Citrus Sinensis ID: 015028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MSITAIALTIATILAGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVIYPYIDAPVKISHRIENTTLSPSYPESLSP
cHHHHHHHHHHHHHHHHHcccccEEEcccccccccccEEEEEEcccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHcHHHHHHHHHHHccccEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHccccEEEEEcccHHHHHHHHHcccEEEEEEEcccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccccc
cHHHHHHHHHHHHHHHHccccHHHccccccccccccccEEEEEEccccccccEEEHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHccHHHHHHHHHHHHcccEEEcccccccEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEccHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccEEEEEcccccccccHHHHcccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHcccccccEEEccEcccEcccccEccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
MSITAIALTIATILAGVINGKSEYIAYnttagivpdkinvhlvphshddvgwlktVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKglvdsgqlefinggmcmhdeasphyidmidqttlghwfikdsfgklprvgwqidpfghSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWrgskslgsssqiftgifprhydppdgftfeindvsppiqddvllfDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKdgrvnalystpsiytdaknaaneewplktedffpyadhpnaywtgyftsrpalkGYVRMMSGYYLSGLVViypyidapvkishrienttlspsypeslsp
MSITAIALTIATILAGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLkeknlevvwrgskslgsssqIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVIYPYIDAPVKISHRienttlspsypeslsp
MSitaialtiatilaGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVIYPYIDAPVKISHRIENTTLSPSYPESLSP
**ITAIALTIATILAGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVIYPYIDAPVKISHRI***************
**ITAIALTIATILAGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVIYPYIDAPVK*******T*LSPS*P*****
MSITAIALTIATILAGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVIYPYIDAPVKISHRIENTTL**********
MSITAIALTIATILAGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVIYPYIDAPVKISHRIENTTLSPSYPE*L**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSITAIALTIATILAGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVIYPYIDAPVKISHRIENTTLSPSYPESLSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
P34098 1010 Lysosomal alpha-mannosida yes no 0.799 0.327 0.547 1e-104
Q8VHC8 1007 Lysosomal alpha-mannosida yes no 0.838 0.344 0.509 1e-103
Q60HE9 1012 Lysosomal alpha-mannosida N/A no 0.838 0.342 0.512 1e-101
O00754 1011 Lysosomal alpha-mannosida yes no 0.838 0.343 0.504 1e-100
Q29451 999 Lysosomal alpha-mannosida yes no 0.838 0.347 0.5 2e-99
O09159 1013 Lysosomal alpha-mannosida yes no 0.838 0.342 0.495 3e-99
O46432 1007 Lysosomal alpha-mannosida N/A no 0.833 0.342 0.513 3e-99
Q54KN4 994 Alpha-mannosidase F OS=Di no no 0.794 0.330 0.344 4e-52
Q28949 995 Epididymis-specific alpha no no 0.823 0.342 0.345 6e-51
Q9Y2E5 1009 Epididymis-specific alpha no no 0.828 0.339 0.359 8e-50
>sp|P34098|MANA_DICDI Lysosomal alpha-mannosidase OS=Dictyostelium discoideum GN=manA PE=1 SV=2 Back     alignment and function desciption
 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/338 (54%), Positives = 234/338 (69%), Gaps = 7/338 (2%)

Query: 38  INVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMA 97
           +NVH+V H+HDDVGWLKTVD+YY G+N SI  A VQ  LD+ I+ L  +  RKFIYVE+A
Sbjct: 42  LNVHIVAHTHDDVGWLKTVDEYYYGSNMSIAFAGVQYTLDTAITCLLANPERKFIYVEIA 101

Query: 98  FFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDS 157
           FFQRWW +QS  M+  VKGLV+SGQLEFINGG CM+DEA+ +Y D IDQ TLGH F+ ++
Sbjct: 102 FFQRWWDEQSTTMQNIVKGLVESGQLEFINGGYCMNDEATTYYDDTIDQMTLGHQFLWEN 161

Query: 158 FGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSK 217
           FG +P++GW IDPFGHSA QA + G +LGFD+    R+DYQD   RL+ K +E +WR ++
Sbjct: 162 FGVMPKIGWHIDPFGHSATQARIFG-QLGFDAFIIGRMDYQDIEARLENKQMEFMWRSTQ 220

Query: 218 SLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQA 277
           S    +Q+FT +    Y  PDGF FE  D   PIQDD  LFD NV+ R   F   AL  A
Sbjct: 221 ST-PENQVFTSVLRAMYCTPDGFNFEQGD--DPIQDDPNLFDNNVDSRAEQFTQVALEYA 277

Query: 278 NVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGR---VNALYSTPSIYTDAKNA 334
              RTN+++   G DF Y  A  +++ +DK I ++N +     +N LYSTPSIY DA N 
Sbjct: 278 THYRTNNVLIPFGCDFAYLNAQMYYKNIDKLIAHINSNPDKYGLNLLYSTPSIYIDAVND 337

Query: 335 ANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVR 372
           AN  W +KT+D FPYAD+  +YWTGYF SRPALKGYVR
Sbjct: 338 ANLVWEVKTDDLFPYADNEFSYWTGYFVSRPALKGYVR 375

