLFRSCKY----LKVID---VDAPNLLLFTY  349 (414)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~------~~~~~~L~~L~l~~c~~----L~~l~---i~~~~L~~l~~  349 (414)
                      +++.+.... ..+...+++|+.|++++|......      ......++.+++.++.-    +..++   -..++|+.+++
T Consensus       206 ~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L  284 (353)
T 2z80_A          206 HMKQHILLL-EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF  284 (353)
T ss_dssp             ECSCSTTHH-HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred             CCCccccch-hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence            999875433 344567899999999998433211      11234556666555421    11111   23567888888


Q ss_pred             eecccc---eE-eeecCCccEEEEEEe
Q 015025          350 EFNPIP---II-SINVPCPWKVSFVCK  372 (414)
Q Consensus       350 ~~~~~~---~~-~~~~~~L~~l~i~~~  372 (414)
                      .++.+.   .. ..++++|+++++..+
T Consensus       285 s~N~l~~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          285 SRNQLKSVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence            777632   22 246788999988733

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.33  E-value=4.2e-13  Score=134.60  Aligned_cols=77  Identities=21%  Similarity=0.078  Sum_probs=37.6

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      ++++.|+  +..+.  ...+| .+..+++|++|++++|.+...+.. .+++|++|+++++......   -+..+++|++|
T Consensus       285 ~~L~~L~--l~~~~--~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L  355 (606)
T 3vq2_A          285 ANVSAMS--LAGVS--IKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYL  355 (606)
T ss_dssp             TTCSEEE--EESCC--CCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEE
T ss_pred             CCCCEEE--ecCcc--chhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEE
Confidence            5666666  43322  23344 455566666666666665433323 5555555555555221000   12345555555


Q ss_pred             EeeccC
Q 015025          213 CFSNCW  218 (414)
Q Consensus       213 ~l~~~~  218 (414)
                      ++.+|.
T Consensus       356 ~ls~n~  361 (606)
T 3vq2_A          356 DLSRNA  361 (606)
T ss_dssp             ECCSSC
T ss_pred             ECcCCc
Confidence            555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.33  E-value=1.2e-12  Score=136.15  Aligned_cols=86  Identities=17%  Similarity=0.023  Sum_probs=38.9

Q ss_pred             ccccccccccEEEEecccccCC--ccccCCCCcceEEceeEEechHHHH-HHHhcCCcccEEEeeccCCCce---eeccC
Q 015025          154 QAIFSANSVTNLRLVWCRLEQP--FDSIMLCSLKKLTLERVCLDEQMVQ-KLASECPLLEDLCFSNCWGLKH---LCVSK  227 (414)
Q Consensus       154 ~~l~~~~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~~p~Le~L~l~~~~~~~~---~~~~~  227 (414)
                      ..+..+++|++|+|++|.+...  ..+..+++|++|+|+++.++...+. ..+.++++|++|++++|.....   -.+.+
T Consensus        67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence            3344455555555555544322  1344555555555555544321111 1133455555555555543211   11234


Q ss_pred             CCCCcEEEeeec
Q 015025          228 ASKLKIMEIRSF  239 (414)
Q Consensus       228 ~~~L~~L~i~~~  239 (414)
                      +++|+.|+++++
T Consensus       147 L~~L~~L~Ls~N  158 (844)
T 3j0a_A          147 LNSLKSIDFSSN  158 (844)
T ss_dssp             CSSCCEEEEESS
T ss_pred             CCCCCEEECCCC
Confidence            555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.33  E-value=1.3e-12  Score=130.76  Aligned_cols=255  Identities=17%  Similarity=0.109  Sum_probs=160.1

Q ss_pred             cCceeeEEEeeeCCCccccCCcccc-ccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      .+++.++  +..  .....+|..++ .+++|++|++++|.+...+  .+..+++|++|+|+++.++. .....+.++++|
T Consensus        51 ~~l~~l~--l~~--~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L  125 (597)
T 3oja_B           51 NNQKIVT--FKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLL  125 (597)
T ss_dssp             CCCSEEE--ESS--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCceEEE--eeC--CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCC
Confidence            4667777  432  33456666554 4899999999999876543  56789999999999998842 222345789999


Q ss_pred             cEEEeeccCCCceee---ccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeee
Q 015025          210 EDLCFSNCWGLKHLC---VSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVS  284 (414)
Q Consensus       210 e~L~l~~~~~~~~~~---~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (414)
                      +.|++.+|... .+.   +.++++|+.|++++|. ..+.. ....+++|++|.++.+....   ..++.+++|+.|++++
T Consensus       126 ~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSY  201 (597)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB---CCGGGCTTCSEEECCS
T ss_pred             CEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC---cChhhhhhhhhhhccc
Confidence            99999998643 322   3568999999999986 11111 12367899999998544321   1245566666666665


Q ss_pred             cccchHHHH--------------H-HhhcCCCCcEEEecCccccc-cccccccccceEEeccCCCceeee---ccCCccc
Q 015025          285 VYFADNEFN--------------H-LISKFPSLEDLFVTRCCLPG-KIKISSNQLKNLLFRSCKYLKVID---VDAPNLL  345 (414)
Q Consensus       285 ~~~~~~~~~--------------~-~~~~~~~L~~L~l~~c~~~~-~~~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~  345 (414)
                      +.++.-...              . .....++|+.|++++|.... .....+++|+.|+++++.--...+   ...++|+
T Consensus       202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  281 (597)
T 3oja_B          202 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE  281 (597)
T ss_dssp             SCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred             CccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence            544321000              0 00112456666666653222 122346788888887764222211   2467888


Q ss_pred             eEEeeecccc---eEeeecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          346 LFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       346 ~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      .|++.++.+.   .....+++|+.|++..+.-      ..++..+..+++|++|+++.+.
T Consensus       282 ~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l------~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          282 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHL------LHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             EEECTTSCCCEEECSSSCCTTCCEEECCSSCC------CCCGGGHHHHTTCSEEECCSSC
T ss_pred             EEECCCCCCCCCCcccccCCCCcEEECCCCCC------CccCcccccCCCCCEEECCCCC
Confidence            8888887743   3334588999999975432      1223335677899999887554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.32  E-value=9e-13  Score=120.87  Aligned_cols=194  Identities=15%  Similarity=0.018  Sum_probs=136.8

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEeccccc-CCc-cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLE-QPF-DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  210 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~-~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  210 (414)
                      +++++|+  +..+......+|..+..+++|++|++++|.+. ..+ ....+++|++|+++++.++. .+...+.++++|+
T Consensus        76 ~~L~~L~--L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~  152 (313)
T 1ogq_A           76 PYLNFLY--IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLV  152 (313)
T ss_dssp             TTCSEEE--EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCC
T ss_pred             CCCCeee--CCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCC
Confidence            6899999  65322334577888889999999999999876 222 57789999999999998842 2233357799999


Q ss_pred             EEEeeccCCCcee--eccCCC-CCcEEEeeecc-c-cceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeec
Q 015025          211 DLCFSNCWGLKHL--CVSKAS-KLKIMEIRSFS-E-EIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  285 (414)
Q Consensus       211 ~L~l~~~~~~~~~--~~~~~~-~L~~L~i~~~~-~-~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  285 (414)
                      +|++.+|.....+  .+..++ +|+.|+++++. . ........+ +|++|+++.+......+..+..+++|+.|+++++
T Consensus       153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  231 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence            9999998753232  234566 99999999885 1 111111133 3999999854333233344678999999999999


Q ss_pred             ccchHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCC
Q 015025          286 YFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCK  332 (414)
Q Consensus       286 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~  332 (414)
                      .++....  .+..+++|++|++++|.....+   ...+++|+.|+++++.
T Consensus       232 ~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          232 SLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ceeeecC--cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            8764322  2567899999999998544332   3346788888888774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.31  E-value=8.6e-13  Score=131.08  Aligned_cols=76  Identities=13%  Similarity=0.037  Sum_probs=41.4

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCC---ccccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQP---FDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      +++++|+  +..+..  ..+|..  .+++|++|++++|.+...   ..+..+++|++|+++++.++...    +.+++.|
T Consensus       100 ~~L~~L~--Ls~N~l--~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L  169 (562)
T 3a79_B          100 QDLEYLD--VSHNRL--QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHL  169 (562)
T ss_dssp             TTCCEEE--CTTSCC--CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTS
T ss_pred             CCCCEEE--CCCCcC--CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhc
Confidence            4566666  433222  245544  566677777777665431   14556677777777776664322    2233444


Q ss_pred             --cEEEeeccC
Q 015025          210 --EDLCFSNCW  218 (414)
Q Consensus       210 --e~L~l~~~~  218 (414)
                        ++|.+.+|.
T Consensus       170 ~L~~L~L~~n~  180 (562)
T 3a79_B          170 HLSCILLDLVS  180 (562)
T ss_dssp             CEEEEEEEESS
T ss_pred             eeeEEEeeccc
Confidence              666666653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.30  E-value=9.5e-12  Score=129.43  Aligned_cols=101  Identities=13%  Similarity=-0.001  Sum_probs=51.8

Q ss_pred             CCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEE
Q 015025          251 PSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLL  327 (414)
Q Consensus       251 p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~  327 (414)
                      ++|+.|+++.+......+..+..+++|+.|+++++.+.... ...+..+++|++|++++|.....   .....++|+.|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            46666666633322222233456677777777776665422 12345567777777777633221   122345666666


Q ss_pred             eccCCCceeee----ccCCccceEEeeecc
Q 015025          328 FRSCKYLKVID----VDAPNLLLFTYEFNP  353 (414)
Q Consensus       328 l~~c~~L~~l~----i~~~~L~~l~~~~~~  353 (414)
                      ++++ .+..+.    -..++|+.+++.++.
T Consensus       345 L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          345 LQKN-HIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             CCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence            6655 222221    124455555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.29  E-value=7.4e-12  Score=114.44  Aligned_cols=186  Identities=13%  Similarity=0.088  Sum_probs=130.4

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+..  ..++ .+..+++|++|++++|.+...+....+++|++|+++++.++.-  . -+..+++|++|
T Consensus        41 ~~L~~L~--l~~~~i--~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L  112 (308)
T 1h6u_A           41 DGITTLS--AFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTL  112 (308)
T ss_dssp             HTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEE
T ss_pred             CCcCEEE--eeCCCc--cCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEE
Confidence            6888888  654332  3345 4667899999999999877655577889999999999988432  1 26779999999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  291 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (414)
                      ++.+|.......+..+++|+.|++++|. ..+.. ...+++|++|+++.+.... ... +..+++|+.|+++++.+++..
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh
Confidence            9998875333335678899999999886 22221 2367889999988554322 221 677889999999888776533


Q ss_pred             HHHHhhcCCCCcEEEecCccccccc-cccccccceEEeccCC
Q 015025          292 FNHLISKFPSLEDLFVTRCCLPGKI-KISSNQLKNLLFRSCK  332 (414)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~c~~~~~~-~~~~~~L~~L~l~~c~  332 (414)
                      .   +..+++|+.|++++|...... ...+++|+.|++++++
T Consensus       190 ~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          190 P---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             G---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             h---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence            2   577889999999887432211 2346677777777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.29  E-value=9e-12  Score=113.89  Aligned_cols=164  Identities=13%  Similarity=0.081  Sum_probs=68.7

Q ss_pred             cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025          159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  238 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~  238 (414)
                      +++|++|++++|.+...+....+++|++|+++++.++.-.  . +.++++|++|++.+|.....-.+..+++|+.|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCC
Confidence            3445555555554443333444555555555555442111  1 344555555555554422111233345555555554


Q ss_pred             cc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc-
Q 015025          239 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI-  316 (414)
Q Consensus       239 ~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~-  316 (414)
                      |. ..+.. ...+++|++|+++.+......  .+..+++|+.|+++++.+++-..   +..+++|+.|++++|...... 
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcChh
Confidence            43 11111 123455555555532221111  13445555555555554443111   344555555555554211110 


Q ss_pred             cccccccceEEeccC
Q 015025          317 KISSNQLKNLLFRSC  331 (414)
Q Consensus       317 ~~~~~~L~~L~l~~c  331 (414)
                      ...+++|+.|+++++
T Consensus       191 l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          191 LASLPNLIEVHLKNN  205 (308)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             hcCCCCCCEEEccCC
Confidence            123445555555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.26  E-value=4.8e-12  Score=121.75  Aligned_cols=213  Identities=16%  Similarity=0.095  Sum_probs=113.1

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--ee
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LC  224 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~  224 (414)
                      -..+|..+.  ++++.|++++|.+....  .+..+++|++|+|+++.++... ...+.++++|++|+|.+|.....  -.
T Consensus        55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~  131 (440)
T 3zyj_A           55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGA  131 (440)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred             cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhH
Confidence            344554443  45677777776654322  4556677777777766552111 12244567777777766643211  12


Q ss_pred             ccCCCCCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceEE-eecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025          225 VSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVV-EVARSPHLKKLDLVSVYFADNEFNHLISKF  299 (414)
Q Consensus       225 ~~~~~~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  299 (414)
                      +..+++|+.|+++++.  +..+.    ..+++|++|+++.+.....+.. .+..+++|+.|+++++.++.-.   .+..+
T Consensus       132 ~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l  206 (440)
T 3zyj_A          132 FVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP---NLTPL  206 (440)
T ss_dssp             SCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC---CCTTC
T ss_pred             hhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc---ccCCC
Confidence            3345677777777664  22221    2456777777763222222111 2445667777777766654321   24556


Q ss_pred             CCCcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eEeeecCCccEEE
Q 015025          300 PSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVS  368 (414)
Q Consensus       300 ~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~  368 (414)
                      ++|+.|++++|.....   ....+++|+.|+++++. +..+.    .+.++|+.+++.++.+.    .....+++|+.++
T Consensus       207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  285 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH  285 (440)
T ss_dssp             SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE
T ss_pred             cccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE
Confidence            6777777776632221   12234566666666553 33322    13466677776666532    2233567788887


Q ss_pred             EE
Q 015025          369 FV  370 (414)
Q Consensus       369 i~  370 (414)
                      +.
T Consensus       286 L~  287 (440)
T 3zyj_A          286 LH  287 (440)
T ss_dssp             CC
T ss_pred             cC
Confidence            76

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.26  E-value=7.5e-12  Score=120.82  Aligned_cols=203  Identities=18%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             cccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEe
Q 015025          161 SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEI  236 (414)
Q Consensus       161 ~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i  236 (414)
                      +|++|++++|.+....  .+..+++|+.|+|+++.++... ...+.++++|++|+|.+|.....  -.+..+++|+.|++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            4555555554433221  2344455555555554442110 11123445555555554432110  01223445555555


Q ss_pred             eeccccceeee----ecCCCeeEEEEEeeCCCCceEE-eecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          237 RSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVV-EVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       237 ~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      +++.  +..+.    ..+++|++|+++.+.....+.. .+..+++|+.|+++++.++.-   ..+..+++|+.|++++|.
T Consensus       155 ~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          155 RNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEEECTTSC
T ss_pred             CCCC--cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---ccccccccccEEECcCCc
Confidence            5443  11111    1344555555542222111111 133445555555555444321   113344455555555542


Q ss_pred             cccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eEeeecCCccEEEEE
Q 015025          312 LPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFV  370 (414)
Q Consensus       312 ~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~  370 (414)
                      ....   ....+++|+.|+++++. +..+.    -+.++|+.+++.++.+.    .....+++|+.+++.
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  298 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH  298 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred             CcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence            2211   11223445555554432 22211    12344555555554421    112345566666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.25  E-value=2.1e-12  Score=119.34  Aligned_cols=213  Identities=15%  Similarity=0.055  Sum_probs=137.9

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeecc
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVS  226 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~  226 (414)
                      ...+|..+.  +.|++|++++|.+...+  .+..+++|++|+++++.++... ...+.++++|++|++.+|.. ..+...
T Consensus        43 l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~l~~~  118 (330)
T 1xku_A           43 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQL-KELPEK  118 (330)
T ss_dssp             CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-SBCCSS
T ss_pred             ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcC-CccChh
Confidence            345665443  57899999998876543  4677899999999988774211 22356788999999988763 333333


Q ss_pred             CCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCC--ceEEeecCCCCccEEEeeecccchHHHHHHhhcCC
Q 015025          227 KASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP  300 (414)
Q Consensus       227 ~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  300 (414)
                      ..++|+.|+++++.  +..+    ...+++|++|+++.+....  .....+..+++|+.|+++++.++.-.    ....+
T Consensus       119 ~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~~  192 (330)
T 1xku_A          119 MPKTLQELRVHENE--ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPP  192 (330)
T ss_dssp             CCTTCCEEECCSSC--CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCT
T ss_pred             hcccccEEECCCCc--ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC----ccccc
Confidence            34789999998875  2222    2357889999888543321  12223567888999999888765411    11237


Q ss_pred             CCcEEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeeccc---ceEeeecCCccEEEEE
Q 015025          301 SLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPI---PIISINVPCPWKVSFV  370 (414)
Q Consensus       301 ~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~  370 (414)
                      +|++|++++|.....   ....+++|+.|+++++. +..+.    -..++|+.+++.++.+   |.....+++|+++++.
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence            899999988743322   22346788888888764 33332    2357788888888763   3334567788888887


Q ss_pred             Ee
Q 015025          371 CK  372 (414)
Q Consensus       371 ~~  372 (414)
                      .+
T Consensus       272 ~N  273 (330)
T 1xku_A          272 NN  273 (330)
T ss_dssp             SS
T ss_pred             CC
Confidence            33

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.25  E-value=6.3e-12  Score=127.76  Aligned_cols=262  Identities=18%  Similarity=0.118  Sum_probs=126.5

Q ss_pred             cCceeeEEEeeeCCCccccCCc-cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      +++++|+  +..+.  ...++. .+..+++|++|++++|.+....  ....+++|++|+++++.++. .....+.++++|
T Consensus        25 ~~l~~L~--Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLN--LTHNQ--LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEE--CCSSC--CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEE--CCCCC--CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCC
Confidence            4666666  43322  222333 3445667777777766654332  34556677777776665531 111124456777


Q ss_pred             cEEEeeccCCCce--eeccCCCCCcEEEeeecc-ccc-eeeeecCCCeeEEEEEeeCCCCceEEe--ecCCCCccEEEee
Q 015025          210 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVE--VARSPHLKKLDLV  283 (414)
Q Consensus       210 e~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~-~~l-~~~~~~~p~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~  283 (414)
                      ++|++.+|.....  -.+.++++|+.|++++|. ... ......+++|++|+++.+.........  ...+++|+.|+++
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS  179 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence            7777766643211  123456677777776664 111 111124666777776643221111111  1234667777776


Q ss_pred             ecccchHHHHHHhhcC---------------------------CCCcEEEecCccccccccc---cc--cccceEEeccC
Q 015025          284 SVYFADNEFNHLISKF---------------------------PSLEDLFVTRCCLPGKIKI---SS--NQLKNLLFRSC  331 (414)
Q Consensus       284 ~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~c~~~~~~~~---~~--~~L~~L~l~~c  331 (414)
                      ++.++.... ..+..+                           ++|+.|++.+|........   .+  ++|+.|+++++
T Consensus       180 ~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n  258 (680)
T 1ziw_A          180 SNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN  258 (680)
T ss_dssp             TCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred             CCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence            665443211 111222                           3445555554422111111   11  23777777666


Q ss_pred             CCceeee----ccCCccceEEeeecccc----eEeeecCCccEEEEEEeeecchhHHHhHH----HHhccCcceeEEEEE
Q 015025          332 KYLKVID----VDAPNLLLFTYEFNPIP----IISINVPCPWKVSFVCKGVLNTHWYLKLK----KFLGVSKQIESLKLS  399 (414)
Q Consensus       332 ~~L~~l~----i~~~~L~~l~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~l~----~~l~~~~~L~~L~i~  399 (414)
                      . +..+.    -..++|+.+++.++.+.    ....++++|+.+++..+..........++    ..++++++|++|+++
T Consensus       259 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~  337 (680)
T 1ziw_A          259 N-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME  337 (680)
T ss_dssp             C-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred             C-cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence            3 22222    23567777777766532    23345677887777532111110001111    245678888888877


Q ss_pred             EE
Q 015025          400 LY  401 (414)
Q Consensus       400 ~~  401 (414)
                      .+
T Consensus       338 ~n  339 (680)
T 1ziw_A          338 DN  339 (680)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.25  E-value=1.2e-11  Score=114.34  Aligned_cols=62  Identities=11%  Similarity=0.013  Sum_probs=25.6

Q ss_pred             cccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccC
Q 015025          155 AIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  218 (414)
Q Consensus       155 ~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~  218 (414)
                      .+..+++|++|++++|.+...+ ...+++|++|+++++.++. .....+.++++|+.|++.+|.
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A           95 AFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCCcCCccC-hhhcccccEEECCCCcccc-cCHhHhcCCccccEEECCCCc
Confidence            3334445555555544443221 1112445555554444421 111223445555555554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.25  E-value=1.1e-11  Score=113.90  Aligned_cols=227  Identities=18%  Similarity=0.140  Sum_probs=148.7

Q ss_pred             ccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025          158 SANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  235 (414)
Q Consensus       158 ~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  235 (414)
                      .+++|++|++++|.+....  ....+++|++|+++++.++... .  +..+++|++|++.+|. +..+.  ..++|+.|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCc-ccccc--CCCCcCEEE
Confidence            3678999999998876544  4578889999999888763211 1  5678899999998875 33333  347899999


Q ss_pred             eeeccccceee-eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc
Q 015025          236 IRSFSEEIEIV-EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG  314 (414)
Q Consensus       236 i~~~~~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  314 (414)
                      ++++.  +..+ ...+++|++|+++.+.........+..+++|+.|+++++.++......+...+++|++|++++|....
T Consensus       106 l~~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          106 AANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             CCSSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCCCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            88885  3322 23578899999885554433344556788999999988887764444445567889999998884322


Q ss_pred             cc-cccccccceEEeccCCCceeee---ccCCccceEEeeecccc---eEeeecCCccEEEEEEeeecchhHHHhHHHHh
Q 015025          315 KI-KISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP---IISINVPCPWKVSFVCKGVLNTHWYLKLKKFL  387 (414)
Q Consensus       315 ~~-~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~~l~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l  387 (414)
                      .- ....++|+.|+++++. +..+.   ...++|+.+++.++.+.   .....+++|+.+++..+.- ..   ..+...+
T Consensus       184 ~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~-~~---~~~~~~~  258 (317)
T 3o53_A          184 VKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF-HC---GTLRDFF  258 (317)
T ss_dssp             EECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC-BH---HHHHHHH
T ss_pred             cccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc-cC---cCHHHHH
Confidence            11 1136788889888763 33332   23677888888887743   2345678899988873321 11   2234445


Q ss_pred             ccCcceeEEE
Q 015025          388 GVSKQIESLK  397 (414)
Q Consensus       388 ~~~~~L~~L~  397 (414)
                      ..+++|+.+.
T Consensus       259 ~~~~~L~~l~  268 (317)
T 3o53_A          259 SKNQRVQTVA  268 (317)
T ss_dssp             HTCHHHHHHH
T ss_pred             hccccceEEE
Confidence            5555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.24  E-value=7.5e-12  Score=121.82  Aligned_cols=207  Identities=21%  Similarity=0.122  Sum_probs=131.2

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+... ...|..+..+++|++|++++|.+........+++|++|+|+++.++.      +...+.|+.|
T Consensus        34 ~~L~~L~--Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L  104 (487)
T 3oja_A           34 WNVKELD--LSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETL  104 (487)
T ss_dssp             GGCCEEE--CCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEE
T ss_pred             CCccEEE--eeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEE
Confidence            4788888  6543322 22345666788999999999887644447788899999999888742      2235888888


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCCceEEeec-CCCCccEEEeeecccch
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVA-RSPHLKKLDLVSVYFAD  289 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  289 (414)
                      ++.+|... .+....+++|+.|++++|. ..... ....+++|++|+++++......+..+. .+++|+.|+++++.++.
T Consensus       105 ~L~~N~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          105 HAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             ECCSSCCC-CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ECcCCcCC-CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88887643 3333456788888888776 22211 223578888888885443322222232 57888888888887765


Q ss_pred             HHHHHHhhcCCCCcEEEecCccccc--cccccccccceEEeccCCCceeeec---cCCccceEEeeecc
Q 015025          290 NEFNHLISKFPSLEDLFVTRCCLPG--KIKISSNQLKNLLFRSCKYLKVIDV---DAPNLLLFTYEFNP  353 (414)
Q Consensus       290 ~~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~~~L~~L~l~~c~~L~~l~i---~~~~L~~l~~~~~~  353 (414)
                      ..   ....+++|+.|++++|....  .....+++|+.|+++++. +..++.   ..++|+.+++.++.
T Consensus       184 ~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          184 VK---GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             EE---CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             cc---ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence            31   12347788888888773321  112345678888887753 434432   24667777777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.24  E-value=4.3e-12  Score=114.65  Aligned_cols=179  Identities=16%  Similarity=0.080  Sum_probs=101.9

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee---
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---  223 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---  223 (414)
                      ...+|..+  .++|++|+++++.+...+  .+..+++|++|+++++.++... ...+.++++|++|++.+|..+..+   
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence            34455433  357888888887765433  3567788888888777663211 122456788888888877643333   


Q ss_pred             eccCCCCCcEEEeeecc-ccc-eeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCC
Q 015025          224 CVSKASKLKIMEIRSFS-EEI-EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPS  301 (414)
Q Consensus       224 ~~~~~~~L~~L~i~~~~-~~l-~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      .+..+++|+.|+++++. ... ......+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~  178 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGLHS  178 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-HHHhcCccc
Confidence            23456788888887775 111 111224677777777744332211122456777777777777665322 123455677


Q ss_pred             CcEEEecCccccccc---cccccccceEEeccC
Q 015025          302 LEDLFVTRCCLPGKI---KISSNQLKNLLFRSC  331 (414)
Q Consensus       302 L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c  331 (414)
                      |+.|++.+|......   ...+++|+.|+++++
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence            777777776432221   123456666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.23  E-value=7.8e-12  Score=116.63  Aligned_cols=152  Identities=16%  Similarity=0.037  Sum_probs=85.3

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  210 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  210 (414)
                      +++++|+  +..+... ...|..+..+++|++|++++|.+...+  ....+++|++|+++++.+..-.....+.++++|+
T Consensus        76 ~~L~~L~--L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           76 VNLQALV--LTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ  152 (353)
T ss_dssp             TTCCEEE--CTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             CCCCEEE--CCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence            5677777  5433221 222344556777888888887766544  2456778888888777663211101345677888


Q ss_pred             EEEeeccCCCcee---eccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025          211 DLCFSNCWGLKHL---CVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  283 (414)
Q Consensus       211 ~L~l~~~~~~~~~---~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (414)
                      .|++.+|..+..+   .+.++++|+.|+++++.  +..+    ...+++|++|+++.+.........+..+++|+.|+++
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR  230 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEE
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECC
Confidence            8888777544433   23456777777777764  2211    1245667777776433211111112235666777766


Q ss_pred             ecccch
Q 015025          284 SVYFAD  289 (414)
Q Consensus       284 ~~~~~~  289 (414)
                      ++.++.
T Consensus       231 ~n~l~~  236 (353)
T 2z80_A          231 DTDLDT  236 (353)
T ss_dssp             SCBCTT
T ss_pred             CCcccc
Confidence            665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.23  E-value=6.9e-13  Score=125.40  Aligned_cols=177  Identities=16%  Similarity=0.114  Sum_probs=92.8

Q ss_pred             cCceeeEEEeeeCCCcc---ccCCccccccccccEEEEecccccCC----c-c-------ccCCCCcceEEceeEEechH
Q 015025          133 NGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQP----F-D-------SIMLCSLKKLTLERVCLDEQ  197 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~l~~~~l~~~----~-~-------~~~l~~L~~L~L~~~~~~~~  197 (414)
                      +++++|+  +..+....   ..++..+..+++|++|++++|.+...    + .       ...+++|++|+|+++.++..
T Consensus        32 ~~L~~L~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           32 DSVKEIV--LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             SCCCEEE--CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCccEEE--CCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            5677777  54332211   12333445567777777777643211    0 1       14567777777777777432


Q ss_pred             ---HHHHHHhcCCcccEEEeeccCCCce----ee--ccCC---------CCCcEEEeeeccc---ccee---eeecCCCe
Q 015025          198 ---MVQKLASECPLLEDLCFSNCWGLKH----LC--VSKA---------SKLKIMEIRSFSE---EIEI---VEISVPSL  253 (414)
Q Consensus       198 ---~l~~ll~~~p~Le~L~l~~~~~~~~----~~--~~~~---------~~L~~L~i~~~~~---~l~~---~~~~~p~L  253 (414)
                         .+...+..+++|+.|+|.+|.....    +.  +..+         ++|+.|++++|.-   .+..   ....+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               3444556677777777777653110    00  1112         6777777776641   1111   11245667


