Citrus Sinensis ID: 015072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDYEEQVSFSVPPQ
Secondary Structure (PSIPRED)
cccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHHccccccccccEEEEEEccccEEcHHHHHHHHHHHHHHcccEEEcccEEEEEEEccccccccEEEEEccccEEEccEEEEcccccHHHHHHHHccccccccEEEEEEEEEEEcccccccccccccccEEEEcccccEEEccccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEEEcccccccccEEccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccEEEEccEEEEcccccHHHHHHHHHHHHccccEEEccHHHHHHHccccccccccEEEEEccccccccHHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccccEEEEEEEcccEEEEcEEEEEccHHHHHHHHHHccccccEEEEEEEEEEEEccccccccccccccccEEEccccccEEEccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccEEcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccHHHHcccEEEEcccc
Coil and Loop (DISEMBL)
MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFlhhrgsshgesrtiratypedyyhpmvlesSLLWEQAQSEIGYKVYFKAhqfdmgpsenkSLRSVIASCrknsvphqvlDCRQVLQKYsgrieipenwvgvttelggvikptkAVSMFQTLAIKngavlrdntEVKTVLKVKDDVRGGVTVVTSsgeefwgkkcvvTAGAWVGKLVKKIsglelpiqAVETSVCYWrikegdeadyavggdfpsfasygdphvygtpsleypglIKIALHrgylcdpdrrpwgpgplldSLKELIQGRfagrvdssgpaatqlcmysmtpdkdFVIDFLGGELGEDVVvaggfsghgfkmaPVVGRILADLVLSGEAQGVELRHFRIARfkenpkgnvkdyeeqvsfsvppq
Flexible Loop (DISEMBL)
MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLhhrgsshgesrtiRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCrknsvphqvlDCRQVLQKYsgrieipenwvgvTTELGGVIKPTKAVSMFQTLAikngavlrdntevktvlkvkddvrggvtvvtssgeefwgkkcVVTAGAWVGKLVKkisglelpiqaVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRiarfkenpkgnvkdyeeqvsfsvppq
Low Complexity Region (SEG)
MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLkvkddvrggvtvvtssGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDYEEQVSFSVPPQ
Disordered region (IsUnstruct)
******NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRG******RTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDM********RSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF**********************
Disordered Region (DISOPRED)
****GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKEN*******************
Disordered Region (DISEMBL)
MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH********RTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKD************
Disordered Region (DISPRO)
****GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDYEEQVSFSVPPQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDYEEQVSFSVPPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q9SJA7	416	Probable sarcosine oxidas	yes	no	0.992	0.985	0.678	1e-169
Q29RU9	392	Peroxisomal sarcosine oxi	yes	no	0.929	0.979	0.358	3e-62
Q9P0Z9	390	Peroxisomal sarcosine oxi	yes	no	0.912	0.966	0.359	7e-62
P79371	390	Peroxisomal sarcosine oxi	no	no	0.912	0.966	0.354	6e-61
Q9D826	390	Peroxisomal sarcosine oxi	yes	no	0.924	0.979	0.341	3e-58
P23342	387	Monomeric sarcosine oxida	N/A	no	0.866	0.925	0.342	1e-45
P40859	390	Monomeric sarcosine oxida	N/A	no	0.891	0.943	0.337	2e-43
P40873	389	Monomeric sarcosine oxida	N/A	no	0.881	0.935	0.324	1e-40
A9N5Q2	372	N-methyl-L-tryptophan oxi	yes	no	0.859	0.954	0.294	2e-38
B4TET2	372	N-methyl-L-tryptophan oxi	yes	no	0.859	0.954	0.291	3e-38

>sp|Q9SJA7|SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1

 Score =  593 bits (1529), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/414 (67%), Positives = 340/414 (82%), Gaps = 4/414 (0%)

Query: 1   MEFSGE-NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
           ME+S +  FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY
Sbjct: 1   MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 60

Query: 60  PEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV 119
           PEDYY+ MV ES+ LW  AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+ + H+V
Sbjct: 61  PEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRV 120

Query: 120 LDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTV 179
           +D   V + +SGRI IPENW+GV+TELGG+IKPTKAVSMFQTLAI +GA+LRDNT+V  +
Sbjct: 121 MDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGAILRDNTKVANI 180

Query: 180 LKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRI 239
            K   +   GV V T  G++F+GKKC+VTAGAW+ KLVK ++G++ P++ +ET+VCYWRI
Sbjct: 181 -KRDGESGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWRI 239

Query: 240 KEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLL 299
           KEG E  + + G+FP+FASYG P+VYGTPSLEYPGLIK+A+H GY CDPD+RPWGPG  L
Sbjct: 240 KEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVKL 299

Query: 300 DSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           + LKE I+ RF G VDS GP ATQLCMYSMTPD+DFVIDFLGGE G DVVV GGFSGHGF
Sbjct: 300 EELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHGF 359

Query: 360 KMAPVVGRILADLVLSGEA--QGVELRHFRIARFKENPKGNVKDYEEQVSFSVP 411
           KMAP VGRILAD+ +  EA   GVE++ F + RF++NPKGN K+Y +QV   VP
Sbjct: 360 KMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKGNAKEYPDQVILDVP 413

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 3EC: .EC: 1

>sp|Q29RU9|SOX_BOVIN Peroxisomal sarcosine oxidase OS=Bos taurus GN=PIPOX PE=2 SV=2

 Score =  239 bits (610), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 214/407 (52%), Gaps = 23/407 (5%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           M    E +D IV+GAGI G   AY LAK  +K LLLEQF   H RGSSHG+SR IR  YP
Sbjct: 1   MAAQRELYDAIVIGAGIQGCFTAYHLAKHSKKVLLLEQFFLPHSRGSSHGQSRIIRRAYP 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           ED+Y  M+ E   LW Q + E G ++Y +     +G  EN  L+ + A+  +  V HQ L
Sbjct: 61  EDFYTQMMAECYSLWAQLEHEAGTQLYRQTGLLLLGMKENPELKIIQATLSRQGVEHQCL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
              ++ Q++   I +    VG+    GGV+   KA+   Q    + G ++ D  +V    
Sbjct: 121 SSEELKQRFPN-IRLARGEVGLLEVSGGVLYADKALRALQDAIRQLGGIVHDGEKVV--- 176

Query: 181 KVKDDVRGGVTV-VTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRI 239
               +++ G+ V V ++   +  K  ++TAG W  +L++ + G ELP+Q +  +VCYW  
Sbjct: 177 ----EIKSGLPVMVKTTSRSYQAKSLIITAGPWTNRLLRPL-GAELPLQTLRINVCYW-- 229

Query: 240 KEGDEADYAVGGDFPSFASYG----DPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGP 295
           +E     Y+V   FP F   G      H+YG PS EYPGL+K+  H G   DP+ R   P
Sbjct: 230 QEKVPGSYSVSQAFPCFMGLGLSLAPHHIYGLPSREYPGLMKVCYHHGNNADPEERDC-P 288

Query: 296 GPLLDSLK-ELIQGRFAGRVD--SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAG 352
               D     ++ G     +      PA  + CMY+ TPD  FV+D       +++V+  
Sbjct: 289 AAFSDIQDVHILSGFVRDHLPDLQPEPAVMEHCMYTNTPDGHFVLD--RHPKYDNIVIGA 346

Query: 353 GFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
           GFSGHGFK++PVVG+IL +L +       +L  FRI+RF    K ++
Sbjct: 347 GFSGHGFKLSPVVGKILYELSMK-LTPSYDLTPFRISRFPSLGKAHL 392

Metabolizes sarcosine, L-pipecolic acid and L-proline.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 7

>sp|Q9P0Z9|SOX_HUMAN Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=1 SV=2

 Score =  238 bits (607), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 214/398 (53%), Gaps = 21/398 (5%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           +D IV+GAGI G   AY LAK  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M
Sbjct: 8   WDAIVIGAGIQGCFTAYHLAKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRM 67

Query: 68  VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
           + E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ Q
Sbjct: 68  MHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQ 127

Query: 128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR 187
           ++   I +P   VG+    GGVI   KA+   Q    + G ++RD        KV +   
Sbjct: 128 RFPN-IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLGGIVRDGE------KVVEINP 180

Query: 188 GGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247
           G +  V ++   +  K  V+TAG W  +L++ + G+E+P+Q +  +VCYWR  E     Y
Sbjct: 181 GLLVTVKTTSRSYQAKSLVITAGPWTNQLLRPL-GIEMPLQTLRINVCYWR--EMVPGSY 237

Query: 248 AVGGDFPSFASYG--DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS-- 301
            V   FP F   G    H+YG P+ EYPGL+K++ H G   DP+ R  P     + D   
Sbjct: 238 GVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQI 297

Query: 302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM 361
           L   ++           PA  + CMY+ TPD+ F++D       +++V+  GFSGHGFK+
Sbjct: 298 LSSFVRDHLPDL--KPEPAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKL 353

Query: 362 APVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
           APVVG+IL +L +       +L  FRI+RF    K ++
Sbjct: 354 APVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390

Metabolizes sarcosine, L-pipecolic acid and L-proline.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 7

>sp|P79371|SOX_RABIT Peroxisomal sarcosine oxidase OS=Oryctolagus cuniculus GN=PIPOX PE=1 SV=1

 Score =  234 bits (598), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 141/398 (35%), Positives = 212/398 (53%), Gaps = 21/398 (5%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           +D IV+GAGI G    Y L K  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M
Sbjct: 8   WDAIVIGAGIQGCFTVYHLVKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRM 67

Query: 68  VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
           + E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ Q
Sbjct: 68  MHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQ 127

Query: 128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR 187
           ++   I +P   VG+    GGVI   KA+   Q    + G ++RD        KV +   
Sbjct: 128 RFPN-IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLGGIVRDGE------KVVEINP 180

Query: 188 GGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247
           G +  V ++   +  K  V+TAG W  +L++ + G+E+P+Q +  +VCYWR  E     Y
Sbjct: 181 GLLVTVKTTSRSYQAKSLVITAGPWTNQLLRPL-GIEMPLQTLRINVCYWR--EMVPGSY 237

Query: 248 AVGGDFPSFASYG--DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS-- 301
            V   FP F   G    H+YG P+ EYPGL+K++ H G   DP+ R  P     + D   
Sbjct: 238 GVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQI 297

Query: 302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM 361
           L   ++           PA  + CMY+ TPD+ F++D       +++V+  GFSGHGFK+
Sbjct: 298 LSSFVRDHLPDL--KPEPAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKL 353

Query: 362 APVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
           APVVG+IL +L +       +L  FRI+RF    K ++
Sbjct: 354 APVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390

Metabolizes sarcosine, L-pipecolic acid and L-proline.

Oryctolagus cuniculus (taxid: 9986)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 7

>sp|Q9D826|SOX_MOUSE Peroxisomal sarcosine oxidase OS=Mus musculus GN=Pipox PE=2 SV=1

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/407 (34%), Positives = 210/407 (51%), Gaps = 25/407 (6%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           M    + +D IV+GAGI G   AY LAK  +  LLLEQF   H RGSSHG+SR IR  YP
Sbjct: 1   MAAQTDFWDAIVIGAGIQGCFTAYHLAKHSKSVLLLEQFFLPHSRGSSHGQSRIIRKAYP 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           ED+Y  M+ E    W Q + E G +++ +     +G  EN  L+++ A+  +  + H+ L
Sbjct: 61  EDFYTMMMKECYQTWAQLEREAGTQLHRQTELLLLGTKENPGLKTIQATLSRQGIDHEYL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
               + Q++   I      VG+  + GGV+   KA+   Q +  + G  + D  +V    
Sbjct: 121 SSVDLKQRFPN-IRFTRGEVGLLDKTGGVLYADKALRALQHIICQLGGTVCDGEKVV--- 176

Query: 181 KVKDDVRGGVTV-VTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRI 239
               ++R G+ V V ++ + +     V+TAG W  +L+  + G+ELP+Q +  +VCYWR 
Sbjct: 177 ----EIRPGLPVTVKTTLKSYQANSLVITAGPWTNRLLHPL-GIELPLQTLRINVCYWR- 230

Query: 240 KEGDEADYAVGGDFPSF--ASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGP 297
            E     Y V   FP          H+YG P+ EYPGL+KI  H G   DP+ R   P  
Sbjct: 231 -EKVPGSYGVSQAFPCILGLDLAPHHIYGLPASEYPGLMKICYHHGDNVDPEERDC-PKT 288

Query: 298 LLD-----SLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAG 352
             D      L   ++    G    + P   + CMY+ TPD+ F++D       +++V+  
Sbjct: 289 FSDIQDVQILCHFVRDHLPGL--RAEPDIMERCMYTNTPDEHFILDCHPKY--DNIVIGA 344

Query: 353 GFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
           GFSGHGFK+APVVG+IL +L +       +L  FR++RF    K ++
Sbjct: 345 GFSGHGFKLAPVVGKILYELSMK-LPPSYDLAPFRMSRFSTLSKAHL 390

Metabolizes sarcosine, L-pipecolic acid and L-proline.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 7

>sp|P23342|MSOX_BACSN Monomeric sarcosine oxidase OS=Bacillus sp. (strain NS-129) GN=soxA PE=1 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 22/380 (5%)

Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG MG +A Y LAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y 
Sbjct: 4   HFDVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHHGDTRIIRHAYGEGREYV 63

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRS-VIASCRKNSVPHQVLDCRQ 124
           P  L +  LW + + E  +K++ +      GP    +  S  + +   +S+ H++ + +Q
Sbjct: 64  PFALRAQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELFEGKQ 123

Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKD 184
           +  +++G +E+P+N+  +     GV+     +  ++ LA  +GA +   T V+   +V +
Sbjct: 124 LTDRWAG-VEVPDNYEAIFEPNSGVLFSENCIQAYRELAEAHGATVLTYTPVED-FEVTE 181

Query: 185 DVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
           D+   VT+ T+ G  +   K VV+ GAW  KL+ K+  +E+P+Q     V ++   E DE
Sbjct: 182 DL---VTIKTAKG-SYTANKLVVSMGAWNSKLLSKLD-VEIPLQPYRQVVGFF---ECDE 233

Query: 245 ADYAVGGDFPSFASYGDPHV-YGTPSLEYPGLIKIALHR-GYLCDPD--RRPWGPGPLLD 300
           A Y+    +P+F    +  + YG PS    GL KI  H  G   DPD   R +G  P  +
Sbjct: 234 AKYSNNAHYPAFMVEVENGIYYGFPSFGGSGL-KIGYHSYGQQIDPDTINREFGAYPEDE 292

Query: 301 S-LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           + L++ ++    G        A  +CMY+ TPD+ FVID        +V +A GFSGHGF
Sbjct: 293 ANLRKFLEQYMPGANGELKKGA--VCMYTKTPDEHFVIDLHPKY--SNVAIAAGFSGHGF 348

Query: 360 KMAPVVGRILADLVLSGEAQ 379
           K + VVG  LA L  +G+ +
Sbjct: 349 KFSSVVGETLAQLATTGKTE 368

Catalyzes the oxidative demethylation of sarcosine.

Bacillus sp. (strain NS-129) (taxid: 1419)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

>sp|P40859|MSOX_BACB0 Monomeric sarcosine oxidase OS=Bacillus sp. (strain B-0618) GN=soxA PE=1 SV=2

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 208/391 (53%), Gaps = 23/391 (5%)

Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y 
Sbjct: 4   HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYV 63

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+ L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  +
Sbjct: 64  PLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDE 123

Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKD 184
           + +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +T V+      D
Sbjct: 124 INKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPD 182

Query: 185 DVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
            V+    + T++G  +   K +V+ GAW  KL+ K++ L++P+Q     V ++   E DE
Sbjct: 183 SVK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDE 233

Query: 245 ADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHR-GYLCDPD--RRPWGPGPLLD 300
           + Y+   DFP F     +   YG PS    GL K+  H  G   DPD   R +G  P  +
Sbjct: 234 SKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDE 292

Query: 301 S-LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           S L+  ++    G        A  +CMY+ T D+ F+ID        +VV+A GFSGHGF
Sbjct: 293 SNLRAFLEEYMPGANGELKRGA--VCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGF 348

Query: 360 KMAPVVGRILADLVLSGEAQGVELRHFRIAR 390
           K +  VG +L+ L L+G+ +  ++  F I R
Sbjct: 349 KFSSGVGEVLSQLALTGKTEH-DISIFSINR 378

Catalyzes the oxidative demethylation of sarcosine. Can also oxidize other secondary amino acids such as N-methyl-L-alanine.

Bacillus sp. (strain B-0618) (taxid: 69000)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

>sp|P40873|MSOX_ARTST Monomeric sarcosine oxidase OS=Arthrobacter sp. (strain TE1826) GN=soxA PE=1 SV=2

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 207/397 (52%), Gaps = 33/397 (8%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-Y 64
           +++DVIVVGAG MG +A Y L+K+G KTLL++ F   H  GS HG++R IR  Y E   Y
Sbjct: 5   KDYDVIVVGAGSMGMAAGYYLSKQGVKTLLVDSFHPPHTNGSHHGDTRIIRHAYGEGREY 64

Query: 65  HPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCR 123
            P  L +  LW + + E  +K++ K      GP  E   +   + + +++S+   +L+  
Sbjct: 65  VPFALRAQELWYELEKETHHKIFTKTGVLVFGPKGEAPFVAETMEAAKEHSLDVDLLEGS 124

Query: 124 QVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVK 183
           ++ +++ G + +PEN+  +  +  GV+     +  ++ LA  NGA +   T V+     +
Sbjct: 125 EINKRWPG-VTVPENYNAIFEKNSGVLFSENCIRAYRELAEANGAKVLTYTPVEDFEIAE 183

Query: 184 DDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGD 243
           D V+    + T+ G  F   K +V+ GAW  KL+ K++ +E+P+Q     V ++   E D
Sbjct: 184 DFVK----IQTAYG-SFTASKLIVSMGAWNSKLLSKLN-IEIPLQPYRQVVGFF---ECD 234

Query: 244 EADYAVGGDFPSFASYGDPHV-YGTPSLEYPGLIKIALHR-GYLCDPD--RRPWGPGPLL 299
           E  Y+    +P+F       + YG PS    GL KI  H  G   DPD   R +G  P  
Sbjct: 235 EKKYSNTHGYPAFMVEVPTGIYYGFPSFGGCGL-KIGYHTYGQKIDPDTINREFGIYP-- 291

Query: 300 DSLKELIQGRFAGRVDSSGPAAT------QLCMYSMTPDKDFVIDFLGGELGEDVVVAGG 353
                  +G     +++  P AT       +CMY+ TPD+ FVID L  +   +V +A G
Sbjct: 292 -----EDEGNIRKFLETYMPGATGELKSGDVCMYTKTPDEHFVID-LHPQFS-NVAIAAG 344

Query: 354 FSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIAR 390
           FSGHGFK + VVG  L+ L ++G+ +  ++  F I R
Sbjct: 345 FSGHGFKFSSVVGETLSQLAVTGKTEH-DISIFSINR 380

Catalyzes the oxidative demethylation of sarcosine.