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 4
>sp|Q8VHC8|MA2B1_CAVPO Lysosomal alpha-mannosidase OS=Cavia porcellus GN=MAN2B1 PE=1 SV=1 Back     alignment and function description
>sp|Q60HE9|MA2B1_MACFA Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1 Back     alignment and function description
>sp|O00754|MA2B1_HUMAN Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3 Back     alignment and function description
>sp|Q29451|MA2B1_BOVIN Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3 Back     alignment and function description
>sp|O09159|MA2B1_MOUSE Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=4 Back     alignment and function description
>sp|O46432|MA2B1_FELCA Lysosomal alpha-mannosidase OS=Felis catus GN=MAN2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q54KN4|MANF_DICDI Alpha-mannosidase F OS=Dictyostelium discoideum GN=manF PE=3 SV=1 Back     alignment and function description
>sp|Q28949|MA2B2_PIG Epididymis-specific alpha-mannosidase OS=Sus scrofa GN=MAN2B2 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y2E5|MA2B2_HUMAN Epididymis-specific alpha-mannosidase OS=Homo sapiens GN=MAN2B2 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
255543553 1016 lysosomal alpha-mannosidase, putative [R 0.920 0.375 0.863 0.0
357508427 1022 Lysosomal alpha-mannosidase [Medicago tr 0.908 0.367 0.875 0.0
356570259 1023 PREDICTED: lysosomal alpha-mannosidase-l 0.886 0.358 0.880 0.0
359488551 1027 PREDICTED: lysosomal alpha-mannosidase-l 0.913 0.368 0.854 0.0
296082270 1013 unnamed protein product [Vitis vinifera] 0.905 0.370 0.858 0.0
224065294 1020 predicted protein [Populus trichocarpa] 0.871 0.353 0.905 0.0
297814904 1018 glycosyl hydrolase family 38 protein [Ar 0.905 0.368 0.848 0.0
15231611 1019 alpha-mannosidase [Arabidopsis thaliana] 0.915 0.371 0.835 0.0
186510450 943 alpha-mannosidase [Arabidopsis thaliana] 0.915 0.401 0.835 0.0
227202780 947 AT3G26720 [Arabidopsis thaliana] 0.915 0.400 0.835 0.0
>gi|255543553|ref|XP_002512839.1| lysosomal alpha-mannosidase, putative [Ricinus communis] gi|223547850|gb|EEF49342.1| lysosomal alpha-mannosidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/381 (86%), Positives = 353/381 (92%)

Query: 1   MSITAIALTIATILAGVINGKSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYY 60
           M I      +   LAG+   +S+YI YNTT  +VP KINVHLVPHSHDDVGWLKTVDQYY
Sbjct: 1   MKIIYSLFFLTIYLAGICFTESKYIDYNTTGRVVPGKINVHLVPHSHDDVGWLKTVDQYY 60

Query: 61  VGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDS 120
            G NN+IRGACVQNVLDSVIS+LFEDKNRKFIYVEMAFFQRWWRQQS AMKVKVK LV+S
Sbjct: 61  FGGNNTIRGACVQNVLDSVISSLFEDKNRKFIYVEMAFFQRWWRQQSDAMKVKVKELVNS 120

Query: 121 GQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYL 180
           GQLEFINGGMCMHDEA+PHYID+IDQTTLGH FIKD FG+LPRVGWQIDPFGHSAVQAYL
Sbjct: 121 GQLEFINGGMCMHDEATPHYIDLIDQTTLGHKFIKDEFGQLPRVGWQIDPFGHSAVQAYL 180

Query: 181 LGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGF 240
           LG+ELGFDSL+FARIDYQDRAKRLKEK LEV+W+GS SLGSSSQIFTGIFPRHYDPPDGF
Sbjct: 181 LGSELGFDSLFFARIDYQDRAKRLKEKTLEVIWQGSTSLGSSSQIFTGIFPRHYDPPDGF 240

Query: 241 TFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANS 300
           TFE+NDVSPPIQDDVLLFDYNV+ERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANS
Sbjct: 241 TFEVNDVSPPIQDDVLLFDYNVQERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANS 300

Query: 301 WFRQMDKFIHYVNKDGRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGY 360
           WFRQ+DKFIHYVN+DGRVNALYSTPSIYTDAK AA+E+WP+KTEDFFPYADHPNAYWTGY
Sbjct: 301 WFRQIDKFIHYVNEDGRVNALYSTPSIYTDAKYAADEQWPIKTEDFFPYADHPNAYWTGY 360

Query: 361 FTSRPALKGYVRMMSGYYLSG 381
           FTSRPA KGYVR+MSGYYL+ 
Sbjct: 361 FTSRPAFKGYVRIMSGYYLAA 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357508427|ref|XP_003624502.1| Lysosomal alpha-mannosidase [Medicago truncatula] gi|355499517|gb|AES80720.1| Lysosomal alpha-mannosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356570259|ref|XP_003553307.1| PREDICTED: lysosomal alpha-mannosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|359488551|ref|XP_002276199.2| PREDICTED: lysosomal alpha-mannosidase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082270|emb|CBI21275.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065294|ref|XP_002301760.1| predicted protein [Populus trichocarpa] gi|222843486|gb|EEE81033.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297814904|ref|XP_002875335.1| glycosyl hydrolase family 38 protein [Arabidopsis lyrata subsp. lyrata] gi|297321173|gb|EFH51594.1| glycosyl hydrolase family 38 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15231611|ref|NP_189306.1| alpha-mannosidase [Arabidopsis thaliana] gi|1888357|emb|CAA66821.1| alpha-mannosidase [Arabidopsis thaliana] gi|1890154|emb|CAA72432.1| alpha-mannosidase precursor [Arabidopsis thaliana] gi|11994305|dbj|BAB01735.1| alpha-mannosidase [Arabidopsis thaliana] gi|14517403|gb|AAK62592.1| AT3g26720/MLJ15_12 [Arabidopsis thaliana] gi|21360397|gb|AAM47314.1| AT3g26720/MLJ15_12 [Arabidopsis thaliana] gi|332643682|gb|AEE77203.1| alpha-mannosidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186510450|ref|NP_001118706.1| alpha-mannosidase [Arabidopsis thaliana] gi|332643683|gb|AEE77204.1| alpha-mannosidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|227202780|dbj|BAH56863.1| AT3G26720 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
TAIR|locus:2090817 1019 AT3G26720 [Arabidopsis thalian 0.879 0.357 0.868 5.7e-178
TAIR|locus:2159143 1024 AT5G13980 [Arabidopsis thalian 0.881 0.356 0.759 7.2e-155
TAIR|locus:2156857 1047 AT5G66150 [Arabidopsis thalian 0.862 0.340 0.691 4.9e-140
ZFIN|ZDB-GENE-050327-52 982 man2b1 "mannosidase, alpha, cl 0.852 0.359 0.520 1.7e-100
DICTYBASE|DDB_G0292206 1010 manA "alpha-mannosidase" [Dict 0.847 0.347 0.527 5.2e-97
UNIPROTKB|G5E928 1010 MAN2B1 "Mannosidase, alpha, cl 0.835 0.342 0.507 4.8e-94
UNIPROTKB|O00754 1011 MAN2B1 "Lysosomal alpha-mannos 0.835 0.342 0.505 7.8e-94
RGD|3039 1009 Man2b1 "mannosidase, alpha, cl 0.835 0.342 0.494 2.7e-93
UNIPROTKB|F1MMX7 999 MAN2B1 "Lysosomal alpha-mannos 0.835 0.346 0.507 3.4e-93
MGI|MGI:107286 1013 Man2b1 "mannosidase 2, alpha B 0.835 0.341 0.5 4.3e-93
TAIR|locus:2090817 AT3G26720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 317/365 (86%), Positives = 338/365 (92%)