Q ss_pred             eEEEEEeeCCCCc-----eEEeecCCCCccEEEeeecccchH---HHHHHhhcCCCCcEEEecCcc
Q 015025          254 QQLTLLFYGARRP-----RVVEVARSPHLKKLDLVSVYFADN---EFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       254 ~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      ++|.++.+.....     .+..+..+++|+.|+++++.+++.   .+...+..+++|+.|+|++|.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            7777664332110     111334566677777766666532   233345566667777776664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.23  E-value=3.9e-12  Score=126.49  Aligned_cols=228  Identities=17%  Similarity=0.126  Sum_probs=162.6

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+  ....+|..+..+ +|++|++++|.+...+ ...+++|++|++.++........   ..+|+|++|
T Consensus       282 ~~L~~L~--l~~~--~l~~l~~~~~~~-~L~~L~l~~n~~~~l~-~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L  352 (570)
T 2z63_A          282 TNVSSFS--LVSV--TIERVKDFSYNF-GWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFL  352 (570)
T ss_dssp             TTCSEEE--EESC--EECSCCBCCSCC-CCSEEEEESCBCSSCC-BCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEE
T ss_pred             CcccEEE--ecCc--cchhhhhhhccC-CccEEeeccCcccccC-cccccccCEEeCcCCcccccccc---ccCCCCCEE
Confidence            6889998  6543  334688888888 9999999999887443 46889999999999877321111   679999999


Q ss_pred             EeeccCCCce----eeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCce-EEeecCCCCccEEEeeecc
Q 015025          213 CFSNCWGLKH----LCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVY  286 (414)
Q Consensus       213 ~l~~~~~~~~----~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~  286 (414)
                      ++.+|.....    ..+.++++|+.|++++|. ..+......+++|++|+++.+...... ...+..+++|+.|+++++.
T Consensus       353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  432 (570)
T 2z63_A          353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  432 (570)
T ss_dssp             ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred             eCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence            9998875322    123468999999999886 222222447899999999843321111 1235678999999999887


Q ss_pred             cchHHHHHHhhcCCCCcEEEecCcccc----ccccccccccceEEeccCCCceee-e---ccCCccceEEeeecccc---
Q 015025          287 FADNEFNHLISKFPSLEDLFVTRCCLP----GKIKISSNQLKNLLFRSCKYLKVI-D---VDAPNLLLFTYEFNPIP---  355 (414)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~c~~~----~~~~~~~~~L~~L~l~~c~~L~~l-~---i~~~~L~~l~~~~~~~~---  355 (414)
                      +.... ...+..+++|+.|++.+|...    ......+++|+.|++++|. +..+ +   -..++|+.+++.++.+.   
T Consensus       433 l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          433 TRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             CEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence            65432 234577899999999998543    2233457899999999885 3333 2   24688999999888743   


Q ss_pred             -eEeeecCCccEEEEEE
Q 015025          356 -IISINVPCPWKVSFVC  371 (414)
Q Consensus       356 -~~~~~~~~L~~l~i~~  371 (414)
                       ....++++|+.+++..
T Consensus       511 ~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          511 DGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             TTTTTTCTTCCEEECCS
T ss_pred             HHHhhcccCCcEEEecC
Confidence             2345788999999983

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.21  E-value=8.9e-13  Score=120.85  Aligned_cols=232  Identities=16%  Similarity=0.073  Sum_probs=121.5

Q ss_pred             cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHH-------HhcCCcccEEEeeccCCCceee--c--cC
Q 015025          159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKL-------ASECPLLEDLCFSNCWGLKHLC--V--SK  227 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l-------l~~~p~Le~L~l~~~~~~~~~~--~--~~  227 (414)
                      .++|++|+++++.+..+....  ..|+.|+++++.+....+...       ..++++|++|++.+|...+...  +  ..
T Consensus        42 ~~~L~~l~l~~n~l~~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           42 GRSLEYLLKRVDTEADLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EEECTTHHHHCCTTCCCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCCceeEeecccccccHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            345666666666552111111  126666666665521111111       1256777777777775432211  1  45


Q ss_pred             CCCCcEEEeeecc-ccceeeeec-----CCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH-HHHHh--hc
Q 015025          228 ASKLKIMEIRSFS-EEIEIVEIS-----VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE-FNHLI--SK  298 (414)
Q Consensus       228 ~~~L~~L~i~~~~-~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~--~~  298 (414)
                      +++|+.|+++++. .........     .++|++|+++.+.........+..+++|+.|+++++.+.+.. .....  ..
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            6777777777665 111111112     267777777754433222234556777777777777655431 11222  56


Q ss_pred             CCCCcEEEecCccccc--cc----cccccccceEEeccCCCceee----eccCCccceEEeeecccc---eEeeecCCcc
Q 015025          299 FPSLEDLFVTRCCLPG--KI----KISSNQLKNLLFRSCKYLKVI----DVDAPNLLLFTYEFNPIP---IISINVPCPW  365 (414)
Q Consensus       299 ~~~L~~L~l~~c~~~~--~~----~~~~~~L~~L~l~~c~~L~~l----~i~~~~L~~l~~~~~~~~---~~~~~~~~L~  365 (414)
                      +++|++|++++|....  .+    ....++|+.|+++++.--...    ....++|+.++++++.+.   ....  ++|+
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~  277 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS  277 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence            7777777777764321  11    123467777777766321111    112466777777776632   1111  6788


Q ss_pred             EEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          366 KVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       366 ~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                      +++++.+. .+.     ++. +..+++|++|+++.+
T Consensus       278 ~L~Ls~N~-l~~-----~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          278 VLDLSYNR-LDR-----NPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             EEECCSSC-CCS-----CCC-TTTSCEEEEEECTTC
T ss_pred             EEECCCCC-CCC-----Chh-HhhCCCCCEEeccCC
Confidence            88886442 121     122 677888888877543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.20  E-value=1.2e-11  Score=119.36  Aligned_cols=171  Identities=15%  Similarity=0.102  Sum_probs=77.2

Q ss_pred             cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee---eccCCC
Q 015025          155 AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKAS  229 (414)
Q Consensus       155 ~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---~~~~~~  229 (414)
                      .+..+++|++|++++|.+....  .+.++++|++|+|+++.++. .....+.++++|++|++.+|.. ..+   .+..++
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~  171 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVP  171 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCT
T ss_pred             HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCC
Confidence            3444556666666665543321  34455566666666555421 1111233455666666655542 111   122445


Q ss_pred             CCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEE
Q 015025          230 KLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDL  305 (414)
Q Consensus       230 ~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  305 (414)
                      +|+.|++++|. .+..+.    ..+++|++|+++.+.... ++ .+..+++|+.|+++++.++... ...+..+++|+.|
T Consensus       172 ~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L  247 (452)
T 3zyi_A          172 SLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKL  247 (452)
T ss_dssp             TCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEE
T ss_pred             cccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccC-cccccCccCCCEE
Confidence            56666555543 222221    134555555555332211 11 2344555555555555544321 1223445555555


Q ss_pred             EecCcccccc---ccccccccceEEeccC
Q 015025          306 FVTRCCLPGK---IKISSNQLKNLLFRSC  331 (414)
Q Consensus       306 ~l~~c~~~~~---~~~~~~~L~~L~l~~c  331 (414)
                      ++.+|.....   ....+++|+.|+++++
T Consensus       248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          248 WVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            5555422111   1122345555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.20  E-value=4.2e-12  Score=115.97  Aligned_cols=212  Identities=16%  Similarity=0.064  Sum_probs=115.4

Q ss_pred             cCceeeEEEeeeCCCccccCCccc-cccccccEEEEecccccCC----ccccCCCCcceEEceeEEechHHHHHHHhcCC
Q 015025          133 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQP----FDSIMLCSLKKLTLERVCLDEQMVQKLASECP  207 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l-~~~~~L~~L~l~~~~l~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p  207 (414)
                      +++++|+  +..+.  ...+|... ..+++|++|++++|.+...    .....+++|++|+++++.+..  +...+.+++
T Consensus        28 ~~l~~L~--L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~  101 (306)
T 2z66_A           28 SSATRLE--LESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLE  101 (306)
T ss_dssp             TTCCEEE--CCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCT
T ss_pred             CCCCEEE--CCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCC
Confidence            3566666  44322  23455443 3567777777777765422    133456777777777665521  111144577


Q ss_pred             cccEEEeeccCCCce---eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCC-ceEEeecCCCCccE
Q 015025          208 LLEDLCFSNCWGLKH---LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARR-PRVVEVARSPHLKK  279 (414)
Q Consensus       208 ~Le~L~l~~~~~~~~---~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~  279 (414)
                      +|++|++.++.....   -.+.++++|+.|+++++.  +...    ...+++|++|+++.+.... ..+..+..+++|+.
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            777777776643111   123356777777777664  2111    1245677777776433222 23334566777777


Q ss_pred             EEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeee---ccC-CccceEEeeec
Q 015025          280 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID---VDA-PNLLLFTYEFN  352 (414)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~---i~~-~~L~~l~~~~~  352 (414)
                      |+++++.++... ...+..+++|+.|++++|.....   ....+++|+.|+++++.--....   ... ++|+.+++.++
T Consensus       180 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          180 LDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             EECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             EECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            777777665422 12345667777777777633221   12235677777777663221111   123 36777777666


Q ss_pred             c
Q 015025          353 P  353 (414)
Q Consensus       353 ~  353 (414)
                      .
T Consensus       259 ~  259 (306)
T 2z66_A          259 D  259 (306)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.20  E-value=8.7e-12  Score=126.72  Aligned_cols=59  Identities=19%  Similarity=0.129  Sum_probs=28.4

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccc--cccEEEEecccccCCc--cccCCCCcceEEceeEEe
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSAN--SVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL  194 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~--~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~  194 (414)
                      .++++|+  +..+.. ....|..+..++  +|++|++++|.+....  .+..+++|++|+++++.+
T Consensus       222 ~~L~~L~--L~~n~l-~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (680)
T 1ziw_A          222 TSIRNLS--LSNSQL-STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI  284 (680)
T ss_dssp             SCCCEEE--CTTSCC-CEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred             ccccEEE--ccCCcc-cccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence            5666666  433211 122233333333  3666666666543321  344556666666665554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.19  E-value=6.1e-12  Score=113.65  Aligned_cols=191  Identities=14%  Similarity=0.034  Sum_probs=115.2

Q ss_pred             cCceeeEEEeeeCCCccccCC-ccccccccccEEEEecccccCCc--cccCCCCcceEEceeEE-echHHHHHHHhcCCc
Q 015025          133 NGVRELDFENITDENTVYTLP-QAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPL  208 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~  208 (414)
                      +++++|+  +..+..  ..++ ..+..+++|++|++++|.+....  .+..+++|++|+++++. ++.. ....+.++++
T Consensus        32 ~~l~~L~--l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~  106 (285)
T 1ozn_A           32 AASQRIF--LHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGR  106 (285)
T ss_dssp             TTCSEEE--CTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTT
T ss_pred             CCceEEE--eeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcC
Confidence            4677777  543222  2233 34556788888888887665432  45677888888888875 4211 1222456788


Q ss_pred             ccEEEeeccCCCce--eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEE-eecCCCCccEEE
Q 015025          209 LEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVV-EVARSPHLKKLD  281 (414)
Q Consensus       209 Le~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~  281 (414)
                      |++|++.+|.....  -.+.++++|+.|+++++.  +..+    ...+++|++|+++.+... .... .+..+++|+.|+
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEE
Confidence            88888887764322  123456788888888775  2222    125678888888844332 2221 255678888888


Q ss_pred             eeecccchHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCC
Q 015025          282 LVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCK  332 (414)
Q Consensus       282 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~  332 (414)
                      ++++.++... ...+..+++|+.|++++|......   ...+++|+.|++++++
T Consensus       184 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          184 LHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             CCCCcccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            8887765432 233566788888888887332211   2335677777776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.18  E-value=1.3e-10  Score=115.36  Aligned_cols=166  Identities=13%  Similarity=0.049  Sum_probs=103.2

Q ss_pred             CCCcEEEeeeccccceeee--ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH-HHHHHhhcCCCCcEE
Q 015025          229 SKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN-EFNHLISKFPSLEDL  305 (414)
Q Consensus       229 ~~L~~L~i~~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L  305 (414)
                      ++|+.|+++++.  +..+.  ..+++|++|+++.+......+..+..+++|+.|+++++.++.- .+...+..+++|+.|
T Consensus       331 ~~L~~L~l~~n~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          331 MNIKMLSISDTP--FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             CCCSEEEEESSC--CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             CcceEEEccCCC--cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence            458888888875  22222  4678899999986544443344567889999999998887752 333456788999999


Q ss_pred             EecCccccccc----cccccccceEEeccCCCceeeeccC-CccceEEeeeccc---ceEeeecCCccEEEEEEeeecch
Q 015025          306 FVTRCCLPGKI----KISSNQLKNLLFRSCKYLKVIDVDA-PNLLLFTYEFNPI---PIISINVPCPWKVSFVCKGVLNT  377 (414)
Q Consensus       306 ~l~~c~~~~~~----~~~~~~L~~L~l~~c~~L~~l~i~~-~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~  377 (414)
                      ++++|.....+    ....++|+.|+++++.--...+... ++|+.+++.++.+   |.....+++|+.+++..+.-   
T Consensus       409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l---  485 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL---  485 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCC---
T ss_pred             ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCC---
Confidence            99988543322    2335678888887774222222222 4677777777652   32223667777777764321   


Q ss_pred             hHHHhHHH-HhccCcceeEEEEEEEE
Q 015025          378 HWYLKLKK-FLGVSKQIESLKLSLYS  402 (414)
Q Consensus       378 ~~~~~l~~-~l~~~~~L~~L~i~~~~  402 (414)
                         ..++. .+..+++|+.|+++.++
T Consensus       486 ---~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          486 ---KSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             ---CCCCTTSTTTCTTCCCEECCSCC
T ss_pred             ---CCCCHHHHhcCCCCCEEEecCCC
Confidence               11111 35667777777666443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.17  E-value=2.1e-11  Score=117.26  Aligned_cols=173  Identities=17%  Similarity=0.137  Sum_probs=82.0

Q ss_pred             ccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee---ccCCCC
Q 015025          156 IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASK  230 (414)
Q Consensus       156 l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~---~~~~~~  230 (414)
                      +..+++|++|++++|.+...+  .+..+++|++|+|+++.++. .....+.++++|++|++.+|..+..+.   +.++++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  186 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN  186 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence            334566666666665554332  24455666666666655421 011123455666666666555444332   234556


Q ss_pred             CcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecC
Q 015025          231 LKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  309 (414)
Q Consensus       231 L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  309 (414)
                      |+.|++++|. ..+.. ...+++|++|+++.+......+..+..+++|+.|+++++.++... ...+..+++|+.|+|++
T Consensus       187 L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          187 LRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             CCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTT
T ss_pred             cCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCC
Confidence            6666666554 11111 124456666666533221111223445566666666655554322 12234556666666666


Q ss_pred             ccccc---cccccccccceEEeccC
Q 015025          310 CCLPG---KIKISSNQLKNLLFRSC  331 (414)
Q Consensus       310 c~~~~---~~~~~~~~L~~L~l~~c  331 (414)
                      |....   .....+++|+.|++.+.
T Consensus       265 N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          265 NNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCCccChhHhccccCCCEEEcCCC
Confidence            52221   11123455666655553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.16  E-value=1.4e-10  Score=115.48  Aligned_cols=211  Identities=18%  Similarity=0.119  Sum_probs=152.1

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+.  ...+|.   .+++|++|++++|.+...+.  .+++|++|+++++.++.  +.   ...++|++|
T Consensus        81 ~~L~~L~--Ls~N~--l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~--lp---~~l~~L~~L  146 (622)
T 3g06_A           81 PELRTLE--VSGNQ--LTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS--LP---VLPPGLQEL  146 (622)
T ss_dssp             TTCCEEE--ECSCC--CSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC--CC---CCCTTCCEE
T ss_pred             CCCCEEE--cCCCc--CCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc--CC---CCCCCCCEE
Confidence            6888888  65433  235665   56899999999998776443  77899999999998742  11   236899999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  292 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (414)
                      ++++|.. ..+.. ..++|+.|.+.++.  +..+...+++|+.|+++.+... .++   ..+++|+.|+++++.++.   
T Consensus       147 ~Ls~N~l-~~l~~-~~~~L~~L~L~~N~--l~~l~~~~~~L~~L~Ls~N~l~-~l~---~~~~~L~~L~L~~N~l~~---  215 (622)
T 3g06_A          147 SVSDNQL-ASLPA-LPSELCKLWAYNNQ--LTSLPMLPSGLQELSVSDNQLA-SLP---TLPSELYKLWAYNNRLTS---  215 (622)
T ss_dssp             ECCSSCC-SCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSS---
T ss_pred             ECcCCcC-CCcCC-ccCCCCEEECCCCC--CCCCcccCCCCcEEECCCCCCC-CCC---CccchhhEEECcCCcccc---
Confidence            9998854 33322 35789999999885  4444456789999999954432 222   245899999999887764   


Q ss_pred             HHHhhcCCCCcEEEecCccccccccccccccceEEeccCCCceeeeccCCccceEEeeeccc---ceEeeecCCccEEEE
Q 015025          293 NHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFNPI---PIISINVPCPWKVSF  369 (414)
Q Consensus       293 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~L~~l~i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i  369 (414)
                        +...+++|+.|++++|. +..+...+++|+.|+++++ .++.++...++|+.+++.++.+   |....++++|+.|++
T Consensus       216 --l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          216 --LPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL  291 (622)
T ss_dssp             --CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred             --cCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence              22346889999999883 3345556789999999887 5666666678899999988873   334567889999999


Q ss_pred             EEe
Q 015025          370 VCK  372 (414)
Q Consensus       370 ~~~  372 (414)
                      ..+
T Consensus       292 ~~N  294 (622)
T 3g06_A          292 EGN  294 (622)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            744

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.15  E-value=1.9e-11  Score=109.64  Aligned_cols=169  Identities=14%  Similarity=0.116  Sum_probs=89.1

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|.  +..+..  ..++ .+..+++|++|++++|.+........+++|++|+++++.++. .....+.+++.|++|
T Consensus        41 ~~L~~L~--l~~~~i--~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           41 NSIDQII--ANNSDI--KSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKEL  114 (272)
T ss_dssp             TTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEE
T ss_pred             cceeeee--eCCCCc--cccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEE
Confidence            5666666  433221  2222 355567777777777766554455667777777777766631 112223556777777


Q ss_pred             EeeccCCCceee--ccCCCCCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecc
Q 015025          213 CFSNCWGLKHLC--VSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY  286 (414)
Q Consensus       213 ~l~~~~~~~~~~--~~~~~~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  286 (414)
                      ++.+|.......  +..+++|+.|++++|.  +..+.    ..+++|++|+++.+.........+..+++|+.|+++++.
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQ--LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCc--cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence            777665322111  3345677777776664  22111    245666666666433322111123455666666666655


Q ss_pred             cchHHHHHHhhcCCCCcEEEecCc
Q 015025          287 FADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       287 ~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ++... ...+..+++|+.|++.+|
T Consensus       193 l~~~~-~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          193 LKSVP-DGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CSCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCccC-HHHHhCCcCCCEEEccCC
Confidence            54321 123345566666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.14  E-value=1.9e-11  Score=115.40  Aligned_cols=198  Identities=14%  Similarity=0.068  Sum_probs=115.7

Q ss_pred             cCceeeEEEeeeCC--CccccCCccc-------cccccccEEEEecccccCCc------cccCCCCcceEEceeEEechH
Q 015025          133 NGVRELDFENITDE--NTVYTLPQAI-------FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLDEQ  197 (414)
Q Consensus       133 ~~l~~L~~~l~~~~--~~~~~l~~~l-------~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~~~~~  197 (414)
                      +++++|+  +..+.  .....+|..+       ..+++|++|++++|.+....      ....+++|++|+|++|.++..
T Consensus        60 ~~L~~L~--Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           60 KDLEIAE--FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TTCCEEE--CCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             CCccEEe--CcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            5777777  54321  1122334333       46778888888887766521      335677888888888877433


Q ss_pred             H---HHHHHhcC---------CcccEEEeeccCCC-cee-----eccCCCCCcEEEeeecccc------cee-eeecCCC
Q 015025          198 M---VQKLASEC---------PLLEDLCFSNCWGL-KHL-----CVSKASKLKIMEIRSFSEE------IEI-VEISVPS  252 (414)
Q Consensus       198 ~---l~~ll~~~---------p~Le~L~l~~~~~~-~~~-----~~~~~~~L~~L~i~~~~~~------l~~-~~~~~p~  252 (414)
                      .   +...+..+         +.|++|.+.+|... ..+     .+..+++|+.|++++|.-.      +.. ....+++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence            2   33333444         78888888777642 111     1224678888888877511      111 2235678


Q ss_pred             eeEEEEEeeCCC----CceEEeecCCCCccEEEeeecccchHHHH---HHhhc--CCCCcEEEecCccccc----ccc--
Q 015025          253 LQQLTLLFYGAR----RPRVVEVARSPHLKKLDLVSVYFADNEFN---HLISK--FPSLEDLFVTRCCLPG----KIK--  317 (414)
Q Consensus       253 L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~--~~~L~~L~l~~c~~~~----~~~--  317 (414)
                      |++|+++++...    ..++..+..+++|+.|+++++.+++....   ..+..  +++|+.|+|++|....    .+.  
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            888888754331    22233456678888888888877665333   33322  7788888888774433    122  


Q ss_pred             --ccccccceEEeccCC
Q 015025          318 --ISSNQLKNLLFRSCK  332 (414)
Q Consensus       318 --~~~~~L~~L~l~~c~  332 (414)
                        ..+++|+.|++++|+
T Consensus       298 l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          298 IDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHCTTCCEEECTTSB
T ss_pred             HHhcCCCceEEEccCCc
Confidence              235777777777663

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.14  E-value=7.4e-12  Score=112.32  Aligned_cols=186  Identities=15%  Similarity=0.067  Sum_probs=131.4

Q ss_pred             cccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee--ccCCCCCcEE
Q 015025          157 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC--VSKASKLKIM  234 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--~~~~~~L~~L  234 (414)
                      ..+++|+.|.++++.+........+++|++|+++++.++.-  . .+..+++|++|.+.+|.......  +..+++|+.|
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            34678999999999887666678899999999999988431  2 36789999999999886432221  4567999999


Q ss_pred             Eeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          235 EIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       235 ~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ++++|.  +..+    ...+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++|+.|++.+|
T Consensus       115 ~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          115 VLVENQ--LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             ECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             ECCCCc--CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCC
Confidence            999886  2222    235789999999965443222223567899999999999876432 234567899999999998


Q ss_pred             cccccc---cccccccceEEeccCCCceeeeccCCccceEEeeec
Q 015025          311 CLPGKI---KISSNQLKNLLFRSCKYLKVIDVDAPNLLLFTYEFN  352 (414)
Q Consensus       311 ~~~~~~---~~~~~~L~~L~l~~c~~L~~l~i~~~~L~~l~~~~~  352 (414)
                      ......   ...+++|+.|++.+++-.    -.+|.++.+...++
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWIN  232 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHHHH
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHHHH
Confidence            433222   234688999999887422    23555665554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.14  E-value=3.6e-11  Score=107.67  Aligned_cols=168  Identities=17%  Similarity=0.073  Sum_probs=81.2

Q ss_pred             ccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEE
Q 015025          160 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIME  235 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~  235 (414)
                      ++|++|+++++.+...+  .+..+++|++|+++++.++. ....++.++++|++|++.++.....  -.+.++++|+.|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            45666666666654433  34556666666666665521 1112234566666666666543111  1123456666666


Q ss_pred             eeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          236 IRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       236 i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      ++++.  +..+    ...+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++|+.|++++|.
T Consensus       116 l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          116 LDRNQ--LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             CCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCCCc--cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCc
Confidence            66553  1111    124556666666633221111111345566666666665554321 1123445666666666652


Q ss_pred             cccc---ccccccccceEEeccC
Q 015025          312 LPGK---IKISSNQLKNLLFRSC  331 (414)
Q Consensus       312 ~~~~---~~~~~~~L~~L~l~~c  331 (414)
                      ....   ....+++|+.|++.++
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          193 LKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCHHHhccccCCCEEEecCC
Confidence            2111   1122445555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.14  E-value=4.7e-11  Score=108.12  Aligned_cols=165  Identities=16%  Similarity=0.066  Sum_probs=105.0

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+..  ..++ .+..+++|++|++++|.+........+++|+.|+++++.++.  +.. +..+++|+.|
T Consensus        46 ~~L~~L~--l~~~~i--~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           46 NSIDQII--ANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (291)
T ss_dssp             HTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             CcccEEE--ccCCCc--ccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEE
Confidence            5777777  543322  2333 356678888888888877655456778888888888887732  222 5678888888


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  291 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (414)
                      ++.+|.....-.+..+++|+.|++++|. ..+ .....+++|++|+++.+.......  +..+++|+.|+++++.+++- 
T Consensus       118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-  193 (291)
T 1h6t_A          118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-  193 (291)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred             ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-
Confidence            8887764332234456788888888775 222 112256777777777443322212  56677777777777766552 


Q ss_pred             HHHHhhcCCCCcEEEecCcc
Q 015025          292 FNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~c~  311 (414)
                        ..+..+++|+.|++.+|+
T Consensus       194 --~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          194 --RALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             --GGGTTCTTCSEEEEEEEE
T ss_pred             --hhhccCCCCCEEECcCCc
Confidence              125667777777777763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.14  E-value=1.6e-11  Score=113.45  Aligned_cols=254  Identities=14%  Similarity=0.024  Sum_probs=122.3

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  210 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  210 (414)
                      ++++.|+  +..+... .-.|..+..+++|++|++++|.+....  .+..+++|++|+++++.++.  +..  ...+.|+
T Consensus        54 ~~l~~L~--l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~  126 (332)
T 2ft3_A           54 PDTTLLD--LQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLV  126 (332)
T ss_dssp             TTCCEEE--CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCC
T ss_pred             CCCeEEE--CCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCC
Confidence            4566666  4432211 112334555677777777776654331  35566777777777666531  110  1125677


Q ss_pred             EEEeeccCCCce--eeccCCCCCcEEEeeeccc-c--ceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeec
Q 015025          211 DLCFSNCWGLKH--LCVSKASKLKIMEIRSFSE-E--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSV  285 (414)
Q Consensus       211 ~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~-~--l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  285 (414)
                      +|++.+|.....  -.+.++++|+.|+++++.- .  .........+|++|+++.+... .++..  ..++|+.|+++++
T Consensus       127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~l~~~--~~~~L~~L~l~~n  203 (332)
T 2ft3_A          127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD--LPETLNELHLDHN  203 (332)
T ss_dssp             EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-SCCSS--SCSSCSCCBCCSS
T ss_pred             EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-ccCcc--ccCCCCEEECCCC
Confidence            777766653211  1134566777777766641 0  1111111115666666633221 11111  2256666666666


Q ss_pred             ccchHHHHHHhhcCCCCcEEEecCcccccc---ccccccccceEEeccCCCceeee---ccCCccceEEeeecccc-e--
Q 015025          286 YFADNEFNHLISKFPSLEDLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID---VDAPNLLLFTYEFNPIP-I--  356 (414)
Q Consensus       286 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~---i~~~~L~~l~~~~~~~~-~--  356 (414)
                      .++.... ..+..+++|+.|++++|.....   ....+++|+.|+++++. +..++   ...++|+.+++.++.+. .  
T Consensus       204 ~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~  281 (332)
T 2ft3_A          204 KIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGV  281 (332)
T ss_dssp             CCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred             cCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccCh
Confidence            5543221 2234556666666666532221   12234566666666552 33332   13456666666665522 0  


Q ss_pred             -Eee------ecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          357 -ISI------NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       357 -~~~------~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                       ...      ..++|+.+.+..... ..  ....+..+..+++|+.+.++.+
T Consensus       282 ~~~~~~~~~~~~~~l~~L~l~~N~~-~~--~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          282 NDFCPVGFGVKRAYYNGISLFNNPV-PY--WEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             TSSSCSSCCSSSCCBSEEECCSSSS-CG--GGSCGGGGTTBCCSTTEEC---
T ss_pred             hHccccccccccccccceEeecCcc-cc--cccCcccccccchhhhhhcccc
Confidence             010      135677777763321 11  1112344667777777776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.14  E-value=6.1e-12  Score=116.30  Aligned_cols=212  Identities=15%  Similarity=0.046  Sum_probs=123.1