Arthrobacter sp. (strain TE1826) (taxid: 68999)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

>sp|A9N5Q2|MTOX_SALPB N-methyl-L-tryptophan oxidase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=solA PE=3 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 199/401 (49%), Gaps = 46/401 (11%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHP 66
           +D+I++G+G +G++A Y   + G K L+ +     H +GS HG++R IR  Y E + Y P
Sbjct: 3   YDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHHGDTRLIRHAYGEGEKYVP 62

Query: 67  MVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
           +VL +  LW++  +     ++ ++   ++GP+++  L +V  S ++  +  + LD   ++
Sbjct: 63  LVLRAQALWDELSTHNEEPIFVRSGVVNLGPADSAFLANVARSAQQWQLNVERLDATALM 122

Query: 127 QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV 186
            ++   I +P+N++G+     G ++   A++ +  LA + G     N+ V  +    DD 
Sbjct: 123 TRWP-EIRVPDNYIGLFEADSGFLRSELAITTWLRLAREAGCAQLFNSPVSHIH--HDD- 178

Query: 187 RGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEAD 246
             GVT+ TS G  +   K +++AG WV  LV      ELP+Q V     +++     +  
Sbjct: 179 -NGVTIETSEG-CYHASKALISAGTWVKALVP-----ELPVQPVRKVFAWFKA----DGR 227

Query: 247 YAVGGDFPSFAS---YGDPHVYGTPSLEYPGLIKIALHRG---YLCDPDRRPWG------ 294
           Y+    FP+F      GD H YG P+      +KI  H G        +R+P+       
Sbjct: 228 YSTKNRFPAFTGEMPNGD-HYYGFPAEN--DELKIGKHNGGQLIQAPEERKPFAAVASDG 284

Query: 295 --PGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAG 352
               P L ++   I G   G            C Y  +PD+DF+ID L G   E+ +V  
Sbjct: 285 AEAFPFLRNVLPGIGGCLHGAA----------CTYDNSPDEDFIIDTLPGH--ENTLVIT 332

Query: 353 GFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKE 393
           G SGHGFK APV+G I AD  L G+    +L  FR++RF +
Sbjct: 333 GLSGHGFKFAPVLGEIAADFAL-GKTPSFDLTPFRLSRFSQ 372

Catalyzes the oxidative demethylation of N-methyl-L-tryptophan.

Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) (taxid: 1016998)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: -

>sp|B4TET2|MTOX_SALHS N-methyl-L-tryptophan oxidase OS=Salmonella heidelberg (strain SL476) GN=solA PE=3 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 199/401 (49%), Gaps = 46/401 (11%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHP 66
           +D+I++G+G +G++A Y   + G K L+ +     H +GS HG++R IR  Y E + Y P
Sbjct: 3   YDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHHGDTRLIRHAYGEGEKYVP 62

Query: 67  MVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
           +VL +  LW++  +     ++ ++   ++GP+++  L +V  S ++  +  + LD   ++
Sbjct: 63  LVLRAQTLWDELSTHNEEPIFVRSGVVNLGPADSAFLANVARSAQQWQLNVERLDATALM 122

Query: 127 QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV 186
            ++   I +P+N++G+     G ++   A++ +  LA + G     N+ V  +    DD 
Sbjct: 123 TRWP-EIRVPDNYIGLFEADSGFLRSELAITTWLRLAREAGCAQLFNSPVSHIH--HDD- 178

Query: 187 RGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEAD 246
             GVT+ TS G  +   K +++AG WV  LV      ELP+Q V     +++     +  
Sbjct: 179 -NGVTIETSEG-SYHASKALISAGTWVKALVP-----ELPVQPVRKVFAWFKA----DGR 227

Query: 247 YAVGGDFPSFAS---YGDPHVYGTPSLEYPGLIKIALHRG---YLCDPDRRPWG------ 294
           Y+    FP+F      GD + YG P+      +KI  H G        +R+P+       
Sbjct: 228 YSTKNRFPAFTGEMPNGDQY-YGFPAEN--DELKIGKHNGGQRIQAQEERKPFAAVASDG 284

Query: 295 --PGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAG 352
               P L ++   I G   G            C Y  +PD+DF+ID L G   E+ +V  
Sbjct: 285 AEAFPFLRNVLPGIGGCLHGAA----------CTYDNSPDEDFIIDTLPGH--ENTLVIT 332

Query: 353 GFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKE 393
           G SGHGFK APV+G I AD  L G+    +L  FR++RF +
Sbjct: 333 GLSGHGFKFAPVLGEIAADFAL-GKTPSFDLTPFRLSRFSQ 372

Catalyzes the oxidative demethylation of N-methyl-L-tryptophan.

Salmonella heidelberg (strain SL476) (taxid: 454169)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
224142069	411	sarcosine oxidase [Populus trichocarpa]	0.985	0.990	0.789	0.0
255589834	411	sarcosine oxidase, putative [Ricinus com	0.983	0.987	0.723	1e-178
224121148	401	sarcosine oxidase [Populus trichocarpa]	0.963	0.992	0.738	1e-175
297825429	415	sarcosine oxidase family protein [Arabid	0.992	0.987	0.692	1e-170
15224169	416	putative sarcosine oxidase [Arabidopsis	0.992	0.985	0.678	1e-167
225464346	431	PREDICTED: probable sarcosine oxidase-li	0.985	0.944	0.670	1e-166
449437334	409	PREDICTED: probable sarcosine oxidase-li	0.983	0.992	0.643	1e-155
357466531	390	Sarcosine oxidase [Medicago truncatula]	0.929	0.984	0.640	1e-150
357466535	391	Sarcosine oxidase [Medicago truncatula]	0.944	0.997	0.621	1e-147
388495658	391	unknown [Medicago truncatula]	0.944	0.997	0.619	1e-146

>gi|224142069|ref|XP_002324381.1| sarcosine oxidase [Populus trichocarpa] gi|222865815|gb|EEF02946.1| sarcosine oxidase [Populus trichocarpa]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/409 (78%), Positives = 363/409 (88%), Gaps = 2/409 (0%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME+S  +FDVIVVGAGIMGSS AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP
Sbjct: 1   MEYSSHHFDVIVVGAGIMGSSTAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           EDYY  MV+ESS  WEQAQSEIGYKVYFKA QFDMGPS+NKSL SVI+SC + S+PHQVL
Sbjct: 61  EDYYCDMVMESSQSWEQAQSEIGYKVYFKAQQFDMGPSDNKSLLSVISSCERKSLPHQVL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
           D +QV  ++SGRI IPE+WVGV TE+GGVIKPTKAVSMFQ LA + GAVLRDN EVK + 
Sbjct: 121 DGQQVADRFSGRINIPESWVGVLTEVGGVIKPTKAVSMFQALAFQKGAVLRDNMEVKNI- 179

Query: 181 KVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
            VKD+ RGGV VV ++GEE+WGKKCVVTAGAW+GKLVK +SGLELPIQA+ET+VCYWRIK
Sbjct: 180 -VKDEARGGVNVVVANGEEYWGKKCVVTAGAWMGKLVKTVSGLELPIQALETTVCYWRIK 238

Query: 241 EGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLD 300
           EG EA +A+G DFP+FASYG+P++YGTPSLE+PGLIKIA+H GY CDPD+RPWGPG   D
Sbjct: 239 EGHEAKFAIGSDFPTFASYGEPYIYGTPSLEFPGLIKIAVHGGYTCDPDKRPWGPGISSD 298

Query: 301 SLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360
           S+KE I+GRF+G VD  GP ATQLCMYSMTPD DFVIDFLGGE G+DVVV GGFSGHGFK
Sbjct: 299 SMKEWIEGRFSGLVDYGGPVATQLCMYSMTPDGDFVIDFLGGEFGKDVVVGGGFSGHGFK 358

Query: 361 MAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDYEEQVSFS 409
           MAPVVGRILADL LSGEA+GV+L+HFRI RF+ENPKGNVKDYE+QVS S
Sbjct: 359 MAPVVGRILADLALSGEAKGVDLKHFRIQRFQENPKGNVKDYEDQVSKS 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589834|ref|XP_002535101.1| sarcosine oxidase, putative [Ricinus communis] gi|223524032|gb|EEF27281.1| sarcosine oxidase, putative [Ricinus communis]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 295/408 (72%), Positives = 350/408 (85%), Gaps = 2/408 (0%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME+SG  FD IV+GAGIMGS+ AY+LAKRG+KTLLLEQFDFLHHRGSSHGESRTIRATYP
Sbjct: 1   MEYSGNEFDAIVIGAGIMGSTTAYELAKRGKKTLLLEQFDFLHHRGSSHGESRTIRATYP 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           EDYY  M +ES  LWE+AQSEIG+KVYFKA   DMGPS+NKSL SVI+SC+KNSV  QVL
Sbjct: 61  EDYYCAMAIESFPLWEEAQSEIGFKVYFKAQHLDMGPSDNKSLLSVISSCKKNSVSFQVL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
           D +QV +K+SGRI IPENW+GV+ ELGGV++PTKAVSMFQ+LA + GAVLRDNTEV  + 
Sbjct: 121 DSQQVPEKFSGRINIPENWIGVSAELGGVLRPTKAVSMFQSLASRKGAVLRDNTEVNNI- 179

Query: 181 KVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
            +KDDVRGG+ V  ++GE+FW +KCV+TAGAWV KLVK +SGL+LPIQA+ET+VCYWRIK
Sbjct: 180 -IKDDVRGGLWVFAANGEKFWAEKCVITAGAWVRKLVKTVSGLDLPIQALETTVCYWRIK 238

Query: 241 EGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLD 300
           EG E+++ +G DFP+FASYG P+VYGTPSLE+PGLIKIA+H G  C+PD+RPWGP   L 
Sbjct: 239 EGHESEFTMGVDFPTFASYGQPYVYGTPSLEFPGLIKIAVHGGRACNPDKRPWGPCLTLS 298

Query: 301 SLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360
           SLKE I+  F+G VDS GP ATQ CMYSMTPD+D+VIDFLG E G+DVVV GGFSGHGFK
Sbjct: 299 SLKEWIERTFSGLVDSDGPVATQSCMYSMTPDEDYVIDFLGEEFGKDVVVGGGFSGHGFK 358

Query: 361 MAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDYEEQVSF 408
           MAPV+GRILADL L GEA+GV+L HF I RF++NP+GN+KDYE+QV F
Sbjct: 359 MAPVIGRILADLALDGEAKGVDLNHFSIQRFRDNPQGNMKDYEDQVDF 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121148|ref|XP_002330755.1| sarcosine oxidase [Populus trichocarpa] gi|222872557|gb|EEF09688.1| sarcosine oxidase [Populus trichocarpa]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/401 (73%), Positives = 345/401 (86%), Gaps = 3/401 (0%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME S   FDVIVVGAGIMGSS AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT+RA Y 
Sbjct: 1   MECSSHQFDVIVVGAGIMGSSTAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTLRAAYT 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           EDYY  MV ESS +WEQAQSEIGYKVYFKA QFDM PS+NKSL S+I+SC K S+P++VL
Sbjct: 61  EDYYCDMVKESSQIWEQAQSEIGYKVYFKAQQFDMSPSDNKSLLSIISSCEKKSIPYRVL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
           D +QV  ++SG I +PE+W GV T++GGVIKPTKAVSMFQ LA + GAVLRDN EVK V 
Sbjct: 121 DRQQVSDRFSGLINLPEDWFGVLTDVGGVIKPTKAVSMFQALAFQRGAVLRDNMEVKNV- 179

Query: 181 KVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
            VKD+V+GGV V T+ GE+FWGKKCV+TAGAWV KLVK + GLELPIQA+ET+VCYWRIK
Sbjct: 180 -VKDEVKGGVNVETADGEKFWGKKCVITAGAWVRKLVKTVGGLELPIQALETTVCYWRIK 238

Query: 241 EGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGP-GPLL 299
           EG EA +A+G DFP+F SYG+P+V+GTPSLE+PGLIKI+++ GY CDPD+RPW P G  L
Sbjct: 239 EGHEAKFAIGSDFPTFVSYGEPYVFGTPSLEFPGLIKISVNGGYPCDPDKRPWDPAGISL 298

Query: 300 DSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           DSLKE I+GRF+G VD  GP ATQ CMYSMTPD+DFV+DFLGGE G+DVV+ GGFSGHGF
Sbjct: 299 DSLKEWIKGRFSGLVDYGGPVATQSCMYSMTPDEDFVLDFLGGEFGKDVVIGGGFSGHGF 358

Query: 360 KMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVK 400
           KMAPVVGR+LADL+LSGEA+GVE+++FR  RF++NPKGNVK
Sbjct: 359 KMAPVVGRVLADLLLSGEAKGVEMKYFRAQRFQDNPKGNVK 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825429|ref|XP_002880597.1| sarcosine oxidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326436|gb|EFH56856.1| sarcosine oxidase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/413 (69%), Positives = 345/413 (83%), Gaps = 3/413 (0%)

Query: 1   MEFSGE-NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
           ME+SG+  FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY
Sbjct: 1   MEYSGDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 60

Query: 60  PEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV 119
           PEDYY+ MV ES+ LW +AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+++ H+V
Sbjct: 61  PEDYYYAMVSESTRLWAEAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHALAHRV 120

Query: 120 LDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTV 179
           +D   V + +SGRI IPENW+GV+TELGGVIKPTKAVSMFQTLA  +GAVLRDNT+V  +
Sbjct: 121 MDSHAVSEHFSGRISIPENWIGVSTELGGVIKPTKAVSMFQTLAFGHGAVLRDNTKVANI 180

Query: 180 LKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRI 239
            K   + R GV V T  G++F+GKKC+VTAGAW+ KLVK ++G++ P++ +ET+VCYWRI
Sbjct: 181 -KRDGENREGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWRI 239

Query: 240 KEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLL 299
           +EG E  + + G+FP+FASYG P+VYGTPSLEYPGLIK+A+H GY CDPD+RPWGPG  L
Sbjct: 240 REGHEEKFTIDGEFPTFASYGVPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVKL 299

Query: 300 DSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           + LKE I+ RF G VDS GP ATQLCMYSMTPD+DFVIDFLGGELG DVVV GGFSGHGF
Sbjct: 300 EELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGELGRDVVVGGGFSGHGF 359

Query: 360 KMAPVVGRILADLVLSGEAQ-GVELRHFRIARFKENPKGNVKDYEEQVSFSVP 411
           KMAP VGRILAD+   GEA+ GVE++ F + RF+ENPKGNVK+Y +QV    P
Sbjct: 360 KMAPAVGRILADMATEGEARGGVEMKQFSLRRFEENPKGNVKEYPDQVILDCP 412

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224169|ref|NP_180034.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|20139956|sp|Q9SJA7.1|SOX_ARATH RecName: Full=Probable sarcosine oxidase gi|4572673|gb|AAD23888.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|17529040|gb|AAL38730.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|21436151|gb|AAM51322.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|46251338|gb|AAS84616.1| peroxisomal sarcosine/pipecolate oxidase [Arabidopsis thaliana] gi|110742357|dbj|BAE99101.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|330252500|gb|AEC07594.1| putative sarcosine oxidase [Arabidopsis thaliana]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/414 (67%), Positives = 340/414 (82%), Gaps = 4/414 (0%)

Query: 1   MEFSGE-NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
           ME+S +  FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY
Sbjct: 1   MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 60

Query: 60  PEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV 119
           PEDYY+ MV ES+ LW  AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+ + H+V
Sbjct: 61  PEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRV 120

Query: 120 LDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTV 179
           +D   V + +SGRI IPENW+GV+TELGG+IKPTKAVSMFQTLAI +GA+LRDNT+V  +
Sbjct: 121 MDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGAILRDNTKVANI 180

Query: 180 LKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRI 239
            K   +   GV V T  G++F+GKKC+VTAGAW+ KLVK ++G++ P++ +ET+VCYWRI
Sbjct: 181 -KRDGESGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWRI 239

Query: 240 KEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLL 299
           KEG E  + + G+FP+FASYG P+VYGTPSLEYPGLIK+A+H GY CDPD+RPWGPG  L
Sbjct: 240 KEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVKL 299

Query: 300 DSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           + LKE I+ RF G VDS GP ATQLCMYSMTPD+DFVIDFLGGE G DVVV GGFSGHGF
Sbjct: 300 EELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHGF 359

Query: 360 KMAPVVGRILADLVLSGEA--QGVELRHFRIARFKENPKGNVKDYEEQVSFSVP 411
           KMAP VGRILAD+ +  EA   GVE++ F + RF++NPKGN K+Y +QV   VP
Sbjct: 360 KMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKGNAKEYPDQVILDVP 413

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464346|ref|XP_002272090.1| PREDICTED: probable sarcosine oxidase-like [Vitis vinifera]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 275/410 (67%), Positives = 340/410 (82%), Gaps = 3/410 (0%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME+SG+ FDVIV+G G+MGSS AY +AKRG  TLLLEQFDFLHHRGSSHGESRTIRATYP
Sbjct: 1   MEYSGQKFDVIVIGGGVMGSSTAYHVAKRGYTTLLLEQFDFLHHRGSSHGESRTIRATYP 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           E+YY  MV+E++ LWEQ QSE+GYKVY+K  QFDMGPS++KSLR VIA+C   S+P +VL
Sbjct: 61  ENYYFGMVVEAAKLWEQVQSEVGYKVYYKTPQFDMGPSDDKSLRCVIANCESYSMPCRVL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
           D  QV   +SG++ IPENW+GV TELGGVIKPTKAVSMFQTLA++NGAVL DN EVK   
Sbjct: 121 DPAQVSDHFSGKMAIPENWIGVLTELGGVIKPTKAVSMFQTLALQNGAVLMDNMEVK--- 177

Query: 181 KVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
            +K D  GG+ V TS+G +F G KCVVT GAW+ KLVK +SG  LP+Q +ET+VCYW+IK
Sbjct: 178 DIKKDDGGGIVVHTSNGAKFCGNKCVVTVGAWMKKLVKTVSGPLLPVQPIETTVCYWKIK 237

Query: 241 EGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLD 300
           +G   ++ +   FP+FASYG+P++YGTPSLE+PGLIK+A+H G+ CDPD+R WGP   L+
Sbjct: 238 DGHHGEFTIESGFPTFASYGEPYIYGTPSLEFPGLIKVAVHGGHSCDPDKRTWGPPASLE 297

Query: 301 SLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360
           SLK+ I+GRF+G ++ +GP A Q CMYSMTPD+DFVIDFLGGELG+DV VAGGFSGHGFK
Sbjct: 298 SLKQWIEGRFSGLIECTGPVAIQSCMYSMTPDEDFVIDFLGGELGKDVAVAGGFSGHGFK 357

Query: 361 MAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDYEEQVSFSV 410
           MAP+VGR LA++VL GEA+GVEL+HFR+ARF+ NPKGNVK++E+QV   +
Sbjct: 358 MAPLVGRTLAEMVLDGEAKGVELKHFRLARFEGNPKGNVKEFEDQVLMDI 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437334|ref|XP_004136447.1| PREDICTED: probable sarcosine oxidase-like [Cucumis sativus] gi|449515559|ref|XP_004164816.1| PREDICTED: probable sarcosine oxidase-like [Cucumis sativus]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/410 (64%), Positives = 326/410 (79%), Gaps = 4/410 (0%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           M  S   FDVIVVGAG+MGSS AY LAK G + L+LEQFDFLHHRGSSHGESRTIRATYP
Sbjct: 1   MAASDTLFDVIVVGAGVMGSSTAYHLAKTGNRVLILEQFDFLHHRGSSHGESRTIRATYP 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           EDYY+ +V+ES  LW  A+ EIGYKVYF   Q D+G  ++KSL +V+ +CRK+S+PH VL
Sbjct: 61  EDYYYGLVMESYELWRMAEEEIGYKVYFPTEQLDIGSPDDKSLTAVVDTCRKHSIPHLVL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
           D  ++ +KYSGR+EIP +WVGV ++ GGVIKPTKAVSM+QTLA KNGAV++DN EV  + 
Sbjct: 121 DSGELREKYSGRVEIPADWVGVWSKYGGVIKPTKAVSMYQTLAYKNGAVMKDNAEVVEIK 180

Query: 181 KVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
             +D+  G + V  ++GE F GKKCVVT GAW  KLVK + G+ELPI+ +E SV YWRIK
Sbjct: 181 --RDESNGRIVVSIANGESFRGKKCVVTVGAWSKKLVKSVGGIELPIRPLEVSVSYWRIK 238

Query: 241 EGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLL- 299
           EG EA+YA+GG FP+ ASYG+P+VYGTPSLE+PGLIK+A+H G+ C+PD+R WG G  L 
Sbjct: 239 EGFEAEYAIGGGFPTIASYGEPYVYGTPSLEFPGLIKVAIHGGHECNPDKRSWGKGGRLP 298

Query: 300 -DSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHG 358
             +LKE I  +F GRVDSSGP +TQ CMYSMTPD DFVIDFLGGE  +DVV+ GGFSGHG
Sbjct: 299 IAALKEWIDEKFGGRVDSSGPVSTQSCMYSMTPDGDFVIDFLGGEFEKDVVIGGGFSGHG 358

Query: 359 FKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDYEEQVSF 408
           FKM+P +GRILA+L L G A+GVEL++F++ARF+ENPKGNVK + +QV  
Sbjct: 359 FKMSPTIGRILAELALDGAAEGVELKYFKLARFEENPKGNVKSFADQVKL 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466531|ref|XP_003603550.1| Sarcosine oxidase [Medicago truncatula] gi|355492598|gb|AES73801.1| Sarcosine oxidase [Medicago truncatula]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 249/389 (64%), Positives = 313/389 (80%), Gaps = 5/389 (1%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           FDVI+VGAG+MGSS AYQ AKRG KTLLLEQFDFLHHRGSSHGESRTIRATY +++Y+PM
Sbjct: 6   FDVIIVGAGVMGSSTAYQAAKRGLKTLLLEQFDFLHHRGSSHGESRTIRATYIQNHYYPM 65

Query: 68  VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
           V+ES  LW++AQ+++GY VYFKA   DMGP  +  + SV+ +CRK+ +PHQ+L+ +QV +
Sbjct: 66  VMESYKLWKEAQAQVGYNVYFKAQHLDMGPFNDPVVHSVVENCRKHKIPHQLLNHQQVAE 125

Query: 128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR 187
           K+SG+  +P NWVG++TE GG++KPTKA +MFQTLA KNGAVL+DNT+V     +K+D  
Sbjct: 126 KFSGKFNLPANWVGLSTEYGGILKPTKATAMFQTLAYKNGAVLKDNTKVT---DIKND-- 180

Query: 188 GGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247
           GGV V T++GE+F GKKCVVT GAW  KLVK+ISG+E+PI+ VET VCYWRIK+G E  +
Sbjct: 181 GGVVVFTANGEKFRGKKCVVTVGAWANKLVKRISGVEIPIKPVETHVCYWRIKKGHEGKF 240

Query: 248 AVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQ 307
            +GGDFP+FAS+G  +VYGTP LEYPGLIK A+H G LCDPD+RPWG   +++ LKE ++
Sbjct: 241 VIGGDFPTFASFGKAYVYGTPVLEYPGLIKAAVHGGRLCDPDKRPWGSVVMMNELKEWVE 300

Query: 308 GRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGR 367
           G F G VDSS P   Q CMYSMTPD+DFVIDFLGGE G++VV+  GFSGHGFKMAPV+G+
Sbjct: 301 GIFGGVVDSSEPVVKQSCMYSMTPDEDFVIDFLGGEFGKNVVLGVGFSGHGFKMAPVIGK 360

Query: 368 ILADLVLSGEAQGVELRHFRIARFKENPK 396
           IL  LV+ GE   V+L+HFRI RF+   K
Sbjct: 361 ILTQLVVDGETNEVDLKHFRIGRFQMASK 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466535|ref|XP_003603552.1| Sarcosine oxidase [Medicago truncatula] gi|355492600|gb|AES73803.1| Sarcosine oxidase [Medicago truncatula]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 245/394 (62%), Positives = 314/394 (79%), Gaps = 4/394 (1%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME SG ++DVI+VGAG+MGSS AY  AKRG KTL+LEQFDFLHHRGSSHGESRTIRA YP
Sbjct: 1   MESSGSDYDVIIVGAGVMGSSTAYYAAKRGLKTLVLEQFDFLHHRGSSHGESRTIRAAYP 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           + +Y  MV++S  LWE+AQ++ G+ VY+KAH FDMG S +  + SV+ +CR+N++P Q+L
Sbjct: 61  QQHYCQMVMKSYQLWEEAQAQAGFNVYYKAHHFDMGSSNDPMILSVVENCRQNNLPCQLL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
              QV +K+SGRI+IP++WVG++TE GGVIK TKAV+MFQ+LA  +GAVL DN EV   +
Sbjct: 121 RREQVAEKFSGRIDIPDDWVGLSTEYGGVIKATKAVTMFQSLARSHGAVLNDNVEV---V 177

Query: 181 KVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
            +K+D  G V ++T+ GE+F GKKCVVT GAWV KLVKKISG+E+PIQ +ET +CYWRIK
Sbjct: 178 DIKND-GGSVVILTAKGEKFRGKKCVVTVGAWVNKLVKKISGVEIPIQPLETHLCYWRIK 236

Query: 241 EGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLD 300
           EG +  + +GGDFP+FAS G   +YG+PS E+PGLIK+A+H G LCDPD+RPWG G ++D
Sbjct: 237 EGHQGKFTIGGDFPTFASLGRVLLYGSPSFEFPGLIKVAVHGGNLCDPDKRPWGAGVMMD 296

Query: 301 SLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360
            +KE ++GRF G VDSS P   Q CMYSMTPD+DFVIDFLGGE  ++VV+  GFSGHGFK
Sbjct: 297 EMKEWVEGRFCGLVDSSEPVVKQACMYSMTPDEDFVIDFLGGEFEKNVVLGAGFSGHGFK 356

Query: 361 MAPVVGRILADLVLSGEAQGVELRHFRIARFKEN 394
           MAPV+G+IL +LV+ G    V+L+HFRI RFK +
Sbjct: 357 MAPVIGKILTELVVDGGTNEVDLKHFRIGRFKSD 390

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495658|gb|AFK35895.1| unknown [Medicago truncatula]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/394 (61%), Positives = 313/394 (79%), Gaps = 4/394 (1%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME SG ++DVI+VGAG+MGSS AY  AKRG KTL+LEQFDFLHHRGSSHGESRTIRA YP
Sbjct: 1   MESSGSDYDVIIVGAGVMGSSTAYYAAKRGLKTLVLEQFDFLHHRGSSHGESRTIRAAYP 60

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           + +Y  MV++S  LWE+AQ++ G+ VY+KAH FDMG S +  + SV+ +CR+N++P Q+L
Sbjct: 61  QQHYCQMVMKSYQLWEEAQAQAGFNVYYKAHHFDMGSSNDPMILSVVENCRQNNLPCQLL 120

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
              QV +K+SGRI+IP++WVG++TE GGVIK TKAV+MFQ+LA  +GAVL DN EV   +
Sbjct: 121 RREQVAEKFSGRIDIPDDWVGLSTEYGGVIKATKAVTMFQSLARSHGAVLNDNVEV---V 177

Query: 181 KVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
            +K+D  G V ++T+ GE+F GKKCVVT GAWV KLVKKISG+E+PIQ +ET +CYWRIK
Sbjct: 178 DIKND-GGSVVILTAKGEKFRGKKCVVTVGAWVNKLVKKISGVEIPIQPLETHLCYWRIK 236

Query: 241 EGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLD 300
           EG +  + +GGDFP+FAS G   +YG+PS E+PGLIK+A+H G LCDPD+RPWG G ++D
Sbjct: 237 EGHQGKFTIGGDFPTFASLGRVLLYGSPSFEFPGLIKVAVHGGNLCDPDKRPWGAGVMMD 296

Query: 301 SLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360
            +KE ++GRF G VDSS P   Q CMYSMTPD+DFVIDFLGGE  ++VV+  GFSGHGFK
Sbjct: 297 EMKEWVEGRFCGLVDSSEPVVKQACMYSMTPDEDFVIDFLGGEFEKNVVLGAGFSGHGFK 356

Query: 361 MAPVVGRILADLVLSGEAQGVELRHFRIARFKEN 394
           MAPV+G+IL +LV+ G    V+L+HF I RFK +
Sbjct: 357 MAPVIGKILTELVVDGGTNEVDLKHFTIGRFKSD 390

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2046643	416	AT2G24580 [Arabidopsis thalian	0.992	0.985	0.666	3.1e-154
UNIPROTKB|F1RN92	392	PIPOX "Uncharacterized protein	0.920	0.969	0.359	2.7e-61
ZFIN|ZDB-GENE-110627-2	415	pipox "pipecolic acid oxidase"	0.927	0.922	0.355	1.5e-60
UNIPROTKB|Q29RU9	392	PIPOX "Peroxisomal sarcosine o	0.920	0.969	0.356	3.5e-59
UNIPROTKB|Q9P0Z9	390	PIPOX "Peroxisomal sarcosine o	0.912	0.966	0.351	3.2e-58
UNIPROTKB|P79371	390	PIPOX "Peroxisomal sarcosine o	0.912	0.966	0.346	2.2e-57
RGD|1311347	390	Pipox "pipecolic acid oxidase"	0.912	0.966	0.331	1.6e-54
MGI|MGI:1197006	390	Pipox "pipecolic acid oxidase"	0.912	0.966	0.339	2.1e-54
UNIPROTKB|E2R6W0	392	PIPOX "Uncharacterized protein	0.893	0.941	0.335	8e-53
WB|WBGene00015788	385	C15B12.8 [Caenorhabditis elega	0.915	0.981	0.288	6.8e-40

TAIR|locus:2046643 AT2G24580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1504 (534.5 bits), Expect = 3.1e-154, P = 3.1e-154
 Identities = 276/414 (66%), Positives = 334/414 (80%)

Query:     1 MEFSGEN-FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
             ME+S +  FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY
Sbjct:     1 MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 60

Query:    60 PEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV 119
             PEDYY+ MV ES+ LW  AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+ + H+V
Sbjct:    61 PEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRV 120

Query:   120 LDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTV 179
             +D   V + +SGRI IPENW+GV+TELGG+IKPTKAVSMFQTLAI +GA+LRDNT+V  +
Sbjct:   121 MDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGAILRDNTKVANI 180

Query:   180 LXXXXXXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRI 239
                              G++F+GKKC+VTAGAW+ KLVK ++G++ P++ +ET+VCYWRI
Sbjct:   181 -KRDGESGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWRI 239

Query:   240 KEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLL 299
             KEG E  + + G+FP+FASYG P+VYGTPSLEYPGLIK+A+H GY CDPD+RPWGPG  L
Sbjct:   240 KEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVKL 299

Query:   300 DSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
             + LKE I+ RF G VDS GP ATQLCMYSMTPD+DFVIDFLGGE G DVVV GGFSGHGF
Sbjct:   300 EELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHGF 359

Query:   360 KMAPVVGRILADLVLSGEAQG--VELRHFRIARFKENPKGNVKDYEEQVSFSVP 411
             KMAP VGRILAD+ +  EA G  VE++ F + RF++NPKGN K+Y +QV   VP
Sbjct:   360 KMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKGNAKEYPDQVILDVP 413

GO:0005737 "cytoplasm" evidence=ISM

GO:0008115 "sarcosine oxidase activity" evidence=IEA;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1RN92 PIPOX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 144/401 (35%), Positives = 213/401 (53%)

Query:     6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
             E +D IV+GAGI G   AY LAK  ++ LLLEQF   H RGSSHG+SR IR  YPED+Y 
Sbjct:     6 ELYDAIVIGAGIQGCFTAYHLAKHSRRVLLLEQFFLPHSRGSSHGQSRIIRRAYPEDFYT 65

Query:    66 PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
              M+ E   +W Q Q E G ++Y +     +G  EN  L+++ A+  ++ V HQ L   ++
Sbjct:    66 EMMAECYRIWAQLQHEAGTQLYRQTGLLLLGMKENPELKTIQATLSRHGVEHQYLPSEEL 125

Query:   126 LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXX 185
              Q++   I++    VG+  + GGV+   KA+ + Q    + G ++ D  +V  +      
Sbjct:   126 KQRFPN-IQLARGEVGLLDKSGGVLYADKALRVLQDAIRQLGGIVHDGEKVMEI------ 178

Query:   186 XXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEA 245
                           +  +  ++TAG W  +L++ + GLELP+Q +  +VCYW  KE    
Sbjct:   179 KPGLPVVVKTTSSSYQARSLIITAGPWTNRLLRPL-GLELPLQTLRINVCYW--KEKAPG 235

Query:   246 DYAVGGDFPSFASYG---DPH-VYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDS 301
              Y+V   FP F   G    PH +YG PS EYPGL+K+  H G   DP+ R   P    D 
Sbjct:   236 SYSVSQAFPCFLGLGLSLAPHHIYGLPSREYPGLVKVCYHHGNNADPEERDC-PTAFADI 294

Query:   302 LKELIQGRFAGRV--D-SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHG 358
                 I  RF   +  D    PA  + CMY+ TPD+ F++D        ++V+  GFSGHG
Sbjct:   295 QDVHILSRFVRDLLPDLEPEPAIMEHCMYTNTPDEHFILD--RHPKYNNIVIGAGFSGHG 352

Query:   359 FKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
             FK++P+VG+IL +L +       +L  FRI+RF    K ++
Sbjct:   353 FKLSPIVGKILYELSMK-LTPSYDLTPFRISRFPSLGKAHL 392

GO:0050031 "L-pipecolate oxidase activity" evidence=IEA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IEA

GO:0008115 "sarcosine oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

ZFIN|ZDB-GENE-110627-2 pipox "pipecolic acid oxidase" [Danio rerio (taxid:7955)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 144/405 (35%), Positives = 215/405 (53%)

Query:     1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
             +E S + FD IV+GAGI GS  AYQLAK  QKTLLLEQF   H RGSSHG++R IR  Y 
Sbjct:    27 LEMSSKVFDCIVIGAGIQGSCTAYQLAKNKQKTLLLEQFVLPHSRGSSHGQTRIIRKAYE 86

Query:    61 EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
             ED+Y  M+ ES  LW + + E G ++Y +     MGP +++    +  + +++ +P   L
Sbjct:    87 EDFYTQMMQESYELWAELEKEAGVELYRRTGLLVMGPEKSEGFSKLKDTMQRHKIPTVFL 146

Query:   121 DCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVL 180
             + +Q   ++   + + E    +     GV+   +++   Q L   +G VL+D   V  V 
Sbjct:   147 E-KQEFNEHISNVNLSEGNGALIDTFAGVLYAERSLQAVQRLFQCSGGVLKDGQTVTGVS 205