Query:    17 VING-KSEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNV 75
             VI G  SEYI YNT   IVP+KINVHLVPHSHDDVGWLKTVDQYYVG+NNSIRGACVQNV
Sbjct:    16 VIGGVTSEYIEYNTKPRIVPEKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIRGACVQNV 75

Query:    76 LDSVISALFEDKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDE 135
             LDSVI++L +D+NRKFIYVEMAFFQRWWRQQS A KVKVK LVDSGQLEFINGGMCMHDE
Sbjct:    76 LDSVIASLLDDENRKFIYVEMAFFQRWWRQQSNAKKVKVKKLVDSGQLEFINGGMCMHDE 135

Query:   136 ASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARI 195
             A+PHYIDMIDQTTLGH FIK  FG++PRVGWQIDPFGHSAVQAYLLGAE GFDSL+FARI
Sbjct:   136 ATPHYIDMIDQTTLGHQFIKTEFGQVPRVGWQIDPFGHSAVQAYLLGAEFGFDSLFFARI 195

Query:   196 DYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDV 255
             DYQDRAKRL+EK LEV+W+GSKSLGSSSQIFTG+FPRHYDPP+GFTFEINDVS PIQDD 
Sbjct:   196 DYQDRAKRLREKTLEVIWQGSKSLGSSSQIFTGVFPRHYDPPEGFTFEINDVSAPIQDDP 255

Query:   256 LLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKD 315
             LLFDYNV+ERVNDFVAAALAQ NVTRTNHIMWLMGTDFRYQYA SWFRQ+DKFIHYVNKD
Sbjct:   256 LLFDYNVQERVNDFVAAALAQVNVTRTNHIMWLMGTDFRYQYAYSWFRQIDKFIHYVNKD 315

Query:   316 GRVNALYSTPSIYTDAKNAANEEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMS 375
             GR+N LYSTPSIYTDAK AANE WPLKT+DFFPYAD PNAYWTGYFTSRPA K YVR +S
Sbjct:   316 GRLNVLYSTPSIYTDAKYAANESWPLKTDDFFPYADKPNAYWTGYFTSRPAFKKYVRDLS 375

Query:   376 GYYLS 380
             GYYL+
Sbjct:   376 GYYLA 380
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0004559 "alpha-mannosidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006013 "mannose metabolic process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0015923 "mannosidase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2159143 AT5G13980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156857 AT5G66150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050327-52 man2b1 "mannosidase, alpha, class 2B, member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292206 manA "alpha-mannosidase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G5E928 MAN2B1 "Mannosidase, alpha, class 2B, member 1, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O00754 MAN2B1 "Lysosomal alpha-mannosidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|3039 Man2b1 "mannosidase, alpha, class 2B, member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMX7 MAN2B1 "Lysosomal alpha-mannosidase D peptide" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:107286 Man2b1 "mannosidase 2, alpha B1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
cd10810278 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic 0.0
cd00451258 cd00451, GH38N_AMII_euk, N-terminal catalytic doma 1e-114
pfam01074269 pfam01074, Glyco_hydro_38, Glycosyl hydrolases fam 1e-100
cd10809340 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal 6e-79
PLN02701 1050 PLN02701, PLN02701, alpha-mannosidase 2e-60
cd11666344 cd11666, GH38N_Man2A1, N-terminal catalytic domain 1e-57
cd10811326 cd10811, GH38N_AMII_Epman_like, N-terminal catalyt 4e-57
cd11667344 cd11667, GH38N_Man2A2, N-terminal catalytic domain 4e-55
cd10786251 cd10786, GH38N_AMII_like, N-terminal catalytic dom 8e-53
cd10789252 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catal 3e-07
pfam0926182 pfam09261, Alpha-mann_mid, Alpha mannosidase, midd 1e-05
cd10785203 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain 3e-05
smart0087279 smart00872, Alpha-mann_mid, Alpha mannosidase, mid 8e-05
cd10812258 cd10812, GH38N_AMII_ScAms1_like, N-terminal cataly 0.002
>gnl|CDD|212121 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information 
 Score =  522 bits (1347), Expect = 0.0
 Identities = 180/279 (64%), Positives = 214/279 (76%), Gaps = 3/279 (1%)

Query: 38  INVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMA 97
           +NVHLVPH+HDDVGWLKTVDQYY G+NNSI+ A VQ +LDSVI  L ++ +RKFIYVE+A
Sbjct: 1   LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIA 60