Q ss_pred             ccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccC
Q 015025          150 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSK  227 (414)
Q Consensus       150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~  227 (414)
                      ..+|..+.  ++|++|++++|.+...+  ....+++|++|+++++.++... ...+.++++|++|++.+|.. ..+....
T Consensus        46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~l~~~~  121 (332)
T 2ft3_A           46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHL-VEIPPNL  121 (332)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCC-CSCCSSC
T ss_pred             cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcC-CccCccc
Confidence            45565443  57888888887765432  4567788888888877663211 12245678888888877753 2332222


Q ss_pred             CCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCC--ceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCc
Q 015025          228 ASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  303 (414)
Q Consensus       228 ~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  303 (414)
                      .++|+.|+++++. ..+.. ....+++|++|+++.+....  .....+..+ +|+.|+++++.++.-.    ....++|+
T Consensus       122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~----~~~~~~L~  196 (332)
T 2ft3_A          122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP----KDLPETLN  196 (332)
T ss_dssp             CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC----SSSCSSCS
T ss_pred             cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC----ccccCCCC
Confidence            3678888887775 11111 12356778888877433311  111223334 7777887777665411    01236788


Q ss_pred             EEEecCcccccc---ccccccccceEEeccCCCceeee----ccCCccceEEeeeccc---ceEeeecCCccEEEEEE
Q 015025          304 DLFVTRCCLPGK---IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPI---PIISINVPCPWKVSFVC  371 (414)
Q Consensus       304 ~L~l~~c~~~~~---~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~~  371 (414)
                      +|++++|.....   ....+++|+.|+++++. +..+.    -..++|+.+++.++.+   |.....+++|+.+++..
T Consensus       197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC
Confidence            888887733222   12345678888887663 32222    2356778888777763   33345677888888863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.14  E-value=6.1e-12  Score=115.23  Aligned_cols=194  Identities=16%  Similarity=0.106  Sum_probs=104.6

Q ss_pred             ccccccEEEEecccccCC-c-cc--cCCCCcceEEceeEEechH--HHHHHHh-cCCcccEEEeeccCCCcee--eccCC
Q 015025          158 SANSVTNLRLVWCRLEQP-F-DS--IMLCSLKKLTLERVCLDEQ--MVQKLAS-ECPLLEDLCFSNCWGLKHL--CVSKA  228 (414)
Q Consensus       158 ~~~~L~~L~l~~~~l~~~-~-~~--~~l~~L~~L~L~~~~~~~~--~l~~ll~-~~p~Le~L~l~~~~~~~~~--~~~~~  228 (414)
                      .+++|++|++++|.+... + ..  ..+++|++|+++++.++..  .+..+.. ..++|++|++.+|......  .+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            567888888888876532 2 22  6778888888888877432  2222111 1277788877777532211  12345


Q ss_pred             CCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccch--HHHHHHhhcCCCCcEEE
Q 015025          229 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLF  306 (414)
Q Consensus       229 ~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~  306 (414)
                      ++|+.|+++++. ....+.                 ......+..+++|+.|+++++.++.  .....++..+++|+.|+
T Consensus       173 ~~L~~L~Ls~N~-l~~~~~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~  234 (312)
T 1wwl_A          173 PALSTLDLSDNP-ELGERG-----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD  234 (312)
T ss_dssp             SSCCEEECCSCT-TCHHHH-----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred             CCCCEEECCCCC-cCcchH-----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence            566666666553 000000                 0000112456677777777766653  22334445667777777


Q ss_pred             ecCccccccc----cccccccceEEeccCCCceeeeccC-CccceEEeeecccc--eEeeecCCccEEEEE
Q 015025          307 VTRCCLPGKI----KISSNQLKNLLFRSCKYLKVIDVDA-PNLLLFTYEFNPIP--IISINVPCPWKVSFV  370 (414)
Q Consensus       307 l~~c~~~~~~----~~~~~~L~~L~l~~c~~L~~l~i~~-~~L~~l~~~~~~~~--~~~~~~~~L~~l~i~  370 (414)
                      +++|......    ....++|+.|+++++. ++.++... ++|+.+++.++.+.  -....+++|+.+++.
T Consensus       235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~  304 (312)
T 1wwl_A          235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLK  304 (312)
T ss_dssp             CTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECT
T ss_pred             CCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEecc
Confidence            7776433321    1224677777776653 33333211 46777777766633  113356677777765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.13  E-value=5.7e-11  Score=101.06  Aligned_cols=145  Identities=20%  Similarity=0.203  Sum_probs=67.1

Q ss_pred             cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCc--eeeccCCCCCcEEEe
Q 015025          159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLK--HLCVSKASKLKIMEI  236 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~--~~~~~~~~~L~~L~i  236 (414)
                      +++|++|+++++.+...+....+++|++|+++++.+..-  . .+..+++|++|++.+|....  .-.+..+++|+.|++
T Consensus        43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            344555555555444322344445555555555433111  1 13345555555555544321  112234455555555


Q ss_pred             eecc-cc-ceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          237 RSFS-EE-IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       237 ~~~~-~~-l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ++|. .. .......+++|++|+++++.....++ .+..+++|+.|+++++.+++-.   .+..+++|+.|++.++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCc
Confidence            5553 00 01111234555555555332112222 3455666666666666655422   3455666666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.12  E-value=1e-10  Score=104.99  Aligned_cols=181  Identities=17%  Similarity=0.090  Sum_probs=104.2

Q ss_pred             ccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--
Q 015025          148 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--  223 (414)
Q Consensus       148 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--  223 (414)
                      ...++|..+.  ++|++|++++|.+...+  .+..+++|++|+++++.++... ...+.++++|+.|++.+|......  
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChh
Confidence            3455665443  57899999988765433  4567888999999888763211 122456888899988887642221  


Q ss_pred             eccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCC-ceEEeecCCCCccEEEeeecccchHH--HHHHhhc
Q 015025          224 CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNE--FNHLISK  298 (414)
Q Consensus       224 ~~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~  298 (414)
                      .+.++++|+.|++.++. ..+.. ....+++|++|+++.+.... .++..+..+++|+.|+++++.++...  ....+..
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence            24457888888888775 12211 12256777777777443322 12334566777888888777665421  1112233


Q ss_pred             CCCCc-EEEecCccccccc--cccccccceEEeccC
Q 015025          299 FPSLE-DLFVTRCCLPGKI--KISSNQLKNLLFRSC  331 (414)
Q Consensus       299 ~~~L~-~L~l~~c~~~~~~--~~~~~~L~~L~l~~c  331 (414)
                      ++.|. .|+++++......  .....+|+.|+++++
T Consensus       175 L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n  210 (276)
T 2z62_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN  210 (276)
T ss_dssp             CTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS
T ss_pred             ccccceeeecCCCcccccCccccCCCcccEEECCCC
Confidence            33333 6777766322111  111235666666655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.12  E-value=1.4e-11  Score=115.37  Aligned_cols=153  Identities=15%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             cccccEEEEecccccCCc------cccCCC-CcceEEceeEEech---HHHHHHHhcC-CcccEEEeeccCCCceee---
Q 015025          159 ANSVTNLRLVWCRLEQPF------DSIMLC-SLKKLTLERVCLDE---QMVQKLASEC-PLLEDLCFSNCWGLKHLC---  224 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~------~~~~l~-~L~~L~L~~~~~~~---~~l~~ll~~~-p~Le~L~l~~~~~~~~~~---  224 (414)
                      .++|++|++++|.+....      ....++ +|++|+|+++.+++   ..+..++..+ +.|++|++.+|.......   
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            344666666666554332      123445 56666666665532   2333333333 666666666654211100   


Q ss_pred             ---ccCC-CCCcEEEeeecc-ccc--eeee--e-c-CCCeeEEEEEeeCCCCc----eEEeecCCC-CccEEEeeecccc
Q 015025          225 ---VSKA-SKLKIMEIRSFS-EEI--EIVE--I-S-VPSLQQLTLLFYGARRP----RVVEVARSP-HLKKLDLVSVYFA  288 (414)
Q Consensus       225 ---~~~~-~~L~~L~i~~~~-~~l--~~~~--~-~-~p~L~~L~l~~~~~~~~----~~~~~~~~~-~L~~L~l~~~~~~  288 (414)
                         +..+ ++|+.|++++|. ...  ..+.  . . .++|++|+++++...+.    +...+...+ +|+.|+++++.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence               1122 466666666554 000  0000  0 1 23566666663332211    111112333 6666666666554


Q ss_pred             hH---HHHHHhhcCC-CCcEEEecCcc
Q 015025          289 DN---EFNHLISKFP-SLEDLFVTRCC  311 (414)
Q Consensus       289 ~~---~~~~~~~~~~-~L~~L~l~~c~  311 (414)
                      +.   .+...+..++ +|++|++++|.
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            32   2333444453 67777776663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.10  E-value=1.7e-10  Score=111.16  Aligned_cols=114  Identities=16%  Similarity=0.054  Sum_probs=64.4

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+..  ..+| .+..+++|++|++++|.+...+  ...++|++|+++++.++.  +.. +.++++|++|
T Consensus       131 ~~L~~L~--L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLG--VSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEE--CCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEE
T ss_pred             CCCCEEE--CcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEE
Confidence            4788888  554333  2466 4667888888888888766432  233578888887776632  221 4667777777


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEE
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLL  259 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~  259 (414)
                      .+.+|...+ +.. ..++|+.|++++|. ..+.. ...+++|++|+++
T Consensus       201 ~l~~N~l~~-l~~-~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~  245 (454)
T 1jl5_A          201 YADNNSLKK-LPD-LPLSLESIVAGNNILEELPE-LQNLPFLTTIYAD  245 (454)
T ss_dssp             ECCSSCCSS-CCC-CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECC
T ss_pred             ECCCCcCCc-CCC-CcCcccEEECcCCcCCcccc-cCCCCCCCEEECC
Confidence            777765322 111 12456666665554 11111 1144555555555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.10  E-value=7e-10  Score=106.86  Aligned_cols=157  Identities=17%  Similarity=0.032  Sum_probs=92.5

Q ss_pred             ccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeec
Q 015025          160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  239 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~  239 (414)
                      ++|++|++++|.+...+....+++|++|+++++.++.  +.   ...+.|++|++.+|.....-.+.++++|+.|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            4666666666665543345566677777777666531  11   123467777777665322223446778888888777


Q ss_pred             cccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccccccc
Q 015025          240 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKIS  319 (414)
Q Consensus       240 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~  319 (414)
                      .  +..+....++|++|+++.+... .++ .++.+++|+.|+++++.++.     +....++|+.|++++|... .+...
T Consensus       206 ~--l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~l~-~l~~~  275 (454)
T 1jl5_A          206 S--LKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNYLT-DLPEL  275 (454)
T ss_dssp             C--CSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSCCS-CCCCC
T ss_pred             c--CCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCccc-ccCcc
Confidence            4  3223333468888888854432 333 36788889999988877654     1123467777877776322 23223


Q ss_pred             ccccceEEeccC
Q 015025          320 SNQLKNLLFRSC  331 (414)
Q Consensus       320 ~~~L~~L~l~~c  331 (414)
                      .++|+.|+++++
T Consensus       276 ~~~L~~L~ls~N  287 (454)
T 1jl5_A          276 PQSLTFLDVSEN  287 (454)
T ss_dssp             CTTCCEEECCSS
T ss_pred             cCcCCEEECcCC
Confidence            455666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.10  E-value=2.7e-11  Score=110.78  Aligned_cols=181  Identities=18%  Similarity=0.134  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhcCceeeEEEeeeCCCccccCCccc--cccccccEEEEecccccCCc------cccCCCCcceEEceeEE
Q 015025          122 IVDRWIRLAVENGVRELDFENITDENTVYTLPQAI--FSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVC  193 (414)
Q Consensus       122 ~~~~w~~~~~~~~l~~L~~~l~~~~~~~~~l~~~l--~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~  193 (414)
                      .+..........++++|+  +..+.. ....|..+  ..+++|++|++++|.+....      ....+++|++|+++++.
T Consensus        80 ~~~~~~~~~~~~~L~~L~--l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~  156 (310)
T 4glp_A           80 LLVGALRVLAYSRLKELT--LEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH  156 (310)
T ss_dssp             HHHHHHHHHHHSCCCEEE--EESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred             HHHHHHHhcccCceeEEE--eeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence            344444444446788888  544322 23444444  55777888888887765421      12357777777777776


Q ss_pred             echHHHHHHHhcCCcccEEEeeccCCCce------eeccCCCCCcEEEeeecc-ccceee----eecCCCeeEEEEEeeC
Q 015025          194 LDEQMVQKLASECPLLEDLCFSNCWGLKH------LCVSKASKLKIMEIRSFS-EEIEIV----EISVPSLQQLTLLFYG  262 (414)
Q Consensus       194 ~~~~~l~~ll~~~p~Le~L~l~~~~~~~~------~~~~~~~~L~~L~i~~~~-~~l~~~----~~~~p~L~~L~l~~~~  262 (414)
                      +.. .....+.++++|++|++++|...+.      .....+++|+.|++++|. ..+...    ...+++|++|+++.+.
T Consensus       157 l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          157 SPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             SCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred             cch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence            621 1112244677777777777764321      112346677777777664 111111    1244666666666433


Q ss_pred             CCCceEEeecCC---CCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          263 ARRPRVVEVARS---PHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       263 ~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      .....+..+..+   ++|+.|+++++.++.  +..  .-+++|+.|++++|
T Consensus       236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N  282 (310)
T 4glp_A          236 LRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSN  282 (310)
T ss_dssp             CCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSC
T ss_pred             CCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCC
Confidence            322212222233   566666666665542  111  11256666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.09  E-value=1.8e-10  Score=104.35  Aligned_cols=167  Identities=16%  Similarity=0.108  Sum_probs=125.2

Q ss_pred             cccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEe
Q 015025          157 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  236 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i  236 (414)
                      ..+++|++|++++|.+...+....+++|++|+++++.++...  . +.++++|+.|.+.+|.....-.+..+++|+.|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence            357889999999998876656778999999999999884322  1 7789999999999987533333567899999999


Q ss_pred             eecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc
Q 015025          237 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK  315 (414)
Q Consensus       237 ~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~  315 (414)
                      ++|. ..+. ....+++|++|+++.+.... . ..+..+++|+.|+++++.+++...   +..+++|+.|++++|....-
T Consensus       120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          120 EHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCCCh-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC
Confidence            9886 2221 12368999999999654432 2 346789999999999998876432   77899999999999833211


Q ss_pred             -ccccccccceEEeccCC
Q 015025          316 -IKISSNQLKNLLFRSCK  332 (414)
Q Consensus       316 -~~~~~~~L~~L~l~~c~  332 (414)
                       ....+++|+.|++++++
T Consensus       194 ~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          194 RALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GGGTTCTTCSEEEEEEEE
T ss_pred             hhhccCCCCCEEECcCCc
Confidence             13346789999888763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.08  E-value=9.1e-11  Score=103.01  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=48.5

Q ss_pred             ccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEE-echHHHHHHHhcCCcccEEEeeccCCCceee--
Q 015025          150 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLLEDLCFSNCWGLKHLC--  224 (414)
Q Consensus       150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~--  224 (414)
                      .++|. +  .++|++|+++++.+...+  .+..+++|++|+++++. ++.- ....+.++++|++|++.+|..+..+.  
T Consensus        24 ~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           24 QRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             cccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            44554 2  237888888887765433  34567777777777764 4210 01123456777777776644443332  


Q ss_pred             -ccCCCCCcEEEeeecc
Q 015025          225 -VSKASKLKIMEIRSFS  240 (414)
Q Consensus       225 -~~~~~~L~~L~i~~~~  240 (414)
                       +.++++|+.|+++++.
T Consensus       100 ~f~~l~~L~~L~l~~n~  116 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTG  116 (239)
T ss_dssp             SEECCTTCCEEEEEEEC
T ss_pred             HhCCCCCCCEEeCCCCC
Confidence             2245666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.07  E-value=1.3e-10  Score=115.51  Aligned_cols=166  Identities=16%  Similarity=0.073  Sum_probs=122.4

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      ++++.|.  +..+.  ...++ .+..+++|+.|+|++|.+...+....+++|+.|+|+++.+..  +. .+..+++|+.|
T Consensus        43 ~~L~~L~--l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           43 NSIDQII--ANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSL  114 (605)
T ss_dssp             TTCCCCB--CTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEE
T ss_pred             CCCCEEE--CcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEE
Confidence            5778887  54332  23344 467789999999999988765557889999999999998843  12 36779999999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNE  291 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (414)
                      +|.+|.....-.+..+++|+.|++++|. ..+ .....+++|+.|+++.+......+  +..+++|+.|+|+++.+.+- 
T Consensus       115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-  190 (605)
T 1m9s_A          115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-  190 (605)
T ss_dssp             ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred             EecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence            9998875433335568999999999886 222 122367899999999654433222  67899999999999888763 


Q ss_pred             HHHHhhcCCCCcEEEecCccc
Q 015025          292 FNHLISKFPSLEDLFVTRCCL  312 (414)
Q Consensus       292 ~~~~~~~~~~L~~L~l~~c~~  312 (414)
                        ..+..+++|+.|+|.+|+.
T Consensus       191 --~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          191 --RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             --GGGTTCTTCSEEECCSEEE
T ss_pred             --hHHccCCCCCEEEccCCcC
Confidence              3467889999999998843

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.06  E-value=1.1e-10  Score=116.21  Aligned_cols=167  Identities=16%  Similarity=0.111  Sum_probs=125.9

Q ss_pred             cccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEe
Q 015025          157 FSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEI  236 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i  236 (414)
                      ..+++|+.|++++|.+...+....+++|+.|+|+++.+.....   +..+++|+.|.|.+|.....-.+..+++|+.|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence            4567899999999988776667889999999999998843221   7789999999999987533334557899999999


Q ss_pred             eecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc-
Q 015025          237 RSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-  314 (414)
Q Consensus       237 ~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-  314 (414)
                      ++|. ..+.. ...+++|+.|.++.+.... + ..+..+++|+.|+|+++.+.+...   +..+++|+.|+|++|.... 
T Consensus       117 s~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          117 EHNGISDING-LVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             TTSCCCCCGG-GGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC
T ss_pred             cCCCCCCCcc-ccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC
Confidence            9886 22211 2368999999999654432 2 346789999999999998876432   6789999999999983322 


Q ss_pred             cccccccccceEEeccCC
Q 015025          315 KIKISSNQLKNLLFRSCK  332 (414)
Q Consensus       315 ~~~~~~~~L~~L~l~~c~  332 (414)
                      .....+++|+.|++++|+
T Consensus       191 ~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          191 RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GGGTTCTTCSEEECCSEE
T ss_pred             hHHccCCCCCEEEccCCc
Confidence            112346789999888763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.04  E-value=1.9e-10  Score=104.12  Aligned_cols=76  Identities=21%  Similarity=0.140  Sum_probs=34.2

Q ss_pred             ccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEE
Q 015025          160 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIME  235 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~  235 (414)
                      ++++.|++++|.+....  .+..+++|+.|+++++.++.-..   ...++.|+.|++.++... .+  .+.++++|+.|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            35556666655543321  34455555555555554421000   034555555555554321 11  112345555555


Q ss_pred             eeec
Q 015025          236 IRSF  239 (414)
Q Consensus       236 i~~~  239 (414)
                      ++++
T Consensus       107 l~~N  110 (290)
T 1p9a_G          107 VSFN  110 (290)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.03  E-value=1.4e-10  Score=103.80  Aligned_cols=171  Identities=16%  Similarity=0.076  Sum_probs=120.3

Q ss_pred             cCceeeEEEeeeCCCccccCCc-cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      +++++|+  +..+.  ...++. .+..+++|++|++++|.+...+  .+..+++|++|+++++.+..- ....+.++++|
T Consensus        37 ~~l~~L~--l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLD--LQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNL  111 (270)
T ss_dssp             TTCSEEE--CCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSC
T ss_pred             CCCCEEE--CcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCC
Confidence            4688888  65432  234443 4566899999999999876544  346789999999999887421 12335678999


Q ss_pred             cEEEeeccCCCce--eeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025          210 EDLCFSNCWGLKH--LCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  283 (414)
Q Consensus       210 e~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (414)
                      ++|.+.++.....  ..+..+++|+.|+++++.  +..+    ...+++|++|+++.+.........+..+++|+.|+++
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD  189 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence            9999998864222  124568999999999885  2222    2357899999998554332222235678999999999


Q ss_pred             ecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          284 SVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      ++.++... ...+..+++|+.|++.+|+
T Consensus       190 ~N~l~~~~-~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          190 NNQLKRVP-EGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCcCC-HHHhccccCCCEEEecCCC
Confidence            98876422 2345678999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.02  E-value=1.5e-10  Score=101.56  Aligned_cols=192  Identities=16%  Similarity=0.074  Sum_probs=111.0

Q ss_pred             cCceeeEEEeeeCCCccccCCc-cccccccccEEEEeccc-ccCCc--cccCCCCcceEEcee-EEechHHHHHHHhcCC
Q 015025          133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLER-VCLDEQMVQKLASECP  207 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~-l~~~~--~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~~p  207 (414)
                      .++++|+  +..+.  ...+|. .+..+++|++|++++|. +...+  .+..+++|++|++++ +.++.- ....+.+++
T Consensus        31 ~~l~~L~--l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLK--LIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELP  105 (239)
T ss_dssp             TTCCEEE--EESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCT
T ss_pred             CcccEEE--EeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCC
Confidence            3677787  54432  234444 44568899999999886 54332  456888999999988 554211 112245788


Q ss_pred             cccEEEeeccCCCceeeccCCCCCc---EEEeeeccccceeee----ecCCCee-EEEEEeeCCCCceEEeecCCCCccE
Q 015025          208 LLEDLCFSNCWGLKHLCVSKASKLK---IMEIRSFSEEIEIVE----ISVPSLQ-QLTLLFYGARRPRVVEVARSPHLKK  279 (414)
Q Consensus       208 ~Le~L~l~~~~~~~~~~~~~~~~L~---~L~i~~~~~~l~~~~----~~~p~L~-~L~l~~~~~~~~~~~~~~~~~~L~~  279 (414)
                      +|++|++.+|.....-.+..+++|+   .|+++++. .+..+.    ..+++|+ +|+++.+... .++......++|+.
T Consensus       106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA  183 (239)
T ss_dssp             TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred             CCCEEeCCCCCCccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence            9999999888643221234456666   88888772 222222    2466777 7777643321 22221112367777


Q ss_pred             EEeeecc-cchHHHHHHhhcC-CCCcEEEecCccccccccccccccceEEeccCC
Q 015025          280 LDLVSVY-FADNEFNHLISKF-PSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCK  332 (414)
Q Consensus       280 L~l~~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~  332 (414)
                      |+++++. ++.-. ...+..+ ++|+.|+++++....--...+++|+.|.+.++.
T Consensus       184 L~L~~n~~l~~i~-~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          184 VYLNKNKYLTVID-KDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             EECTTCTTCCEEC-TTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred             EEcCCCCCcccCC-HHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence            7777773 54211 2234556 777888877763322112246677777766554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.02  E-value=2.7e-10  Score=96.80  Aligned_cols=147  Identities=16%  Similarity=0.118  Sum_probs=97.0

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+..  ..+| .+..+++|++|++++|.+........+++|++|+++++.++...... +..+++|+.|
T Consensus        44 ~~L~~L~--l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYIT--LANINV--TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEE--EESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred             CCccEEe--ccCCCc--cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence            5777887  554332  2455 46677888888888887665556677888888888888775333222 4568888888


Q ss_pred             EeeccCCCc--eeeccCCCCCcEEEeeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccc
Q 015025          213 CFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  288 (414)
Q Consensus       213 ~l~~~~~~~--~~~~~~~~~L~~L~i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (414)
                      ++.+|....  .-.+..+++|+.|++++|. .+..+  ...+|+|++|+++.+...+ .. .+..+++|+.|+++++.+.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNG-AITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCT-BCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCC-CccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            888876533  2234467888888888874 12222  2367888888888554422 22 5678899999999888764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.99  E-value=1.9e-10  Score=74.80  Aligned_cols=40  Identities=23%  Similarity=0.332  Sum_probs=33.9

Q ss_pred             cccccCCCChHHHHHHhcCCChhhHHhhhccccchhhhhc
Q 015025            7 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   46 (414)
Q Consensus         7 ~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw~   46 (414)
                      ..+.++.||+|++.+||+|||.+|+++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4567999999999999999999999999999999997643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.98  E-value=7.2e-11  Score=107.98  Aligned_cols=135  Identities=12%  Similarity=0.024  Sum_probs=67.3

Q ss_pred             cccccEEEEecccccCCc--cc--cCCCCcceEEceeEEechHH--HH-HHHhcCCcccEEEeeccCCCcee--eccCCC
Q 015025          159 ANSVTNLRLVWCRLEQPF--DS--IMLCSLKKLTLERVCLDEQM--VQ-KLASECPLLEDLCFSNCWGLKHL--CVSKAS  229 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~--~~--~~l~~L~~L~L~~~~~~~~~--l~-~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~  229 (414)
                      +++|++|++++|.+....  ..  ..+++|++|+++++.++...  +. .-+..+++|++|++.+|......  .+.+++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            456788888777754322  22  56777777777777763210  11 11235677777777766532211  122345


Q ss_pred             CCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccch--HHHHHHhhcCCCCcEEEe
Q 015025          230 KLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD--NEFNHLISKFPSLEDLFV  307 (414)
Q Consensus       230 ~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l  307 (414)
                      +|+.|+++++. ......                 ......++.+++|+.|+++++.++.  .....++..+++|++|++
T Consensus       170 ~L~~L~Ls~N~-l~~~~~-----------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L  231 (310)
T 4glp_A          170 ALTSLDLSDNP-GLGERG-----------------LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL  231 (310)
T ss_dssp             TCCEEECCSCT-TCHHHH-----------------HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred             CCCEEECCCCC-Cccchh-----------------hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence            55555555553 000000                 0000112345566666666665542  111223455666666666


Q ss_pred             cCcc
Q 015025          308 TRCC  311 (414)
Q Consensus       308 ~~c~  311 (414)
                      ++|.
T Consensus       232 s~N~  235 (310)
T 4glp_A          232 SHNS  235 (310)
T ss_dssp             TTSC
T ss_pred             CCCC
Confidence            6663

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.94  E-value=9e-11  Score=109.79  Aligned_cols=58  Identities=19%  Similarity=0.030  Sum_probs=27.8

Q ss_pred             cccEEEEecccccCCc--cccC-----CCCcceEEceeEEech---HHHHHHHhcC-CcccEEEeeccC
Q 015025          161 SVTNLRLVWCRLEQPF--DSIM-----LCSLKKLTLERVCLDE---QMVQKLASEC-PLLEDLCFSNCW  218 (414)
Q Consensus       161 ~L~~L~l~~~~l~~~~--~~~~-----l~~L~~L~L~~~~~~~---~~l~~ll~~~-p~Le~L~l~~~~  218 (414)
                      +|++|++++|.+....  ....     +++|++|+|+++.+++   ..+...+..+ +.|++|++.+|.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence            5666666655544322  1111     2556666666555522   2233333344 556666665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.94  E-value=1.7e-10  Score=103.54  Aligned_cols=192  Identities=15%  Similarity=0.060  Sum_probs=119.0

Q ss_pred             cCceeeEEEeeeCCCccccCCc-cccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQ-AIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      +++++|+  +..+..  ..++. .+..+++|++|++++|.+....  .+..+++|++|+++++.++... ...+.++++|
T Consensus        28 ~~l~~L~--ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLD--LSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEE--CTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTC
T ss_pred             CCccEEE--CCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccc
Confidence            4678888  543322  23333 5566889999999998765433  4667889999999988773211 1234678999


Q ss_pred             cEEEeeccCCCc--eeeccCCCCCcEEEeeecc-cc--ceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCcc----EE
Q 015025          210 EDLCFSNCWGLK--HLCVSKASKLKIMEIRSFS-EE--IEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLK----KL  280 (414)
Q Consensus       210 e~L~l~~~~~~~--~~~~~~~~~L~~L~i~~~~-~~--l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L  280 (414)
                      ++|.+.+|....  ...+..+++|+.|+++++. ..  +......+++|++|+++++.........+..+++|+    .|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            999998876422  2335567899999998886 11  122233678999999985433221111233444555    78