Query:   181 XXXXXXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
                                + GK  V+TAG W   L+   +GL+LP++ V+ +VCYW  K
Sbjct:   206 PGAVVTVSTGSAV------YRGKSVVITAGPWANTLLAH-AGLQLPLKVVKINVCYW--K 256

Query:   241 EGDEADYAVGGDFPSFASY----GDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRP--WG 294
             E     Y+V   FP F       G+  +YG PS EYPGL+K+  H G   DPD R     
Sbjct:   257 EKIPGTYSVDQSFPCFIQMEPKEGEYDIYGLPSNEYPGLMKVCYHMGSETDPDERDKQTD 316

Query:   295 PGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGF 354
              G + D L   +     G V +  PA  + CMY++TPD  FV+D      G ++++  GF
Sbjct:   317 RGDI-DILARYVTRCLPGLVPA--PAVVESCMYTVTPDHHFVLDS-HPSYG-NIIIGAGF 371

Query:   355 SGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
             SGHGFK +P++G++L+ L + G+    +L  FRI RF+   K ++
Sbjct:   372 SGHGFKFSPIIGKVLSQLAM-GQVPSHDLSPFRIQRFQSQSKSSL 415

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q29RU9 PIPOX "Peroxisomal sarcosine oxidase" [Bos taurus (taxid:9913)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 143/401 (35%), Positives = 206/401 (51%)

Query:     6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
             E +D IV+GAGI G   AY LAK  +K LLLEQF   H RGSSHG+SR IR  YPED+Y 
Sbjct:     6 ELYDAIVIGAGIQGCFTAYHLAKHSKKVLLLEQFFLPHSRGSSHGQSRIIRRAYPEDFYT 65

Query:    66 PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
              M+ E   LW Q + E G ++Y +     +G  EN  L+ + A+  +  V HQ L   ++
Sbjct:    66 QMMAECYSLWAQLEHEAGTQLYRQTGLLLLGMKENPELKIIQATLSRQGVEHQCLSSEEL 125

Query:   126 LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXX 185
              Q++   I +    VG+    GGV+   KA+   Q    + G ++ D  +V  +      
Sbjct:   126 KQRFPN-IRLARGEVGLLEVSGGVLYADKALRALQDAIRQLGGIVHDGEKVVEI------ 178

Query:   186 XXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEA 245
                           +  K  ++TAG W  +L++ + G ELP+Q +  +VCYW+ K     
Sbjct:   179 KSGLPVMVKTTSRSYQAKSLIITAGPWTNRLLRPL-GAELPLQTLRINVCYWQEKV--PG 235

Query:   246 DYAVGGDFPSFASYG---DPH-VYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDS 301
              Y+V   FP F   G    PH +YG PS EYPGL+K+  H G   DP+ R   P    D 
Sbjct:   236 SYSVSQAFPCFMGLGLSLAPHHIYGLPSREYPGLMKVCYHHGNNADPEERDC-PAAFSDI 294

Query:   302 LK-ELIQGRFAGRVDS--SGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHG 358
                 ++ G     +      PA  + CMY+ TPD  FV+D       +++V+  GFSGHG
Sbjct:   295 QDVHILSGFVRDHLPDLQPEPAVMEHCMYTNTPDGHFVLD--RHPKYDNIVIGAGFSGHG 352

Query:   359 FKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
             FK++PVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:   353 FKLSPVVGKILYELSMK-LTPSYDLTPFRISRFPSLGKAHL 392

GO:0005777 "peroxisome" evidence=IEA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0050031 "L-pipecolate oxidase activity" evidence=IEA

GO:0008115 "sarcosine oxidase activity" evidence=IEA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

UNIPROTKB|Q9P0Z9 PIPOX "Peroxisomal sarcosine oxidase" [Homo sapiens (taxid:9606)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 140/398 (35%), Positives = 209/398 (52%)

Query:     8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
             +D IV+GAGI G   AY LAK  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M
Sbjct:     8 WDAIVIGAGIQGCFTAYHLAKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRM 67

Query:    68 VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
             + E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ Q
Sbjct:    68 MHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQ 127

Query:   128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXXXX 187
             ++   I +P   VG+    GGVI   KA+   Q    + G ++RD  +V  +        
Sbjct:   128 RFPN-IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLGGIVRDGEKVVEI------NP 180

Query:   188 XXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247
                         +  K  V+TAG W  +L++ + G+E+P+Q +  +VCYWR  E     Y
Sbjct:   181 GLLVTVKTTSRSYQAKSLVITAGPWTNQLLRPL-GIEMPLQTLRINVCYWR--EMVPGSY 237

Query:   248 AVGGDFPSFASYG--DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS-- 301
              V   FP F   G    H+YG P+ EYPGL+K++ H G   DP+ R  P     + D   
Sbjct:   238 GVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQI 297

Query:   302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM 361
             L   ++           PA  + CMY+ TPD+ F++D       +++V+  GFSGHGFK+
Sbjct:   298 LSSFVRDHLPDLKPE--PAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKL 353

Query:   362 APVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
             APVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:   354 APVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0050031 "L-pipecolate oxidase activity" evidence=IDA;NAS

GO:0005777 "peroxisome" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0008115 "sarcosine oxidase activity" evidence=IDA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

UNIPROTKB|P79371 PIPOX "Peroxisomal sarcosine oxidase" [Oryctolagus cuniculus (taxid:9986)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 138/398 (34%), Positives = 207/398 (52%)

Query:     8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
             +D IV+GAGI G    Y L K  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M
Sbjct:     8 WDAIVIGAGIQGCFTVYHLVKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRM 67

Query:    68 VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
             + E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ Q
Sbjct:    68 MHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQ 127

Query:   128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXXXX 187
             ++   I +P   VG+    GGVI   KA+   Q    + G ++RD  +V  +        
Sbjct:   128 RFPN-IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLGGIVRDGEKVVEI------NP 180

Query:   188 XXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247
                         +  K  V+TAG W  +L++ + G+E+P+Q +  +VCYWR  E     Y
Sbjct:   181 GLLVTVKTTSRSYQAKSLVITAGPWTNQLLRPL-GIEMPLQTLRINVCYWR--EMVPGSY 237

Query:   248 AVGGDFPSFASYG--DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS-- 301
              V   FP F   G    H+YG P+ EYPGL+K++ H G   DP+ R  P     + D   
Sbjct:   238 GVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQI 297

Query:   302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM 361
             L   ++           PA  + CMY+ TPD+ F++D       +++V+  GFSGHGFK+
Sbjct:   298 LSSFVRDHLPDLKPE--PAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKL 353

Query:   362 APVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
             APVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:   354 APVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390

GO:0005777 "peroxisome" evidence=ISS

GO:0008115 "sarcosine oxidase activity" evidence=ISS

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=ISS

GO:0050031 "L-pipecolate oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

RGD|1311347 Pipox "pipecolic acid oxidase" [Rattus norvegicus (taxid:10116)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 132/398 (33%), Positives = 207/398 (52%)

Query:     8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
             +D IV+GAG+ G   AY LA+  +K LLLEQF   H RGSSHG+SR IR  YPED+Y  M
Sbjct:     8 WDAIVIGAGVQGCFTAYHLAQNSKKVLLLEQFLLPHSRGSSHGQSRIIRKAYPEDFYTRM 67

Query:    68 VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
             + E    W Q + E G +++ +     +G  EN  L+++ A+  +  + H+ L    + Q
Sbjct:    68 MDECYRTWAQLEREAGAQLHRRTELLFLGMKENPGLKTIQATLSRQGIDHECLSSVHLKQ 127

Query:   128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXXXX 187
             ++   I   +  VG+  + GGV+   KA+   Q +  + G ++ D  +V  +        
Sbjct:   128 RFPN-IRFTKGEVGLLDKTGGVLYADKALRALQHVIRQLGGMVCDGEKVVEIRPGLPVTV 186

Query:   188 XXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247
                       + +     V+TAG W  ++++ + G+ELP+Q +  +VCYWR K      Y
Sbjct:   187 KTTL------KSYQANSLVITAGPWTNRILRPL-GIELPLQTLRINVCYWREKV--PGSY 237

Query:   248 AVGGDFPSFASYG-DPH-VYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS-- 301
             +V   FP   S    PH +YG P+ EYPGL+K+  H G   DP+ R  P     + D   
Sbjct:   238 SVSQAFPCILSLDLAPHHIYGLPASEYPGLMKVCYHHGDSVDPEERDCPKTFSDIQDVQI 297

Query:   302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM 361
             L   ++    G      P   + CMY+ TPD+ F++D       +++V+  GFSGHGFK+
Sbjct:   298 LCHFVKDHLPGLRPE--PDIMERCMYTNTPDEHFILDC--HPKYDNIVIGAGFSGHGFKL 353

Query:   362 APVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
             AP VG++L +L +       +L  FRI+RF +  K ++
Sbjct:   354 APAVGKVLYELSMK-LPPSYDLAPFRISRFSKLSKAHL 390

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0008115 "sarcosine oxidase activity" evidence=IEA;ISO

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IEA;ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0050031 "L-pipecolate oxidase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

MGI|MGI:1197006 Pipox "pipecolic acid oxidase" [Mus musculus (taxid:10090)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 135/398 (33%), Positives = 202/398 (50%)

Query:     8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
             +D IV+GAGI G   AY LAK  +  LLLEQF   H RGSSHG+SR IR  YPED+Y  M
Sbjct:     8 WDAIVIGAGIQGCFTAYHLAKHSKSVLLLEQFFLPHSRGSSHGQSRIIRKAYPEDFYTMM 67

Query:    68 VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
             + E    W Q + E G +++ +     +G  EN  L+++ A+  +  + H+ L    + Q
Sbjct:    68 MKECYQTWAQLEREAGTQLHRQTELLLLGTKENPGLKTIQATLSRQGIDHEYLSSVDLKQ 127

Query:   128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXXXX 187
             ++   I      VG+  + GGV+   KA+   Q +  + G  + D  +V  +        
Sbjct:   128 RFPN-IRFTRGEVGLLDKTGGVLYADKALRALQHIICQLGGTVCDGEKVVEIRPGLPVTV 186

Query:   188 XXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247
                       + +     V+TAG W  +L+  + G+ELP+Q +  +VCYWR K      Y
Sbjct:   187 KTTL------KSYQANSLVITAGPWTNRLLHPL-GIELPLQTLRINVCYWREKV--PGSY 237

Query:   248 AVGGDFPSFASYG-DPH-VYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS-- 301
              V   FP        PH +YG P+ EYPGL+KI  H G   DP+ R  P     + D   
Sbjct:   238 GVSQAFPCILGLDLAPHHIYGLPASEYPGLMKICYHHGDNVDPEERDCPKTFSDIQDVQI 297

Query:   302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM 361
             L   ++    G    + P   + CMY+ TPD+ F++D       +++V+  GFSGHGFK+
Sbjct:   298 LCHFVRDHLPGL--RAEPDIMERCMYTNTPDEHFILDC--HPKYDNIVIGAGFSGHGFKL 353

Query:   362 APVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 399
             APVVG+IL +L +       +L  FR++RF    K ++
Sbjct:   354 APVVGKILYELSMK-LPPSYDLAPFRMSRFSTLSKAHL 390

GO:0005102 "receptor binding" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0008115 "sarcosine oxidase activity" evidence=ISO;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=ISO;ISS

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0050031 "L-pipecolate oxidase activity" evidence=ISO;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO;ISS

UNIPROTKB|E2R6W0 PIPOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 131/390 (33%), Positives = 197/390 (50%)

Query:     9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
             D IV+GAGI G   AY LAK  +K +LLEQF   H RGSSHG+SR IR  Y ED+Y  M+
Sbjct:     9 DAIVIGAGIQGCFTAYHLAKHRKKVILLEQFFLPHSRGSSHGQSRIIRRAYLEDFYTQMM 68

Query:    69 LESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQK 128
              E   +W Q + E   +++ +     +G  EN  L+++ A+  ++ V HQ     ++ Q+
Sbjct:    69 DECYQIWAQLEHEAETQLHRQTGLLMLGMKENSELKTIQATLSRHRVEHQYFSAEELKQR 128

Query:   129 YSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXXXXX 188
             +   +++    VG+  + GGV+   +A+   Q    + G  + D  +V  +         
Sbjct:   129 FPN-VQLARGEVGLLEKSGGVLYADRALRALQDAIRRLGGQVHDGEKVMEI------KPG 181

Query:   189 XXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYA 248
                        +  K  ++T G W  +L++ + G+ELP+Q +  +VCYW   E     Y 
Sbjct:   182 LPVIVKSTSRSYQAKSLIITVGPWTNRLLRPL-GIELPLQTLRINVCYW--PEKVPGSYG 238

Query:   249 VGGDFPSFA----SYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKE 304
             V   FP F     S    H+YG PS EYPGL+K+  H G   DP+ R   P    D    
Sbjct:   239 VSQAFPCFLVLDLSLTPHHIYGLPSGEYPGLMKVCYHHGNNADPEERDC-PEAFSDIQDV 297

Query:   305 LIQGRFAGR--VD-SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM 361
              I  RF      D    PA  + C+Y+ TPD   ++D       +++V+  GFSGHGFK+
Sbjct:   298 QILSRFIRDHLPDLEPKPAILEHCLYTNTPDGHCILD--RHPKYDNIVIGAGFSGHGFKL 355

Query:   362 APVVGRILADLVLSGEAQGVELRHFRIARF 391
             APVVG+IL +L +       +L  FR++RF
Sbjct:   356 APVVGKILCELSMK-LTPSYDLTPFRMSRF 384

GO:0050031 "L-pipecolate oxidase activity" evidence=IEA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IEA

GO:0008115 "sarcosine oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

WB|WBGene00015788 C15B12.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 114/395 (28%), Positives = 185/395 (46%)

Query:     5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYY 64
             G+ +DVIVVGAGI GS  AY   + G +TLLLEQ+   H  GSSHG+SR IR  + +  Y
Sbjct:     3 GKAYDVIVVGAGIFGSCTAYHCQRLGLRTLLLEQYSLGHSNGSSHGKSRIIRYAHTDPEY 62

Query:    65 HPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ 124
              P+V +S L  E+ + + G K++ K     +  +    + S+    +K+++ H+VL   +
Sbjct:    63 VPLVGDSYLQIEELEKKRGEKLWNKLGL--LWAATGNQVDSISGHLKKHNIDHEVLPGTK 120

Query:   125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXX 184
             + ++Y  + +  + W  +   +GGVI   K +  FQ   I  G  ++DN   + V+    
Sbjct:   121 ITERYP-QFKFDDKWTALIDPMGGVIYANKWLKAFQEEFITLGGTIQDN---EPVISYGE 176

Query:   185 XXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
                         GE +   K + T G W+ K    ++     I+ +  +VCYW  K+   
Sbjct:   177 TDNVIVNVKTSTGE-YKTNKIIFTVGCWITKFFPNVN---FQIKPISLAVCYWNAKDEKN 232

Query:   245 ADYAVGGDFPSFASYG---DPHVYGTPSLEYPGLIKIALHRGY-LCDPDRRPWGPGPLLD 300
                     FP   +       + +  P  +YPG IK+ L  G  L      P      L 
Sbjct:   233 NHLLDEKHFPVVIAKNLEKKEYFFALPDTDYPGAIKLVLDEGDDLAGDLSHPTKNNQELV 292

Query:   301 SLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360
             ++           +D S P     C Y+ +PD  ++I  +  E    ++V G  SG GFK
Sbjct:   293 TIPGSFIKDHIPVIDGSSPYKVDQCKYTNSPDHHYLIGPVSSE-NSKILVGGCGSGSGFK 351

Query:   361 MAPVVGRILADLVLSGEAQGVELRHFRIARFKENP 395
              AP +GR LA++  +G++  V++  F  +RF E P
Sbjct:   352 TAPGIGRSLAEMA-AGKSTTVDVTFFSPSRF-ETP 384

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D826	SOX_MOUSE	1, ., 5, ., 3, ., 7	0.3415	0.9249	0.9794	yes	no
Q827H4	MSOX_STRAW	1, ., 5, ., 3, ., 1	0.3120	0.8256	0.8880	yes	no
Q9P0Z9	SOX_HUMAN	1, ., 5, ., 3, ., 7	0.3592	0.9128	0.9666	yes	no
Q29RU9	SOX_BOVIN	1, ., 5, ., 3, ., 7	0.3587	0.9297	0.9795	yes	no
Q9SJA7	SOX_ARATH	1, ., 5, ., 3, ., 1	0.6787	0.9927	0.9855	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.5.3.1	0.824
3rd Layer	1.5.3	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
TIGR01377	380	TIGR01377, soxA_mon, sarcosine oxidase, monomeric	1e-169
PRK11259	376	PRK11259, solA, N-methyltryptophan oxidase; Provis	2e-89
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	3e-37
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-28
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	5e-13
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	2e-09
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	9e-08
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	2e-06
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	3e-06
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	6e-06
COG0445	621	COG0445, GidA, Flavin-dependent tRNA uridine 5-car	1e-05
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	1e-05
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	4e-05
PRK05192	618	PRK05192, PRK05192, tRNA uridine 5-carboxymethylam	4e-05
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	5e-05
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	1e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-04
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	1e-04
TIGR01373	407	TIGR01373, soxB, sarcosine oxidase, beta subunit f	1e-04
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	2e-04
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	3e-04
PRK05335	436	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransfe	3e-04
pfam01946	229	pfam01946, Thi4, Thi4 family	3e-04
COG1206	439	COG1206, Gid, NAD(FAD)-utilizing enzyme possibly i	3e-04
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	4e-04
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	5e-04
COG3573	552	COG3573, COG3573, Predicted oxidoreductase [Genera	7e-04
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	8e-04
PRK10015	429	PRK10015, PRK10015, oxidoreductase; Provisional	8e-04
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	8e-04
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	0.001
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	0.001
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.001
TIGR03378	419	TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate d	0.001
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.001
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	0.002
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	0.002
PLN02985	514	PLN02985, PLN02985, squalene monooxygenase	0.002
TIGR00136	617	TIGR00136, gidA, glucose-inhibited division protei	0.003
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	0.003
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	0.003
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	0.003
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	0.003
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	0.004