Query: 98  FFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDS 157
           FF RWWR+QS+  + KVK LV +GQLEFINGG CM+DEA+ HY D+IDQ TLGH F+KD+
Sbjct: 61  FFSRWWREQSEDTRQKVKKLVKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDT 120

Query: 158 FGK--LPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRG 215
           FG+   PRVGWQIDPFGHS  QA L  A++GFD L+F RIDYQD+A+RLK K +E +WRG
Sbjct: 121 FGECARPRVGWQIDPFGHSRTQASLF-AQMGFDGLFFGRIDYQDKAQRLKNKEMEFIWRG 179

Query: 216 SKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNVEERVNDFVAAALA 275
           S SLG  + IFTG+   HY PP GF F+I     PIQDD  L DYNV+ERV+DFV  A  
Sbjct: 180 SPSLGPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDPNLEDYNVDERVDDFVQYAKE 239

Query: 276 QANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNK 314
           QA   RTNHIM  MG+DF+YQ A  WF+ MDK I YVNK
Sbjct: 240 QAQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVNK 278

The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base. Length = 278
>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain Back     alignment and domain information
>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase Back     alignment and domain information
>gnl|CDD|212131 cd11666, GH38N_Man2A1, N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212122 cd10811, GH38N_AMII_Epman_like, N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212098 cd10786, GH38N_AMII_like, N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212101 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|220157 pfam09261, Alpha-mann_mid, Alpha mannosidase, middle domain Back     alignment and domain information
>gnl|CDD|212097 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins Back     alignment and domain information
>gnl|CDD|214875 smart00872, Alpha-mann_mid, Alpha mannosidase, middle domain Back     alignment and domain information
>gnl|CDD|212123 cd10812, GH38N_AMII_ScAms1_like, N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
KOG1959 996 consensus Glycosyl hydrolase, family 38 - alpha-ma 100.0
PLN02701 1050 alpha-mannosidase 100.0
KOG1958 1129 consensus Glycosyl hydrolase, family 38 - alpha-ma 100.0
PRK09819 875 alpha-mannosidase; Provisional 100.0
PF01074275 Glyco_hydro_38: Glycosyl hydrolases family 38 N-te 100.0
KOG4342 1078 consensus Alpha-mannosidase [Carbohydrate transpor 100.0
COG0383 943 AMS1 Alpha-mannosidase [Carbohydrate transport and 99.98
COG0383 943 AMS1 Alpha-mannosidase [Carbohydrate transport and 99.84
PF03065360 Glyco_hydro_57: Glycosyl hydrolase family 57; Inte 99.0
smart0087279 Alpha-mann_mid Alpha mannosidase, middle domain. M 98.58
PF0926180 Alpha-mann_mid: Alpha mannosidase, middle domain; 98.57
COG1543504 Uncharacterized conserved protein [Function unknow 97.36
PF01522123 Polysacc_deac_1: Polysaccharide deacetylase; Inter 96.4
TIGR03212297 uraD_N-term-dom putative urate catabolism protein. 96.35
TIGR02764191 spore_ybaN_pdaB polysaccharide deacetylase family 94.86
TIGR03006265 pepcterm_polyde polysaccharide deactylase family p 94.83
TIGR02884224 spore_pdaA delta-lactam-biosynthetic de-N-acetylas 94.81
COG1449 615 Alpha-amylase/alpha-mannosidase [Carbohydrate tran 93.74
TIGR02873268 spore_ylxY probable sporulation protein, polysacch 93.55
PRK14582 671 pgaB outer membrane N-deacetylase; Provisional 92.75
PRK14581 672 hmsF outer membrane N-deacetylase; Provisional 89.11
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.3e-92  Score=730.57  Aligned_cols=361  Identities=62%  Similarity=1.061  Sum_probs=352.3

Q ss_pred             eeeecCCCCCCCCceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHHHH
Q 015028           24 YIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQRWW  103 (414)
Q Consensus        24 ~~~~~~~~~~~~~~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~w~  103 (414)
                      -.+||+|+...+.+++||+|||||.|+||++|+++||.|+++.|++.+|++|+++|++.|.+||++||+.+|++||.+||
T Consensus        23 ~~~y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW  102 (996)
T KOG1959|consen   23 RAGYNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWW  102 (996)
T ss_pred             hhccCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHH
Confidence            33499999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhC--CCCceeeecCCCCCchhHHHHH
Q 015028          104 RQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFG--KLPRVGWQIDPFGHSAVQAYLL  181 (414)
Q Consensus       104 ~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG--~~~~~~w~pD~FGhs~~lPqil  181 (414)
                      .++++++++.||+||++|||||+||+|+|+|||.+++.++|+|++.|++||.++||  .+|++|||+||||||+.+|.||
T Consensus       103 ~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslf  182 (996)
T KOG1959|consen  103 NEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLF  182 (996)
T ss_pred             HhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999  8999999999999999999999


Q ss_pred             HhhcCCcEEEEeecchhhHhhhhcCCcceEEEEeCCCCCCCCeeEEeecCCCCCCCCCCCcccCCCCCCccCCcccccch
Q 015028          182 GAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYN  261 (414)
Q Consensus       182 ~~~~Gi~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~~Y~~~~~~~~~~~~~~~~~~d~~~~~~~n  261 (414)
                       ++||+++.+|.|+++++|..|...+.+||+|+|++++++.++|||++|+++|++|.+|+|+..+.+.|++|++.+.++|
T Consensus       183 -AqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~N  261 (996)
T KOG1959|consen  183 -AQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYN  261 (996)
T ss_pred             -HHhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCCCCCCCCCCCCcc
Confidence             9999999999999999999999999999999999999999999999999999999999999999889999999889999