Q ss_pred             EeeecccchHHHHHHhhcCCCCcEEEecCccccc---cccccccccceEEeccC
Q 015025          281 DLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---KIKISSNQLKNLLFRSC  331 (414)
Q Consensus       281 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~~~~~~~~L~~L~l~~c  331 (414)
                      +++++.++....  ......+|+.|++++|....   .....+++|+.|++++.
T Consensus       183 ~ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          183 DLSLNPMNFIQP--GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECCSSCCCEECT--TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ecCCCcccccCc--cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            888877654221  12233479999998874221   11234567777777754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.93  E-value=4.4e-10  Score=101.65  Aligned_cols=82  Identities=18%  Similarity=0.075  Sum_probs=37.7

Q ss_pred             ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcE
Q 015025          156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKI  233 (414)
Q Consensus       156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~  233 (414)
                      +..+++|++|++++|.+...+....+++|++|+++++.+.  .+...+.++++|+.|.+.+|.....  -.+.++++|+.
T Consensus        51 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           51 LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             GTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             hhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence            3345555555555555443322344555555555555542  1112234455555555555532111  11233455555


Q ss_pred             EEeeec
Q 015025          234 MEIRSF  239 (414)
Q Consensus       234 L~i~~~  239 (414)
                      |+++++
T Consensus       129 L~L~~N  134 (290)
T 1p9a_G          129 LYLKGN  134 (290)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.92  E-value=3.7e-10  Score=99.92  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=98.4

Q ss_pred             ccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--e
Q 015025          148 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--L  223 (414)
Q Consensus       148 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~  223 (414)
                      ....+|..+.  ++|+.|+++++.+....  .+..+++|++|+|+++.++. .....+.++++|+.|++.+|.....  -
T Consensus        25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~  101 (251)
T 3m19_A           25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLASLPLG  101 (251)
T ss_dssp             CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccccChh
Confidence            3456665544  57888999888865543  45678888888888887732 1122345678888888887764221  1


Q ss_pred             eccCCCCCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025          224 CVSKASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF  299 (414)
Q Consensus       224 ~~~~~~~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  299 (414)
                      .+..+++|+.|+++++.  +..+.    ..+++|++|+++.+.........++.+++|+.|+++++.++... ...+..+
T Consensus       102 ~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l  178 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQ--LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRL  178 (251)
T ss_dssp             TTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTC
T ss_pred             HhcccCCCCEEEcCCCc--CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHhCC
Confidence            23356788888888775  22221    24677777777744332211223456777888888777665322 1234567


Q ss_pred             CCCcEEEecCcc
Q 015025          300 PSLEDLFVTRCC  311 (414)
Q Consensus       300 ~~L~~L~l~~c~  311 (414)
                      ++|+.|++.+|+
T Consensus       179 ~~L~~L~l~~N~  190 (251)
T 3m19_A          179 GKLQTITLFGNQ  190 (251)
T ss_dssp             TTCCEEECCSCC
T ss_pred             CCCCEEEeeCCc
Confidence            777788777763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.86  E-value=1.3e-09  Score=97.10  Aligned_cols=147  Identities=13%  Similarity=0.073  Sum_probs=97.8

Q ss_pred             cccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEE
Q 015025          155 AIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIM  234 (414)
Q Consensus       155 ~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L  234 (414)
                      .+..+++|++|++++|.+...+....+++|+.|+++++.++...  . +.++++|+.|++++|.....-.... ++|+.|
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L  111 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRL  111 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEE
T ss_pred             chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEE
Confidence            34567889999999988766556678889999999988884222  1 6788999999998886432212223 788888


Q ss_pred             Eeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          235 EIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       235 ~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      ++++|. ..+.. ...+++|+.|+++.+.... .. .+..+++|+.|+++++.+++.   ..+..+++|+.|++++|+
T Consensus       112 ~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          112 FLDNNELRDTDS-LIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             ECCSSCCSBSGG-GTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             EccCCccCCChh-hcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence            888775 22211 2256777777777433321 22 355677778888777776654   345667777777777763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.81  E-value=1.7e-09  Score=95.53  Aligned_cols=168  Identities=13%  Similarity=0.012  Sum_probs=112.7

Q ss_pred             ccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEee
Q 015025          160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIR  237 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~  237 (414)
                      .+.++++++++.+...+ ..-.++|+.|+++++.++... ...+.++++|++|++.+|......  .+..+++|+.|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p-~~~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVP-SGIPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCC-SCCCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccC-CCCCCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45778888888776544 222378999999999883211 123567999999999998643221  24467899999999


Q ss_pred             eccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccc
Q 015025          238 SFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP  313 (414)
Q Consensus       238 ~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  313 (414)
                      ++.  +..+    ...+++|++|+++.+....-....+..+++|+.|+++++.++.-. ...+..+++|+.|++++|...
T Consensus        92 ~n~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           92 NNQ--LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCS
T ss_pred             CCc--ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCC
Confidence            885  2222    236789999999855443222222467889999999988776422 223567889999999988433


Q ss_pred             cc---ccccccccceEEeccCC
Q 015025          314 GK---IKISSNQLKNLLFRSCK  332 (414)
Q Consensus       314 ~~---~~~~~~~L~~L~l~~c~  332 (414)
                      ..   ....+++|+.|++.+++
T Consensus       169 ~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCHHHHhCCCCCCEEEeeCCc
Confidence            22   22345678888877653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.80  E-value=7.1e-10  Score=98.76  Aligned_cols=163  Identities=10%  Similarity=0.006  Sum_probs=115.3

Q ss_pred             cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025          159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  238 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~  238 (414)
                      ...++.++++++.+........+++|++|+++++.++.-  . -+..+++|++|++.+|.......+..+++|+.|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence            345666666666665444466789999999999988422  2 3677999999999998653333366789999999998


Q ss_pred             cc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc-cc
Q 015025          239 FS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG-KI  316 (414)
Q Consensus       239 ~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~~  316 (414)
                      +. ..+..+..  ++|++|+++.+.... . ..+..+++|+.|+++++.+++-.   .+..+++|+.|++++|.... ..
T Consensus        95 N~l~~l~~~~~--~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~~  167 (263)
T 1xeu_A           95 NRLKNLNGIPS--ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTGG  167 (263)
T ss_dssp             SCCSCCTTCCC--SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCTT
T ss_pred             CccCCcCcccc--CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchHH
Confidence            86 22222222  899999999654432 2 24678899999999999887642   46778999999999884322 22


Q ss_pred             cccccccceEEeccC
Q 015025          317 KISSNQLKNLLFRSC  331 (414)
Q Consensus       317 ~~~~~~L~~L~l~~c  331 (414)
                      ...+++|+.|+++++
T Consensus       168 l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             STTCCCCCEEEEEEE
T ss_pred             hccCCCCCEEeCCCC
Confidence            234677888888765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.79  E-value=7.7e-09  Score=101.85  Aligned_cols=181  Identities=13%  Similarity=0.000  Sum_probs=114.1

Q ss_pred             HhcCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025          131 VENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  210 (414)
Q Consensus       131 ~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  210 (414)
                      ...+++.|+  +..+..  ..+|..++  ++|++|++++|.+...+  ..+++|++|+++++.++.  +.. +.  .+|+
T Consensus        57 ~~~~L~~L~--Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~  123 (571)
T 3cvr_A           57 LINQFSELQ--LNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLK  123 (571)
T ss_dssp             HHTTCSEEE--CCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCC
T ss_pred             ccCCccEEE--eCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCC
Confidence            346888888  654332  34776554  78999999999887544  667899999999988743  332 22  2899


Q ss_pred             EEEeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH
Q 015025          211 DLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  290 (414)
Q Consensus       211 ~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  290 (414)
                      .|++++|.... +.. .+++|+.|++++|.  +..+...+++|++|+++.+.... ++. +.  ++|+.|++++|.++.-
T Consensus       124 ~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          124 HLDVDNNQLTM-LPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             EEECCSSCCSC-CCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred             EEECCCCcCCC-CCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence            99998886432 333 56889999998885  33333356789999988554322 333 33  7899999988877631


Q ss_pred             HH-H-HHhhcCCCCcEEEecCccc--cccccccccccceEEeccCC
Q 015025          291 EF-N-HLISKFPSLEDLFVTRCCL--PGKIKISSNQLKNLLFRSCK  332 (414)
Q Consensus       291 ~~-~-~~~~~~~~L~~L~l~~c~~--~~~~~~~~~~L~~L~l~~c~  332 (414)
                      .. . .+....+.|+.|++++|..  +.......++|+.|++++++
T Consensus       196 p~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             hhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence            11 0 0011112228888888732  22212236678888887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.77  E-value=1.7e-09  Score=89.32  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCCeeEEEEEeeCCCC-ceEEeecCCCCccEEEeeecccchHHH--HHHhhcCCCCcEEEecCcc
Q 015025          250 VPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADNEF--NHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       250 ~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~  311 (414)
                      +++|++|+++.+.... +....+..+++|+.|+++++.++....  ...+..+++|+.|++.+|.
T Consensus        94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            4455555555332211 011234567777777777776654321  2355667777777777663

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.76  E-value=2.4e-09  Score=91.72  Aligned_cols=89  Identities=20%  Similarity=0.090  Sum_probs=52.7

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--e
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C  224 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~  224 (414)
                      ..++|..+  .++|++|+++++.+...+  .+..+++|++|+++++.++. .....+.++++|++|++.+|......  .
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   95 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGV   95 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence            34455443  347888888888766443  24577888888888776631 11222456777777777776532111  1


Q ss_pred             ccCCCCCcEEEeeecc
Q 015025          225 VSKASKLKIMEIRSFS  240 (414)
Q Consensus       225 ~~~~~~L~~L~i~~~~  240 (414)
                      +..+++|+.|+++++.
T Consensus        96 ~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQ  111 (208)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hcCccCCCEEEcCCCc
Confidence            2345666666666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.74  E-value=8.7e-09  Score=84.95  Aligned_cols=105  Identities=21%  Similarity=0.063  Sum_probs=77.7

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+......+|..+..+++|++|++++|.+........+++|++|+++++.+... +.....++++|+.|
T Consensus        24 ~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred             ccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence            5788888  65544433477877778899999999999876655567889999999999988432 45556679999999


Q ss_pred             EeeccCCCce---eeccCCCCCcEEEeeecc
Q 015025          213 CFSNCWGLKH---LCVSKASKLKIMEIRSFS  240 (414)
Q Consensus       213 ~l~~~~~~~~---~~~~~~~~L~~L~i~~~~  240 (414)
                      ++.+|.....   ..+..+++|+.|++++|.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            9998864221   234456788888887775

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.71  E-value=1.5e-08  Score=94.14  Aligned_cols=64  Identities=20%  Similarity=0.127  Sum_probs=32.4

Q ss_pred             CCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccccc-ccccccceEEeccCCCceeee
Q 015025          274 SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYLKVID  338 (414)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~~L~~l~  338 (414)
                      .++|+.+.+..+..........+..+++|+.|++++|. ++.+. ..+.+|+.|.+.++.+++.++
T Consensus       176 ~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCC
T ss_pred             ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCC
Confidence            34566666643221111111234556677777777663 22222 235566666666666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.71  E-value=8.3e-10  Score=89.20  Aligned_cols=35  Identities=23%  Similarity=0.042  Sum_probs=19.2

Q ss_pred             ccccEEEEeccccc--CCc-cccCCCCcceEEceeEEe
Q 015025          160 NSVTNLRLVWCRLE--QPF-DSIMLCSLKKLTLERVCL  194 (414)
Q Consensus       160 ~~L~~L~l~~~~l~--~~~-~~~~l~~L~~L~L~~~~~  194 (414)
                      ++|++|++++|.+.  ..+ ....+++|+.|+++++.+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l   54 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL   54 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC
Confidence            56677777776655  211 234555555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.69  E-value=6.9e-09  Score=83.70  Aligned_cols=105  Identities=21%  Similarity=0.135  Sum_probs=80.8

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      +++++|+  +..+......+|..+..+++|++|++++|.+........+++|++|+++++.++.. +...+.++++|+.|
T Consensus        17 ~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEE
T ss_pred             ccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEE
Confidence            5788888  65544333478877788999999999999877655677899999999999998532 55667779999999


Q ss_pred             EeeccCCCce---eeccCCCCCcEEEeeecc
Q 015025          213 CFSNCWGLKH---LCVSKASKLKIMEIRSFS  240 (414)
Q Consensus       213 ~l~~~~~~~~---~~~~~~~~L~~L~i~~~~  240 (414)
                      ++.+|.....   ..+..+++|+.|++++|.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            9999874331   234567889999888875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.66  E-value=3.7e-08  Score=91.50  Aligned_cols=220  Identities=12%  Similarity=0.028  Sum_probs=138.6

Q ss_pred             CccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee
Q 015025          147 NTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC  224 (414)
Q Consensus       147 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~  224 (414)
                      ..-.++|..+.  +++++|+|+++.++..+  .+.++++|++|+|+++.+....-...+.+++.|.++.+..+..+..+.
T Consensus        19 ~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           19 SKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             TTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence            34457776653  58999999999876544  467899999999999875211111224568888887666666565543


Q ss_pred             ---ccCCCCCcEEEeeecc-ccceee-eecCCCeeEEEEEeeCCCCceEE-eecCC-CCccEEEeeecccchHHHHHHhh
Q 015025          225 ---VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGARRPRVV-EVARS-PHLKKLDLVSVYFADNEFNHLIS  297 (414)
Q Consensus       225 ---~~~~~~L~~L~i~~~~-~~l~~~-~~~~p~L~~L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~  297 (414)
                         +..+++|+.|+++++. ..+... .....++..+.+..+.....+.. .+..+ ..++.|+++++.++.-.  ....
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~--~~~f  174 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH--NSAF  174 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC--TTSS
T ss_pred             chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC--hhhc
Confidence               4467999999999886 222211 23456777888873333222221 12233 46889999998876411  1122


Q ss_pred             cCCCCcEEEecCcccccccc----ccccccceEEeccCCCceeeecc-CCccceEEeeecc----cceEeeecCCccEEE
Q 015025          298 KFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVIDVD-APNLLLFTYEFNP----IPIISINVPCPWKVS  368 (414)
Q Consensus       298 ~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~L~~l~i~-~~~L~~l~~~~~~----~~~~~~~~~~L~~l~  368 (414)
                      ..++|++|.+.++..++.+.    ...++|+.|+++++ .++.++.+ ..+|+++...+..    +| ...++++|+.++
T Consensus       175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~  252 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEAS  252 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEE
T ss_pred             cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCc
Confidence            34679999998776555553    34678999999876 46666543 3456666654433    22 223567888888


Q ss_pred             EEEe
Q 015025          369 FVCK  372 (414)
Q Consensus       369 i~~~  372 (414)
                      +.+.
T Consensus       253 l~~~  256 (350)
T 4ay9_X          253 LTYP  256 (350)
T ss_dssp             CSCH
T ss_pred             CCCC
Confidence            7643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.58  E-value=2.8e-08  Score=86.41  Aligned_cols=136  Identities=16%  Similarity=0.057  Sum_probs=76.3

Q ss_pred             ccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee-
Q 015025          148 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-  224 (414)
Q Consensus       148 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~-  224 (414)
                      ....+|..+.  ++|++|++++|.+....  .+..+++|+.|+|+++.++. .....+.++++|+.|+|.+|.. ..+. 
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l-~~l~~  105 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQL-TVLPS  105 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-CCCCT
T ss_pred             CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcC-CccCh
Confidence            3455565443  67888888888766542  35667778888887776621 1112234567777777766643 2211 


Q ss_pred             --ccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCC
Q 015025          225 --VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  302 (414)
Q Consensus       225 --~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  302 (414)
                        +..+++|+.|+++++.  +.                     .++..+..+++|+.|+++++.++.-. ...+..+++|
T Consensus       106 ~~~~~l~~L~~L~Ls~N~--l~---------------------~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  161 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNK--LT---------------------ELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSL  161 (229)
T ss_dssp             TTTTTCTTCCEEECCSSC--CC---------------------SCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred             hHhCcchhhCeEeccCCc--cc---------------------ccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCC
Confidence              2234556666555543  11                     22222345667777777666654321 1234556777


Q ss_pred             cEEEecCcc
Q 015025          303 EDLFVTRCC  311 (414)
Q Consensus       303 ~~L~l~~c~  311 (414)
                      +.|++.+|+
T Consensus       162 ~~L~l~~N~  170 (229)
T 3e6j_A          162 THAYLFGNP  170 (229)
T ss_dssp             CEEECTTSC
T ss_pred             CEEEeeCCC
Confidence            777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=4e-08  Score=91.23  Aligned_cols=133  Identities=20%  Similarity=0.201  Sum_probs=84.5

Q ss_pred             HHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeecc---ccceeee-ecCCCeeEEEEEeeCC--C-Cc-e--
Q 015025          198 MVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS---EEIEIVE-ISVPSLQQLTLLFYGA--R-RP-R--  267 (414)
Q Consensus       198 ~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~---~~l~~~~-~~~p~L~~L~l~~~~~--~-~~-~--  267 (414)
                      .+..++..+|+|++|.|.++.......+. .++|+.|++..|.   ..+..+. ..+|+|++|.++.+..  . .. +  
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence            45677888999999999887433222222 5899999998775   1122222 2689999999863111  0 10 1  


Q ss_pred             ---EEeecCCCCccEEEeeecccchHHHHHHh--hcCCCCcEEEecCcccccc----cc---ccccccceEEeccC
Q 015025          268 ---VVEVARSPHLKKLDLVSVYFADNEFNHLI--SKFPSLEDLFVTRCCLPGK----IK---ISSNQLKNLLFRSC  331 (414)
Q Consensus       268 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~----~~---~~~~~L~~L~l~~c  331 (414)
                         ......+|+|+.|.+..+.+.+.....+.  ..+|+|++|+|+.|.....    +.   ..+++|+.|+++.|
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence               11113589999999998888765433333  3578999999987632221    11   24678888888766

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.56  E-value=7.7e-08  Score=78.82  Aligned_cols=92  Identities=10%  Similarity=0.124  Sum_probs=72.4

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEE-echHHHHHHHhc---CCcccEEEeeccCCCce
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASE---CPLLEDLCFSNCWGLKH  222 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---~p~Le~L~l~~~~~~~~  222 (414)
                      ...+|..-.....|++|++++|.++...  ...+|++|++|+|++|. +++..+..+...   |+.|++|+|++|..++.
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            3456654444567999999999876543  45689999999999996 599999998763   78999999999987654


Q ss_pred             e---eccCCCCCcEEEeeecc
Q 015025          223 L---CVSKASKLKIMEIRSFS  240 (414)
Q Consensus       223 ~---~~~~~~~L~~L~i~~~~  240 (414)
                      -   .+..+++|++|++++|+
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHHhcCCCCCEEECCCCC
Confidence            2   23468999999999987

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.55  E-value=1.1e-08  Score=87.49  Aligned_cols=157  Identities=13%  Similarity=0.072  Sum_probs=94.2

Q ss_pred             cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee---ccCCCCCcEEEeeec
Q 015025          163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRSF  239 (414)
Q Consensus       163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~---~~~~~~L~~L~i~~~  239 (414)
                      +.++.+++.+...+ ....++|++|+++++.++. .....+.++++|++|++.++... .+.   +..+++|+.|+++++
T Consensus        10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence            34555555444332 2345789999999998742 22233567899999999987542 222   345789999999887


Q ss_pred             cccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc
Q 015025          240 SEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK  315 (414)
Q Consensus       240 ~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~  315 (414)
                      .  +..+    ...+++|++|+++.+.........+..+++|+.|+++++.++... ...+..+++|+.|++.+|+..  
T Consensus        87 ~--l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~--  161 (208)
T 2o6s_A           87 Q--LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD--  161 (208)
T ss_dssp             C--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC--
T ss_pred             c--CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee--
Confidence            5  2222    125677888888744332211112456778888888777665322 223456777888888776322  


Q ss_pred             ccccccccceEEec
Q 015025          316 IKISSNQLKNLLFR  329 (414)
Q Consensus       316 ~~~~~~~L~~L~l~  329 (414)
                        ..+++|+.|++.
T Consensus       162 --~~~~~l~~L~~~  173 (208)
T 2o6s_A          162 --CTCPGIRYLSEW  173 (208)
T ss_dssp             --CCTTTTHHHHHH
T ss_pred             --cCCCCHHHHHHH
Confidence              234455555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.54  E-value=1.8e-08  Score=87.09  Aligned_cols=87  Identities=14%  Similarity=0.062  Sum_probs=47.0

Q ss_pred             ccCCccccccccccEEEEecccccCCc---cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--e
Q 015025          150 YTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--C  224 (414)
Q Consensus       150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~  224 (414)
                      ..+|..+.  ..+++|+++++.+....   .+..+++|++|+|+++.++.-. ...+.++++|++|++.+|......  .
T Consensus        24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~  100 (220)
T 2v70_A           24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKM  100 (220)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred             ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhH
Confidence            44555443  34677777777765432   2456777777777776652111 112345666777766666432211  1


Q ss_pred             ccCCCCCcEEEeeec
Q 015025          225 VSKASKLKIMEIRSF  239 (414)
Q Consensus       225 ~~~~~~L~~L~i~~~  239 (414)
                      +.++++|+.|+++++
T Consensus       101 ~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A          101 FKGLESLKTLMLRSN  115 (220)
T ss_dssp             GTTCSSCCEEECTTS
T ss_pred             hcCCcCCCEEECCCC
Confidence            334556666666555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.53  E-value=3.9e-08  Score=98.71  Aligned_cols=218  Identities=17%  Similarity=0.087  Sum_probs=111.9

Q ss_pred             cccccEEEEecccccCCc---------------------cccCCCCcceEEceeEEec-hHHHHHHHhcCCcccEEEeec
Q 015025          159 ANSVTNLRLVWCRLEQPF---------------------DSIMLCSLKKLTLERVCLD-EQMVQKLASECPLLEDLCFSN  216 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~---------------------~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~~p~Le~L~l~~  216 (414)
                      +..|+.|++.+|.+....                     ....+++|+.|+++.+.+. ..........++.|+.|.+..
T Consensus       327 ~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~  406 (635)
T 4g8a_A          327 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF  406 (635)
T ss_dssp             CCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS
T ss_pred             chhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccc
Confidence            456777777776543321                     1223455555555544331 011111123445555555544


Q ss_pred             cCCCce-eeccCCCCCcEEEeeecc-ccc--eeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHH
Q 015025          217 CWGLKH-LCVSKASKLKIMEIRSFS-EEI--EIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  292 (414)
Q Consensus       217 ~~~~~~-~~~~~~~~L~~L~i~~~~-~~l--~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (414)
                      +..... .....+++|+.+.+..+. ...  ......+++++.+.++.+.........+..++.|+.|+++++.......
T Consensus       407 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~  486 (635)
T 4g8a_A          407 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  486 (635)
T ss_dssp             CSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC
Confidence            432111 112234566666665443 000  0111244566666655322211112223456788888887765443333


Q ss_pred             HHHhhcCCCCcEEEecCccccccc---cccccccceEEeccCCCceeee---c-cCCccceEEeeecccc----eEeeec
Q 015025          293 NHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVID---V-DAPNLLLFTYEFNPIP----IISINV  361 (414)
Q Consensus       293 ~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~L~~l~---i-~~~~L~~l~~~~~~~~----~~~~~~  361 (414)
                      ...+..+++|+.|+|++|......   ...+++|+.|+++++ ++..+.   + +.++|+.++++++.+.    ....++
T Consensus       487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence            334566788888888887432221   234567888888776 344332   2 3577888888887632    223344


Q ss_pred             -CCccEEEEE-Eeeecch
Q 015025          362 -PCPWKVSFV-CKGVLNT  377 (414)
Q Consensus       362 -~~L~~l~i~-~~~~~~~  377 (414)
                       ++|+.+++. ++..++.
T Consensus       566 ~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          566 PSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CTTCCEEECTTCCBCCSG
T ss_pred             hCcCCEEEeeCCCCcccC
Confidence             578899887 4445544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.51  E-value=9.9e-09  Score=87.13  Aligned_cols=134  Identities=16%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             cccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCC
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKA  228 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~  228 (414)
                      ...+|..+..+++|++|++++|.+...+....+++|+.|+++++.++  .+...+..+++|+.|++.+|.....-.+..+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l  114 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence            34455566667888888888877665445566778888888888774  2333344456677777766642211112223


Q ss_pred             CCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCC-ceEEeecCCCCccEEEeeecccchH---------HHHHHhhc
Q 015025          229 SKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARR-PRVVEVARSPHLKKLDLVSVYFADN---------EFNHLISK  298 (414)
Q Consensus       229 ~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~~~~~  298 (414)
                      ++|+.|+++++.                      ... +....+..+++|+.|+++++.+...         .....+..
T Consensus       115 ~~L~~L~l~~N~----------------------i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A          115 VNLRVLYMSNNK----------------------ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             HHSSEEEESEEE----------------------CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCCCEEECCCCc----------------------CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            444444444432                      111 0001234567777777776655332         22334566


Q ss_pred             CCCCcEEE
Q 015025          299 FPSLEDLF  306 (414)
Q Consensus       299 ~~~L~~L~  306 (414)
                      +|+|+.|+
T Consensus       173 l~~L~~Ld  180 (198)
T 1ds9_A          173 LPNLKKLD  180 (198)
T ss_dssp             CSSCSEEC
T ss_pred             CCCcEEEC
Confidence            77777776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.51  E-value=3.9e-08  Score=84.91  Aligned_cols=136  Identities=13%  Similarity=0.119  Sum_probs=73.7

Q ss_pred             ccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee-
Q 015025          148 TVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-  224 (414)
Q Consensus       148 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~-  224 (414)
                      ...++|..+.  ++|+.|+++++.+...+  .+..+++|+.|+|+++.++.. ....+.++++|+.|+|++|... .+. 
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~   97 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT-ELPK   97 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC-ccCH
Confidence            3445565443  57888888888765433  456677888888887766311 1122455677777777766532 211 


Q ss_pred             --ccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCC
Q 015025          225 --VSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSL  302 (414)
Q Consensus       225 --~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  302 (414)
                        +.++++|+.|+++++.  +..+                    .+..+..+++|+.|+++++.++... ...+..+++|
T Consensus        98 ~~f~~l~~L~~L~L~~N~--l~~~--------------------~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L  154 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNANK--INCL--------------------RVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAI  154 (220)
T ss_dssp             TTTTTCTTCCEEECCSSC--CCCC--------------------CTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTC
T ss_pred             hHccCCCCCCEEECCCCC--CCEe--------------------CHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCC
Confidence              2345566666666553  1111                    1112334556666666655544321 1223445666


Q ss_pred             cEEEecCc
Q 015025          303 EDLFVTRC  310 (414)
Q Consensus       303 ~~L~l~~c  310 (414)
                      +.|++.+|
T Consensus       155 ~~L~L~~N  162 (220)
T 2v9t_B          155 QTMHLAQN  162 (220)
T ss_dssp             CEEECCSS
T ss_pred             CEEEeCCC
Confidence            66666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.51  E-value=1e-07  Score=95.57  Aligned_cols=232  Identities=16%  Similarity=0.123  Sum_probs=111.0

Q ss_pred             cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025          159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  238 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~  238 (414)
                      ..+++.+.+.++.+..........+|+.|.+.++.+....    ...++.|+.+.+..+..........+++|+.|.++.
T Consensus       305 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~  380 (635)
T 4g8a_A          305 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR  380 (635)
T ss_dssp             GTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC----CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCS
T ss_pred             hcccccccccccccccccccccchhhhhhhcccccccCcC----cccchhhhhcccccccCCCCcccccccccccchhhc
Confidence            3445555555544333223344556666666666552111    113445555555544332222222456666666655


Q ss_pred             ccc-cceee---eecCCCeeEEEEEeeCCCCceEEe-------------------------ecCCCCccEEEeeecccch
Q 015025          239 FSE-EIEIV---EISVPSLQQLTLLFYGARRPRVVE-------------------------VARSPHLKKLDLVSVYFAD  289 (414)
Q Consensus       239 ~~~-~l~~~---~~~~p~L~~L~l~~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~~~~  289 (414)
                      +.- .....   ....++|+++.+..+.. ......                         +..+++++.++++.+.+..
T Consensus       381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~  459 (635)
T 4g8a_A          381 NGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  459 (635)
T ss_dssp             SCCBEEEECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred             cccccccccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence            430 00000   01234455544442111 001111                         2334455555554444322


Q ss_pred             HHHHHHhhcCCCCcEEEecCcccccc----ccccccccceEEeccCCCceeee----ccCCccceEEeeecccc----eE
Q 015025          290 NEFNHLISKFPSLEDLFVTRCCLPGK----IKISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPIP----II  357 (414)
Q Consensus       290 ~~~~~~~~~~~~L~~L~l~~c~~~~~----~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~~----~~  357 (414)
                      .. ...+..+++|+.|++.+|.....    .....++|+.|++++| .++.+.    -+.++|+.++++++.+.    ..
T Consensus       460 ~~-~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  537 (635)
T 4g8a_A          460 AF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  537 (635)
T ss_dssp             CC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred             cc-ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence            11 12345567777777777643332    2233567788888777 344443    23567788888777632    23