>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form

 Score =  477 bits (1230), Expect = e-169
 Identities = 167/394 (42%), Positives = 233/394 (59%), Gaps = 18/394 (4%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           FDVIVVGAGIMG  AAY LAK G+KTLLLEQFD  H RGSSHG+SR IR  YPED+Y PM
Sbjct: 1   FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPM 60

Query: 68  VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
           +LE   LW Q + E G K++ +     +GP EN+ L+++ A+  ++ + H++L  +Q+ Q
Sbjct: 61  MLECYQLWAQLEKEAGTKLHRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQ 120

Query: 128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR 187
           ++   I +P N VG+    GGV+   KA+   Q LA  +GA +RD T+V  +     +  
Sbjct: 121 RFP-NIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEI-----EPT 174

Query: 188 GGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY 247
             +  V ++   +   K VVTAGAW  KL+  + G+E+P+Q +  +VCYWR KE     Y
Sbjct: 175 ELLVTVKTTKGSYQANKLVVTAGAWTSKLLSPL-GIEIPLQPLRINVCYWREKEPGS--Y 231

Query: 248 AVGGDFPSFASYG-DPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPL---LDSLK 303
            V   FP F   G +PH+YG PS EYPGL+K+  H G   DPD R    G     +  L+
Sbjct: 232 GVSQAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILR 291

Query: 304 ELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAP 363
           + ++    G      P   ++CMY+ TPD+ FVID       ++VV+  GFSGHGFK+AP
Sbjct: 292 KFVRDHLPGLN--GEPKKGEVCMYTNTPDEHFVIDLHPKY--DNVVIGAGFSGHGFKLAP 347

Query: 364 VVGRILADLVLSGEAQGVELRHFRIARFKENPKG 397
           VVG+ILA+L +  +    +L  F + RF    K 
Sbjct: 348 VVGKILAELAMKLKP-SYDLAIFSLNRFALKKKA 380

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 380

>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional

 Score =  275 bits (705), Expect = 2e-89
 Identities = 140/398 (35%), Positives = 207/398 (52%), Gaps = 41/398 (10%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHP 66
           +DVIV+G G MGS+A Y LA+RG + L L++F   H +GSSHG++R IR  Y E   Y P
Sbjct: 4   YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVP 63

Query: 67  MVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
           +VL +  LW + + E G  ++ +    ++GP+++  L + I S R++ +PH+VLD  ++ 
Sbjct: 64  LVLRAQELWRELERESGEPLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIR 123

Query: 127 QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV 186
           +++     +P+ ++ +    GG ++P  A+     LA + GA L  N  V  +    +  
Sbjct: 124 RRFPQ-FRLPDGYIALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAI----EAD 178

Query: 187 RGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEAD 246
             GVTV T+ G  +  KK VV+AGAWV  L+     LELP+      V  W      +AD
Sbjct: 179 GDGVTVTTADG-TYEAKKLVVSAGAWVKDLL---PPLELPLT-PVRQVLAWF-----QAD 228

Query: 247 --YAVGGDFPSF-ASYGDP-HVYGTPSLEYPGLIKIALHRG--YLCDPDRRPWGPGPLLD 300
             Y+    FP+F     D    YG P+   PGL KI  H G   +  PD R       + 
Sbjct: 229 GRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGL-KIGKHNGGQEITSPDERD--RFVTVA 285

Query: 301 S----LKELIQGRFAGRVDSSGP---AATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGG 353
                L+  ++    G     GP    A   C Y+ TPD+ F+ID L G    +V+VA G
Sbjct: 286 EDGAELRPFLRNYLPG----VGPCLRGAA--CTYTNTPDEHFIIDTLPGH--PNVLVASG 337

Query: 354 FSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF 391
            SGHGFK A V+G ILADL   G +   +L  F ++RF
Sbjct: 338 CSGHGFKFASVLGEILADLAQDGTSD-FDLSPFSLSRF 374

Length = 376

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score =  139 bits (351), Expect = 3e-37
 Identities = 97/403 (24%), Positives = 144/403 (35%), Gaps = 36/403 (8%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-- 63
              DV+++G GI+G SAAY LA+RG    +LE  +     G++   +  I A +      
Sbjct: 3   MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG--GAAGRNAGGILAPWASPGGE 60

Query: 64  --YHPMVLESSLLWEQAQSEIGYKVYFKAH-----QFDMGPSENKSLRSVIASCRKNSVP 116
               P+   S  LW +   E+G     +           G      L  + A        
Sbjct: 61  LEVRPLADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGED 120

Query: 117 HQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAV-LRDNTE 175
            ++LD      +    +       G+    GG + P          A + G V +   T 
Sbjct: 121 AELLD-AAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTP 179

Query: 176 VKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVC 235
           V        +  G V  V + G      K V+ AGAW G+L   +  L LP++ V     
Sbjct: 180 V-----TSLERDGRVVGVETDGGTIEADKVVLAAGAWAGELAATLGELPLPLRPVRGQAL 234

Query: 236 YWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYL--CDPDRRPW 293
                EG  AD              D   Y  P  +    +      G     DP+R   
Sbjct: 235 TTEPPEGLLADGLAPVVLVVD----DGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDL 290

Query: 294 GPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMT-PDKDFVIDFLGGELGEDVVVAG 352
               LL   + L+ G     ++     A    +   T PD   VI         ++ VA 
Sbjct: 291 VIAELLRVARALLPGLADAGIE-----AAWAGLRPPTTPDGLPVIGRAAP--LPNLYVAT 343

Query: 353 GFSGHGFKMAPVVGRILADLVLSGE----AQGVELRHFRIARF 391
           G  GHGF +AP +GR+LADL+L GE     + + L  F   R 
Sbjct: 344 GHGGHGFTLAPALGRLLADLILGGEPELDLRPLLLDRFAPGRR 386

Length = 387

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score =  110 bits (277), Expect = 3e-28
 Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 16/207 (7%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY---PEDYYH 65
           DV+V+G GI+G S AY+LA+RG    LLE+ D     G+S   +  +             
Sbjct: 1   DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS--GASGRNAGLLHPGLRKERAPLLA 58

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAH---QFDMGPSENKSLRSVIASCRKNSVPHQVLDC 122
            + LES  LW +   E+G    F+           +E  +LR + A+ R   +P ++LD 
Sbjct: 59  RLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDA 118

Query: 123 RQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKV 182
            ++ +   G    P    G+    GG + P + +      A   G  + + TEV  + + 
Sbjct: 119 EELRELEPGL--SPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLERE 176

Query: 183 KDDVRGGVTVVTSSGEEFWGKKCVVTA 209
                GGVTV T  GE       VV A
Sbjct: 177 G----GGVTVETEDGE--IRADKVVNA 197

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 56/219 (25%), Positives = 89/219 (40%), Gaps = 31/219 (14%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           +DV+++G GIMG++ AY+L++        LLE+ D +  + SS   S  I A     YY 
Sbjct: 4   YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV-AQESSSNNSGVIHAGL---YYT 59

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFD----------MGPSENKSLRSVIASCRKNSV 115
           P  L++ L      +E       K                G  E + L  +    + N V
Sbjct: 60  PGSLKAKLCVAGNINE---FAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGV 116

Query: 116 PH-QVLDCRQVLQKYSGRIE---IPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLR 171
              ++LD  ++ +      E          +    GG++ P +        A  NG  LR
Sbjct: 117 FDLEILDKEEIKEL-----EPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELR 171

Query: 172 DNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAG 210
            NTEV   ++ + D  G   + TS+GEE    K V+ A 
Sbjct: 172 LNTEVTG-IEKQSD--GVFVLNTSNGEETLEAKFVINAA 207

Length = 429

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 57/235 (24%), Positives = 88/235 (37%), Gaps = 31/235 (13%)

Query: 1   MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH--RGSS---HGESRTI 55
                E FDVIV+G GI G+  A   A RG K  L+E+ D        S+   HG  R +
Sbjct: 6   TRLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYL 65

Query: 56  RATYPEDYYHPMVLESSLLWEQAQSEI--------GYKVYFKAHQFDMGPSENKSLRSVI 107
              Y        + E  +L   A   +               A     G      L   +
Sbjct: 66  -EQYEFSLVREALAEREVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAG----LFLYDHL 120

Query: 108 ASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG 167
           A  RK     +VLD ++ L      ++  +   G      GV+   + V+     A ++G
Sbjct: 121 AGIRKLLPASRVLDPKEALPLEPA-LK-KDGLKGAFRYPDGVVDDARLVAANARDAAEHG 178

Query: 168 AVLRDNTEVKTVLKVKDDVRGGVTVV----TSSGEEF-WGKKCVV-TAGAWVGKL 216
           A +   T V+++ +      GGV  V      +GE +    + VV  AG WV ++
Sbjct: 179 AEILTYTRVESLRR-----EGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEI 228

Length = 532

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
            +DV++VGAG  GSSAA +LAK G   L+LE+   
Sbjct: 2  MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37

Length = 396

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          +DV+VVGAG  G+SAAY+LA +G + LLLE+  F
Sbjct: 1  YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          DV+VVG G  G +AA   A+ G K LL+E+  +L
Sbjct: 1  DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWL 34

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 47.5 bits (114), Expect = 6e-06
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          DVIV+G G  G  AA   A+ G K LL+
Sbjct: 1  DVIVIGGGHAGCEAALAAARMGAKVLLI 28

Length = 391

>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 5  GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
           + +DVIV+G G  G  AA   A+ G KTLLL
Sbjct: 2  PKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33

Length = 621

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           + DVIVVGAG+ G  AA +LA  G++ LLL+Q
Sbjct: 3  MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ 35

Length = 549

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          +VGAG+ G  AAY LAKRG+  L+LE+ D +
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31

Length = 66

>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

 Score = 45.4 bits (109), Expect = 4e-05
 Identities = 18/31 (58%), Positives = 20/31 (64%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          E +DVIVVG G  G  AA   A+ G KTLLL
Sbjct: 3  EEYDVIVVGGGHAGCEAALAAARMGAKTLLL 33

Length = 618

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +++     DV +VGAG  G +AAY LAK G K  + E+
Sbjct: 21 LDYL--EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56

Length = 257

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DVI+VGAG  G +AAY LAK G K  + E+
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61

Length = 262

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYH 65
          +VG GI G +AAY+LAKRG +  + E  D L    +S           P E +YH
Sbjct: 4  IVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-----FGGLPIERFYH 53

Length = 434

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 22/30 (73%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DV+V+G+G+ G +AA + A+ G K  ++E+
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEK 30

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family, heterotetrameric form

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 83/341 (24%), Positives = 130/341 (38%), Gaps = 67/341 (19%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESRTI-RATYPEDYYH 65
           +DVI+VG G  G + AY LAK  G   + + +  +L   G + G + TI R+ Y      
Sbjct: 31  YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG--GGNTGRNTTIVRSNYLYPESA 88

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKA----------HQFDMGPSENKSLRSVIASCRKNSV 115
            +   +  LWE    ++ Y V F               D G       R V A  R N V
Sbjct: 89  ELYEHAMKLWEGLSQDLNYNVMFSQRGVLNLCHSTADMDDGA------RRVNAM-RLNGV 141

Query: 116 PHQVLDCRQVLQ-----KYSGRIEIPENWVGVTTE-LGGVIKPTKAVSMFQTLAIKNGAV 169
             ++L   QV +      +S     P   VG   +  GG  +       +   A + G  
Sbjct: 142 DAELLSPEQVRRVIPILDFSPDARFPV--VGGLLQRRGGTARHDAVAWGYARGADRRGVD 199

Query: 170 LRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQA 229
           +  N EV   ++       GV   T+ G  F G K V  A A    +V  ++G  LPI++
Sbjct: 200 IIQNCEVTGFIRRDGGRVIGVE--TTRG--FIGAKKVGVAVAGHSSVVAAMAGFRLPIES 255

Query: 230 ------------------VETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLE 271
                             V ++  ++ + + D+ +  +GG    + SY        P+LE
Sbjct: 256 HPLQALVSEPLKPIIDTVVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRG--NLPTLE 313

Query: 272 ---------YPGLIKIALHR--GYLCD--PDRRP-WGPGPL 298
                    +P L ++ + R  G + D  PD  P  G  PL
Sbjct: 314 HVLAAILEMFPILSRVRMLRSWGGIVDVTPDGSPIIGKTPL 354

This model describes the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +DV+V+GAG+ G +AA  LA+ G K  +LE+
Sbjct: 4  YDVVVIGAGLNGLAAAALLARAGLKVTVLEK 34

Length = 487

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 2  EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
            +  ++DVI+VG  I G   A  L+K+G+K L+LE+
Sbjct: 28 ARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64

Length = 567

>gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed

 Score = 42.4 bits (101), Expect = 3e-04
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          V V+GAG+ GS AA+QLAKRG    L E
Sbjct: 5  VNVIGAGLAGSEAAWQLAKRGVPVELYE 32

Length = 436

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DV++VGAG  G +AAY LAK+G K  ++E+
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIER 48

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|224127 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          + V+GAG+ GS AA+Q+AKRG   +L E
Sbjct: 6  INVIGAGLAGSEAAWQIAKRGVPVILYE 33

Length = 439

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           FDV+VVG G++G+S A  LA+ G +  LL  
Sbjct: 5  KFDVVVVGGGLVGASLALALAQSGLRVALLAP 36

Length = 388

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           FD ++VGAG+ G+  A   A+ G++ L++E+
Sbjct: 1  MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEK 32

Length = 374

>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 5  GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          G   DVIVVGAG+ G  AA +LA  G++ L+L+Q
Sbjct: 3  GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQ 36

Length = 552

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           FDV+V+G G  G  AA + A+ G K  LL 
Sbjct: 6  EFDVVVIGGGGAGLRAAIEAAEAGLKVALLS 36

Length = 562

>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)

Query: 4  SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50
          S + FD IVVGAG+ GS AA  +A+ G   L++E       RG S G
Sbjct: 2  SDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIE-------RGDSAG 41

Length = 429

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           DV +VGAG  G + A  LA+ G    LLE+
Sbjct: 3  LDVAIVGAGPAGLALALALARAGLDVTLLER 33

Length = 387

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39
          +D IV+G+GI G   A QLA +G K L+LE++
Sbjct: 1  YDAIVIGSGIGGLVTATQLAVKGAKVLVLERY 32

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          + +DV+V+GAG  G  AA + A+ G K  L+E+
Sbjct: 3  KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEK 35

Length = 454

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           D  ++G GI G++ A  LA+RG +  L E 
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYEA 291

Length = 662

>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          FDVI++G G+ G S A +LA+ G+K  ++  
Sbjct: 1  FDVIIIGGGLAGLSCALRLAEAGKKCAIIAA 31

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase [Energy metabolism, Anaerobic]. Length = 419

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DVI+VGAG  G +AAY LAK G K  +LE+
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLER 52

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          M      +D ++VG+G  GS  A +L+  G   L+LE
Sbjct: 1  MSEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLE 37

Length = 542

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          E FDVI++G G  G  AA   AK G++ LL+++
Sbjct: 2  ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDK 34

Length = 408

>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DVI+VGAG+ GS+ AY LAK G++  ++E+
Sbjct: 45 DVIIVGAGVGGSALAYALAKDGRRVHVIER 74

Length = 514

>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          FDVIV+G G  G  AA   A+ G KTLLL
Sbjct: 1  FDVIVIGGGHAGCEAALAAARMGAKTLLL 29

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137) [Protein synthesis, tRNA and rRNA base modification]. Length = 617

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 7/43 (16%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50
          FD I+VGAG+ GS AA  LA+ G + L++E       RG+S G
Sbjct: 6  FDAIIVGAGLAGSVAALVLAREGAQVLVIE-------RGNSAG 41

Length = 428

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          V + GAG+ G +AAY+LA  G    L E  D L
Sbjct: 3  VAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35

Length = 485

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           +DVIV+G G  G  AA + A+ G K  L+E+
Sbjct: 1  AYDVIVIGGGPGGYVAAIRAAQLGLKVALVEK 32

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
           FDV+V+G G+ G +AA   A+ G++  L+
Sbjct: 2  KFDVLVIGGGLAGLTAALAAAEAGKRVALV 31

Length = 422

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          D+I+VGAGI+G + AY  A+RG    ++E+
Sbjct: 2  DLIIVGAGILGLAHAYAAARRGLSVTVIER 31