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCCCchhHHHHHHHHHHHHhcC---C-CceEEEcChHHHHHHHHhcCC
Q 015028          262 VEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKD---G-RVNALYSTPSIYTDAKNAANE  337 (414)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~t~~iL~~~G~D~~~~~a~~~~~~l~~li~~~N~~---~-~~~i~~sT~~~yf~~l~~~~~  337 (414)
                      ++++++.|++.++.++..++|||||+|+|+||.|.+|..||.||++||+++|++   + .+++.||||+.|++++++.+.
T Consensus       262 VkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~  341 (996)
T KOG1959|consen  262 VKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQ  341 (996)
T ss_pred             HHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999964   3 699999999999999999999


Q ss_pred             CCCcccccCCCCCCCCCCcccceecchhhHHHHHHHHHHHHHHHhhcc
Q 015028          338 EWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVVI  385 (414)
Q Consensus       338 ~lp~~~Ge~~~~~~~~~~ywtG~ysSr~~lK~~~R~~e~~L~~ae~l~  385 (414)
                      .||+.+.|||||++++|.||||||||||.+|++.|.+...|.+|+.|.
T Consensus       342 Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~  389 (996)
T KOG1959|consen  342 TWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLS  389 (996)
T ss_pred             cccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999874

>PLN02701 alpha-mannosidase Back     alignment and domain information
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09819 alpha-mannosidase; Provisional Back     alignment and domain information
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain Back     alignment and domain information
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold Back     alignment and domain information
>COG1543 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase Back     alignment and domain information
>TIGR03212 uraD_N-term-dom putative urate catabolism protein Back     alignment and domain information
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB Back     alignment and domain information
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase Back     alignment and domain information
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family Back     alignment and domain information
>PRK14582 pgaB outer membrane N-deacetylase; Provisional Back     alignment and domain information
>PRK14581 hmsF outer membrane N-deacetylase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
1o7d_A298 The Structure Of The Bovine Lysosomal A-Mannosidase 9e-82
1qwn_A 1045 Golgi Alpha-Mannosidase Ii Covalent Intermediate Co 3e-43
3dx3_A 1045 Golgi Alpha-Mannosidase Ii In Complex With Mannosta 3e-43
1hxk_A 1015 Golgi Alpha-Mannosidase Ii In Complex With Deoxyman 3e-43
1ps3_A 1045 Golgi Alpha-mannosidase Ii In Complex With Kifunens 4e-43
1qwu_A 1045 Golgi Alpha-Mannosidase Ii D341n Mutant Complex Wit 1e-42
3cv5_A 1045 Golgi Mannosidase Ii D204a Catalytic Nucleophile Mu 3e-42
1hty_A 1015 Golgi Alpha-Mannosidase Ii Length = 1015 4e-41
1o7d_B84 The Structure Of The Bovine Lysosomal A-Mannosidase 3e-14
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 298 Back     alignment and structure 
Iteration: 1

 Score =  300 bits (768), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 146/298 (48%), Positives = 196/298 (65%), Gaps = 4/298 (1%)
Query: 26  AYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFE 85
            Y T   + PD +NVHLVPH+HDDVGWLKTVDQY+ G  N+I+ A VQ +LDSVIS+L  
Sbjct: 2   GYKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLA 61
Query: 86  DKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMID 145
           +  R+FIYVE+AFF RWWRQQ+ A +  V+ LV  G+LEF NGG  M+DEA+ HY  +ID
Sbjct: 62  NPTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIID 121
Query: 146 QTTLGHWFIKDSFGK--LPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKR 203
           Q TLG  F++++FG    PRV W IDPFGHS  QA L  A++GFD  +F R+DYQD+  R
Sbjct: 122 QMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLF-AQMGFDGFFFGRLDYQDKKVR 180
Query: 204 LKEKNLEVVWRGSKSLG-SSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNV 262
            K   +E VWR S SL   ++ +FT + P  Y+PP+G  +++     P+ +D    +YN 
Sbjct: 181 KKTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNA 240
Query: 263 EERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNA 320
           +E V  F+  A  Q  + RT H +  MG+DF+Y+ AN+WF+ +DK I  VN   R N 
Sbjct: 241 KELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQRANG 298
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex With 5- Fluoro-Gulosyl-Fluoride Length = 1045 Back     alignment and structure
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin Analog (1r,2r, 3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol Length = 1045 Back     alignment and structure
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin Length = 1015 Back     alignment and structure
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine Length = 1045 Back     alignment and structure
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With 5-F-Guloside Length = 1045 Back     alignment and structure
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant Complex With 3alpha,6alpha-Mannopentaose Length = 1045 Back     alignment and structure
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii Length = 1015 Back     alignment and structure
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 84 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
1o7d_A298 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 1e-121
3bvx_A 1045 Alpha-mannosidase 2; family 38 glycoysl hydrolase, 1e-115
3lvt_A 899 Glycosyl hydrolase, family 38; PSI, MCSG, structur 7e-65
2wyh_A 923 Alpha-mannosidase; hydrolase, glycosidase, glycosi 4e-64
1o7d_B84 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 2e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1k1x_A 659 4-alpha-glucanotransferase; 2.40A {Thermococcus li 2e-05
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Length = 298 Back     alignment and structure
 Score =  352 bits (905), Expect = e-121
 Identities = 146/298 (48%), Positives = 196/298 (65%), Gaps = 4/298 (1%)

Query: 26  AYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFE 85
            Y T   + PD +NVHLVPH+HDDVGWLKTVDQY+ G  N+I+ A VQ +LDSVIS+L  
Sbjct: 2   GYKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLA 61

Query: 86  DKNRKFIYVEMAFFQRWWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMID 145
           +  R+FIYVE+AFF RWWRQQ+ A +  V+ LV  G+LEF NGG  M+DEA+ HY  +ID
Sbjct: 62  NPTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIID 121

Query: 146 QTTLGHWFIKDSFGK--LPRVGWQIDPFGHSAVQAYLLGAELGFDSLYFARIDYQDRAKR 203
           Q TLG  F++++FG    PRV W IDPFGHS  QA L  A++GFD  +F R+DYQD+  R
Sbjct: 122 QMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLF-AQMGFDGFFFGRLDYQDKKVR 180