Q ss_pred             eeecCCccEEEEEEeeecchhHHHhHHHHhccC-cceeEEEEEEEE
Q 015025          358 SINVPCPWKVSFVCKGVLNTHWYLKLKKFLGVS-KQIESLKLSLYS  402 (414)
Q Consensus       358 ~~~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~-~~L~~L~i~~~~  402 (414)
                      ..++++|+.|+++.+.-.+     ..+..++++ ++|+.|+++.++
T Consensus       538 ~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          538 YKCLNSLQVLDYSLNHIMT-----SKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCB-----CCSSCTTCCCTTCCEEECTTCC
T ss_pred             HhCCCCCCEEECCCCcCCC-----CCHHHHHhhhCcCCEEEeeCCC
Confidence            4467788888876332100     012234455 578877776443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.47  E-value=1e-06  Score=81.65  Aligned_cols=205  Identities=15%  Similarity=0.071  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhhhcCCcccceEEEEEEecccC-CCh-hHHHHHHHHHH-hcCceeeEEEeeeCCCc--------cccCCc
Q 015025           86 FMDFVDASLVRFCKLKFCIQKFRLFLTFLDVK-GSA-PIVDRWIRLAV-ENGVRELDFENITDENT--------VYTLPQ  154 (414)
Q Consensus        86 ~~~~i~~~l~~~~~~~~~l~~l~l~~~~~~~~-~~~-~~~~~w~~~~~-~~~l~~L~~~l~~~~~~--------~~~l~~  154 (414)
                      +.+.+.++|..  .....++++.+..-.  +. ... ..+..++..+. .++|+.|.  +......        ...+..
T Consensus        93 ~~~~~~~fl~~--~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~--l~~~~~e~~~is~~~~~~L~~  166 (362)
T 2ra8_A           93 GVNLMDKILKD--KKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLF--WGDIDFEEQEISWIEQVDLSP  166 (362)
T ss_dssp             TCCHHHHHHHC--TTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEE--ECCCCTTTCCGGGCBCCBCHH
T ss_pred             HHHHHHHHhcC--CCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhhee--ecCcchhhcccccccccCHHH
Confidence            34455555521  223456666655321  22 111 23444443332 27899988  5321111        113444


Q ss_pred             cccccccccEEEEeccc-ccCCccccCCCCcceEEceeEEechHHHHHHHh-cCCcccEEEeeccCC--CceeeccCCCC
Q 015025          155 AIFSANSVTNLRLVWCR-LEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWG--LKHLCVSKASK  230 (414)
Q Consensus       155 ~l~~~~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~~p~Le~L~l~~~~~--~~~~~~~~~~~  230 (414)
                      .+..+++|+.|.++++. +..+.  ...++|++|++..+.++.+.+..+.. .+|+|+.|.|..+..  .....+.   .
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~---~  241 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN---V  241 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG---G
T ss_pred             HHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH---H
Confidence            55567889999998873 32222  24788999999888887777776653 689999988853211  0000000   0


Q ss_pred             CcEEEeeeccccceeee-ecCCCeeEEEEEeeCCCCc---eEEeecCCCCccEEEeeecccchHHHHHH---hhcCCCCc
Q 015025          231 LKIMEIRSFSEEIEIVE-ISVPSLQQLTLLFYGARRP---RVVEVARSPHLKKLDLVSVYFADNEFNHL---ISKFPSLE  303 (414)
Q Consensus       231 L~~L~i~~~~~~l~~~~-~~~p~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~  303 (414)
                      +..           .+. ..+|+|++|.+..|...+.   .....+.+|+|+.|+|+.+.+.+.....+   +.++++|+
T Consensus       242 l~~-----------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          242 FRP-----------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             TGG-----------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             HHH-----------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence            000           000 1245555555543222110   00111346788888888887777554333   34578888


Q ss_pred             EEEecCccc
Q 015025          304 DLFVTRCCL  312 (414)
Q Consensus       304 ~L~l~~c~~  312 (414)
                      .|+++.|..
T Consensus       311 ~L~L~~n~i  319 (362)
T 2ra8_A          311 FINMKYNYL  319 (362)
T ss_dssp             EEECCSBBC
T ss_pred             EEECCCCcC
Confidence            888887743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.44  E-value=1.3e-07  Score=93.21  Aligned_cols=161  Identities=16%  Similarity=0.077  Sum_probs=112.0

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      ++++.|+  +..+..  ..+|   ..+++|++|++++|.+...+.  -..+|++|+++++.++.  +..   .+++|+.|
T Consensus        80 ~~L~~L~--Ls~N~l--~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L  145 (571)
T 3cvr_A           80 PQITVLE--ITQNAL--ISLP---ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYI  145 (571)
T ss_dssp             TTCSEEE--CCSSCC--SCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred             CCCCEEE--CcCCCC--cccc---cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEE
Confidence            5799999  655433  3666   346899999999998876433  22399999999998843  222   68999999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCc-------cEEEeee
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL-------KKLDLVS  284 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~  284 (414)
                      ++++|... .+.. .+++|+.|++++|. ..+..  + .++|++|+++.+... .++. +..  +|       +.|++++
T Consensus       146 ~Ls~N~l~-~lp~-~l~~L~~L~Ls~N~L~~lp~--l-~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          146 NADNNQLT-MLPE-LPTSLEVLSVRNNQLTFLPE--L-PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             ECCSSCCS-CCCC-CCTTCCEEECCSSCCSCCCC--C-CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred             eCCCCccC-cCCC-cCCCcCEEECCCCCCCCcch--h-hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence            99988743 3333 46899999999986 23333  2 289999999965442 3333 322  66       9999999


Q ss_pred             cccchHHHHHHhhcCCCCcEEEecCccccccccc
Q 015025          285 VYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKI  318 (414)
Q Consensus       285 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~  318 (414)
                      |.++.  +...+..+++|+.|+|++|+....+..
T Consensus       217 N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          217 NRITH--IPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             SCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             Cccee--cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            98874  223345589999999999966554433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.43  E-value=1.6e-08  Score=94.58  Aligned_cols=40  Identities=23%  Similarity=0.183  Sum_probs=25.6

Q ss_pred             cCCCCccEEEeeecccchHHH---HHHhhcCCCCcEEEecCcc
Q 015025          272 ARSPHLKKLDLVSVYFADNEF---NHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~c~  311 (414)
                      ...++|+.|++++|.+++...   ...+...++|++|+|++|.
T Consensus       208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            345677777777777766433   3334456777777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.42  E-value=9e-08  Score=82.61  Aligned_cols=147  Identities=15%  Similarity=0.025  Sum_probs=90.0

Q ss_pred             cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeecc
Q 015025          163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS  240 (414)
Q Consensus       163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~  240 (414)
                      +.++++++.+...+ ..-.+.++.|+++++.++.......+.++++|+.|++.++......  .+.++++|+.|+++++.
T Consensus        14 ~~l~~s~n~l~~iP-~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIP-EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCc-cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            46777777665433 1223567888888877632211223466888888888877632211  24467788888888775


Q ss_pred             -cccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          241 -EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       241 -~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                       ..+.. ....+++|++|.++.+......+..+..+++|+.|+++++.++... ...+..+++|+.|++.+|+
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcC
Confidence             11111 1225678888888854443222334567788888888887765432 2335567888888888774

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.41  E-value=8e-08  Score=89.59  Aligned_cols=154  Identities=22%  Similarity=0.184  Sum_probs=96.2

Q ss_pred             cccCCccccccccccEEEEecccccCCc--ccc-CCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSI-MLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--  223 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--  223 (414)
                      -..+|..+.  +.++.|+|++|.+...+  .+. .+++|++|+|+++.++.-. ...+.++++|+.|+|++|.. ..+  
T Consensus        30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~  105 (361)
T 2xot_A           30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL-HTLDE  105 (361)
T ss_dssp             CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECT
T ss_pred             cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC-CcCCH
Confidence            345565443  35788888888765433  233 7888888888888773211 12245688888888888763 332  


Q ss_pred             -eccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEe-e---cCCCCccEEEeeecccchHHHHH
Q 015025          224 -CVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVE-V---ARSPHLKKLDLVSVYFADNEFNH  294 (414)
Q Consensus       224 -~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~~~~~~  294 (414)
                       .+.++++|+.|+++++.  +..+    ...+++|++|+++.+... .++.. +   ..+++|+.|+++++.++.-.. .
T Consensus       106 ~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~  181 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-T  181 (361)
T ss_dssp             TTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCH-H
T ss_pred             HHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCH-H
Confidence             23457888888888875  3322    225688888888854332 22211 1   457889999998887764322 2


Q ss_pred             HhhcCCC--CcEEEecCc
Q 015025          295 LISKFPS--LEDLFVTRC  310 (414)
Q Consensus       295 ~~~~~~~--L~~L~l~~c  310 (414)
                      .+..+++  ++.|++.+|
T Consensus       182 ~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          182 DLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             HHHHSCHHHHTTEECCSS
T ss_pred             HhhhccHhhcceEEecCC
Confidence            3445565  477888876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.39  E-value=7.9e-08  Score=82.98  Aligned_cols=145  Identities=10%  Similarity=-0.087  Sum_probs=81.9

Q ss_pred             cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEeeecc
Q 015025          163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS  240 (414)
Q Consensus       163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~  240 (414)
                      +.++.+++.+...+. .-.++|+.|+++++.++.- ....+.++++|+.|+|.+|.....  -.+.++++|+.|+++++.
T Consensus        14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456666665554331 1225788888877766311 111234566666666666543111  112234455555554442


Q ss_pred             ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc---cc
Q 015025          241 EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK---IK  317 (414)
Q Consensus       241 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~  317 (414)
                                            ...-....+..+++|+.|+++++.++... ...+..+++|+.|+|++|.....   ..
T Consensus        92 ----------------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           92 ----------------------ITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             ----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ----------------------CCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence                                  21111112457889999999998876532 23456789999999999843322   23


Q ss_pred             ccccccceEEeccCC
Q 015025          318 ISSNQLKNLLFRSCK  332 (414)
Q Consensus       318 ~~~~~L~~L~l~~c~  332 (414)
                      ..+++|+.|++.+.+
T Consensus       149 ~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             hCCCCCCEEEeCCCC
Confidence            346788888887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.38  E-value=1e-07  Score=82.84  Aligned_cols=144  Identities=13%  Similarity=0.033  Sum_probs=87.6

Q ss_pred             ccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee---ccCCCCCcEEEeee
Q 015025          162 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---VSKASKLKIMEIRS  238 (414)
Q Consensus       162 L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~---~~~~~~L~~L~i~~  238 (414)
                      -+.++.+++.+...+ ..-.++|++|+|+++.++.. ....+.++++|+.|+|.+|.. ..+.   +.++++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip-~~~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVP-AGIPTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccC-CCCCCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence            456676666655443 22347888888888877321 122345677788887777653 2221   22345555555554


Q ss_pred             ccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc---c
Q 015025          239 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG---K  315 (414)
Q Consensus       239 ~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~---~  315 (414)
                      +.                      ...-....+..+++|+.|+++++.++.  +...+..+++|+.|++++|....   .
T Consensus        98 N~----------------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           98 NQ----------------------LTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             SC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             Cc----------------------CCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHH
Confidence            42                      111111124578899999999988763  22335788999999999984322   2


Q ss_pred             ccccccccceEEeccCC
Q 015025          316 IKISSNQLKNLLFRSCK  332 (414)
Q Consensus       316 ~~~~~~~L~~L~l~~c~  332 (414)
                      ....+++|+.|++.+.+
T Consensus       154 ~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTTCTTCCEEECTTSC
T ss_pred             HHhCCCCCCEEEeeCCC
Confidence            23346788889887754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.37  E-value=6e-08  Score=80.53  Aligned_cols=130  Identities=13%  Similarity=-0.014  Sum_probs=61.0

Q ss_pred             cccccccEEEEecccccCCccccCC-CCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025          157 FSANSVTNLRLVWCRLEQPFDSIML-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  235 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  235 (414)
                      ..+.+|++|++++|.+...+....+ ++|+.|+++++.++.-   ..+..+++|+.|++++|.. ..+..          
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~----------   81 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGE----------   81 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECS----------
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCc----------
Confidence            4567778888877766543322222 3666666666554211   1223344444444444431 11110          


Q ss_pred             eeeccccceeeeecCCCeeEEEEEeeCCCCceEE--eecCCCCccEEEeeecccchH--HHHHHhhcCCCCcEEEecCc
Q 015025          236 IRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVV--EVARSPHLKKLDLVSVYFADN--EFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       236 i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~c  310 (414)
                               .+...+|+|++|+++.+.. ..++.  .+..+++|+.|+++++.++..  .....+..+|+|+.|++..+
T Consensus        82 ---------~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           82 ---------GLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             ---------CHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             ---------chhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence                     0001334444444442222 11111  234566677777766655431  11223556677777777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.36  E-value=3.6e-08  Score=83.63  Aligned_cols=83  Identities=16%  Similarity=0.200  Sum_probs=53.4

Q ss_pred             CCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEE
Q 015025          228 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  306 (414)
Q Consensus       228 ~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  306 (414)
                      +++|+.|++++|. ..+......+|+|++|+++.+.... ++ .+..+++|+.|+++++.++.......+..+++|++|+
T Consensus        69 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             HTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             CCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence            4455555555443 1111112234677778777554422 22 3567899999999999888644435678899999999


Q ss_pred             ecCccc
Q 015025          307 VTRCCL  312 (414)
Q Consensus       307 l~~c~~  312 (414)
                      +.+|+.
T Consensus       147 l~~N~l  152 (198)
T 1ds9_A          147 LAGNPL  152 (198)
T ss_dssp             ECSCHH
T ss_pred             ecCCcc
Confidence            999844

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.34  E-value=2.8e-07  Score=76.40  Aligned_cols=82  Identities=16%  Similarity=0.069  Sum_probs=48.9

Q ss_pred             cCCCeeEEEEEeeCCCCceEEe-ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccc--c----cccccc
Q 015025          249 SVPSLQQLTLLFYGARRPRVVE-VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPG--K----IKISSN  321 (414)
Q Consensus       249 ~~p~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~----~~~~~~  321 (414)
                      .+++|++|+++.+... .++.. +..+++|+.|+++++.+..-.....+..+++|+.|++.+|+...  .    ....++
T Consensus        62 ~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~  140 (176)
T 1a9n_A           62 LLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP  140 (176)
T ss_dssp             CCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC
Confidence            4556666666633321 22212 35788999999988887553222346678889999998874322  1    123356


Q ss_pred             ccceEEeccC
Q 015025          322 QLKNLLFRSC  331 (414)
Q Consensus       322 ~L~~L~l~~c  331 (414)
                      +|+.|+++.+
T Consensus       141 ~L~~Ld~~~n  150 (176)
T 1a9n_A          141 QVRVLDFQKV  150 (176)
T ss_dssp             TCSEETTEEC
T ss_pred             ccceeCCCcC
Confidence            6666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.34  E-value=8.2e-09  Score=101.96  Aligned_cols=170  Identities=12%  Similarity=0.057  Sum_probs=96.0

Q ss_pred             cccccccEEEEecccccCCc-cccCCCCcceEEceeEEe------------chHHHHHHHhcCCcccEEE-eeccCC--C
Q 015025          157 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL------------DEQMVQKLASECPLLEDLC-FSNCWG--L  220 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~------------~~~~l~~ll~~~p~Le~L~-l~~~~~--~  220 (414)
                      ..++.|+.|+++++.+...+ ....|++|+.|+++++..            ........+.++++|+.|+ +..+..  +
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45778888888887765433 456677777777755431            1122334455566666665 222210  0


Q ss_pred             ceee-----cc--CCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHH
Q 015025          221 KHLC-----VS--KASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  292 (414)
Q Consensus       221 ~~~~-----~~--~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (414)
                      ..+.     +.  ....|+.|+++++. ..++. ...+++|+.|+++.+... .++..++.+++|+.|+++++.++.-  
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l--  501 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC--
Confidence            0000     00  01357777777665 22222 235667777777744332 4444566777777777777776652  


Q ss_pred             HHHhhcCCCCcEEEecCccccc----cccccccccceEEeccC
Q 015025          293 NHLISKFPSLEDLFVTRCCLPG----KIKISSNQLKNLLFRSC  331 (414)
Q Consensus       293 ~~~~~~~~~L~~L~l~~c~~~~----~~~~~~~~L~~L~l~~c  331 (414)
                      . .+..+++|+.|+|++|....    .....+++|+.|+++++
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            2 45667777777777763222    22234567777777765

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.26  E-value=3.6e-07  Score=80.97  Aligned_cols=36  Identities=22%  Similarity=0.552  Sum_probs=34.1

Q ss_pred             cccCCCChHHHHHHhcCCChhhHH-hhhccccchhhh
Q 015025            9 DRISELPTFIIHHLMSYLSAKEVA-RTSVLSKKWNQL   44 (414)
Q Consensus         9 d~i~~LPdevL~~I~s~L~~~~~~-~~~~vskrWr~l   44 (414)
                      ..+..||+|++.+||+|||.++++ ++++|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            578899999999999999999999 999999999976

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.24  E-value=1.6e-07  Score=87.62  Aligned_cols=163  Identities=15%  Similarity=0.077  Sum_probs=105.8

Q ss_pred             cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHh-cCCcccEEEeeccCCCcee---eccCCCCCcEEEeee
Q 015025          163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLAS-ECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRS  238 (414)
Q Consensus       163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~~p~Le~L~l~~~~~~~~~---~~~~~~~L~~L~i~~  238 (414)
                      +.++.+++.+...+ ..-.+.++.|+|+++.++.-.. ..+. ++++|+.|+|.+|.. ..+   .+.++++|+.|++++
T Consensus        21 ~~l~c~~~~l~~iP-~~~~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVP-QSLPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCC-SSCCTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccC-ccCCCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCC
Confidence            56777777766543 2234569999999998842221 1233 789999999998864 333   245689999999998


Q ss_pred             ccccceeee----ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHh---hcCCCCcEEEecCcc
Q 015025          239 FSEEIEIVE----ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLI---SKFPSLEDLFVTRCC  311 (414)
Q Consensus       239 ~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~  311 (414)
                      +.  +..+.    ..+++|++|+++.+.........+..+++|+.|+++++.++.-.. ..+   ..+++|+.|+|++|.
T Consensus        98 N~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           98 NH--LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSC
T ss_pred             Cc--CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCC
Confidence            85  43332    367899999999544322112346688999999999998765221 122   568999999999884


Q ss_pred             ccccc---cccccc--cceEEeccC
Q 015025          312 LPGKI---KISSNQ--LKNLLFRSC  331 (414)
Q Consensus       312 ~~~~~---~~~~~~--L~~L~l~~c  331 (414)
                      ...--   ....+.  ++.|++.+.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCccCHHHhhhccHhhcceEEecCC
Confidence            32211   112233  366777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=1.3e-06  Score=71.50  Aligned_cols=85  Identities=13%  Similarity=0.053  Sum_probs=48.3

Q ss_pred             CeeEEEEEeeCCCCceEEeecCCCCccEEEeeecc-cchHHHHHHhhc---CCCCcEEEecCcccccccc----cccccc
Q 015025          252 SLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVY-FADNEFNHLISK---FPSLEDLFVTRCCLPGKIK----ISSNQL  323 (414)
Q Consensus       252 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~c~~~~~~~----~~~~~L  323 (414)
                      +|++|++++|...+.....+.+|++|++|+|+++. +++..+..+...   +++|++|+|++|+.++.-+    ..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555433222222224567777777777664 666665554432   3567777777776554422    236677


Q ss_pred             ceEEeccCCCcee
Q 015025          324 KNLLFRSCKYLKV  336 (414)
Q Consensus       324 ~~L~l~~c~~L~~  336 (414)
                      +.|++++|+.+..
T Consensus       142 ~~L~L~~c~~Itd  154 (176)
T 3e4g_A          142 KYLFLSDLPGVKE  154 (176)
T ss_dssp             CEEEEESCTTCCC
T ss_pred             CEEECCCCCCCCc
Confidence            7777777766543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.17  E-value=3.3e-07  Score=80.21  Aligned_cols=34  Identities=21%  Similarity=0.496  Sum_probs=32.4

Q ss_pred             ccCCCChHHHHHHhcCCChhhHHhhhccccchhh
Q 015025           10 RISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQ   43 (414)
Q Consensus        10 ~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~   43 (414)
                      .|++||+||+.+|||||+.+|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999995

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.16  E-value=1.4e-07  Score=88.05  Aligned_cols=166  Identities=17%  Similarity=0.136  Sum_probs=105.1

Q ss_pred             HHHHhcCceeeEEEeeeCCCcc---ccCCccccc-cccccEEEEecccccCCc---cccCCCCcceEEceeEEechHHHH
Q 015025          128 RLAVENGVRELDFENITDENTV---YTLPQAIFS-ANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCLDEQMVQ  200 (414)
Q Consensus       128 ~~~~~~~l~~L~~~l~~~~~~~---~~l~~~l~~-~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~~~~~l~  200 (414)
                      ...+.+.+++|+  +..+....   ..+...+.. +++|++|+|++|.+....   ....+++|++|+|++|.+++....
T Consensus        67 ~~~~~~~L~~L~--Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           67 SAEVLSSLRQLN--LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HHHHHTTCCEEE--CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred             HHHHHhhCCEEE--ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence            334446888888  65443322   223333332 368999999998775432   334567899999999988665555


Q ss_pred             HHH----hcCCcccEEEeeccCCCc----ee--eccCCCCCcEEEeeecc---ccc---eeeeecCCCeeEEEEEeeCCC
Q 015025          201 KLA----SECPLLEDLCFSNCWGLK----HL--CVSKASKLKIMEIRSFS---EEI---EIVEISVPSLQQLTLLFYGAR  264 (414)
Q Consensus       201 ~ll----~~~p~Le~L~l~~~~~~~----~~--~~~~~~~L~~L~i~~~~---~~l---~~~~~~~p~L~~L~l~~~~~~  264 (414)
                      .+.    ..++.|++|+|.+|....    .+  .+..+++|+.|++++|.   ...   .......++|++|++++|...
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            443    357889999999886421    11  11346889999999886   111   111234678999999965442


Q ss_pred             Cc----eEEeecCCCCccEEEeeecccchHHHHHH
Q 015025          265 RP----RVVEVARSPHLKKLDLVSVYFADNEFNHL  295 (414)
Q Consensus       265 ~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  295 (414)
                      +.    +...+...++|+.|++++|.+++.....+
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            21    11123456899999999999988766544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.09  E-value=1.3e-06  Score=86.27  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=35.1

Q ss_pred             CcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeecc
Q 015025          183 SLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS  240 (414)
Q Consensus       183 ~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~  240 (414)
                      .|+.|+|+++.++.  ++. +.++++|+.|++++|... .+  .+.++++|+.|+++++.
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  497 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA  497 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence            57888888877742  233 667888888888877532 22  23356677777776664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.04  E-value=1.1e-06  Score=74.02  Aligned_cols=43  Identities=30%  Similarity=0.106  Sum_probs=21.7

Q ss_pred             ccCCccccccccccEEEEecccccCCc---cccCCCCcceEEceeEEe
Q 015025          150 YTLPQAIFSANSVTNLRLVWCRLEQPF---DSIMLCSLKKLTLERVCL  194 (414)
Q Consensus       150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~L~~~~~  194 (414)
                      .++|..+..  +|++|+++++.+...+   .+..+++|++|+|+++.+
T Consensus        21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l   66 (192)
T 1w8a_A           21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL   66 (192)
T ss_dssp             SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC
T ss_pred             CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC
Confidence            444543332  5666666666554332   134455555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=3.3e-06  Score=77.46  Aligned_cols=113  Identities=14%  Similarity=0.123  Sum_probs=61.6

Q ss_pred             CCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc----cccccccceEEeccCCCceeeec----cCCccc
Q 015025          274 SPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI----KISSNQLKNLLFRSCKYLKVIDV----DAPNLL  345 (414)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L~l~~c~~L~~l~i----~~~~L~  345 (414)
                      ..+++.+.+.+. +.......+...+++|+.+++.++. +..+    ...+.+|+.+++.+  +++.+.-    ++.+|+
T Consensus       201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCC
T ss_pred             ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhcc
Confidence            345556666554 2233334444457788888887652 2222    22356777777654  2554442    355666


Q ss_pred             -eEEeeecc--cc-eEeeecCCccEEEEEE-ee-ecchhHHHhHHHHhccCcceeEEE
Q 015025          346 -LFTYEFNP--IP-IISINVPCPWKVSFVC-KG-VLNTHWYLKLKKFLGVSKQIESLK  397 (414)
Q Consensus       346 -~l~~~~~~--~~-~~~~~~~~L~~l~i~~-~~-~~~~~~~~~l~~~l~~~~~L~~L~  397 (414)
                       .+.+.+.-  ++ ....++++|+.+.+.. .. ...       ...+.++++|+++.
T Consensus       277 ~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-------~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          277 GTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLG-------DELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEEC-------TTTTCTTCCCCEEE
T ss_pred             EEEEEcccceEEchhhhhCCccCCEEEeCCCccCccc-------hhhhcCCcchhhhc
Confidence             66665521  11 2334678888888742 11 111       24577888888764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.91  E-value=2.4e-06  Score=82.09  Aligned_cols=39  Identities=26%  Similarity=0.497  Sum_probs=36.3

Q ss_pred             cccccCCCChHHHHHHhcCCChhhHHhhhccccchhhhh
Q 015025            7 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   45 (414)
Q Consensus         7 ~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw   45 (414)
                      ..|.|+.||+|++.+||+|||.++++++++|||+|+++.
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.88  E-value=4.6e-06  Score=68.99  Aligned_cols=35  Identities=29%  Similarity=0.187  Sum_probs=16.2

Q ss_pred             ccccEEEEecccccCCc--cccCCCCcceEEceeEEe
Q 015025          160 NSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL  194 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~  194 (414)
                      ++|++|+++++.+...+  ....+++|++|+++++.+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   64 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI   64 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc
Confidence            35555555555543322  123444455555444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.88  E-value=6.7e-06  Score=69.07  Aligned_cols=124  Identities=16%  Similarity=0.037  Sum_probs=85.1

Q ss_pred             cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEeeecc
Q 015025          163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS  240 (414)
Q Consensus       163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~  240 (414)
                      +.++++++.+...+ ..-.++|++|+++++.++.......+.++++|++|++.++.....  -.+.++++|+.|+++++.
T Consensus        11 ~~l~~s~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP-RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCC-SCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCc-cCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            67888887775543 222348999999999874222222356789999999998864322  234567899999999885


Q ss_pred             ccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccch
Q 015025          241 EEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  289 (414)
Q Consensus       241 ~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  289 (414)
                        +..+    ...+++|++|+++.+......+..+..+++|+.|+++++.+..
T Consensus        90 --l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           90 --IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             --CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             --CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence              3322    2257899999999554433223346678999999999887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.83  E-value=6.3e-06  Score=69.31  Aligned_cols=34  Identities=18%  Similarity=0.025  Sum_probs=14.8

Q ss_pred             cccEEEEecccccCCc-cccCCCCcceEEceeEEe
Q 015025          161 SVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL  194 (414)
Q Consensus       161 ~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~  194 (414)
                      +|++|+++++.+...+ .+..+++|+.|+|+++.+
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i   66 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI   66 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC
Confidence            4555555555443322 233344444444444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.82  E-value=1.2e-05  Score=66.50  Aligned_cols=126  Identities=18%  Similarity=0.068  Sum_probs=79.1

Q ss_pred             ccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeec
Q 015025          162 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSF  239 (414)
Q Consensus       162 L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~  239 (414)
                      .+.++++++.+...+ ....++|++|+++++.++. .....+.++++|++|++.++......  .+..+++|+.|+++++
T Consensus         9 ~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            456677666655443 2334788999998887732 12223467888999999887542211  1345788999998887


Q ss_pred             c-cccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccch
Q 015025          240 S-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  289 (414)
Q Consensus       240 ~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  289 (414)
                      . ..+.. ....+++|++|+++.+....-....+..+++|+.|+++++.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            5 11111 11356889999988544322111124568899999999887754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.78  E-value=2e-05  Score=66.15  Aligned_cols=101  Identities=16%  Similarity=0.014  Sum_probs=66.6