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	100.0
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	100.0
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	100.0
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	100.0
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	100.0
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	100.0
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	100.0
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	100.0
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	100.0
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	100.0
KOG2853	509	consensus Possible oxidoreductase [General functio	100.0
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	100.0
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	100.0
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	100.0
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	100.0
PRK11728	393	hydroxyglutarate oxidase; Provisional	100.0
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	100.0
COG0579	429	Predicted dehydrogenase [General function predicti	99.97
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.97
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.97
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.97
KOG2852	380	consensus Possible oxidoreductase [General functio	99.97
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.95
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	99.94
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.93
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.93
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	99.93
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.92
PRK05257	494	malate:quinone oxidoreductase; Validated	99.9
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	99.87
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.81
PRK10157	428	putative oxidoreductase FixC; Provisional	99.77
PRK06185	407	hypothetical protein; Provisional	99.75
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.71
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.7
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.69
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.69
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.68
COG2081	408	Predicted flavoproteins [General function predicti	99.68
PRK06834	488	hypothetical protein; Provisional	99.68
PRK06847	375	hypothetical protein; Provisional	99.68
PRK08244	493	hypothetical protein; Provisional	99.67
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.67
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.66
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.66
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.65
PLN02697	529	lycopene epsilon cyclase	99.65
PRK06184	502	hypothetical protein; Provisional	99.65
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.65
PRK07190	487	hypothetical protein; Provisional	99.64
PRK08163	396	salicylate hydroxylase; Provisional	99.64
PRK10015	429	oxidoreductase; Provisional	99.63
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.62
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.6
PRK08013	400	oxidoreductase; Provisional	99.6
PRK06126	545	hypothetical protein; Provisional	99.6
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.6
PRK09126	392	hypothetical protein; Provisional	99.6
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.59
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.59
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.58
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.58
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.57
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.57
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.57
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.56
PRK07045	388	putative monooxygenase; Reviewed	99.56
PRK06996	398	hypothetical protein; Provisional	99.54
PLN02463	447	lycopene beta cyclase	99.54
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.53
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.53
PRK08294	634	phenol 2-monooxygenase; Provisional	99.52
PRK07588	391	hypothetical protein; Provisional	99.51
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.51
PRK11445	351	putative oxidoreductase; Provisional	99.51
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.51
PRK05868	372	hypothetical protein; Validated	99.5
PRK06753	373	hypothetical protein; Provisional	99.5
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.5
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.49
PRK08274	466	tricarballylate dehydrogenase; Validated	99.48
PRK07538	413	hypothetical protein; Provisional	99.48
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.47
PRK07233	434	hypothetical protein; Provisional	99.45
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.45
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.43
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.43
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.42
PRK06475	400	salicylate hydroxylase; Provisional	99.41
PRK07121	492	hypothetical protein; Validated	99.39
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.39
PLN02985	514	squalene monooxygenase	99.38
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.38
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.38
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.38
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.38
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.37
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.35
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.35
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.35
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.34
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.34
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.34
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.34
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.34
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.34
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.33
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.33
PRK06175	433	L-aspartate oxidase; Provisional	99.32
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.31
PLN02612	567	phytoene desaturase	99.31
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.31
PRK07804	541	L-aspartate oxidase; Provisional	99.31
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.31
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.31
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.3
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.3
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.3
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.3
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.3
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.3
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.29
PRK07236	386	hypothetical protein; Provisional	99.29
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.28
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.28
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.28
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.28
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.27
PRK08275	554	putative oxidoreductase; Provisional	99.27
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.27
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.26
PRK07208	479	hypothetical protein; Provisional	99.25
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.25
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.25
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.25
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.25
PLN02487	569	zeta-carotene desaturase	99.24
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.24
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.23
PRK08071	510	L-aspartate oxidase; Provisional	99.23
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.22
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.22
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.21
PRK07512	513	L-aspartate oxidase; Provisional	99.21
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.21
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.21
PRK12839	572	hypothetical protein; Provisional	99.2
PLN02815	594	L-aspartate oxidase	99.2
PRK08401	466	L-aspartate oxidase; Provisional	99.2
PRK06116	450	glutathione reductase; Validated	99.2
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.19
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.19
PTZ00367	567	squalene epoxidase; Provisional	99.18
PRK07395	553	L-aspartate oxidase; Provisional	99.18
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.17
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.17
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.17
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.16
PLN02576	496	protoporphyrinogen oxidase	99.15
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.15
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.15
PRK06370	463	mercuric reductase; Validated	99.15
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.14
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.14
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.14
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.13
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.13
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.13
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.12
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.12
PRK09077	536	L-aspartate oxidase; Provisional	99.12
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.12
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.1
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.09
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.09
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.09
PLN02268	435	probable polyamine oxidase	99.09
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.08
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.08
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.08
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.08
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.07
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.07
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.07
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.07
PLN02661	357	Putative thiazole synthesis	99.07
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	99.07
PLN02676	487	polyamine oxidase	99.07
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.06
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.06
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.06
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.05
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.05
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.03
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.02
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.02
PRK14694	468	putative mercuric reductase; Provisional	99.02
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.02
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.02
PLN02507	499	glutathione reductase	99.01
PRK14727	479	putative mercuric reductase; Provisional	99.01
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.0
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.0
PLN02568	539	polyamine oxidase	99.0
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.99
PLN02546	558	glutathione reductase	98.99
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.98
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.97
PTZ00058	561	glutathione reductase; Provisional	98.97
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.97
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.96
PRK13748	561	putative mercuric reductase; Provisional	98.95
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.95
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.95
TIGR02053	463	MerA mercuric reductase. This model represents the	98.93
PRK02106	560	choline dehydrogenase; Validated	98.93
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.93
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.92
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.91
PTZ00052	499	thioredoxin reductase; Provisional	98.91
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.9
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.89
PRK10262	321	thioredoxin reductase; Provisional	98.89
PRK09897	534	hypothetical protein; Provisional	98.88
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.86
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.83
PLN02529	738	lysine-specific histone demethylase 1	98.8
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.79
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.79
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.78
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.77
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.76
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.76
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.75
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.74
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.74
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.72
PLN03000	881	amine oxidase	98.71
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.7
PRK07846	451	mycothione reductase; Reviewed	98.66
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.65
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.63
COG3573	552	Predicted oxidoreductase [General function predict	98.6
PLN02785	587	Protein HOTHEAD	98.6
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.58
COG3349	485	Uncharacterized conserved protein [Function unknow	98.58
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.58
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.55
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.54
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.53
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.53
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.52
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.52
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.5
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.49
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.48
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.46
PLN02976	1713	amine oxidase	98.44
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.42
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	98.4
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.39
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.37
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.37
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.35
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	98.34
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.33
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.32
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.32
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.29
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.29
PLN02507	499	glutathione reductase	98.29
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.28
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.27
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.27
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.27
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.26
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.24
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.24
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.24
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.24
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.23
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.2
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.18
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.18
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.17
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.14
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.13
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.1
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.09
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.08
PTZ00058	561	glutathione reductase; Provisional	98.06
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.03
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.02
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.01
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.01
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.97
PRK12831	464	putative oxidoreductase; Provisional	97.96
PLN02546	558	glutathione reductase	97.91
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.9
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.9
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.9
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.89
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.87
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.86
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.84
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.84
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.84
PLN02852	491	ferredoxin-NADP+ reductase	97.83
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.75
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.74
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.73
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.7
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.7
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.67
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.65
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.64
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.64
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.63
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.59
PTZ00188	506	adrenodoxin reductase; Provisional	97.59
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.57
PRK10262	321	thioredoxin reductase; Provisional	97.5
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.47
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.46
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	97.43
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.42
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.42
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.38
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.36
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.32
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.27
PRK13984	604	putative oxidoreductase; Provisional	97.25
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.21
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.21
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.2
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.07
PRK12831	464	putative oxidoreductase; Provisional	97.06
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.02
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.9
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.89
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.66
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.63
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.48
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.48
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.44
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.44
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.41
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.3
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.3
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.24
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.19
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.15
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.13
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.07
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.04
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.96
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.96
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.93
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.93
PRK12779	944	putative bifunctional glutamate synthase subunit b	95.86
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	95.85
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.81
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.74
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.63
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.59
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.56
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.55
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.54
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.51
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.42
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.42
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.4
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.31
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.31
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.26
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.25
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.25
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.24
PRK07846	451	mycothione reductase; Reviewed	95.21
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.21
PRK06370	463	mercuric reductase; Validated	95.21
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.19
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.17
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.16
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.15
TIGR02053	463	MerA mercuric reductase. This model represents the	95.13
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.1
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.06
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.06
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.04
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.03
KOG2755	334	consensus Oxidoreductase [General function predict	95.0
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.96
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.94
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.91
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.9
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.9
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	94.86
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.85
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.68
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.68
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.62
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.61
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.53
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.52
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.5
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	94.49
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.47
PRK04148	134	hypothetical protein; Provisional	94.44
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	94.41
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.4
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	94.36
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	94.36
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	94.36
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.35
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.35
PRK07417	279	arogenate dehydrogenase; Reviewed	94.24
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.2
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.15
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.14
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.13
PRK13984	604	putative oxidoreductase; Provisional	94.13
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.1
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.06
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.06
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.99
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	93.94
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.92
PRK06116	450	glutathione reductase; Validated	93.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.89
PTZ00052	499	thioredoxin reductase; Provisional	93.88
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.87
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.87
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.81
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.81
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.75
PRK14694	468	putative mercuric reductase; Provisional	93.73
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.73
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.71
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	93.7
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.69
PRK14727	479	putative mercuric reductase; Provisional	93.67
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.67
PRK06223	307	malate dehydrogenase; Reviewed	93.65
PRK13748	561	putative mercuric reductase; Provisional	93.61
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	93.61
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.6
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.58
PRK06567	1028	putative bifunctional glutamate synthase subunit b	93.58
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.55
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.54
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.45
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.4
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	93.39
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.25
PRK08328	231	hypothetical protein; Provisional	93.25
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.17
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	93.11
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.09
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.09
PLN02852	491	ferredoxin-NADP+ reductase	93.02
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	93.0
PTZ00117	319	malate dehydrogenase; Provisional	92.94
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.85
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.82
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.81
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.8
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.72
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.7
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.68
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	92.67
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.64
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	92.59
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.52
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	92.45
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.3
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	92.29
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	92.26
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.25
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.25
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.24
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.22
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.2
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.18
PRK08223	287	hypothetical protein; Validated	92.17
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.15
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.13
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	92.08
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	92.08
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	92.06
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	92.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	91.93
PRK12828	239	short chain dehydrogenase; Provisional	91.86
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.85
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	91.84
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	91.82
PLN02602	350	lactate dehydrogenase	91.8
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.78

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=100.00  E-value=1e-48  Score=366.19  Aligned_cols=375  Identities=45%  Similarity=0.776  Sum_probs=299.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeE
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVY   87 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (413)
                      +||+|||||++|+++|++|+++|++|+|||+....++.+++....+.++..+....+.++..++.++|+++.+..+.+++
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~   80 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH   80 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence            68999999999999999999999999999998765444555556666666666666678889999999999988887776


Q ss_pred             eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcC
Q 015072           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG  167 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  167 (413)
                      ...+.+.+...+.+.++...+.++..+.+.++++.+++.+++|. ++......+++.+.+++++|..+++.|.+.+.+.|
T Consensus        81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~-l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g  159 (380)
T TIGR01377        81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPN-IRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHG  159 (380)
T ss_pred             eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCC-CcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcC
Confidence            67777776544445667777778888999999999999999998 66555667899999999999999999999999999


Q ss_pred             CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCcccc
Q 015072          168 AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADY  247 (413)
Q Consensus       168 v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~  247 (413)
                      ++++.+++|+++..  +  ++.+.|.+++++ +.+|.||+|+|+|+..+.+.+ +..+|+.+.++++..++........+
T Consensus       160 ~~~~~~~~V~~i~~--~--~~~~~v~~~~~~-i~a~~vV~aaG~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  233 (380)
T TIGR01377       160 ATVRDGTKVVEIEP--T--ELLVTVKTTKGS-YQANKLVVTAGAWTSKLLSPL-GIEIPLQPLRINVCYWREKEPGSYGV  233 (380)
T ss_pred             CEEECCCeEEEEEe--c--CCeEEEEeCCCE-EEeCEEEEecCcchHHHhhhc-ccCCCceEEEEEEEEEecCCccccCc
Confidence            99999999999988  6  455777777774 999999999999999888877 88899999999988887543221111


Q ss_pred             ccCCCCceEEecCC-CeeEecCCCCCCCeEEEEeCCCCcCCCCCCCC---CCCcchHHHHHHHHhhcCCCCCCCCCceee
Q 015072          248 AVGGDFPSFASYGD-PHVYGTPSLEYPGLIKIALHRGYLCDPDRRPW---GPGPLLDSLKELIQGRFAGRVDSSGPAATQ  323 (413)
Q Consensus       248 ~~~~~~~~~~~~~~-~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~  323 (413)
                      .  ..+|.+...+. ..+|..|..+..+++.++...+...++....+   .....++.+.+.+.+++|.+.+.  ....|
T Consensus       234 ~--~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~--~~~~~  309 (380)
T TIGR01377       234 S--QAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNGE--PKKGE  309 (380)
T ss_pred             c--CCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCCC--cceee
Confidence            1  13566554432 35888888655566655543332223322222   11226888899999999999853  46779


Q ss_pred             eeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccCCCCC
Q 015072          324 LCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPK  396 (413)
Q Consensus       324 ~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~~~  396 (413)
                      .|++++|||+.|+||++|..  +|+|+++||+|+|+++||++|+++|++|.++++ ..++++|+|+||..+++
T Consensus       310 ~~~~~~t~D~~piIg~~p~~--~~l~va~G~~g~G~~~~p~~g~~la~li~~~~~-~~~~~~f~~~Rf~~~~~  379 (380)
T TIGR01377       310 VCMYTNTPDEHFVIDLHPKY--DNVVIGAGFSGHGFKLAPVVGKILAELAMKLKP-SYDLAIFSLNRFALKKK  379 (380)
T ss_pred             EEEeccCCCCCeeeecCCCC--CCEEEEecCCccceeccHHHHHHHHHHHhcCCC-CCCccccChhhcccCCC
Confidence            99999999999999999988  999999999999999999999999999996665 67899999999988764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=100.00  E-value=7.7e-49  Score=331.63  Aligned_cols=389  Identities=38%  Similarity=0.627  Sum_probs=332.8

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (413)
                      |..|.+..|++|||||+-|+++|++|+++|.+++++|+-+.++..++|++.+.+++..|.+..+..+..++.+.|.++..
T Consensus         1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~   80 (399)
T KOG2820|consen    1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE   80 (399)
T ss_pred             CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence            33456779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHH
Q 015072           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      ..+..+....+.+.....+...+......++..++..+.++.++++++||..+.+++.+.++..+.+|++++.+-++.+.
T Consensus        81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~  160 (399)
T KOG2820|consen   81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ  160 (399)
T ss_pred             hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence            88887766666666666666778888888889999999999999999999548889999999999999999999999999


Q ss_pred             HHHHHcCCeEecCceEEEEEeeecc-CCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEe
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDD-VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRI  239 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~  239 (413)
                      ..+++.|+.++.+..|+.++.  .+ .+..+.|.|.+|..+.|+++|+|+|+|.+.+++...++..|+.+.+-.+-+|+.
T Consensus       161 ~~~~~~G~i~~dg~~v~~~~~--~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~ltvcywk~  238 (399)
T KOG2820|consen  161 DKARELGVIFRDGEKVKFIKF--VDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQLTVCYWKT  238 (399)
T ss_pred             HHHHHcCeEEecCcceeeEee--ccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeEeehhhhee
Confidence            999999999999999999986  43 246788999999999999999999999999999866889999999999888886


Q ss_pred             cCCCccccccCCCCceEEecCCC--eeEecCCCCCCCeEEEEeCCCC---cCCCCCCCCCCCc-chHHHHHHHHhhcCCC
Q 015072          240 KEGDEADYAVGGDFPSFASYGDP--HVYGTPSLEYPGLIKIALHRGY---LCDPDRRPWGPGP-LLDSLKELIQGRFAGR  313 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~~~~~~p~~  313 (413)
                      ..+.+.-+..+...++|...++.  +.|..|..+++|++....+.+.   ..+|+...+.+.. .++...+.++++.|.+
T Consensus       239 ~~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l  318 (399)
T KOG2820|consen  239 KKNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDL  318 (399)
T ss_pred             ecCCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCccc
Confidence            65544334445567777777777  7899999999999888887663   4455555555544 5555666677888999


Q ss_pred             CCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCC-CccccccccccccC
Q 015072          314 VDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEA-QGVELRHFRIARFK  392 (413)
Q Consensus       314 ~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~-~~~~~~~~~~~R~~  392 (413)
                      .+. .++....|++..|||...+|+.+|..  .|+|+++|.+|||+.++|.+|+++|+++++..+ ...+.+.|+.+||.
T Consensus       319 ~~~-~p~~t~~C~YT~TpD~~FviD~~P~~--~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~~~e~~~d~~~f~~~rf~  395 (399)
T KOG2820|consen  319 DDR-SPINTKMCMYTDTPDANFVIDKHPQY--DNVFVGGGGSGHGFKFAPNIGKYLAEMAMGDLSEEWVDAWRFREDRFE  395 (399)
T ss_pred             cCC-CcceeeEEEeeCCCCcCeeeecCCCc--ccEEEecCCCCcceeecchHHHHHHHHhhhcccccceehhhhhhhhcc
Confidence            874 67888999999999999999999998  899999999999999999999999999983333 25667888888886


Q ss_pred             CC
Q 015072          393 EN  394 (413)
Q Consensus       393 ~~  394 (413)
                      ..
T Consensus       396 ~~  397 (399)
T KOG2820|consen  396 SE  397 (399)
T ss_pred             cc
Confidence            54

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=100.00  E-value=5.6e-46  Score=347.13  Aligned_cols=367  Identities=35%  Similarity=0.621  Sum_probs=287.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccC-CccccchHHHHHHHHHHHHHhcCCe
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      ++||+|||||++|+++|++|+++|++|+|||++..+++.+++++..+.++..+. ...+.++...+.+.|.++.+..+.+
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~   82 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGEP   82 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCCc
Confidence            589999999999999999999999999999998776545566666666655443 3456678889999999998888877


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      ++...+.+.+.....+.++...+.+++.+++.++++.+++.+++|. ++......+++.+.+++++|.+++..+.+.+.+
T Consensus        83 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~-l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~  161 (376)
T PRK11259         83 LFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQ-FRLPDGYIALFEPDGGFLRPELAIKAHLRLARE  161 (376)
T ss_pred             cEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCC-CcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH
Confidence            6667787777655555556667777888999999999999999998 655556678999999999999999999999999


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCcc
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEA  245 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~  245 (413)
                      .|++++++++|+++..  +  ++.+.|++++|+ +.+|+||+|+|+|+..++..+   .+|+.+.+++++.++....   
T Consensus       162 ~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~-~~a~~vV~A~G~~~~~l~~~~---~~~i~~~~~~~~~~~~~~~---  230 (376)
T PRK11259        162 AGAELLFNEPVTAIEA--D--GDGVTVTTADGT-YEAKKLVVSAGAWVKDLLPPL---ELPLTPVRQVLAWFQADGR---  230 (376)
T ss_pred             CCCEEECCCEEEEEEe--e--CCeEEEEeCCCE-EEeeEEEEecCcchhhhcccc---cCCceEEEEEEEEEecCCc---
Confidence            9999999999999998  6  456778888885 999999999999998887753   5789999999988764321   