Query: 204 LKEKNLEVVWRGSKSLG-SSSQIFTGIFPRHYDPPDGFTFEINDVSPPIQDDVLLFDYNV 262
            K   +E VWR S SL   ++ +FT + P  Y+PP+G  +++     P+ +D    +YN 
Sbjct: 181 KKTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNA 240

Query: 263 EERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSWFRQMDKFIHYVNKDGRVNA 320
           +E V  F+  A  Q  + RT H +  MG+DF+Y+ AN+WF+ +DK I  VN   R N 
Sbjct: 241 KELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQRANG 298
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Length = 1045 Back     alignment and structure
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Length = 899 Back     alignment and structure
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Length = 923 Back     alignment and structure
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1 Length = 84 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* Length = 659 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
3bvx_A 1045 Alpha-mannosidase 2; family 38 glycoysl hydrolase, 100.0
1o7d_A298 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 100.0
2wyh_A 923 Alpha-mannosidase; hydrolase, glycosidase, glycosi 100.0
3lvt_A 899 Glycosyl hydrolase, family 38; PSI, MCSG, structur 100.0
1k1x_A 659 4-alpha-glucanotransferase; 2.40A {Thermococcus li 99.87
1o7d_B84 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 99.81
3n98_A 562 Alpha-amylase, GH57 family; GH57 family member, br 98.9
3p0b_A540 TT1467 protein; glycoside hydrolase GH57, glycogen 98.86
2b5d_X528 Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2. 98.85
3rxz_A300 Polysaccharide deacetylase; structural genomics, P 96.21
3s6o_A321 Polysaccharide deacetylase family protein; ssgcid, 95.65
3cl6_A308 PUUE allantoinase; URIC acid, nitrogen fixation, h 94.37
2cc0_A195 Acetyl-xylan esterase; hydrolase, carbohydrate est 93.29
3qbu_A326 Putative uncharacterized protein; metallo enzyme, 93.17
2y8u_A230 Chitin deacetylase; hydrolase; 1.99A {Emericella n 93.14
2j13_A247 Polysaccharide deacetylase; family 4, peptidoglyca 91.22
3vus_A268 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; 90.74
1ny1_A240 Probable polysaccharide deacetylase PDAA; structur 89.2
2c71_A216 Glycoside hydrolase, family 11\:clostridium cellul 85.72
2vyo_A254 ECU11_0510, chitooligosaccharide deacetylase; CE4 84.21
2iw0_A254 Chitin deacetylase; hydrolase, chitin DE-N-acetyla 84.19
4f9d_A 618 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; 83.45
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Back     alignment and structure
Probab=100.00  E-value=3.2e-79  Score=685.92  Aligned_cols=362  Identities=31%  Similarity=0.601  Sum_probs=318.5

Q ss_pred             ceeeeecCCCCCCCCceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHH
Q 015028           22 SEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQR  101 (414)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~  101 (414)
                      +-.|.|+.+.-....+++||+|||||||+||+||+++|+.        ..+.+++++||++|++||+++|+|+|+++|++
T Consensus        65 ~~~~~~~~~~~~~~~~~~V~lV~HsH~D~gWl~t~~e~~~--------~~~~~~~~~vl~~L~~~p~~~F~~~e~~~l~~  136 (1045)
T 3bvx_A           65 GWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRHLHDNPEMKFIWAEISYFAR  136 (1045)
T ss_dssp             SCCCCCCGGGSBTTBCEEEEEEEEEECCSSSSSCHHHHHH--------HTHHHHHHHHHHHHHHCTTCCEEECCHHHHHH
T ss_pred             cchhhhhccccCCCCceEEEEEecCCCCccccchHHHhhh--------HHHHHHHHHHHHHHHHCCCcEEEEecHHHHHH
Confidence            4455565433333448999999999999999999999987        57888999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHH
Q 015028          102 WWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLL  181 (414)
Q Consensus       102 w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil  181 (414)
                      ||++++|+++++||+||++|||||+||||||+||++++|||+||||++|++|++++||+.|++||+||+||||++|||||
T Consensus       137 w~~e~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~~~W~pD~FG~s~~lPqil  216 (1045)
T 3bvx_A          137 FYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYIL  216 (1045)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCSSSBCTHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHhCCCEEEECCccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCceEEcCCCCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcEEEEeecchhhHhhhhcCCcceEEEE----eCCCCCCCCeeEEeecCC-CCCCCC----------CCCcccCC
Q 015028          182 GAELGFDSLYFARIDYQDRAKRLKEKNLEVVWR----GSKSLGSSSQIFTGIFPR-HYDPPD----------GFTFEIND  246 (414)
Q Consensus       182 ~~~~Gi~~~v~~R~~~~~~~~~~~~~~~eF~W~----g~d~~~~gs~V~th~~~~-~Y~~~~----------~~~~~~~~  246 (414)
                       +++||++++++|++|++++.++..++++|+|+    |+|    ||+||||++|. +|+.+.          .|+++...
T Consensus       217 -~~~Gi~~~~~~R~~~~~~~~~~~~k~~eF~W~~~w~~~d----Gs~Ilt~~~p~~~Y~~~~~~gp~~~~c~~fdf~~l~  291 (1045)
T 3bvx_A          217 -QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKG----DTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMG  291 (1045)
T ss_dssp             -HTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSC----TTCEEEEECCSSCSSGGGTSSSCHHHHGGGCGGGSS
T ss_pred             -HHcCCCeEEEecccccccccccccCCceEEEeCCCCCCC----CCeEEEEeccccccCcccccCCCccccccccccccc
Confidence             99999999999999999999888889999999    566    99999999994 775321          24443321