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCccc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLE  210 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le  210 (414)
                      +++++|+  +..+.  ...+|..+..+++|++|++++|.+....  .+.++++|++|+|+++.++.-. ...+.++++|+
T Consensus        31 ~~l~~L~--L~~n~--i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELY--LDGNQ--FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLR  105 (193)
T ss_dssp             TTCCEEE--CCSSC--CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCC
T ss_pred             CCCCEEE--CCCCc--CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCC
Confidence            4788888  65433  3467777778999999999999877544  4678889999999888773211 11245677778


Q ss_pred             EEEeeccCCCceee---ccCCCCCcEEEeeec
Q 015025          211 DLCFSNCWGLKHLC---VSKASKLKIMEIRSF  239 (414)
Q Consensus       211 ~L~l~~~~~~~~~~---~~~~~~L~~L~i~~~  239 (414)
                      .|+|.+|... .+.   +..+++|+.|++.++
T Consensus       106 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             EEECCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence            8877776532 211   223455555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.73  E-value=6.2e-06  Score=83.98  Aligned_cols=108  Identities=11%  Similarity=-0.003  Sum_probs=56.2

Q ss_pred             ccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeecc-ccceeeeecCCCee
Q 015025          178 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQ  254 (414)
Q Consensus       178 ~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~  254 (414)
                      ...+++|+.|+|+++.+.  .+..-+.+++.|+.|+|.+|... .+  .+.++++|+.|++++|. ..+......+++|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            344555555555555542  11111234566666666555432 21  12345666666666554 11111122456677


Q ss_pred             EEEEEeeCCCCceEEeecCCCCccEEEeeecccch
Q 015025          255 QLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFAD  289 (414)
Q Consensus       255 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  289 (414)
                      +|.++.+.. ..++..++.+++|+.|+|++|.++.
T Consensus       297 ~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             EEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             EEECCCCCC-CccChhhhcCCCccEEeCCCCccCC
Confidence            777764433 2344456778888888888887764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.70  E-value=1.6e-05  Score=75.98  Aligned_cols=37  Identities=24%  Similarity=0.409  Sum_probs=35.5

Q ss_pred             cccccCCCChHHHHHHhcCCChhhHHhhhccccchhh
Q 015025            7 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQ   43 (414)
Q Consensus         7 ~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~   43 (414)
                      ..|.++.||+|++.+||+||+.+++++++.|||+|+.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~   51 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI   51 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence            5799999999999999999999999999999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.67  E-value=8.1e-06  Score=77.81  Aligned_cols=37  Identities=32%  Similarity=0.628  Sum_probs=35.2

Q ss_pred             cccccCCCChH----HHHHHhcCCChhhHHhhhccccchhh
Q 015025            7 AMDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQ   43 (414)
Q Consensus         7 ~~d~i~~LPde----vL~~I~s~L~~~~~~~~~~vskrWr~   43 (414)
                      ..|.|+.||+|    ++.+||+||+.++++++++|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            57999999999    99999999999999999999999994

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.65  E-value=8.1e-06  Score=83.10  Aligned_cols=110  Identities=16%  Similarity=0.066  Sum_probs=77.8

Q ss_pred             HHHHhcCCcccEEEeeccCCCcee--eccCCCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCC
Q 015025          200 QKLASECPLLEDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPH  276 (414)
Q Consensus       200 ~~ll~~~p~Le~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~  276 (414)
                      ...+..++.|+.|+|.+|... .+  .+.++++|+.|++++|. ..+......+++|++|+++.+... .++..++.+++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence            444677899999999988753 22  23357899999999886 222221236899999999965543 55666788999


Q ss_pred             ccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccc
Q 015025          277 LKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP  313 (414)
Q Consensus       277 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  313 (414)
                      |+.|+|+++.++.  +...+..+++|+.|+|++|...
T Consensus       295 L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          295 LKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccC
Confidence            9999999988753  2223677899999999998543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=5.1e-05  Score=69.45  Aligned_cols=77  Identities=12%  Similarity=0.026  Sum_probs=41.3

Q ss_pred             CCCCcEEEeeeccccceeee----ecCCCeeEEEEEeeCCCCceE-EeecCCCCcc-EEEeeecccchHHHHHHhhcCCC
Q 015025          228 ASKLKIMEIRSFSEEIEIVE----ISVPSLQQLTLLFYGARRPRV-VEVARSPHLK-KLDLVSVYFADNEFNHLISKFPS  301 (414)
Q Consensus       228 ~~~L~~L~i~~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~  301 (414)
                      |++|+.+++..+.  +..+.    ..+++|+++.+..+  ...+. ..+.+|++|+ .+.+.. .++.- -...+.+|++
T Consensus       225 ~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTN--ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAI-EFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBC--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEE-CTTTTTTCTT
T ss_pred             cCCCeEEECCCCC--cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEE-chhhhhCCcc
Confidence            5677777776552  22322    25667777776621  11111 1245677777 777765 22211 1123566778


Q ss_pred             CcEEEecCc
Q 015025          302 LEDLFVTRC  310 (414)
Q Consensus       302 L~~L~l~~c  310 (414)
                      |+.+.+..+
T Consensus       299 L~~l~l~~n  307 (329)
T 3sb4_A          299 LRYVLATGD  307 (329)
T ss_dssp             EEEEEECSS
T ss_pred             CCEEEeCCC
Confidence            888887543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.63  E-value=9.7e-05  Score=69.53  Aligned_cols=190  Identities=13%  Similarity=0.080  Sum_probs=94.6

Q ss_pred             CCccccccccccEEEEecccccCC-ccccCCCCcceEEceeEEe---chHHHHHHHhcCCcccEEEeecc-CCCceeecc
Q 015025          152 LPQAIFSANSVTNLRLVWCRLEQP-FDSIMLCSLKKLTLERVCL---DEQMVQKLASECPLLEDLCFSNC-WGLKHLCVS  226 (414)
Q Consensus       152 l~~~l~~~~~L~~L~l~~~~l~~~-~~~~~l~~L~~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~~-~~~~~~~~~  226 (414)
                      ++...|.-.+|+.+.+.+..-... ..+.+|++|+.+++..+.+   ....+     .|..|+++.+... ..+..-.+.
T Consensus       149 I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~l~~I~~~aF~  223 (401)
T 4fdw_A          149 IGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVTLKEIGSQAFL  223 (401)
T ss_dssp             ECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTTCCEECTTTTT
T ss_pred             ECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCchheehhhHhh
Confidence            333333323466666554211111 1355666777777765433   22222     2566777766532 112222334


Q ss_pred             CCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCce-EEeecCCCCccEEEeeecccch----HHHHHHhhcCCC
Q 015025          227 KASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPR-VVEVARSPHLKKLDLVSVYFAD----NEFNHLISKFPS  301 (414)
Q Consensus       227 ~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~  301 (414)
                      +|++|+.+.+......+..-.....+|+.+.+.  .....+ ...+..|++|+.+.+.++....    ......+..|++
T Consensus       224 ~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp--~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~  301 (401)
T 4fdw_A          224 KTSQLKTIEIPENVSTIGQEAFRESGITTVKLP--NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK  301 (401)
T ss_dssp             TCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE--TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred             CCCCCCEEecCCCccCccccccccCCccEEEeC--CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence            567777777764321111111222567777775  211111 1124578888888887654320    011234567888


Q ss_pred             CcEEEecCcccccccc----ccccccceEEeccCCCceeee----ccCCccceEEeeecc
Q 015025          302 LEDLFVTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNP  353 (414)
Q Consensus       302 L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~  353 (414)
                      |+.+.+...  +..+.    ..+.+|+.+.+..  +++.+.    -++ +|+.+.+.++.
T Consensus       302 L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          302 LARFEIPES--IRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             CCEECCCTT--CCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred             CCeEEeCCc--eEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence            888888742  33332    2346677776632  344443    235 67777777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.54  E-value=4.1e-05  Score=63.75  Aligned_cols=39  Identities=15%  Similarity=0.134  Sum_probs=26.4

Q ss_pred             cCCCCccEEEe--eecccchHH---HHHHhhcCCCCcEEEecCc
Q 015025          272 ARSPHLKKLDL--VSVYFADNE---FNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       272 ~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~c  310 (414)
                      ...++|++|++  .++.+.+..   +...+...++|++|++++|
T Consensus       118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            44567778888  667776654   4445556677888888776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.51  E-value=7.5e-05  Score=61.22  Aligned_cols=89  Identities=13%  Similarity=0.042  Sum_probs=49.9

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--ee
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LC  224 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~  224 (414)
                      ...+|..+.  ++|++|++++|.+....  .+..+++|++|+|+++.++. .....+.++++|+.|+|+++.....  -.
T Consensus        21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~   97 (170)
T 3g39_A           21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGA   97 (170)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHHH
Confidence            345555443  67788888887765542  35667777777777776631 1112234566777777766643211  11


Q ss_pred             ccCCCCCcEEEeeecc
Q 015025          225 VSKASKLKIMEIRSFS  240 (414)
Q Consensus       225 ~~~~~~L~~L~i~~~~  240 (414)
                      +..+++|+.|+++++.
T Consensus        98 ~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           98 FDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEEeCCCC
Confidence            2244556666555543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.46  E-value=9.5e-05  Score=60.85  Aligned_cols=88  Identities=13%  Similarity=0.033  Sum_probs=48.3

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--ee
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LC  224 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~  224 (414)
                      ...+|..+.  ++|++|++++|.+....  .+..+++|+.|+|+++.++. .....+.++++|+.|+|.+|.....  -.
T Consensus        24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~l~~l~~~~  100 (174)
T 2r9u_A           24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGA  100 (174)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCccceeCHHH
Confidence            345565443  67788888887765542  35567777777777776631 1111234566666766666542111  01


Q ss_pred             ccCCCCCcEEEeeec
Q 015025          225 VSKASKLKIMEIRSF  239 (414)
Q Consensus       225 ~~~~~~L~~L~i~~~  239 (414)
                      +..+++|+.|++.++
T Consensus       101 ~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTTCTTCSEEECCSS
T ss_pred             hccccCCCEEEeCCC
Confidence            223455555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.10  E-value=0.00013  Score=60.67  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=19.0

Q ss_pred             CCCcceEEceeEEechHHH---HHHHhcCCcccEEEeeccC
Q 015025          181 LCSLKKLTLERVCLDEQMV---QKLASECPLLEDLCFSNCW  218 (414)
Q Consensus       181 l~~L~~L~L~~~~~~~~~l---~~ll~~~p~Le~L~l~~~~  218 (414)
                      .++|++|+|+++.++++..   ...+...+.|++|+|.+|.
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3455555555555543332   2223445556666665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.94  E-value=0.00041  Score=65.11  Aligned_cols=153  Identities=14%  Similarity=0.023  Sum_probs=73.4

Q ss_pred             CCCCcEEEeeecccccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEE
Q 015025          228 ASKLKIMEIRSFSEEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  306 (414)
Q Consensus       228 ~~~L~~L~i~~~~~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  306 (414)
                      +.+|+.+.+......+.. ....+.+|+.+.+... ...-....+..++.++.+......+.+.    .+..+.+|+.+.
T Consensus       229 ~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~  303 (394)
T 4fs7_A          229 KTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVK  303 (394)
T ss_dssp             TCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEE
T ss_pred             cCCCceEEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeeccc----cccccccccccc
Confidence            355666655432211111 1124556666666521 1000111234556666666554433322    245567777777


Q ss_pred             ecCcccccccc----ccccccceEEeccCCCceeee----ccCCccceEEeeecc--cc-eEeeecCCccEEEEEEeeec
Q 015025          307 VTRCCLPGKIK----ISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNP--IP-IISINVPCPWKVSFVCKGVL  375 (414)
Q Consensus       307 l~~c~~~~~~~----~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~--~~-~~~~~~~~L~~l~i~~~~~~  375 (414)
                      +...  +..++    ..+.+|+.+.+.  .+++.+.    -+|.+|+++.+...-  +. ....++++|+++.+..  + 
T Consensus       304 l~~~--i~~I~~~aF~~c~~L~~i~lp--~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~--~-  376 (394)
T 4fs7_A          304 LLDS--VKFIGEEAFESCTSLVSIDLP--YLVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK--R-  376 (394)
T ss_dssp             ECTT--CCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG--G-
T ss_pred             cccc--cceechhhhcCCCCCCEEEeC--CcccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC--C-
Confidence            7542  22222    224556666553  2233332    124555555553321  11 2234678999988731  2 


Q ss_pred             chhHHHhHHHHhccCcceeEE
Q 015025          376 NTHWYLKLKKFLGVSKQIESL  396 (414)
Q Consensus       376 ~~~~~~~l~~~l~~~~~L~~L  396 (414)
                          ++.+.+.+.+|++|+..
T Consensus       377 ----~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          377 ----LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             ----GGGGGGGBCTTCEEEEE
T ss_pred             ----CEEhhheecCCCCCcEE
Confidence                23344568888988865

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.82  E-value=0.00051  Score=56.12  Aligned_cols=38  Identities=13%  Similarity=0.197  Sum_probs=19.6

Q ss_pred             cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ..+++|+.|+++++.++.-. ...+..+++|+.|+|.+|
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCC
Confidence            44556666666655554311 122345566666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.66  E-value=0.0012  Score=61.91  Aligned_cols=180  Identities=11%  Similarity=0.105  Sum_probs=106.4

Q ss_pred             CceeeEEEeeeCCCccccCCcccc-ccccccEEEEecccccCCc-cccCCCCcceEEceeE--EechHHHHHHHhcCCcc
Q 015025          134 GVRELDFENITDENTVYTLPQAIF-SANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERV--CLDEQMVQKLASECPLL  209 (414)
Q Consensus       134 ~l~~L~~~l~~~~~~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~~p~L  209 (414)
                      +++++.  +.   .....++...+ .|++|+.+.+.++.+...+ ..-.+.+|+.+.+...  .+....    ..+|++|
T Consensus       158 ~L~~i~--lp---~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L  228 (401)
T 4fdw_A          158 TVQEIV--FP---STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQA----FLKTSQL  228 (401)
T ss_dssp             CCCEEE--CC---TTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTC
T ss_pred             CceEEE--eC---CCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhH----hhCCCCC
Confidence            566665  32   13344554444 4999999999987654432 2223688999998643  123222    4579999


Q ss_pred             cEEEeeccC-CCceeeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCC-C----ceEEeecCCCCccE
Q 015025          210 EDLCFSNCW-GLKHLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGAR-R----PRVVEVARSPHLKK  279 (414)
Q Consensus       210 e~L~l~~~~-~~~~~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~-~----~~~~~~~~~~~L~~  279 (414)
                      +++.+...- .+..-.+.+ .+|+.+.+...   +..+    ...|++|+.+.+..+... .    -....+.+|++|+.
T Consensus       229 ~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          229 KTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             CCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred             CEEecCCCccCcccccccc-CCccEEEeCCC---ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence            999997531 122223334 68999988533   3333    237899999999732211 0    01113567899999


Q ss_pred             EEeeecccchHHHHHHhhcCCCCcEEEecCcccccccc----ccccccceEEeccC
Q 015025          280 LDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK----ISSNQLKNLLFRSC  331 (414)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~----~~~~~L~~L~l~~c  331 (414)
                      +.+... +.. .-...+.+|++|+.+.|..+  +..+.    ..+ +|+.+.+.+.
T Consensus       305 l~l~~~-i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          305 FEIPES-IRI-LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             ECCCTT-CCE-ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred             EEeCCc-eEE-EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence            999742 221 11234577899999999653  33222    223 5666665443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.65  E-value=0.001  Score=61.14  Aligned_cols=89  Identities=20%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             ccccCCccccccccccEEEEec-ccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee
Q 015025          148 TVYTLPQAIFSANSVTNLRLVW-CRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC  224 (414)
Q Consensus       148 ~~~~l~~~l~~~~~L~~L~l~~-~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~  224 (414)
                      .-..+|. +..+++|++|+|++ |.+...+  .+..+++|+.|+|+++.++. .....+.++++|+.|+|++|.. ..+.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-ESLS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCC-SCCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcc-ceeC
Confidence            3456787 77788899999986 7765443  46788899999998887732 1222356788999999988764 2222


Q ss_pred             ---ccCCCCCcEEEeeecc
Q 015025          225 ---VSKASKLKIMEIRSFS  240 (414)
Q Consensus       225 ---~~~~~~L~~L~i~~~~  240 (414)
                         +.. ..|+.|++.++.
T Consensus        97 ~~~~~~-~~L~~l~l~~N~  114 (347)
T 2ifg_A           97 WKTVQG-LSLQELVLSGNP  114 (347)
T ss_dssp             STTTCS-CCCCEEECCSSC
T ss_pred             HHHccc-CCceEEEeeCCC
Confidence               122 238888887664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.62  E-value=0.00094  Score=54.77  Aligned_cols=82  Identities=15%  Similarity=0.027  Sum_probs=60.1

Q ss_pred             cCceeeEEEeeeCCCccccC-CccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTL-PQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      .++++|+  +..+.  ...+ |..+..+++|++|+|++|.+...+  .+..+++|++|+|+++.++. .....+..+++|
T Consensus        33 ~~L~~L~--Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLW--LNNNQ--ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEE--CCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEE--eCCCC--ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence            5788888  65432  2334 455667899999999999887654  34689999999999998842 112335678999


Q ss_pred             cEEEeeccCC
Q 015025          210 EDLCFSNCWG  219 (414)
Q Consensus       210 e~L~l~~~~~  219 (414)
                      +.|.+.+++.
T Consensus       108 ~~L~L~~N~~  117 (174)
T 2r9u_A          108 THIYLYNNPW  117 (174)
T ss_dssp             SEEECCSSCB
T ss_pred             CEEEeCCCCc
Confidence            9999998863

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.54  E-value=0.0023  Score=56.21  Aligned_cols=64  Identities=25%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             cCCCeeEEEEEeeCCCC--ceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccc
Q 015025          249 SVPSLQQLTLLFYGARR--PRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLP  313 (414)
Q Consensus       249 ~~p~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  313 (414)
                      .+|+|++|.++.+....  .++..+..+++|+.|+|++|.+.+..-...+..+ +|++|.|.+|+..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            35555555555332211  1112223567777777776666543211222223 6777777776543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.52  E-value=0.012  Score=51.63  Aligned_cols=15  Identities=33%  Similarity=0.153  Sum_probs=7.2

Q ss_pred             CCCCcceEEceeEEe
Q 015025          180 MLCSLKKLTLERVCL  194 (414)
Q Consensus       180 ~l~~L~~L~L~~~~~  194 (414)
                      .+++|+.|+|+++.+
T Consensus       194 ~l~~L~~L~Ls~N~i  208 (267)
T 3rw6_A          194 KAPNLKILNLSGNEL  208 (267)
T ss_dssp             HSTTCCEEECTTSCC
T ss_pred             hCCCCCEEECCCCcc
Confidence            344444444444444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.43  E-value=0.017  Score=53.90  Aligned_cols=22  Identities=14%  Similarity=0.167  Sum_probs=13.6

Q ss_pred             cccCCcccc-ccccccEEEEecc
Q 015025          149 VYTLPQAIF-SANSVTNLRLVWC  170 (414)
Q Consensus       149 ~~~l~~~l~-~~~~L~~L~l~~~  170 (414)
                      ...+....| .|.+|+.+.+..+
T Consensus        75 vt~Ig~~AF~~C~~L~~i~~~~n   97 (394)
T 4gt6_A           75 VTEIGSNAFYNCTSLKRVTIQDN   97 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEEGGG
T ss_pred             eeEEhHHHhhCCccCceEeecCC
Confidence            344544444 3788888887654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.95  E-value=0.014  Score=53.33  Aligned_cols=74  Identities=14%  Similarity=0.060  Sum_probs=38.5

Q ss_pred             EEEecc-cccCCccccCCCCcceEEcee-EEechHHHHHHHhcCCcccEEEeeccCCCcee---eccCCCCCcEEEeeec
Q 015025          165 LRLVWC-RLEQPFDSIMLCSLKKLTLER-VCLDEQMVQKLASECPLLEDLCFSNCWGLKHL---CVSKASKLKIMEIRSF  239 (414)
Q Consensus       165 L~l~~~-~l~~~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~---~~~~~~~L~~L~i~~~  239 (414)
                      ++.++. .+...+....+++|+.|+|++ +.++. .....+.++++|+.|+|++|.. ..+   .+.++++|+.|+++++
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCCcc-ceeCHHHhcCCcCCCEEeCCCC
Confidence            455554 444333345566677777774 55521 1112244567777777766642 222   1234566666666655


Q ss_pred             c
Q 015025          240 S  240 (414)
Q Consensus       240 ~  240 (414)
                      .
T Consensus        91 ~   91 (347)
T 2ifg_A           91 A   91 (347)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.74  E-value=0.011  Score=55.18  Aligned_cols=117  Identities=10%  Similarity=0.115  Sum_probs=61.2

Q ss_pred             cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccccccccccceEEeccCCCceeee----ccCCccceE
Q 015025          272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIKISSNQLKNLLFRSCKYLKVID----VDAPNLLLF  347 (414)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l  347 (414)
                      ..+..|+.+.+..+...-.  ...+..++.++.+..............+.+|+.+.+..  +++.+.    -++.+|+++
T Consensus       250 ~~~~~l~~~~~~~~~~~i~--~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          250 YGCTDLESISIQNNKLRIG--GSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTCSSCCEEEECCTTCEEC--SCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEE
T ss_pred             cccccceeEEcCCCcceee--ccccccccccceeccCceeecccccccccccccccccc--ccceechhhhcCCCCCCEE
Confidence            4566777777754322110  12245567777776654322222233455677666532  233332    125566666


Q ss_pred             Eeeecc--cc-eEeeecCCccEEEEEEe-eecchhHHHhHHHHhccCcceeEEEEE
Q 015025          348 TYEFNP--IP-IISINVPCPWKVSFVCK-GVLNTHWYLKLKKFLGVSKQIESLKLS  399 (414)
Q Consensus       348 ~~~~~~--~~-~~~~~~~~L~~l~i~~~-~~~~~~~~~~l~~~l~~~~~L~~L~i~  399 (414)
                      .+...-  +. ....++++|+.+.+... ....       ...+.+|++|+++++.
T Consensus       326 ~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~I~-------~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          326 DLPYLVEEIGKRSFRGCTSLSNINFPLSLRKIG-------ANAFQGCINLKKVELP  374 (394)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEECCCTTCCEEC-------TTTBTTCTTCCEEEEE
T ss_pred             EeCCcccEEhHHhccCCCCCCEEEECccccEeh-------HHHhhCCCCCCEEEEC
Confidence            553221  11 22336788998887411 1111       2457899999988774

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.13  E-value=0.13  Score=47.82  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=16.3

Q ss_pred             cCCCCccEEEeeec--ccchHHHHHHhhcCCCCcEEEec
Q 015025          272 ARSPHLKKLDLVSV--YFADNEFNHLISKFPSLEDLFVT  308 (414)
Q Consensus       272 ~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~  308 (414)
                      .+|.+|+++.|...  .+.+    ..+.+|.+|+.+.+-
T Consensus       308 ~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          308 AGCISLKSIDIPEGITQILD----DAFAGCEQLERIAIP  342 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEEEC
T ss_pred             cCCCCcCEEEeCCcccEehH----hHhhCCCCCCEEEEC
Confidence            45566666666422  1111    124456666666664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.82  E-value=0.53  Score=38.90  Aligned_cols=21  Identities=14%  Similarity=0.282  Sum_probs=10.8

Q ss_pred             HHHHHHHhcCCcccEEEeecc
Q 015025          197 QMVQKLASECPLLEDLCFSNC  217 (414)
Q Consensus       197 ~~l~~ll~~~p~Le~L~l~~~  217 (414)
                      +.+..++.+-+.|++|+|.++
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~n   51 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNM   51 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTC
T ss_pred             HHHHHHHhcCCCccEEECCCC
Confidence            344555555555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.38  E-value=0.25  Score=40.88  Aligned_cols=94  Identities=15%  Similarity=0.119  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHh--cCceeeEEEeeeC-CC---ccccCCccccccccccEEEEecccccCCc------cccCCCCcceEEc
Q 015025          122 IVDRWIRLAVE--NGVRELDFENITD-EN---TVYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTL  189 (414)
Q Consensus       122 ~~~~w~~~~~~--~~l~~L~~~l~~~-~~---~~~~l~~~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L  189 (414)
                      .++.++..+..  ..+++|+  +... ..   ....+-..+..-++|+.|+|++|.+....      ....=..|++|+|
T Consensus        28 ~v~~~l~~ll~~n~~L~~L~--L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           28 DVESCINRLREDDTDLKEVN--INNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             CHHHHHHHHHTTCSSCCEEE--CTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             CHHHHHHHHHhcCCCccEEE--CCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence            45666666555  5677777  5421 11   11233344444567888888887765432      1112356777777


Q ss_pred             eeEEechHHHHHHHh---cCCcccEEEeecc
Q 015025          190 ERVCLDEQMVQKLAS---ECPLLEDLCFSNC  217 (414)
Q Consensus       190 ~~~~~~~~~l~~ll~---~~p~Le~L~l~~~  217 (414)
                      +++.++++....+..   .-+.|++|.|.++
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            777776666555443   3345666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	414
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.001
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.004

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 3  ETVVAMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 44
          E     D IS LP  +  +++S+L  K++ + +   + W  L
Sbjct: 11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 8  MDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYVSFPIL 51
           D I+ LP  I   + +YL  +++  +  +S+ WN++      L
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 8  MDRISELPTF----IIHHLMSYLSAKEVARTSVLSKKWNQL 44
           D I+ LP      I  +++SYL AK +    ++ K+W ++
Sbjct: 8  RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 12 SELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL 44
            LP  ++  + S L   E+ + S + K+W +L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.15
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.04
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.04
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.04
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.88
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.87
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.72
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.7
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.68
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.59
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.55
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.53
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.4
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.72
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.94
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.69
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.53
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.45

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-15  Score=134.83  Aligned_cols=154  Identities=17%  Similarity=0.239  Sum_probs=89.1

Q ss_pred             CCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEeeecc----ccceeeeecCCCeeE
Q 015025          182 CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSFS----EEIEIVEISVPSLQQ  255 (414)
Q Consensus       182 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~~----~~l~~~~~~~p~L~~  255 (414)
                      .+|++|+++++.++++.+..++..|++|++|.+.+|...+.  ..+..+++|+.|++++|.    ..+..+...+|+|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            35555555555555555555566666666666665542111  112234566666666554    111222234566666


Q ss_pred             EEEEeeCCCCc--eEEee-cCCCCccEEEeeec--ccchHHHHHHhhcCCCCcEEEecCccccccc----cccccccceE
Q 015025          256 LTLLFYGARRP--RVVEV-ARSPHLKKLDLVSV--YFADNEFNHLISKFPSLEDLFVTRCCLPGKI----KISSNQLKNL  326 (414)
Q Consensus       256 L~l~~~~~~~~--~~~~~-~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~----~~~~~~L~~L  326 (414)
                      |++++|.....  ....+ ..+++|+.|+++++  .+++..+..+..++|+|++|++++|..++..    ...+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            66664332111  11111 23578888888764  4667777778888999999999988655432    2246788888


Q ss_pred             EeccCCCce
Q 015025          327 LFRSCKYLK  335 (414)
Q Consensus       327 ~l~~c~~L~  335 (414)
                      ++++|.++.
T Consensus       206 ~L~~C~~i~  214 (284)
T d2astb2         206 SLSRCYDII  214 (284)
T ss_dssp             ECTTCTTCC
T ss_pred             ECCCCCCCC
Confidence            888887764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.2e-16  Score=138.81  Aligned_cols=175  Identities=21%  Similarity=0.267  Sum_probs=112.5

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEE-echHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVC-LDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~L  209 (414)
                      .++++|+  +..+......++..+..|++|++|++++|.+....  ....+++|++|++++|. +++..+..+..+||+|
T Consensus        46 ~~L~~Ld--Ls~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMD--LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEE--CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEE--CCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3677777  54443344445555666888888888888654322  34567888888888864 4777788888888888


Q ss_pred             cEEEeeccCCCceeec-----cCCCCCcEEEeeecc-----ccceeeeecCCCeeEEEEEeeCC-CCceEEeecCCCCcc
Q 015025          210 EDLCFSNCWGLKHLCV-----SKASKLKIMEIRSFS-----EEIEIVEISVPSLQQLTLLFYGA-RRPRVVEVARSPHLK  278 (414)
Q Consensus       210 e~L~l~~~~~~~~~~~-----~~~~~L~~L~i~~~~-----~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~~L~  278 (414)
                      ++|++++|..+....+     ..+++|+.|++.+|.     ..+..+...+|+|++|++++|.. .+.....+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            8888888866543111     134788888888764     12233334677888888874433 222223455677888


Q ss_pred             EEEeeec-ccchHHHHHHhhcCCCCcEEEecCc
Q 015025          279 KLDLVSV-YFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       279 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      +|+++++ .+++..+.. +.++|+|+.|++.+|
T Consensus       204 ~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            8888764 455555433 456778888888776