Q ss_pred             ccccCCCCceEEe--cCCCeeEecCCCCCCCeEEEEeCCCC-cCCCCCCCCCC--CcchHHHHHHHHhhcCCCCCCCCCc
Q 015072          246 DYAVGGDFPSFAS--YGDPHVYGTPSLEYPGLIKIALHRGY-LCDPDRRPWGP--GPLLDSLKELIQGRFAGRVDSSGPA  320 (413)
Q Consensus       246 ~~~~~~~~~~~~~--~~~~~~~~~p~~~~~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~l~~~~~~~~p~~~~~~~~~  320 (413)
                       +.....+|.+..  ..+..+|.+|..+.++++.++...+. ..++...+...  ....+.+.+.+.++||.+.+   ..
T Consensus       231 -~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~---~~  306 (376)
T PRK11259        231 -YSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP---CL  306 (376)
T ss_pred             -cCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc---cc
Confidence             111112454432  22334788888664444444433211 11222211111  22688899999999998774   57


Q ss_pred             eeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccC
Q 015072          321 ATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFK  392 (413)
Q Consensus       321 ~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~  392 (413)
                      ..|+|+|++|||+.|+||++|..  +|+|+++||+|+|+++||++|+.+|++|+++++ ..+++.|+|+||.
T Consensus       307 ~~~~g~~~~t~D~~P~ig~~~~~--~gl~~~~G~~g~G~~~ap~~g~~la~li~~~~~-~~~~~~~~~~Rf~  375 (376)
T PRK11259        307 RGAACTYTNTPDEHFIIDTLPGH--PNVLVASGCSGHGFKFASVLGEILADLAQDGTS-DFDLSPFSLSRFA  375 (376)
T ss_pred             cceEEecccCCCCCceeecCCCC--CCEEEEecccchhhhccHHHHHHHHHHHhcCCC-CCCcCccCccccc
Confidence            78999999999999999999987  999999999999999999999999999996664 6789999999986

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=100.00  E-value=1.9e-44  Score=339.64  Aligned_cols=366  Identities=20%  Similarity=0.226  Sum_probs=280.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~-~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      ..+||+|||||++|+++|++|+++ |. +|+|+|+...+  .++|..+.+.++..+..+....+...+.+.|.++.+..+
T Consensus        29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~--~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~  106 (407)
T TIGR01373        29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG--GGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLN  106 (407)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc--CcccccccceeeecccCccccHHHHHHHHHHHHHHHHhC
Confidence            568999999999999999999996 85 99999998755  357777788888776655566788889999999999888


Q ss_pred             Cee-EeeeeeeeeCCCC--hHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCC-----CCeEEEEecCCeeecHHHH
Q 015072           84 YKV-YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIP-----ENWVGVTTELGGVIKPTKA  155 (413)
Q Consensus        84 ~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~  155 (413)
                      .++ +.+.+.+.+...+  .+.+....+.++..|++.++++.+++.+++|. ++..     ....+++.+.++.++|..+
T Consensus       107 ~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~-l~~~~~~~~~~~ga~~~~~~g~v~p~~l  185 (407)
T TIGR01373       107 YNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPI-LDFSPDARFPVVGGLLQRRGGTARHDAV  185 (407)
T ss_pred             CCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCC-CccccccccceeEEEEcCCCCcCCHHHH
Confidence            776 5567777765432  33445556666778999999999999999998 6543     2356788899999999999


Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEE
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVC  235 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~  235 (413)
                      +..|.+.+.+.|++++.+++|+++..  .+++..+.|++++|+ +.+++||+|+|+|+..+.+.+ +..+|+.+.+++++
T Consensus       186 ~~~l~~~a~~~Gv~~~~~~~V~~i~~--~~~~~~~~v~t~~g~-i~a~~vVvaagg~~~~l~~~~-g~~~~~~~~~~~~~  261 (407)
T TIGR01373       186 AWGYARGADRRGVDIIQNCEVTGFIR--RDGGRVIGVETTRGF-IGAKKVGVAVAGHSSVVAAMA-GFRLPIESHPLQAL  261 (407)
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEE--cCCCcEEEEEeCCce-EECCEEEECCChhhHHHHHHc-CCCCCcCcccceEE
Confidence            99999999999999999999999986  522234567787885 999999999999998877655 88889999888866


Q ss_pred             EEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCC
Q 015072          236 YWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVD  315 (413)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~  315 (413)
                      ..+   ... .+     .+......+..+|++|..+  |.++++.....  .+........+..+.+.+.+.+++|.+.+
T Consensus       262 ~~~---~~~-~~-----~~~~~~~~~~~~y~~p~~~--g~~~ig~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~P~l~~  328 (407)
T TIGR01373       262 VSE---PLK-PI-----IDTVVMSNAVHFYVSQSDK--GELVIGGGIDG--YNSYAQRGNLPTLEHVLAAILEMFPILSR  328 (407)
T ss_pred             Eec---CCC-CC-----cCCeEEeCCCceEEEEcCC--ceEEEecCCCC--CCccCcCCCHHHHHHHHHHHHHhCCCcCC
Confidence            443   111 11     1222222334578888753  54444432110  01111111122678889999999999986


Q ss_pred             CCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccCCCC
Q 015072          316 SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENP  395 (413)
Q Consensus       316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~~  395 (413)
                      . .+...|+|.|++|+|+.|+||++| .  +|+|+++||+|+|+++||++|+++|++|+++++ ..+++.|+|.||..+.
T Consensus       329 ~-~~~~~w~G~~~~t~D~~PiIg~~~-~--~gl~~a~G~~g~G~~~ap~~G~~la~li~~~~~-~~~~~~f~~~Rf~~~~  403 (407)
T TIGR01373       329 V-RMLRSWGGIVDVTPDGSPIIGKTP-L--PNLYLNCGWGTGGFKATPASGTVFAHTLARGEP-HDINAPFTLDRFHSGR  403 (407)
T ss_pred             C-CeEEEeccccccCCCCCceeCCCC-C--CCeEEEeccCCcchhhchHHHHHHHHHHhCCCC-CCCCcccCHhHhccCC
Confidence            4 567899999999999999999998 3  899999999999999999999999999996665 5578999999997644


Q ss_pred             C
Q 015072          396 K  396 (413)
Q Consensus       396 ~  396 (413)
                      .
T Consensus       404 ~  404 (407)
T TIGR01373       404 L  404 (407)
T ss_pred             c
Confidence            3

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=100.00  E-value=1.3e-43  Score=335.36  Aligned_cols=358  Identities=18%  Similarity=0.204  Sum_probs=264.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc--------------------------
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED--------------------------   62 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~--------------------------   62 (413)
                      ||+|||||++|+++|++|+++|++|+|+|++...+ .++|..++|.++..+..+                          
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~-~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA-LETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPD   80 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchh-hhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCC
Confidence            79999999999999999999999999999975432 466777777766543211                          


Q ss_pred             --------------------------cccchHHHHHHHHHHHHHhcCCee-EeeeeeeeeCCCC--hHHHHHHHHHHHhC
Q 015072           63 --------------------------YYHPMVLESSLLWEQAQSEIGYKV-YFKAHQFDMGPSE--NKSLRSVIASCRKN  113 (413)
Q Consensus        63 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~  113 (413)
                                                .+.++...+.+.|.++.+..++++ +.+.+.+.+...+  .+.+.+..+.++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~  160 (416)
T PRK00711         81 GDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEA  160 (416)
T ss_pred             CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHHHHHHHHHHHHHHc
Confidence                                      122344566788888888888876 4455666665432  23455566777788


Q ss_pred             CCCccccCHHHHHHhcCCcccC--CCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE
Q 015072          114 SVPHQVLDCRQVLQKYSGRIEI--PENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT  191 (413)
Q Consensus       114 g~~~~~l~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~  191 (413)
                      |+++++++.+++.+.+|. +..  .....+++.+.++.++|..+++.|.+.+.+.|++|+++++|+++..  +++ ..+.
T Consensus       161 g~~~~~l~~~e~~~~~P~-l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~-~~~~  236 (416)
T PRK00711        161 GVPYELLDRDELAAVEPA-LAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLV--EGG-RITG  236 (416)
T ss_pred             CCCceecCHHHHHHhCCC-ccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cCC-EEEE
Confidence            999999999999999997 531  3456688999999999999999999999999999999999999988  622 2234


Q ss_pred             EEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCC
Q 015072          192 VVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLE  271 (413)
Q Consensus       192 v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  271 (413)
                      +++++++ +.||+||+|+|+|+..+++.+ +..+|+.|.+++++....++...        .|..........+..+..+
T Consensus       237 v~t~~~~-~~a~~VV~a~G~~~~~l~~~~-g~~~pi~p~rg~~~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~  306 (416)
T PRK00711        237 VQTGGGV-ITADAYVVALGSYSTALLKPL-GVDIPVYPLKGYSLTVPITDEDR--------APVSTVLDETYKIAITRFD  306 (416)
T ss_pred             EEeCCcE-EeCCEEEECCCcchHHHHHHh-CCCcccCCccceEEEEecCCCCC--------CCceeEEecccCEEEeecC
Confidence            6666664 999999999999999888877 78889999999877654332211        1221111111122333322


Q ss_pred             CCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEE
Q 015072          272 YPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVA  351 (413)
Q Consensus       272 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~  351 (413)
                       +.++.++.......+..    ...+..+.+.+.+.++||.+.+. .+...|+|+|++|+|+.|+||+++.   +|+|++
T Consensus       307 -~~~~iG~~~~~~~~~~~----~~~~~~~~l~~~~~~~~P~l~~~-~~~~~w~G~r~~t~D~~PiIG~~~~---~gl~~a  377 (416)
T PRK00711        307 -DRIRVGGMAEIVGFDLR----LDPARRETLEMVVRDLFPGGGDL-SQATFWTGLRPMTPDGTPIVGATRY---KNLWLN  377 (416)
T ss_pred             -CceEEEEEEEecCCCCC----CCHHHHHHHHHHHHHHCCCcccc-cccceeeccCCCCCCCCCEeCCcCC---CCEEEe
Confidence             23333332111111111    11126778888899999998864 5678899999999999999999873   899999


Q ss_pred             eCCCccccccchHHHHHHHHHHHcCCCCcccccccccccc
Q 015072          352 GGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF  391 (413)
Q Consensus       352 ~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~  391 (413)
                      +||+|+|+++||++|+++|++|.++.. +.+++.|+|+||
T Consensus       378 ~G~~g~G~~~ap~~g~~la~li~g~~~-~~~~~~f~~~Rf  416 (416)
T PRK00711        378 TGHGTLGWTMACGSGQLLADLISGRKP-AIDADDLSVARY  416 (416)
T ss_pred             cCCchhhhhhhhhHHHHHHHHHcCCCC-CCCccccCccCC
Confidence            999999999999999999999995554 678999999998

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=100.00  E-value=2.4e-40  Score=312.00  Aligned_cols=348  Identities=14%  Similarity=0.132  Sum_probs=252.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC--------------------------
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE--------------------------   61 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~--------------------------   61 (413)
                      +||+|||||++|+++|++|+++|++|+|+|+++..+ .++|..++|.+......                          
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~-~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA-METSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNP   80 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC-cCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecC
Confidence            589999999999999999999999999999987543 45666666766542211                          


Q ss_pred             ------------------------ccccchHHHHHHHHHHHHHhcCCee-EeeeeeeeeCCCC--hHHHHHHHHHHHhCC
Q 015072           62 ------------------------DYYHPMVLESSLLWEQAQSEIGYKV-YFKAHQFDMGPSE--NKSLRSVIASCRKNS  114 (413)
Q Consensus        62 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g  114 (413)
                                              ....++..++.+.|.++.+..++++ +.+.+.+.+....  .+.+++..+.++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g  160 (410)
T PRK12409         81 KPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEGG  160 (410)
T ss_pred             CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHHhccHHHHHHHhcC
Confidence                                    0113455667788888888888876 4456777664322  233455666677788


Q ss_pred             CCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe
Q 015072          115 VPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT  194 (413)
Q Consensus       115 ~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~  194 (413)
                      ++.+.++++++.+++|. +. .....+++.+.++.+++..++..|.+.+++.|++++++++|+++..  +  ++.+.+.+
T Consensus       161 ~~~~~l~~~e~~~~~P~-l~-~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~--~--~~~~~v~~  234 (410)
T PRK12409        161 LERRAVTPEEMRAIEPT-LT-GEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKT--D--GGGVVLTV  234 (410)
T ss_pred             CCeEEcCHHHHHHhCCC-Cc-cccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--e--CCEEEEEE
Confidence            88899999999999998 54 3456788899999999999999999999999999999999999988  6  34455543


Q ss_pred             CCc-----cEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCCCCceEE-ecCCCeeEecC
Q 015072          195 SSG-----EEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFA-SYGDPHVYGTP  268 (413)
Q Consensus       195 ~~g-----~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p  268 (413)
                      .++     .+++||+||+|+|+|+..+.+.+ +..+|+.|.+++++.+++.+....     ...|.+. ...+.+++..+
T Consensus       235 ~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~-~~~~~i~p~~g~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~  308 (410)
T PRK12409        235 QPSAEHPSRTLEFDGVVVCAGVGSRALAAML-GDRVNVYPVKGYSITVNLDDEASR-----AAAPWVSLLDDSAKIVTSR  308 (410)
T ss_pred             EcCCCCccceEecCEEEECCCcChHHHHHHh-CCCCccccCCceEEEeecCCcccc-----ccCCceeeeecCCcEEEEe
Confidence            322     25999999999999999888876 778899999999877664332111     1133222 11222222212


Q ss_pred             CCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCE
Q 015072          269 SLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDV  348 (413)
Q Consensus       269 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~  348 (413)
                      . ..+.++.+++......++.    ...+.++.+.+.+.++||.+.+.  .+..|+|+|++|+|++|+||+.+ .  +|+
T Consensus       309 ~-~~~~~~igg~~~~~~~~~~----~~~~~~~~l~~~~~~~~P~l~~~--~~~~w~G~r~~t~D~~PiiG~~~-~--~~l  378 (410)
T PRK12409        309 L-GADRFRVAGTAEFNGYNRD----IRADRIRPLVDWVRRNFPDVSTR--RVVPWAGLRPMMPNMMPRVGRGR-R--PGV  378 (410)
T ss_pred             c-CCCcEEEEEEEEecCCCCC----CCHHHHHHHHHHHHHhCCCCCcc--ccceecccCCCCCCCCCeeCCCC-C--CCE
Confidence            1 1223334433211111111    11126788889999999999864  34479999999999999999876 3  899


Q ss_pred             EEEeCCCccccccchHHHHHHHHHHHcCCC
Q 015072          349 VVAGGFSGHGFKMAPVVGRILADLVLSGEA  378 (413)
Q Consensus       349 ~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~  378 (413)
                      |+++|++++|+++||++|+++|++|+++.+
T Consensus       379 ~~~~G~~~~G~~~ap~~g~~lA~~i~~~~~  408 (410)
T PRK12409        379 FYNTGHGHLGWTLSAATADLVAQVVAQKLP  408 (410)
T ss_pred             EEecCCcccchhhcccHHHHHHHHHcCCCC
Confidence            999999999999999999999999985554

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=100.00  E-value=5.1e-41  Score=312.20  Aligned_cols=345  Identities=30%  Similarity=0.461  Sum_probs=266.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecc---cCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT---YPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      ||+|||||++|+++|++|+++|++|+|||++..+  .++|..+.+.++..   .......++...+.+.|+++.+..+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~--~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   78 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIG--SGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIP   78 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTT--SSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeecccc--ccccccccccccccccccccccccchhhhhccchhhhhhhcCcc
Confidence            7999999999999999999999999999999554  36677777888776   455567788999999999999988877


Q ss_pred             eE-eeeeeeeeCCC--ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072           86 VY-FKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        86 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      .. .+.+.+.+...  +.+.++...+.++..+.+.+.++.+++.+.+|. +. +....+++.+.++++++.++++.|.+.
T Consensus        79 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~-~~~~~~~~~~~~g~i~~~~l~~~l~~~  156 (358)
T PF01266_consen   79 VGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPF-LN-PRIEGGVFFPEGGVIDPRRLIQALAAE  156 (358)
T ss_dssp             CEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT-SS-TTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcc-cc-cchhhhhcccccccccccchhhhhHHH
Confidence            64 46677766533  233456777888888999999999999999998 65 667889999999999999999999999


Q ss_pred             HHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecC
Q 015072          163 AIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKE  241 (413)
Q Consensus       163 ~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~  241 (413)
                      +++.|++++.+++|++|..  +  ++.+. |.+++|+ ++||+||+|+|+|+..+++.+ +..+|+.+.+++++.++...
T Consensus       157 ~~~~Gv~i~~~~~V~~i~~--~--~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~  230 (358)
T PF01266_consen  157 AQRAGVEIRTGTEVTSIDV--D--GGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLL-GLDLPLRPVRGQVLVLEPPE  230 (358)
T ss_dssp             HHHTT-EEEESEEEEEEEE--E--TTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTT-TTSSTEEEEEEEEEEEEGCC
T ss_pred             HHHhhhhccccccccchhh--c--ccccccccccccc-cccceeEecccccceeeeecc-cccccccccceEEEEEccCC
Confidence            9999999999999999999  7  45666 9999998 999999999999999988877 77779999999999888433


Q ss_pred             CCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCC------CCCcchHHHHHHHHhhcCCCCC
Q 015072          242 GDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPW------GPGPLLDSLKELIQGRFAGRVD  315 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~p~~~~  315 (413)
                      ........   ...........+|+.|..  ++++.+.........+.....      ...+ ++.+.+.+.+++|.+.+
T Consensus       231 ~~~~~~~~---~~~~~~~~~~~~~~~p~~--g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p~l~~  304 (358)
T PF01266_consen  231 SPLAPAIL---FPPVIFGPSDGVYIRPRP--GGVLIGTADGNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLLPGLGD  304 (358)
T ss_dssp             SGSSSEEE---EEEECESSCTEEEEEEET--TEEEEEESECEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHSGGGGG
T ss_pred             cccccccc---cccccccccccceecccc--cccccccccccccccccccccccccccccHH-HHHhHHHHHHHHHHhhh
Confidence            22100000   011112223457777775  233333222111111111100      0001 46899999999999986