Q ss_pred             C---CCCccCC-cccccchHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCCCchhH---HHHHHHHHHHHhcCC--C
Q 015028          247 V---SPPIQDD-VLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSW---FRQMDKFIHYVNKDG--R  317 (414)
Q Consensus       247 ~---~~~~~d~-~~~~~~n~~~~~~~~~~~~~~~~~~~~t~~iL~~~G~D~~~~~a~~~---~~~l~~li~~~N~~~--~  317 (414)
                      .   .++|.++ ..++++|+++++..+++++++.+..++++++|+|+|+||+++++..+   +++++++++++|+.+  .
T Consensus       292 ~~~~~~~~~~~p~~~~~~nv~~r~~~~~~~~~~~~~~~~t~~~l~~~G~d~~~~~~~~~~~~~~n~~~li~~in~~~~~~  371 (1045)
T 3bvx_A          292 SFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFN  371 (1045)
T ss_dssp             TTSCCCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             cccccCcccCCcccccHHHHHHHHHHHHHHHHHhhcccCCCeEEEEecCCCCCcchhhhHHHHHHHHHHHHHHhhCCCCC
Confidence            1   2444433 34567899999999999998888889999999999999999987644   899999999999875  5


Q ss_pred             ceEEEcChHHHHHHHHhcC----CCCCcccccCCCCCCCCCCcccceecchhhHHHHHHHHHHHHHHHhhc-------cC
Q 015028          318 VNALYSTPSIYTDAKNAAN----EEWPLKTEDFFPYADHPNAYWTGYFTSRPALKGYVRMMSGYYLSGLVV-------IY  386 (414)
Q Consensus       318 ~~i~~sT~~~yf~~l~~~~----~~lp~~~Ge~~~~~~~~~~ywtG~ysSr~~lK~~~R~~e~~L~~ae~l-------~~  386 (414)
                      +++++||+++||+++++..    ..||+++|||++|+++.+.||+|||||||++|++||++|.+|++||.|       |.
T Consensus       372 ~~v~~sT~~~yf~~l~~~~~~~~~~lp~~~Ge~~~~~~~~~~yw~G~yTSr~~~K~~nR~~e~~L~~aE~l~ala~~~~~  451 (1045)
T 3bvx_A          372 VQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGM  451 (1045)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCEEETTEECCGGGTSSHHHHHHHHHHHHHHHHHHHHHHTSCCCGG
T ss_pred             ceEEECCHHHHHHHHHhhcccccccCcccCCcccccccCCcccccceecccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8999999999999998753    379999999999998888999999999999999999999999999986       45


Q ss_pred             CCChHHHHhh
Q 015028          387 PYIDAPVKIS  396 (414)
Q Consensus       387 ~y~~~~~~~~  396 (414)
                      .||.+.|+.+
T Consensus       452 ~~~~~~L~~~  461 (1045)
T 3bvx_A          452 ARIEERLEQA  461 (1045)
T ss_dssp             GCHHHHHHHH
T ss_pred             CccHHHHHHH
Confidence            7888877664
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Back     alignment and structure
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Back     alignment and structure
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Back     alignment and structure
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* Back     alignment and structure
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1 Back     alignment and structure
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A* Back     alignment and structure
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A Back     alignment and structure
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4 Back     alignment and structure
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis} Back     alignment and structure
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6 Back     alignment and structure
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A Back     alignment and structure
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 Back     alignment and structure
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori} Back     alignment and structure
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans} Back     alignment and structure
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3 Back     alignment and structure
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli} Back     alignment and structure
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1 Back     alignment and structure
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A Back     alignment and structure
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} Back     alignment and structure
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3 Back     alignment and structure
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
g1o7d.3330 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-manno 1e-119
d3bvua3381 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fru 1e-109
d1k1xa3310 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-te 1e-35
g1o7d.195 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mann 4e-07
d3bvua1111 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fr 7e-07
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 381 Back     information, alignment and structure
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 310 Back     information, alignment and structure
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d3bvua3381 Golgi alpha-mannosidase II {Fruit fly (Drosophila 100.0
g1o7d.3330 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 100.0
d1k1xa3310 4-alpha-glucanotransferase, N-terminal domain {Arc 100.0
d2b5dx2404 Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 98.94
d3bvua1111 Golgi alpha-mannosidase II {Fruit fly (Drosophila 98.87
g1o7d.195 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 98.8
d1ufaa2412 Hypothetical protein TT1467, N-terminal domain {Th 98.6
d1z7aa1301 Hypothetical protein PA1517 {Pseudomonas aeruginos 96.48
d2c1ia1196 Peptidoglycan GlcNAc deacetylase C-terminal domain 94.03
d2cc0a1192 Acetyl-xylan esterase {Streptomyces lividans [TaxI 92.78
d2j13a1235 Putative polysaccharide deacetylase BA0424 {Bacill 92.65
d1ny1a_235 Probable polysaccharide deacetylase PdaA {Bacillus 91.07
d2c71a1204 Xylanase XynA C-terminal domain {Clostridium therm 84.72
d2iw0a1220 Chitin deacetylase {Bean anthracnose fungus (Colle 83.56
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.1e-78  Score=607.14  Aligned_cols=322  Identities=31%  Similarity=0.585  Sum_probs=290.9