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.6e-12  Score=76.64  Aligned_cols=35  Identities=26%  Similarity=0.449  Sum_probs=32.8

Q ss_pred             cCCCChHHHHHHhcCCChhhHHhhhccccchhhhh
Q 015025           11 ISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLY   45 (414)
Q Consensus        11 i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw   45 (414)
                      ++.||+|++.+||+|||.+|++++++|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=2.7e-11  Score=103.49  Aligned_cols=169  Identities=14%  Similarity=0.072  Sum_probs=75.4

Q ss_pred             cccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeee
Q 015025          159 ANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRS  238 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~  238 (414)
                      +.+|+.|.+.+|.+........+++|++|+++++.+..-.  . +..++.|+.+.+.+|.....-.+..+++|+.+.++.
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccccccccccccccccccccccc
Confidence            3445555555554443323445555555555555442110  0 344555555555544322111233445555555554


Q ss_pred             ccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccccccc--
Q 015025          239 FSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI--  316 (414)
Q Consensus       239 ~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~--  316 (414)
                      +...........+.+..+.+..+....  ...+..+++|+.|++.++.+.+..   .+.++++|+.|++++|. ++.+  
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~Ls~n~-l~~l~~  190 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTTLKADDNK-ISDISP  190 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSC-CCCCGG
T ss_pred             ccccccchhccccchhhhhchhhhhch--hhhhccccccccccccccccccch---hhcccccceecccCCCc-cCCChh
Confidence            430000001134455555544222111  112345566666666665554321   13556666666666652 2221  


Q ss_pred             cccccccceEEeccCCCceee
Q 015025          317 KISSNQLKNLLFRSCKYLKVI  337 (414)
Q Consensus       317 ~~~~~~L~~L~l~~c~~L~~l  337 (414)
                      ...+++|++|++++| +++.+
T Consensus       191 l~~l~~L~~L~Ls~N-~lt~i  210 (227)
T d1h6ua2         191 LASLPNLIEVHLKNN-QISDV  210 (227)
T ss_dssp             GGGCTTCCEEECTTS-CCCBC
T ss_pred             hcCCCCCCEEECcCC-cCCCC
Confidence            123456666666655 34433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=1.9e-11  Score=112.83  Aligned_cols=247  Identities=14%  Similarity=0.056  Sum_probs=132.9

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      .++++|+  +..+...  .+ .++..+++|++|++++|.++..+....+++|++|+++++.+.+-  .. +.++++|+.|
T Consensus        44 ~~l~~L~--l~~~~I~--~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i--~~-l~~l~~L~~L  115 (384)
T d2omza2          44 DQVTTLQ--ADRLGIK--SI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGL  115 (384)
T ss_dssp             TTCCEEE--CCSSCCC--CC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEE
T ss_pred             CCCCEEE--CCCCCCC--Cc-cccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccc--cc-cccccccccc
Confidence            3566666  4432222  22 23445666777777776665544456666777777766666321  11 4556666666


Q ss_pred             EeeccCCCc-----------------------------------------------------------------eeeccC
Q 015025          213 CFSNCWGLK-----------------------------------------------------------------HLCVSK  227 (414)
Q Consensus       213 ~l~~~~~~~-----------------------------------------------------------------~~~~~~  227 (414)
                      .+.++....                                                                 ......
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            665432100                                                                 000112


Q ss_pred             CCCCcEEEeeecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEE
Q 015025          228 ASKLKIMEIRSFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLF  306 (414)
Q Consensus       228 ~~~L~~L~i~~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  306 (414)
                      +++++.+.++.+. ..... ...+++|++|.+.++...+ + ..+..+++|+.|++.++.+++..   .+..+++|++|+
T Consensus       196 l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEEE
T ss_pred             ccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC---cccccccCCEee
Confidence            4666666666553 11111 1245677777777433221 1 13456677777777776665422   245567777777


Q ss_pred             ecCccccc---------------------c--ccccccccceEEeccCCCceeee--ccCCccceEEeeecccc--eEee
Q 015025          307 VTRCCLPG---------------------K--IKISSNQLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNPIP--IISI  359 (414)
Q Consensus       307 l~~c~~~~---------------------~--~~~~~~~L~~L~l~~c~~L~~l~--i~~~~L~~l~~~~~~~~--~~~~  359 (414)
                      ++++....                     .  ....+++++.|+++++ +++.+.  -..++|+.+++.++.+.  ....
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~  348 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANNKVSDVSSLA  348 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCCCCCGGGG
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCCcccccCCCCCEEECCCCCCCCChhHc
Confidence            76552111                     0  0122456666766655 333332  24677888888877643  2345


Q ss_pred             ecCCccEEEEEEeeecchhHHHhHHHHhccCcceeEEEEEEE
Q 015025          360 NVPCPWKVSFVCKGVLNTHWYLKLKKFLGVSKQIESLKLSLY  401 (414)
Q Consensus       360 ~~~~L~~l~i~~~~~~~~~~~~~l~~~l~~~~~L~~L~i~~~  401 (414)
                      ++++|+++++.++. .++  +   . -++++++|+.|+|+-+
T Consensus       349 ~l~~L~~L~l~~N~-l~~--l---~-~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         349 NLTNINWLSAGHNQ-ISD--L---T-PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             GCTTCCEEECCSSC-CCB--C---G-GGTTCTTCSEEECCCE
T ss_pred             CCCCCCEEECCCCc-CCC--C---h-hhccCCCCCEeeCCCC
Confidence            67888888886442 222  1   1 1677888888877643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=8.2e-11  Score=100.36  Aligned_cols=183  Identities=13%  Similarity=0.087  Sum_probs=131.4

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      .++++|.  +..+..  ..++ .+..+++|++|++++|.+........+++|+.+.++++.++.  +.. +.+++.|+.+
T Consensus        41 ~~L~~L~--l~~~~i--~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l  112 (227)
T d1h6ua2          41 DGITTLS--AFGTGV--TTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTL  112 (227)
T ss_dssp             HTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEE
T ss_pred             CCcCEEE--CCCCCC--Ccch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccc
Confidence            5888888  654433  3453 467899999999999988766567899999999999987732  222 5679999999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  292 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (414)
                      .+.+|.......+...+.++.+.+..+..........+++|++|.+..+.....  ..++++++|+.|+++++.+++-  
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--  188 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--  188 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             ccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCCC--
Confidence            999887654444445689999998877511111124788999999985433221  2367899999999999987652  


Q ss_pred             HHHhhcCCCCcEEEecCcccccccc--ccccccceEEec
Q 015025          293 NHLISKFPSLEDLFVTRCCLPGKIK--ISSNQLKNLLFR  329 (414)
Q Consensus       293 ~~~~~~~~~L~~L~l~~c~~~~~~~--~~~~~L~~L~l~  329 (414)
                       ..+..+++|++|++++|. ++.+.  ..+++|+.|+++
T Consensus       189 -~~l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 -SPLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             -GGGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEE
T ss_pred             -hhhcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEee
Confidence             236789999999999984 33332  345666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.12  E-value=5e-11  Score=99.51  Aligned_cols=143  Identities=14%  Similarity=0.071  Sum_probs=68.4

Q ss_pred             ccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeec
Q 015025          160 NSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  239 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~  239 (414)
                      .++++|+++++.+....+...+++|++|+++++.+++-  .. +.++++|++|.+.+|.....-.+.++++|+.|+++++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccccccccccccccccccccc
Confidence            34555555555444332344455555555555544211  11 3455556665555554322222334555555555554


Q ss_pred             cccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          240 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       240 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ..........+++|+.|+++.+... ... .+..+++|+.|++.++.+++-.   .+.++++|++|++++|
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~---~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         117 QITDIDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLK---PLANLTTLERLDISSN  182 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSS
T ss_pred             ccccccccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCc---cccCCCCCCEEECCCC
Confidence            3100011123455555555532221 111 2445666677776666555421   2456667777777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=1.5e-10  Score=97.31  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=19.0

Q ss_pred             cCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          272 ARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       272 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ..+++|+.++++++.+++-   ..+.++++|++|++++|
T Consensus       153 ~~l~~L~~l~l~~n~l~~i---~~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         153 SRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             GGCTTCSEEECCSSCCCCC---GGGTTCTTCCEEECCSS
T ss_pred             ccccccccccccccccccc---ccccCCCCCCEEECCCC
Confidence            3455666666655555431   11445566666666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=2.2e-10  Score=95.44  Aligned_cols=158  Identities=18%  Similarity=0.149  Sum_probs=117.3

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      .++++|+  +..+...  .++ .+..+++|++|++++|.+........+++|++|+++++.+..-  .. +.+++.|+.|
T Consensus        40 ~~l~~L~--l~~~~i~--~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQ--ADRLGIK--SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGL  111 (199)
T ss_dssp             TTCCEEE--CTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEE
T ss_pred             cCCCEEE--CCCCCCC--Ccc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccc--cc-cccccccccc
Confidence            5888888  6543322  333 4567899999999999887765678999999999999877321  11 5689999999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeee--ecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVE--ISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADN  290 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  290 (414)
                      .+.+|.......+..+++|+.|+++++.  +..+.  ..+++|++|.+.++...+ +. .++++++|+.|+++++.+++-
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSC--CCCCGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccccccchhhhhHHhhhhhhh--hcccccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCCC
Confidence            9998876554456678999999999885  32222  367899999998543322 22 367899999999999988762


Q ss_pred             HHHHHhhcCCCCcEE
Q 015025          291 EFNHLISKFPSLEDL  305 (414)
Q Consensus       291 ~~~~~~~~~~~L~~L  305 (414)
                         ..+.++++|++|
T Consensus       188 ---~~l~~L~~L~~L  199 (199)
T d2omxa2         188 ---SVLAKLTNLESL  199 (199)
T ss_dssp             ---GGGGGCTTCSEE
T ss_pred             ---ccccCCCCCCcC
Confidence               235778888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=2.2e-10  Score=96.32  Aligned_cols=164  Identities=16%  Similarity=0.059  Sum_probs=119.0

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDL  212 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L  212 (414)
                      .++++|+  +..+..  ..++ .+..+++|++|++++|.+........+++|+.|+++++.+++  +.. +.++++|+.|
T Consensus        46 ~~L~~L~--l~~~~i--~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQII--ANNSDI--KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSL  117 (210)
T ss_dssp             HTCCEEE--CTTSCC--CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEE
T ss_pred             cCccEEE--CcCCCC--CCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-cccccccccc
Confidence            4788888  543322  2333 466789999999999988765566789999999999998843  222 5679999999


Q ss_pred             EeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHH
Q 015025          213 CFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEF  292 (414)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  292 (414)
                      .+.+|.....-.+.++++++.+.+..+.-.-......+++|+.+.++.+...+ +. .+..+++|++|+++++.+++-  
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~l--  193 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISDL--  193 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCBC--
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCCC--
Confidence            99988754433455678999999987751111123367899999999544322 21 367899999999999988752  


Q ss_pred             HHHhhcCCCCcEEEecC
Q 015025          293 NHLISKFPSLEDLFVTR  309 (414)
Q Consensus       293 ~~~~~~~~~L~~L~l~~  309 (414)
                       ..+..+++|+.|+|++
T Consensus       194 -~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 -RALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGGTTCTTCSEEEEEE
T ss_pred             -hhhcCCCCCCEEEccC
Confidence             2367889999999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.7e-10  Score=99.51  Aligned_cols=175  Identities=19%  Similarity=0.161  Sum_probs=92.1

Q ss_pred             cccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce-eec
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH-LCV  225 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~-~~~  225 (414)
                      -..+|..+.  +++++|+|++|.+...+  .+..+++|++|+|+++.++.  ++. ...++.|+.|++++|..... ..+
T Consensus        22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~   96 (266)
T d1p9ag_          22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLG   96 (266)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-cccccccccccccccccccccccc
Confidence            345565443  46777777777665432  34567777777777766531  111 23567777777776653221 122


Q ss_pred             cCCCCCcEEEeeecc-ccce-eeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCc
Q 015025          226 SKASKLKIMEIRSFS-EEIE-IVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLE  303 (414)
Q Consensus       226 ~~~~~L~~L~i~~~~-~~l~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  303 (414)
                      .++++|+.|++..+. ..+. ......++++.|.+..+....-....+..+++++.++++++.++... ...+..+++|+
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-~~~~~~l~~L~  175 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLD  175 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCC
T ss_pred             ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC-ccccccccccc
Confidence            345677777776654 1111 11124556666666633221111112344666777777766654322 12345566777


Q ss_pred             EEEecCcccccccc---ccccccceEEecc
Q 015025          304 DLFVTRCCLPGKIK---ISSNQLKNLLFRS  330 (414)
Q Consensus       304 ~L~l~~c~~~~~~~---~~~~~L~~L~l~~  330 (414)
                      +|+|++|. ++.+.   ...++|+.|++++
T Consensus       176 ~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         176 TLLLQENS-LYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCCCSEEECCS
T ss_pred             eeecccCC-CcccChhHCCCCCCCEEEecC
Confidence            77777663 22222   2244566666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=1e-09  Score=97.72  Aligned_cols=58  Identities=16%  Similarity=0.159  Sum_probs=29.4

Q ss_pred             cCceeeEEEeeeCCCccccCCcc-ccccccccEEEEecccccCCc--cccCCCCcceEEceeEEe
Q 015025          133 NGVRELDFENITDENTVYTLPQA-IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCL  194 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~  194 (414)
                      +++++|+  +..+  .-.++|.. +..+++|++|++++|.+....  .+..+++|++|++.++.+
T Consensus        31 ~~l~~L~--Ls~N--~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          31 PDTALLD--LQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             TTCCEEE--CCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCEEE--CcCC--cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            3555555  4332  22344432 334566666666665543321  344566666666665544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.88  E-value=3.9e-09  Score=96.88  Aligned_cols=165  Identities=16%  Similarity=0.102  Sum_probs=89.3

Q ss_pred             ccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEE
Q 015025          156 IFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIME  235 (414)
Q Consensus       156 l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~  235 (414)
                      ...++++..+.++++.+........+++|++|++.++.+.+-  . .+..++.|++|.+.+|...+...+..+++|+.|+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             cccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCcccccccCCEee
Confidence            344566777777766655443445566777777777666321  1 2455677777777766543333344566777777


Q ss_pred             eeeccccceee--eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccc-
Q 015025          236 IRSFSEEIEIV--EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL-  312 (414)
Q Consensus       236 i~~~~~~l~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-  312 (414)
                      ++.+.  +..+  ....+.++.+.+..+....  ...+..+++++.|+++++.+++-.   .+..+|+|++|++++|.. 
T Consensus       270 l~~~~--l~~~~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~l~  342 (384)
T d2omza2         270 LGANQ--ISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVS  342 (384)
T ss_dssp             CCSSC--CCCCGGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCC
T ss_pred             ccCcc--cCCCCcccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCCCC
Confidence            76554  1111  1244556666655322211  112445667777777766665421   245667777777776631 


Q ss_pred             -cccccccccccceEEeccC
Q 015025          313 -PGKIKISSNQLKNLLFRSC  331 (414)
Q Consensus       313 -~~~~~~~~~~L~~L~l~~c  331 (414)
                       +.. ...+++|+.|+++++
T Consensus       343 ~l~~-l~~l~~L~~L~l~~N  361 (384)
T d2omza2         343 DVSS-LANLTNINWLSAGHN  361 (384)
T ss_dssp             CCGG-GGGCTTCCEEECCSS
T ss_pred             CChh-HcCCCCCCEEECCCC
Confidence             111 123455666665544

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.6e-10  Score=82.49  Aligned_cols=38  Identities=26%  Similarity=0.433  Sum_probs=36.0

Q ss_pred             cccccCCCChHHHHHHhcCCChhhHHhhhccccchhhh
Q 015025            7 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQL   44 (414)
Q Consensus         7 ~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~l   44 (414)
                      ..|.|+.||+||+.+||+|||.+|+++++.|||+|+.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999964

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=1.6e-10  Score=84.54  Aligned_cols=40  Identities=25%  Similarity=0.468  Sum_probs=36.7

Q ss_pred             cccccCCCChHHHHHHhcCCChhhHHhhhccccchhhhhc
Q 015025            7 AMDRISELPTFIIHHLMSYLSAKEVARTSVLSKKWNQLYV   46 (414)
Q Consensus         7 ~~d~i~~LPdevL~~I~s~L~~~~~~~~~~vskrWr~lw~   46 (414)
                      ..|.|+.||+||+.+||+||+.+|++++++|||+|+++..
T Consensus         2 k~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           2 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999997543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.3e-09  Score=95.04  Aligned_cols=173  Identities=16%  Similarity=0.085  Sum_probs=107.8

Q ss_pred             ccccEEEEecccccCCccccCC-CCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee-ccCCCCCcEEEee
Q 015025          160 NSVTNLRLVWCRLEQPFDSIML-CSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC-VSKASKLKIMEIR  237 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~-~~~~~~L~~L~i~  237 (414)
                      .++.+++-++..++..+  .++ ++|++|+|+++.++.-. ...+.++++|++|+|.+|.. ..+. ...+++|+.|+++
T Consensus        10 ~~~~~v~C~~~~L~~iP--~~lp~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALP--PDLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSCC--SCCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCeeC--cCcCcCCCEEECcCCcCCCcC-HHHhhccccccccccccccc-cccccccccccccccccc
Confidence            34555555555555433  233 57999999999773211 12356799999999998853 4433 3467899999999


Q ss_pred             ecc-ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcccccc-
Q 015025          238 SFS-EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCLPGK-  315 (414)
Q Consensus       238 ~~~-~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~-  315 (414)
                      ++. .........+++|+.|+++.+.........+..+++++.|++.++.+..-. ...+..+++|+.|++.+|..... 
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             cccccccccccccccccccccccccccceeeccccccccccccccccccccceec-cccccccccchhcccccccccccC
Confidence            886 222333346788888888844332222233456778888888877665322 23345678888888888733221 


Q ss_pred             --ccccccccceEEeccCCCceeee
Q 015025          316 --IKISSNQLKNLLFRSCKYLKVID  338 (414)
Q Consensus       316 --~~~~~~~L~~L~l~~c~~L~~l~  338 (414)
                        ....+++|+.|+++++. |+.++
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~-L~~lp  188 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENS-LYTIP  188 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred             ccccccccccceeecccCC-CcccC
Confidence              12335677778877653 55553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.1e-09  Score=94.64  Aligned_cols=181  Identities=15%  Similarity=0.074  Sum_probs=106.3

Q ss_pred             CccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee-
Q 015025          147 NTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-  223 (414)
Q Consensus       147 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~-  223 (414)
                      ....++|..+.  +++++|+|++|.++..+  .+.++++|++|+++++.+... ......+++.++++.+.....+..+ 
T Consensus        21 ~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          21 QGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             SCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            33456666554  46889999998875433  467788999999988776211 1122456778888877655554433 


Q ss_pred             --eccCCCCCcEEEeeecc-cccee-eeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcC
Q 015025          224 --CVSKASKLKIMEIRSFS-EEIEI-VEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKF  299 (414)
Q Consensus       224 --~~~~~~~L~~L~i~~~~-~~l~~-~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  299 (414)
                        .+.++++|+.|++..+. ..... .....++|+.+.+..+....-....+..+++|+.|+++++.+..-. ...+..+
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~-~~~f~~l  176 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-ERAFRGL  176 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTC
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc-hhhhccc
Confidence              34467788888888775 11111 1224567777777743322111122445677788888777664321 2344567


Q ss_pred             CCCcEEEecCccccccc---cccccccceEEeccC
Q 015025          300 PSLEDLFVTRCCLPGKI---KISSNQLKNLLFRSC  331 (414)
Q Consensus       300 ~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c  331 (414)
                      ++|+.+.+..|......   ...+++|+.|+++++
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccchhhhhhccccccChhHhhhhhhccccccccc
Confidence            77888877776333221   223455666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.72  E-value=5.8e-10  Score=99.84  Aligned_cols=209  Identities=13%  Similarity=0.029  Sum_probs=125.9

Q ss_pred             ccccEEEEecccccC----CccccCCCCcceEEceeE-EechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCc
Q 015025          160 NSVTNLRLVWCRLEQ----PFDSIMLCSLKKLTLERV-CLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLK  232 (414)
Q Consensus       160 ~~L~~L~l~~~~l~~----~~~~~~l~~L~~L~L~~~-~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~  232 (414)
                      .++++|+|+++.+..    +.....+++|++|+|+++ .+.. .++.-+.++++|++|+|++|.....  ..+..+++|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhc
Confidence            368999999987653    236778999999999875 3421 2333467899999999998875332  2234568899


Q ss_pred             EEEeeecc--ccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCc-cEEEeeecccchHHHHHHhhcCCCCcEEEecC
Q 015025          233 IMEIRSFS--EEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHL-KKLDLVSVYFADNEFNHLISKFPSLEDLFVTR  309 (414)
Q Consensus       233 ~L~i~~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  309 (414)
                      .+++..+.  ..+......+++|+.+.+..+.....++..+..++.+ +.+++..+.++..... .+... ....+.+..
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~-~~~~l-~~~~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGC-CCSEEECCS
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccc-ccccc-ccccccccc
Confidence            99888765  1111222367888888887443322233334455554 7777777666543221 22333 344577666


Q ss_pred             ccccc---cccccccccceEEeccCCCceeee--ccCCccceEEeeecc----cceEeeecCCccEEEEEE
Q 015025          310 CCLPG---KIKISSNQLKNLLFRSCKYLKVID--VDAPNLLLFTYEFNP----IPIISINVPCPWKVSFVC  371 (414)
Q Consensus       310 c~~~~---~~~~~~~~L~~L~l~~c~~L~~l~--i~~~~L~~l~~~~~~----~~~~~~~~~~L~~l~i~~  371 (414)
                      +....   ......+.++.+++.++.--..+.  -..++++.+++.++.    +|....++++|++|++++
T Consensus       207 ~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence            53222   222345677777777663211111  124667777777765    333455678888888863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.70  E-value=3.8e-08  Score=88.82  Aligned_cols=96  Identities=26%  Similarity=0.219  Sum_probs=59.8

Q ss_pred             HHhcCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcC-Cc
Q 015025          130 AVENGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASEC-PL  208 (414)
Q Consensus       130 ~~~~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~-p~  208 (414)
                      +...++++|+  +....  -.++|..   .++|++|+++++.++..+  ..+.+|++|++.++.++.      +..+ +.
T Consensus        35 c~~~~l~~Ld--Ls~~~--L~~lp~~---~~~L~~L~Ls~N~l~~lp--~~~~~L~~L~l~~n~l~~------l~~lp~~   99 (353)
T d1jl5a_          35 CLDRQAHELE--LNNLG--LSSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA------LSDLPPL   99 (353)
T ss_dssp             HHHHTCSEEE--CTTSC--CSCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC------CCSCCTT
T ss_pred             HHHcCCCEEE--eCCCC--CCCCCCC---CCCCCEEECCCCCCcccc--cchhhhhhhhhhhcccch------hhhhccc
Confidence            3345788888  54332  3456653   357888888888776543  335688888888776631      1123 46


Q ss_pred             ccEEEeeccCCCceeeccCCCCCcEEEeeecc
Q 015025          209 LEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS  240 (414)
Q Consensus       209 Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~  240 (414)
                      |++|++.++....--....+++|+.|++.++.
T Consensus       100 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccchhhhccceeecccccc
Confidence            88888887753222223356788888887664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.68  E-value=1.1e-08  Score=91.38  Aligned_cols=104  Identities=18%  Similarity=0.102  Sum_probs=59.7

Q ss_pred             CceeeEEEeeeCCC-ccccCCccccccccccEEEEec-cccc--CCccccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          134 GVRELDFENITDEN-TVYTLPQAIFSANSVTNLRLVW-CRLE--QPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       134 ~l~~L~~~l~~~~~-~~~~l~~~l~~~~~L~~L~l~~-~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      +|.+|+  +..... ....+|..+..+++|++|+|++ +.+.  .+.....+++|++|+|+++.+.. ........++.|
T Consensus        51 ~v~~L~--L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLD--LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEE--EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTC
T ss_pred             EEEEEE--CCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc-cccccccchhhh
Confidence            466666  443222 2235777777777777777776 3443  22255667777777777776621 111224456777


Q ss_pred             cEEEeeccCCCcee--eccCCCCCcEEEeeecc
Q 015025          210 EDLCFSNCWGLKHL--CVSKASKLKIMEIRSFS  240 (414)
Q Consensus       210 e~L~l~~~~~~~~~--~~~~~~~L~~L~i~~~~  240 (414)
                      +.+.+..+.....+  .+.++++|+.++++++.
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccCchhhccCcccceeeccccc
Confidence            77777665433221  23456677777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.59  E-value=9e-09  Score=91.49  Aligned_cols=246  Identities=13%  Similarity=0.032  Sum_probs=156.4

Q ss_pred             CccccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee
Q 015025          147 NTVYTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC  224 (414)
Q Consensus       147 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~  224 (414)
                      ..-.++|..+.  +++++|++++|.++..+  .+..+++|++|+++++.+..- ....+.+++.|+.|.+.+|. ++.+.
T Consensus        20 ~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~-l~~l~   95 (305)
T d1xkua_          20 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ-LKELP   95 (305)
T ss_dssp             SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-CSBCC
T ss_pred             CCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc-cCcCc
Confidence            34567787664  57999999999876554  467899999999999987321 12235679999999999885 44443


Q ss_pred             ccCCCCCcEEEeeecc-ccceee-eecCCCeeEEEEEeeCCC--CceEEeecCCCCccEEEeeecccchHHHHHHhhcCC
Q 015025          225 VSKASKLKIMEIRSFS-EEIEIV-EISVPSLQQLTLLFYGAR--RPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFP  300 (414)
Q Consensus       225 ~~~~~~L~~L~i~~~~-~~l~~~-~~~~p~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  300 (414)
                      ....+.++.|....+. ..+... ....+.+..+....+...  ......+..+++|+.+++.++.+..-.    ...++
T Consensus        96 ~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~----~~~~~  171 (305)
T d1xkua_          96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPP  171 (305)
T ss_dssp             SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCT
T ss_pred             cchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC----cccCC
Confidence            3335788888887764 111111 123455666665522211  111223556789999999888765421    12468


Q ss_pred             CCcEEEecCccccccc---cccccccceEEeccCCCceeee----ccCCccceEEeeeccc---ceEeeecCCccEEEEE
Q 015025          301 SLEDLFVTRCCLPGKI---KISSNQLKNLLFRSCKYLKVID----VDAPNLLLFTYEFNPI---PIISINVPCPWKVSFV  370 (414)
Q Consensus       301 ~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~c~~L~~l~----i~~~~L~~l~~~~~~~---~~~~~~~~~L~~l~i~  370 (414)
                      +|+.|++.++......   ....+.++.|+++++ .+..+.    -+.++|+.+++.++.+   |.....+++|+.++++
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeecccccccccccccccccCCCEEECC
Confidence            9999999987443332   234567888888776 444443    2368899999988873   3344568899999997


Q ss_pred             Eee-e-cchhHHHhHHHHhccCcceeEEEEEEEE
Q 015025          371 CKG-V-LNTHWYLKLKKFLGVSKQIESLKLSLYS  402 (414)
Q Consensus       371 ~~~-~-~~~~~~~~l~~~l~~~~~L~~L~i~~~~  402 (414)
                      .+. . .+. ............++|+.|.++-++
T Consensus       251 ~N~i~~i~~-~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         251 NNNISAIGS-NDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SSCCCCCCT-TSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCccCccCh-hhccCcchhcccCCCCEEECCCCc
Confidence            432 1 111 000012234566788988887544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.1e-08  Score=89.88  Aligned_cols=191  Identities=14%  Similarity=0.040  Sum_probs=105.2

Q ss_pred             cCceeeEEEeeeCCCccccCCcc-ccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcc
Q 015025          133 NGVRELDFENITDENTVYTLPQA-IFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLL  209 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L  209 (414)
                      .++++|+  +..+.  -.++|.. +..++.|++|+++++.+....  ....++.++.+...............+.++++|
T Consensus        32 ~~~~~L~--Ls~N~--i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIF--LHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEE--CTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEE--CcCCc--CCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccC
Confidence            4667777  54332  2355543 445788888888887654332  344556666665543322000111224567788


Q ss_pred             cEEEeeccCCCc--eeeccCCCCCcEEEeeeccccceee----eecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEee
Q 015025          210 EDLCFSNCWGLK--HLCVSKASKLKIMEIRSFSEEIEIV----EISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLV  283 (414)
Q Consensus       210 e~L~l~~~~~~~--~~~~~~~~~L~~L~i~~~~~~l~~~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  283 (414)
                      ++|.+.++....  .......++|+.+++.++.  +..+    ....++|+.|.++++....-....+..+++|+.+++.
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~--l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEecCCcccccccccccchhcccchhhhcccc--ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            888887765321  1222345677777777664  2222    1245677777777433211111234567778888887