Q ss_pred             ceeeeecCCCCCCCCceEEEEeecccCCccccchHhHHhccccccchhHHHHHHHHHHHHHHHcCCCCcEEeechHHHHH
Q 015028           22 SEYIAYNTTAGIVPDKINVHLVPHSHDDVGWLKTVDQYYVGANNSIRGACVQNVLDSVISALFEDKNRKFIYVEMAFFQR  101 (414)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~ihvV~HSH~D~~Wl~t~~ey~~~~~~~~~~~~v~~~l~~vl~~L~~~p~~kF~~~e~~~l~~  101 (414)
                      .-.|.|+.+.-...+|++||||||||+|+||+||+++|++        ..+.++++++|++|+++|++||+++|++++.+
T Consensus        35 ~~~~~~~~~~~~~~~kl~VhlV~HsH~D~gWl~t~~e~~~--------~~~~~il~~~l~~l~~~p~~~F~~~~~~~~~~  106 (381)
T d3bvua3          35 GWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRHLHDNPEMKFIWAEISYFAR  106 (381)
T ss_dssp             SCCCCCCGGGCBTTBCEEEEEEEEEECCSSSSSCHHHHHH--------HTHHHHHHHHHHHHHHCTTCCEEECCHHHHHH
T ss_pred             CcceeechhhcCcCCCcEEEEeCCCCCChhhcCcHHHHHH--------HHHHHHHHHHHHHHHHCCCCEEEEechHHHHH
Confidence            4567888887777899999999999999999999999987        57889999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHHHHCCCeEEecceeeecccCCCChHHHHHHHHHHHHHHHHHhCCCCceeeecCCCCCchhHHHHH
Q 015028          102 WWRQQSKAMKVKVKGLVDSGQLEFINGGMCMHDEASPHYIDMIDQTTLGHWFIKDSFGKLPRVGWQIDPFGHSAVQAYLL  181 (414)
Q Consensus       102 w~~e~~pe~~~~vk~lV~~GRlE~vgG~Wvq~De~l~~gEslIrql~~G~~~l~~~fG~~~~~~w~pD~FGhs~~lPqil  181 (414)
                      ||++.+|+++++||+||++||||||||+|||+||+++++|++||||++|++|++++||+.|++||+|||||||++||+||
T Consensus       107 w~~~~~pe~~~~vk~lV~~GrlEivgg~wv~~De~~~~~es~Irql~~G~~~l~~~fG~~p~~~w~~D~FGhs~~lp~il  186 (381)
T d3bvua3         107 FYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYIL  186 (381)
T ss_dssp             HHTTSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECSSSSBCTHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHCCCEEEeCCeeecccccCCCHHHHHHHHHHHHHHHHHHcCCCCceEEeeCCCCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCcEEEEeecchhhHhhhhcCCcceEEEEeCCCCCCCCeeEEeecCC-CCCCCCCCC----------cccC---CC
Q 015028          182 GAELGFDSLYFARIDYQDRAKRLKEKNLEVVWRGSKSLGSSSQIFTGIFPR-HYDPPDGFT----------FEIN---DV  247 (414)
Q Consensus       182 ~~~~Gi~~~v~~R~~~~~~~~~~~~~~~eF~W~g~d~~~~gs~V~th~~~~-~Y~~~~~~~----------~~~~---~~  247 (414)
                       +++||++++++|+++++++.++..+.++|+|++.+....|++||||+++. +|+.|..+.          +...   ..
T Consensus       187 -~~~Gi~~~~~~R~~~~~~~~~~~~k~lef~w~~~W~~~~~s~ilth~~~~~~Y~~p~~~~~d~~~~~~f~f~~~~~~~~  265 (381)
T d3bvua3         187 -QKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL  265 (381)
T ss_dssp             -HTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEEECCSSCSSGGGTSSSCHHHHGGGCGGGSSTTSC
T ss_pred             -HhcCCCeEEEEecchhhhcccccccccceeecccccCCCCCceeEecccccccCCcccCCCCcccccccccccccccCC
Confidence             99999999999999999999999999999998876555599999999987 577665432          2211   12


Q ss_pred             CCCc-cCCcccccchHHHHHHHHHHHHHHhhhhcCCCceEEEeecCCCCCCchhH---HHHHHHHHHHHhcCC--CceEE
Q 015028          248 SPPI-QDDVLLFDYNVEERVNDFVAAALAQANVTRTNHIMWLMGTDFRYQYANSW---FRQMDKFIHYVNKDG--RVNAL  321 (414)
Q Consensus       248 ~~~~-~d~~~~~~~n~~~~~~~~~~~~~~~~~~~~t~~iL~~~G~D~~~~~a~~~---~~~l~~li~~~N~~~--~~~i~  321 (414)
                      .+|+ .++..++++|++++++.|++++++++..++|++||+|+|+||+++++..+   |+||+++|+++|+.+  .++++
T Consensus       266 ~~p~~~~~~~i~~~nv~~r~~~~~~~~~~~a~~~~tn~vL~p~G~Df~y~~a~~w~~~~~n~~kli~~iN~~~~~~v~i~  345 (381)
T d3bvua3         266 SCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQ  345 (381)
T ss_dssp             CCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEETCSCSHHHHHHHHHHHHHHHHHHHHCGGGCEEEE
T ss_pred             CCCcccCCcccchhHHHHHHHHHHHHHHHHhhccCCCeEEEccccCCCCCccchHHHHHHhHHHHHHHHHhCCCCCeEEE
Confidence            2333 34566788999999999999999999999999999999999999999766   999999999999864  68899


Q ss_pred             EcChHHHHHHHHhc----CCCCCcccccCCCCCCC
Q 015028          322 YSTPSIYTDAKNAA----NEEWPLKTEDFFPYADH  352 (414)
Q Consensus       322 ~sT~~~yf~~l~~~----~~~lp~~~Ge~~~~~~~  352 (414)
                      ||||++||++|++.    +.++|+++||||||+++
T Consensus       346 ~ST~~~Yf~al~~~~~~~~~~~P~~~gDFfpYad~  380 (381)
T d3bvua3         346 FGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADR  380 (381)
T ss_dssp             ECCHHHHHHHHHHHHHTTSCCCCEEESCBCSCBSS
T ss_pred             ECCHHHHHHHHHHHHhhcCCCCCCcCCCCcCCCCC
Confidence            99999999999864    56899999999999975
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Back     information, alignment and structure