Q ss_pred             ecccchHHHHHHhhcCCCCcEEEecCccccccc---cccccccceEEecc
Q 015025          284 SVYFADNEFNHLISKFPSLEDLFVTRCCLPGKI---KISSNQLKNLLFRS  330 (414)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~---~~~~~~L~~L~l~~  330 (414)
                      .+.+++-. ...+..+++|++|++++|......   ....++|++|++++
T Consensus       186 ~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         186 QNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             SSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             hccccccC-hhHhhhhhhcccccccccccccccccccccccccCEEEecC
Confidence            77665422 234566777888888776433221   22345666666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=3.2e-09  Score=84.91  Aligned_cols=38  Identities=11%  Similarity=-0.040  Sum_probs=23.2

Q ss_pred             cccccccEEEEecccccCCc-cccCCCCcceEEceeEEe
Q 015025          157 FSANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERVCL  194 (414)
Q Consensus       157 ~~~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~~~  194 (414)
                      .++..|++|+|++|.++..+ ....+++|+.|+|+++.+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i   53 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI   53 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCC
Confidence            34566777887777765543 234556666666666654

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.1e-09  Score=78.02  Aligned_cols=38  Identities=32%  Similarity=0.649  Sum_probs=35.1

Q ss_pred             cccccCCCC----hHHHHHHhcCCChhhHHhhhccccchhhh
Q 015025            7 AMDRISELP----TFIIHHLMSYLSAKEVARTSVLSKKWNQL   44 (414)
Q Consensus         7 ~~d~i~~LP----devL~~I~s~L~~~~~~~~~~vskrWr~l   44 (414)
                      ..|.|+.||    |||+.+|||||+.+|++++++|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            468999999    59999999999999999999999999864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.53  E-value=2.8e-09  Score=88.40  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             ceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEe
Q 015025          135 VRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCF  214 (414)
Q Consensus       135 l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l  214 (414)
                      .++++  +.........++..+..+++|++|++++|.+........+++|++|+++++.++.  +..+...++.|+.|++
T Consensus        25 ~~~~~--l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          25 AEKVE--LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWI  100 (198)
T ss_dssp             CSCEE--CCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEEC
T ss_pred             cceee--eecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccc
Confidence            34444  4332333455666677778888888888877654456677888888888887732  1222233456677776


Q ss_pred             eccC
Q 015025          215 SNCW  218 (414)
Q Consensus       215 ~~~~  218 (414)
                      .+|.
T Consensus       101 ~~N~  104 (198)
T d1m9la_         101 SYNQ  104 (198)
T ss_dssp             SEEE
T ss_pred             cccc
Confidence            6653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.1e-09  Score=96.84  Aligned_cols=108  Identities=19%  Similarity=0.173  Sum_probs=70.3

Q ss_pred             ccceEEEEEEecccCCChhHHHHHHHHH-HhcCceeeEEEeeeCCCcc---ccCCccccccccccEEEEecccccCCc--
Q 015025          103 CIQKFRLFLTFLDVKGSAPIVDRWIRLA-VENGVRELDFENITDENTV---YTLPQAIFSANSVTNLRLVWCRLEQPF--  176 (414)
Q Consensus       103 ~l~~l~l~~~~~~~~~~~~~~~~w~~~~-~~~~l~~L~~~l~~~~~~~---~~l~~~l~~~~~L~~L~l~~~~l~~~~--  176 (414)
                      .++++.++...    ...   ..|.... ..++++.|+  +..+....   ..+...+..+++|++|+|++|.++...  
T Consensus         3 ~l~~ld~~~~~----i~~---~~~~~l~~~l~~l~~L~--L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           3 DIQSLDIQCEE----LSD---ARWAELLPLLQQCQVVR--LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEESCC----CCH---HHHHHHHHHHTTCSEEE--EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCEEEeeCCc----CCh---HHHHHHHHhCCCCCEEE--eCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            45666665442    222   3333332 237899999  76664433   345555677899999999998765321  


Q ss_pred             -cc----cCCCCcceEEceeEEechHH---HHHHHhcCCcccEEEeeccCC
Q 015025          177 -DS----IMLCSLKKLTLERVCLDEQM---VQKLASECPLLEDLCFSNCWG  219 (414)
Q Consensus       177 -~~----~~l~~L~~L~L~~~~~~~~~---l~~ll~~~p~Le~L~l~~~~~  219 (414)
                       ..    ....+|++|+|+++.++++.   +...+..++.|++|++.+|..
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence             11    12357999999999886554   444566899999999988763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=5.9e-08  Score=82.89  Aligned_cols=89  Identities=16%  Similarity=0.183  Sum_probs=50.7

Q ss_pred             ccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceee---
Q 015025          150 YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLC---  224 (414)
Q Consensus       150 ~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~---  224 (414)
                      ..+|..+.  +++++|+++++.+...+  .+.++++|++|+++++.+....-...+.+++.+++|.+..+..+....   
T Consensus        21 ~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          21 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             SSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS
T ss_pred             CCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc
Confidence            45555443  36778888877765332  346677777777777644211001113456777777766655444332   


Q ss_pred             ccCCCCCcEEEeeecc
Q 015025          225 VSKASKLKIMEIRSFS  240 (414)
Q Consensus       225 ~~~~~~L~~L~i~~~~  240 (414)
                      +.++++|+.+.+.++.
T Consensus        99 ~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTG  114 (242)
T ss_dssp             EECCTTCCEEEEESCC
T ss_pred             ccccccccccccchhh
Confidence            2356677777777664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.48  E-value=2.8e-08  Score=89.87  Aligned_cols=188  Identities=16%  Similarity=0.111  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHh-cCceeeEEEeeeCCC---ccccCCccccccccccEEEEecccccCCc------------cccCCCCcc
Q 015025          122 IVDRWIRLAVE-NGVRELDFENITDEN---TVYTLPQAIFSANSVTNLRLVWCRLEQPF------------DSIMLCSLK  185 (414)
Q Consensus       122 ~~~~w~~~~~~-~~l~~L~~~l~~~~~---~~~~l~~~l~~~~~L~~L~l~~~~l~~~~------------~~~~l~~L~  185 (414)
                      .+..++..... ..+++|+  +..+..   ....+...+...++|+.|+++++......            ....+++|+
T Consensus        19 ~~~~l~~~L~~~~~l~~L~--Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~   96 (344)
T d2ca6a1          19 DEKSVFAVLLEDDSVKEIV--LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   96 (344)
T ss_dssp             HHHTTSHHHHHCSCCCEEE--CTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHHhhCCCCCEEE--CcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcc
Confidence            33444433332 5566666  432211   11233334445566777777665322110            123456677


Q ss_pred             eEEceeEEechH---HHHHHHhcCCcccEEEeeccCCCce-----------ee----ccCCCCCcEEEeeecc---ccce
Q 015025          186 KLTLERVCLDEQ---MVQKLASECPLLEDLCFSNCWGLKH-----------LC----VSKASKLKIMEIRSFS---EEIE  244 (414)
Q Consensus       186 ~L~L~~~~~~~~---~l~~ll~~~p~Le~L~l~~~~~~~~-----------~~----~~~~~~L~~L~i~~~~---~~l~  244 (414)
                      .|+|+++.++..   .+...+..++.|++|.+.+|.....           ..    ....+.|+.+.+..+.   ....
T Consensus        97 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~  176 (344)
T d2ca6a1          97 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  176 (344)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             cccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccc
Confidence            777777766332   3444455667777777766643110           00    0124566666665543   1111


Q ss_pred             ee---eecCCCeeEEEEEeeCCCCc-----eEEeecCCCCccEEEeeecccchHH---HHHHhhcCCCCcEEEecCcc
Q 015025          245 IV---EISVPSLQQLTLLFYGARRP-----RVVEVARSPHLKKLDLVSVYFADNE---FNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       245 ~~---~~~~p~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~  311 (414)
                      .+   ....+.|+.|.+..+.....     ....+..+++|+.|+++++.+++..   +...+..+++|++|.+++|.
T Consensus       177 ~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         177 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             cccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            11   12345666666653322111     1112345566777777666655432   33445566667777776663

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=2.8e-08  Score=75.43  Aligned_cols=75  Identities=17%  Similarity=0.003  Sum_probs=35.3

Q ss_pred             cEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeec
Q 015025          163 TNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSF  239 (414)
Q Consensus       163 ~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~  239 (414)
                      |.|+++++.++..+....+++|++|+++++.++.  ++..+..+++|+.|+++++....--.+..+++|+.|+++++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccCccccccccCeEECCCC
Confidence            3456666655544444555566666666555521  11123455566666665553211111223444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.44  E-value=4.9e-08  Score=88.16  Aligned_cols=184  Identities=12%  Similarity=0.083  Sum_probs=118.9

Q ss_pred             cccCCccccccccccEEEEecccccCCc------cccCCCCcceEEceeEEec------h---HHHHHHHhcCCcccEEE
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCRLEQPF------DSIMLCSLKKLTLERVCLD------E---QMVQKLASECPLLEDLC  213 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~------~~~~l~~L~~L~L~~~~~~------~---~~l~~ll~~~p~Le~L~  213 (414)
                      ...+...+....+|+.|+|++|.+....      .....++|+.+.+.++...      .   ..+...+..|++|++|+
T Consensus        20 ~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          20 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            3455556666889999999998764422      3456789999999877541      1   23444466799999999


Q ss_pred             eeccCCCce----e--eccCCCCCcEEEeeeccc---c-------ceee-----eecCCCeeEEEEEeeCCCC----ceE
Q 015025          214 FSNCWGLKH----L--CVSKASKLKIMEIRSFSE---E-------IEIV-----EISVPSLQQLTLLFYGARR----PRV  268 (414)
Q Consensus       214 l~~~~~~~~----~--~~~~~~~L~~L~i~~~~~---~-------l~~~-----~~~~p~L~~L~l~~~~~~~----~~~  268 (414)
                      |.+|..-..    +  .+..+++|+.|++.+|..   .       +...     ....+.|+.+.++.+....    .+.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            998864221    1  122468999999998750   0       0100     1245778888877432211    111


Q ss_pred             EeecCCCCccEEEeeecccchHHH----HHHhhcCCCCcEEEecCccccc-------cccccccccceEEeccCC
Q 015025          269 VEVARSPHLKKLDLVSVYFADNEF----NHLISKFPSLEDLFVTRCCLPG-------KIKISSNQLKNLLFRSCK  332 (414)
Q Consensus       269 ~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~c~~~~-------~~~~~~~~L~~L~l~~c~  332 (414)
                      ..+..++.|+.|+++.+.+.....    ...+..+++|+.|++++|....       .....+++|+.|++++|.
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            123467889999999888876543    3346678899999998874321       223346788888888774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.1e-07  Score=75.73  Aligned_cols=60  Identities=13%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             ccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee-eccCCCCCcEEEeeecc
Q 015025          178 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL-CVSKASKLKIMEIRSFS  240 (414)
Q Consensus       178 ~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~-~~~~~~~L~~L~i~~~~  240 (414)
                      ...+.+|+.|+|+++.++.  ++.+...+++|+.|++++|.. ..+ .+..+++|+.|++++|.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i-~~l~~~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCC-CEECCCCCCSSCCEEECCSSC
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCC-CccCCcccCcchhhhhccccc
Confidence            3455667777777776631  123345567777777777653 222 23445666666666664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=5.1e-08  Score=91.18  Aligned_cols=91  Identities=20%  Similarity=0.071  Sum_probs=54.7

Q ss_pred             cccceEEEEEEecccCCChhHHHHHHHHHHh--cCceeeEEEeeeCCCccc---cCCccccc-cccccEEEEecccccCC
Q 015025          102 FCIQKFRLFLTFLDVKGSAPIVDRWIRLAVE--NGVRELDFENITDENTVY---TLPQAIFS-ANSVTNLRLVWCRLEQP  175 (414)
Q Consensus       102 ~~l~~l~l~~~~~~~~~~~~~~~~w~~~~~~--~~l~~L~~~l~~~~~~~~---~l~~~l~~-~~~L~~L~l~~~~l~~~  175 (414)
                      ..++++.+.-..    ... .--..+..+..  +++++|+  +..+.....   .+...+.. ..+|++|++++|.++..
T Consensus        27 ~~l~~L~L~~~~----i~~-~~~~~l~~~L~~~~~L~~Ld--Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~   99 (460)
T d1z7xw1          27 QQCQVVRLDDCG----LTE-ARCKDISSALRVNPALAELN--LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA   99 (460)
T ss_dssp             TTCSEEEEESSC----CCH-HHHHHHHHHHHTCTTCCEEE--CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred             CCCCEEEeCCCC----CCH-HHHHHHHHHHhcCCCCCEEE--CcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccc
Confidence            355666666331    111 22233444443  7899999  654433322   22323322 45799999999987654


Q ss_pred             c------cccCCCCcceEEceeEEechHHH
Q 015025          176 F------DSIMLCSLKKLTLERVCLDEQMV  199 (414)
Q Consensus       176 ~------~~~~l~~L~~L~L~~~~~~~~~l  199 (414)
                      .      ....+++|++|+++++.+++...
T Consensus       100 ~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~  129 (460)
T d1z7xw1         100 GCGVLSSTLRTLPTLQELHLSDNLLGDAGL  129 (460)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred             ccccccchhhccccccccccccccchhhhh
Confidence            3      24578999999999988754433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.3e-07  Score=79.11  Aligned_cols=195  Identities=15%  Similarity=0.039  Sum_probs=105.0

Q ss_pred             cCceeeEEEeeeCCCccccCCccc-cccccccEEEEecccccCC--c-cccCCCCcceEEceeEEechHHHHHHHhcCCc
Q 015025          133 NGVRELDFENITDENTVYTLPQAI-FSANSVTNLRLVWCRLEQP--F-DSIMLCSLKKLTLERVCLDEQMVQKLASECPL  208 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l-~~~~~L~~L~l~~~~l~~~--~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~  208 (414)
                      +++++|+  +....  -..+|... ..+++|++|++++|.+...  . .+..++.++++.+..+..-.......+.++++
T Consensus        29 ~~l~~L~--Ls~n~--i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~  104 (242)
T d1xwdc1          29 RNAIELR--FVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  104 (242)
T ss_dssp             SCCSEEE--EESCC--CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred             CCCCEEE--CcCCc--CCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccc
Confidence            4788888  65432  34566654 4589999999999875432  1 45678899999876542200111223567999


Q ss_pred             ccEEEeeccCCCceeeccCCCCCcEEEeeecc-ccceeeee----c-CCCeeEEEEEeeCCCCceEEeecCCCCccEEEe
Q 015025          209 LEDLCFSNCWGLKHLCVSKASKLKIMEIRSFS-EEIEIVEI----S-VPSLQQLTLLFYGARRPRVVEVARSPHLKKLDL  282 (414)
Q Consensus       209 Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~-~~l~~~~~----~-~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  282 (414)
                      |++|.+.++..........+..++.+...... ..+..+..    . .+.++.|.+..+.. ..+.......++++++..
T Consensus       105 L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l-~~i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         105 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNCAFNGTQLDELNL  183 (242)
T ss_dssp             CCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECTTTTTTCCEEEEEC
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc-cccccccccchhhhcccc
Confidence            99999998864332222234455555543322 12333321    1 23566677663222 222222223455555543


Q ss_pred             -eecccchHHHHHHhhcCCCCcEEEecCcccccccc-ccccccceEEeccCCCc
Q 015025          283 -VSVYFADNEFNHLISKFPSLEDLFVTRCCLPGKIK-ISSNQLKNLLFRSCKYL  334 (414)
Q Consensus       283 -~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~L~~L~l~~c~~L  334 (414)
                       .++.++.- ....+.++++|+.|+++++.. ..+. ..+.++..|...+..++
T Consensus       184 l~~n~l~~l-~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         184 SDNNNLEEL-PNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TTCTTCCCC-CTTTTTTSCCCSEEECTTSCC-CCCCSSSCTTCCEEESSSEESS
T ss_pred             ccccccccc-cHHHhcCCCCCCEEECCCCcC-CccCHHHHcCCcccccCcCCCC
Confidence             44444321 122356788899999988743 2222 22444444443333333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.34  E-value=1.2e-08  Score=84.53  Aligned_cols=108  Identities=15%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             ccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCceeeccCCCCCcEEEeeeccccceeeeecCCCeeEEE
Q 015025          178 SIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHLCVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLT  257 (414)
Q Consensus       178 ~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~  257 (414)
                      ...+++|++|+|+++.++.  +.. +.++++|+.|++++|.. ..+.                    .+....++|++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~i-~~i~--------------------~~~~~~~~L~~L~   99 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNLI-KKIE--------------------NLDAVADTLEELW   99 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEEE-CSCS--------------------SHHHHHHHCCEEE
T ss_pred             HhcccccceeECcccCCCC--ccc-ccCCccccChhhccccc-cccc--------------------ccccccccccccc
Confidence            4556777777777777632  111 34566666666666531 1111                    1111223455555


Q ss_pred             EEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCcc
Q 015025          258 LLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCC  311 (414)
Q Consensus       258 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  311 (414)
                      ++++.... +. .+..+++|+.|+++++.+++-.....+..+++|+.|++.+|+
T Consensus       100 l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         100 ISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             CSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            44332211 11 234567777777777777654333456677788888887764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.32  E-value=7.3e-07  Score=80.07  Aligned_cols=74  Identities=16%  Similarity=0.111  Sum_probs=48.2

Q ss_pred             cCceeeEEEeeeCCCccccCCccccccccccEEEEecccccCCccccCC-CCcceEEceeEEechHHHHHHHhcCCcccE
Q 015025          133 NGVRELDFENITDENTVYTLPQAIFSANSVTNLRLVWCRLEQPFDSIML-CSLKKLTLERVCLDEQMVQKLASECPLLED  211 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~  211 (414)
                      +++++|+  +..+  .-.++|..   ..+|+.|++.++.+....   .+ +.|++|+++++.+..  +.. ...++.|+.
T Consensus        58 ~~L~~L~--Ls~N--~l~~lp~~---~~~L~~L~l~~n~l~~l~---~lp~~L~~L~L~~n~l~~--lp~-~~~l~~L~~  124 (353)
T d1jl5a_          58 PHLESLV--ASCN--SLTELPEL---PQSLKSLLVDNNNLKALS---DLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKI  124 (353)
T ss_dssp             TTCSEEE--CCSS--CCSSCCCC---CTTCCEEECCSSCCSCCC---SCCTTCCEEECCSSCCSS--CCC-CTTCTTCCE
T ss_pred             CCCCEEE--CCCC--CCcccccc---hhhhhhhhhhhcccchhh---hhcccccccccccccccc--ccc-hhhhcccee
Confidence            5788888  6533  23366654   357888888888765422   23 468899988887732  111 346788888


Q ss_pred             EEeeccCC
Q 015025          212 LCFSNCWG  219 (414)
Q Consensus       212 L~l~~~~~  219 (414)
                      |.+.++..
T Consensus       125 L~l~~~~~  132 (353)
T d1jl5a_         125 IDVDNNSL  132 (353)
T ss_dssp             EECCSSCC
T ss_pred             eccccccc
Confidence            88877653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=8.3e-07  Score=66.96  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=23.6

Q ss_pred             ecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCc
Q 015025          271 VARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c  310 (414)
                      +..+++|+.|+++++.+........+..+++|+.|++.++
T Consensus        61 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCC
Confidence            4456667777776666554322233456677777777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.81  E-value=4.3e-06  Score=68.22  Aligned_cols=116  Identities=21%  Similarity=0.107  Sum_probs=67.6

Q ss_pred             CccccCCccccccccccEEEEecccccC-Cc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCcee
Q 015025          147 NTVYTLPQAIFSANSVTNLRLVWCRLEQ-PF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKHL  223 (414)
Q Consensus       147 ~~~~~l~~~l~~~~~L~~L~l~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~~  223 (414)
                      ..-..+|..+.  +++++|+|+++.+.. ..  .+..+++|+.|+|+++.+... ....+.+.+.|++|+++++.. ..+
T Consensus        18 ~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l-~~l   93 (192)
T d1w8aa_          18 RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEI   93 (192)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEE
T ss_pred             CCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccc-ccc
Confidence            34456666554  578888888887753 21  456778888888877766211 122344567777777777643 222


Q ss_pred             ---eccCCCCCcEEEeeeccccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccc
Q 015025          224 ---CVSKASKLKIMEIRSFSEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFA  288 (414)
Q Consensus       224 ---~~~~~~~L~~L~i~~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  288 (414)
                         .+.++++|+.|+++++.  +..+.                    ...+..+++|++|+++++.+.
T Consensus        94 ~~~~F~~l~~L~~L~L~~N~--l~~i~--------------------~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          94 SNKMFLGLHQLKTLNLYDNQ--ISCVM--------------------PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSC--CCEEC--------------------TTSSTTCTTCCEEECTTCCBC
T ss_pred             CHHHHhCCCcccccccCCcc--ccccC--------------------HHHhcCCcccccccccccccc
Confidence               23345666666666553  22211                    112346777888888776553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.72  E-value=3.8e-06  Score=68.58  Aligned_cols=127  Identities=15%  Similarity=0.014  Sum_probs=73.1

Q ss_pred             ccEEEEecccccCCccccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccCCCce--eeccCCCCCcEEEeeec
Q 015025          162 VTNLRLVWCRLEQPFDSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCWGLKH--LCVSKASKLKIMEIRSF  239 (414)
Q Consensus       162 L~~L~l~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~~~~~--~~~~~~~~L~~L~i~~~  239 (414)
                      .+.++.++..++..+ ..-.+++++|+|+++.++.......+.++++|++|.+.++.....  -.+..+++|+.|+++++
T Consensus        10 ~~~v~Cs~~~L~~iP-~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIP-RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCC-SCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCCcCccC-CCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            345666666665443 112357888888888773211122234566777777766543211  11223455555555544


Q ss_pred             cccceeeeecCCCeeEEEEEeeCCCCceEEeecCCCCccEEEeeecccchHHHHHHhhcCCCCcEEEecCccc
Q 015025          240 SEEIEIVEISVPSLQQLTLLFYGARRPRVVEVARSPHLKKLDLVSVYFADNEFNHLISKFPSLEDLFVTRCCL  312 (414)
Q Consensus       240 ~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  312 (414)
                      .  +..+                    .+..+.++++|+.|+|+++.++.-. ...+..+++|++|+|.+++.
T Consensus        89 ~--l~~l--------------------~~~~F~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 K--IKEI--------------------SNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             C--CCEE--------------------CSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred             c--cccc--------------------CHHHHhCCCcccccccCCccccccC-HHHhcCCccccccccccccc
Confidence            2  1111                    1112567899999999998876422 23456789999999998743

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.94  E-value=0.0002  Score=56.39  Aligned_cols=44  Identities=7%  Similarity=0.168  Sum_probs=22.0

Q ss_pred             HHHHHHHhcCCcccEEEeeccCCCcee-------eccCCCCCcEEEeeecc
Q 015025          197 QMVQKLASECPLLEDLCFSNCWGLKHL-------CVSKASKLKIMEIRSFS  240 (414)
Q Consensus       197 ~~l~~ll~~~p~Le~L~l~~~~~~~~~-------~~~~~~~L~~L~i~~~~  240 (414)
                      +.+..+..++|.|++|+|.++..+..-       .+...++|+.|++++|.
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~   55 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA   55 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc
Confidence            445555566666666666554332211       11223556666665553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00055  Score=53.12  Aligned_cols=69  Identities=20%  Similarity=0.073  Sum_probs=39.6

Q ss_pred             cccCCccccccccccEEEEeccc-ccCCc--cccCCCCcceEEceeEEechHHHHHHHhcCCcccEEEeeccC
Q 015025          149 VYTLPQAIFSANSVTNLRLVWCR-LEQPF--DSIMLCSLKKLTLERVCLDEQMVQKLASECPLLEDLCFSNCW  218 (414)
Q Consensus       149 ~~~l~~~l~~~~~L~~L~l~~~~-l~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~~~  218 (414)
                      ..+.|..+...++|++|++.++. +....  .+.++++|+.|+++++.++.-. ...+.++++|++|+|+++.
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC
Confidence            34556666667778888876543 44322  3556777777777776652110 1123456666666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00044  Score=53.71  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=17.1

Q ss_pred             cccccEEEEecccccCCc-cccCCCCcceEEceeE
Q 015025          159 ANSVTNLRLVWCRLEQPF-DSIMLCSLKKLTLERV  192 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~-~~~~l~~L~~L~L~~~  192 (414)
                      |.....++.++..+...+ ...++++|+.|++.++
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n   41 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ   41 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSC
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCC
Confidence            334455555554443322 3445566666666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.24  E-value=0.00097  Score=52.23  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=22.1

Q ss_pred             cCCCCccEEEee--ecccchH---HHHHHhhcCCCCcEEEecCc
Q 015025          272 ARSPHLKKLDLV--SVYFADN---EFNHLISKFPSLEDLFVTRC  310 (414)
Q Consensus       272 ~~~~~L~~L~l~--~~~~~~~---~~~~~~~~~~~L~~L~l~~c  310 (414)
                      ...++|+.++|.  .+.+.+.   .+...+...++|++|++..+
T Consensus        99 ~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          99 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            345666665554  3344443   34444556777777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.52  E-value=0.0029  Score=49.43  Aligned_cols=14  Identities=7%  Similarity=0.228  Sum_probs=6.5

Q ss_pred             cccccEEEEecccc
Q 015025          159 ANSVTNLRLVWCRL  172 (414)
Q Consensus       159 ~~~L~~L~l~~~~l  172 (414)
                      .++|++|++++|.+
T Consensus        43 n~~L~~L~Ls~n~l   56 (167)
T d1pgva_          43 SKHIEKFSLANTAI   56 (167)
T ss_dssp             CSCCCEEECTTSCC
T ss_pred             CCccceeecccccc
Confidence            34444454444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.00076  Score=52.67  Aligned_cols=59  Identities=24%  Similarity=0.075  Sum_probs=33.0

Q ss_pred             cccccEEEEecccccCCc----cccCCCCcceEEceeEEe-chHHHHHHHhcCCcccEEEeeccCC
Q 015025          159 ANSVTNLRLVWCRLEQPF----DSIMLCSLKKLTLERVCL-DEQMVQKLASECPLLEDLCFSNCWG  219 (414)
Q Consensus       159 ~~~L~~L~l~~~~l~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~~~~  219 (414)
                      +++|++|++++|.++...    ....+++|+.|+++++.+ +-..+.. + ..+.|++|.+.+++.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl  127 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCc
Confidence            566677777776655432    123466677777777666 2233332 2 234566666666653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.33  E-value=0.0041  Score=48.45  Aligned_cols=40  Identities=5%  Similarity=0.057  Sum_probs=21.2

Q ss_pred             cCCccEEEEEEe-eecchhHHHhHHHHhccCcceeEEEEEE
Q 015025          361 VPCPWKVSFVCK-GVLNTHWYLKLKKFLGVSKQIESLKLSL  400 (414)
Q Consensus       361 ~~~L~~l~i~~~-~~~~~~~~~~l~~~l~~~~~L~~L~i~~  400 (414)
                      .++|+.++|..+ ...++.....+-..++..+.|++|++++
T Consensus       101 ~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         101 NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             CccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            445666655522 2333333445555566666777666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.0031  Score=48.98  Aligned_cols=79  Identities=18%  Similarity=0.128  Sum_probs=56.1

Q ss_pred             cCceeeEEEeeeCCCcc-ccCCccccccccccEEEEecccccCCc--cccCCCCcceEEceeEEec------hHHHHHHH
Q 015025          133 NGVRELDFENITDENTV-YTLPQAIFSANSVTNLRLVWCRLEQPF--DSIMLCSLKKLTLERVCLD------EQMVQKLA  203 (414)
Q Consensus       133 ~~l~~L~~~l~~~~~~~-~~l~~~l~~~~~L~~L~l~~~~l~~~~--~~~~l~~L~~L~L~~~~~~------~~~l~~ll  203 (414)
                      +++++|+  +..+.-.. ..++..+..+++|+.|++++|.+....  .......|+.|++.++++.      ......++
T Consensus        65 ~~L~~L~--Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          65 PELLSLN--LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             TTCCCCC--CCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             CCCCEee--CCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            6888888  65543332 234445566899999999999987644  2334567999999998772      24556777


Q ss_pred             hcCCcccEEE
Q 015025          204 SECPLLEDLC  213 (414)
Q Consensus       204 ~~~p~Le~L~  213 (414)
                      ..+|+|+.|+
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            8899999874