Q ss_pred             CCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072          316 SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADL  372 (413)
Q Consensus       316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~  372 (413)
                      . .+...|+|+|++|+|+.|+||++|..  +|+|+++|++|+|+++||++|+++|++
T Consensus       305 ~-~v~~~~~g~r~~t~d~~p~ig~~~~~--~~l~~~~g~~~~G~~~a~~~a~~~a~~  358 (358)
T PF01266_consen  305 A-EVVRSWAGIRPFTPDGRPIIGELPGS--PNLYLAGGHGGHGFTLAPGLAELLADL  358 (358)
T ss_dssp             S-EEEEEEEEEEEEETTSECEEEEESSE--EEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred             c-cccccccceeeeccCCCeeeeecCCC--CCEEEEECCCchHHHHHHHHHHHHhcC
Confidence            4 55678999999999999999999988  999999999999999999999999985

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=100.00  E-value=3.9e-40  Score=326.19  Aligned_cols=360  Identities=18%  Similarity=0.177  Sum_probs=257.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc--ccchHH----HHHHHHHHHHH
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPMVL----ESSLLWEQAQS   80 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~   80 (413)
                      .+||+|||||++|+++|++|+++|++|+|+|++...+ .++|+.+.|.+.+.+....  ..++..    .+.+.|.++. 
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~-~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~-  337 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA-QGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALP-  337 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc-ccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence            3699999999999999999999999999999985443 3567777777766543221  223332    4667788776 


Q ss_pred             hcCCee-EeeeeeeeeCCCChHHHHHHHHHHHhC--CCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072           81 EIGYKV-YFKAHQFDMGPSENKSLRSVIASCRKN--SVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      +.+.++ +...+.+.+...+ +..+...+.....  +...+.++.+++.+.++.    .....+++.+.+++++|..+++
T Consensus       338 ~~~~~~~~~~~G~l~~a~~~-~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~----~~~~~g~~~p~~G~v~p~~l~~  412 (662)
T PRK01747        338 AAGVAFDHDWCGVLQLAWDE-KSAEKIAKMLALGLPAELARALDAEEAEELAGL----PVPCGGIFYPQGGWLCPAELCR  412 (662)
T ss_pred             hcCCCCCCCCCceEEeecCc-hHHHHHHHHHhccCchHhhhhCCHHHHHHHhCC----CCCCCcEEeCCCCeeCHHHHHH
Confidence            445554 3345666554332 2222222222221  233578888888887764    3456789999999999999999


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEE
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYW  237 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~  237 (413)
                      .|.+.+.+ |++++++++|+++..  .  ++.+.|.+++|..+++|.||+|+|+|+..+...   ..+|+.++||+++.+
T Consensus       413 aL~~~a~~-Gv~i~~~~~V~~i~~--~--~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~---~~lpl~p~RGqv~~~  484 (662)
T PRK01747        413 ALLALAGQ-QLTIHFGHEVARLER--E--DDGWQLDFAGGTLASAPVVVLANGHDAARFAQT---AHLPLYSVRGQVSHL  484 (662)
T ss_pred             HHHHhccc-CcEEEeCCEeeEEEE--e--CCEEEEEECCCcEEECCEEEECCCCCccccccc---cCCCcccccceEEee
Confidence            99999988 999999999999988  6  456778888887678999999999999877653   257999999999877


Q ss_pred             EecCCCccccccCCCCceEEecCCCeeEecC-CCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCC---
Q 015072          238 RIKEGDEADYAVGGDFPSFASYGDPHVYGTP-SLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGR---  313 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~---  313 (413)
                      +......  .     .+.....   ..|++| ..  +|.+.+|.+...  +....+. ..+..+.+.+.+.+++|.+   
T Consensus       485 ~~~~~~~--~-----~~~~~~~---~~Y~~p~~~--~g~~~iGat~~~--~~~~~~~-~~~~~~~~~~~l~~~~P~l~~~  549 (662)
T PRK01747        485 PTTPALS--A-----LKQVLCY---DGYLTPQPA--NGTHCIGASYDR--DDTDTAF-READHQENLERLAECLPQALWA  549 (662)
T ss_pred             cCCcccc--c-----cCceeEC---CceeCCCCC--CCceEeCcccCC--CCCCCCC-CHHHHHHHHHHHHHhCCCchhh
Confidence            6332111  0     1111121   258888 43  355554442211  1111111 1125667778899999976   


Q ss_pred             --CCCCCCceeeeeeeeccCCCCeEEec----------------------CCCCCCCCEEEEeCCCccccccchHHHHHH
Q 015072          314 --VDSSGPAATQLCMYSMTPDKDFVIDF----------------------LGGELGEDVVVAGGFSGHGFKMAPVVGRIL  369 (413)
Q Consensus       314 --~~~~~~~~~~~g~~~~t~d~~p~ig~----------------------~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~  369 (413)
                        .+ ..+...|+|+|++|+|++|+||+                      +|..  +|+|+++||||+|+++||++|+++
T Consensus       550 ~~~~-~~~~~~~aG~R~~tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~--~gl~v~~G~gs~Gl~~ap~~a~~l  626 (662)
T PRK01747        550 KEVD-VSALQGRVGFRCASRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRL--PGLYVAGALGSRGLCSAPLGAELL  626 (662)
T ss_pred             hccC-ccccCceEEEeccCCCcccccCCCCCHHHHHHHHHhhhhccccccCCCC--CCeEEEecccccHHHHHHHHHHHH
Confidence              33 24678899999999999999999                      4555  899999999999999999999999


Q ss_pred             HHHHHcCCCCccc---cccccccccCCCCCCCcc
Q 015072          370 ADLVLSGEAQGVE---LRHFRIARFKENPKGNVK  400 (413)
Q Consensus       370 a~~i~~~~~~~~~---~~~~~~~R~~~~~~~~~~  400 (413)
                      |++|+ |++.+.+   ++.|+|.||..+++.+.+
T Consensus       627 A~li~-g~~~p~~~~~~~~~~p~Rf~~r~l~~~~  659 (662)
T PRK01747        627 ASQIE-GEPLPLERDLLAALHPNRFWVRKLLKGK  659 (662)
T ss_pred             HHHHh-CCCCCCCHHHHHhhChHHHHHHHHhcCC
Confidence            99998 5553433   688999999888776644

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=100.00  E-value=3.1e-39  Score=307.26  Aligned_cols=349  Identities=17%  Similarity=0.160  Sum_probs=243.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecc----------cCCccccchHHHH--
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRAT----------YPEDYYHPMVLES--   71 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~----------~~~~~~~~~~~~~--   71 (413)
                      .++||+|||||++|+++|++|+++  |.+|+|+|++..+  .++|..+.|.+...          +......++...+  
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g--~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  100 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG--AGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQ  100 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc--cccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHH
Confidence            458999999999999999999998  8999999998764  46666666654321          1111222333333  


Q ss_pred             -HHHHHHHHHhcCCeeE-eeeeeeeeCCC--ChHHHHHHHHHHHhCCCC-ccccCHHHHHHhcCCcccCCCCeEEEEecC
Q 015072           72 -SLLWEQAQSEIGYKVY-FKAHQFDMGPS--ENKSLRSVIASCRKNSVP-HQVLDCRQVLQKYSGRIEIPENWVGVTTEL  146 (413)
Q Consensus        72 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  146 (413)
                       .+.+.++.++.++++. ...+.+.+...  +...++...+.+++.|++ +++++.+++.++++.    .....+++.+.
T Consensus       101 ~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~----~~~~~g~~~~~  176 (460)
T TIGR03329       101 AVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGS----ARHLEGFYSPV  176 (460)
T ss_pred             HHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCC----CcceEEEEeCC
Confidence             3334455566777763 44666665433  233455666677778876 589999999998886    34567899999


Q ss_pred             CeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELP  226 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p  226 (413)
                      ++.+||.++++.|.+.+++.|++|+++++|++|..  .   +.+.|++++|+ +.||+||+|+|+|+..+++.+ +  .+
T Consensus       177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~---~~~~v~t~~g~-v~A~~VV~Atga~s~~l~~~~-~--~~  247 (460)
T TIGR03329       177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--G---QPAVVRTPDGQ-VTADKVVLALNAWMASHFPQF-E--RS  247 (460)
T ss_pred             CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--C---CceEEEeCCcE-EECCEEEEcccccccccChhh-c--Ce
Confidence            99999999999999999999999999999999977  4   44678888786 999999999999998887755 3  35


Q ss_pred             eeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCC-C----CcCCCCCCCCCCCcchHH
Q 015072          227 IQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHR-G----YLCDPDRRPWGPGPLLDS  301 (413)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~-~----~~~~~~~~~~~~~~~~~~  301 (413)
                      +.+.+++++..+............... .+........|+++..+  |.++++... .    ...++...  ......+.
T Consensus       248 ~~p~~~~~~~t~pl~~~~~~~~~~~~~-~~~d~~~~~~y~r~~~d--grll~G~~~~~~~~~~~~~~~~~--~~~~~~~~  322 (460)
T TIGR03329       248 IAIVSSDMVITEPAPDLLAATGLDHGT-SVLDSRIFVHYYRSTPD--GRLMLGKGGNTFAYGGRMLPVFN--QPSPYEAL  322 (460)
T ss_pred             EEEeccceEecCCCcHHHHhhcCCCCc-eEecchhhhhheeECCC--CcEEEcCCccccccCcccccccC--CchHHHHH
Confidence            566666665443111100000000001 11111111246666543  434443211 1    01111111  11114678


Q ss_pred             HHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCC
Q 015072          302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGE  377 (413)
Q Consensus       302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~  377 (413)
                      |.+.+.++||.+.+. .+...|+|++++|+|++|+||+++..  +|+|+++||+|+|+++|+++|+++|++|+++.
T Consensus       323 l~~~~~~~fP~L~~~-~i~~~W~G~~~~t~D~~P~iG~~~~~--~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g~~  395 (460)
T TIGR03329       323 LTRSLRKFFPALAEV-PIAASWNGPSDRSVTGLPFFGRLNGQ--PNVFYGFGYSGNGVAPSRMGGQILSSLVLGLD  395 (460)
T ss_pred             HHHHHHHhCCCcCCC-eeeEEEeceeCCCCCCCceeeeecCC--CCEEEEeCcCCCChhHHHHHHHHHHHHhcCCC
Confidence            889999999999874 56788999999999999999999876  99999999999999999999999999998443

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-38  Score=297.99  Aligned_cols=366  Identities=27%  Similarity=0.383  Sum_probs=269.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc----cccchHHHHHHHHHHHHH
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED----YYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   80 (413)
                      .+++||+|||||++|+++|++|+++|.+|+|+|+...++  +++..+.+.+...+...    ....+...+..+|+.+..
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG--GAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSE   79 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC--cchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHH
Confidence            356899999999999999999999999999999988765  45555555555444432    356677788889999888


Q ss_pred             hcCCee-EeeeeeeeeCCCCh----HHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHH
Q 015072           81 EIGYKV-YFKAHQFDMGPSEN----KSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKA  155 (413)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  155 (413)
                      ...... +...+.+.+.....    .......+..+......+.++..+..+..|. +.......+++.+.+++++|..+
T Consensus        80 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-l~~~~~~~a~~~~~~~~~~p~~~  158 (387)
T COG0665          80 ELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPA-LGPDFVCGGLFDPTGGHLDPRLL  158 (387)
T ss_pred             HhCcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCC-CCcccceeeEecCCCCcCCHHHH
Confidence            776552 34444444433322    2334444455555444467888889899998 66555677899999999999999


Q ss_pred             HHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcC-CCcceeEEEEE
Q 015072          156 VSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISG-LELPIQAVETS  233 (413)
Q Consensus       156 ~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g-~~~p~~~~~~~  233 (413)
                      ++.+.+.+.+.| ..+..++.|..+..  . + ..+.|.+.+|+ +.|++||+|+|+|+..+.... + ..+|+.|.+++
T Consensus       159 ~~~l~~~~~~~G~~~~~~~~~~~~~~~--~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~-~~~~~~~~p~~~~  232 (387)
T COG0665         159 TRALAAAAEELGVVIIEGGTPVTSLER--D-G-RVVGVETDGGT-IEADKVVLAAGAWAGELAATL-GELPLPLRPVRGQ  232 (387)
T ss_pred             HHHHHHHHHhcCCeEEEccceEEEEEe--c-C-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhc-CCCcCccccccce
Confidence            999999999999 56666889999888  5 2 67889999998 999999999999999998877 6 67899999999


Q ss_pred             EEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCc--CCCCCCCCCCCc-chHHHHHHHHhhc
Q 015072          234 VCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYL--CDPDRRPWGPGP-LLDSLKELIQGRF  310 (413)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~~~~~~  310 (413)
                      ++..+..+.....    ...+..........|++|..+  +.+.++......  .+.+..   ..+ ....+.+.+.+++
T Consensus       233 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~y~~~~~~--g~~~~g~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~  303 (387)
T COG0665         233 ALTTEPPEGLLAD----GLAPVVLVVDDGGGYIRPRGD--GRLRVGGTDEEGGDDPSDPE---REDLVIAELLRVARALL  303 (387)
T ss_pred             EEEecCCCccccc----cccceEEEecCCceEEEEcCC--CcEEEeecccccCCCCcccc---CcchhHHHHHHHHHHhC
Confidence            9988744422110    001112233334578888733  545444422111  111111   111 3568999999999


Q ss_pred             CCCCCCCCCceeeeeeeecc-CCCCeEEec-CCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccc
Q 015072          311 AGRVDSSGPAATQLCMYSMT-PDKDFVIDF-LGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRI  388 (413)
Q Consensus       311 p~~~~~~~~~~~~~g~~~~t-~d~~p~ig~-~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~  388 (413)
                      |.+.+. .....|+|+|++| ||++|+||+ .+ .  +|+|+++||+++|++++|++|+++|++|+++.. ..+...+.+
T Consensus       304 P~l~~~-~~~~~w~g~~~~t~pd~~P~iG~~~~-~--~~l~~a~G~~~~G~~~~p~~g~~lA~li~g~~~-~~~~~~~~~  378 (387)
T COG0665         304 PGLADA-GIEAAWAGLRPPTTPDGLPVIGRAAP-L--PNLYVATGHGGHGFTLAPALGRLLADLILGGEP-ELDLRPLLL  378 (387)
T ss_pred             cccccc-ccceeeeccccCCCCCCCceeCCCCC-C--CCEEEEecCCCcChhhccHHHHHHHHHHcCCCC-CCCcccccc
Confidence            999974 5667899999988 999999995 77 7  999999999999999999999999999994444 566777777


Q ss_pred             cccCC
Q 015072          389 ARFKE  393 (413)
Q Consensus       389 ~R~~~  393 (413)
                      .||..
T Consensus       379 ~~f~~  383 (387)
T COG0665         379 DRFAP  383 (387)
T ss_pred             ccccc
Confidence            77543

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=100.00  E-value=2.4e-38  Score=268.01  Aligned_cols=370  Identities=21%  Similarity=0.240  Sum_probs=280.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEI   82 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~----g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (413)
                      +.||+|||||..|+++|+.|.++    |++|+|||+++.- ..+++.-+.|.+...+.-+...++...+.+++....+.+
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty-tqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl  164 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY-TQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHL  164 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc-cccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhh
Confidence            58999999999999999999875    7999999998754 356666667788888888888888888888888887777


Q ss_pred             CC------ee-EeeeeeeeeCCC-ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEE-EEecCCeeecHH
Q 015072           83 GY------KV-YFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVG-VTTELGGVIKPT  153 (413)
Q Consensus        83 ~~------~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~  153 (413)
                      ++      +. +.+.|++.+..+ +.+.++...+...+.|...++++++++.++||. ++.....-+ +-...+|++||.
T Consensus       165 ~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPw-lntegVaLa~lG~e~EGwfdpw  243 (509)
T KOG2853|consen  165 GILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPW-LNTEGVALASLGVEKEGWFDPW  243 (509)
T ss_pred             ccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCc-ccccceeeeecccccccccCHH
Confidence            64      32 668888877653 344556666667778999999999999999998 765544433 334678999999


Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCC-------------------cEEEEeCCc--cEEEeCeEEEcCCcC
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRG-------------------GVTVVTSSG--EEFWGKKCVVTAGAW  212 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~-------------------~~~v~~~~g--~~i~ad~vV~A~G~~  212 (413)
                      .++..+++.+...|+.+. +.+|+.++.  +. +.                   ++.|+..|+  +.+++..+|+|+|+|
T Consensus       244 ~LLs~~rrk~~~lGv~f~-~GeV~~Fef--~s-qr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~  319 (509)
T KOG2853|consen  244 ALLSGIRRKAITLGVQFV-KGEVVGFEF--ES-QRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW  319 (509)
T ss_pred             HHHHHHHHHhhhhcceEe-cceEEEEEE--ec-ccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence            999999999999999987 678888877  41 12                   223333333  268999999999999


Q ss_pred             hhhhhhhhcCC---------CcceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCC
Q 015072          213 VGKLVKKISGL---------ELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRG  283 (413)
Q Consensus       213 ~~~l~~~~~g~---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~  283 (413)
                      +.++++.. |+         .+|+.|.|.++..+..+....      ..+|...+..  .+|++-..-..+++.+.+ ..
T Consensus       320 s~QvArlA-gIG~g~g~L~vplPiepRKRyvyvi~~~~~PG------l~~Pl~iDps--G~f~Rrdglg~nfl~grs-p~  389 (509)
T KOG2853|consen  320 SGQVARLA-GIGKGPGLLAVPLPIEPRKRYVYVIFAPDVPG------LDTPLTIDPS--GVFFRRDGLGGNFLCGRS-PS  389 (509)
T ss_pred             HHHHHHHh-ccCCCCceeeecccCCccceeEEEEeCCCCCC------CCCceeECCC--ccEEEecCCCCceecccC-Cc
Confidence            99887654 43         478999999888777553221      2255444433  467764432223343333 11


Q ss_pred             CcC--CCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeec-cCCCCeEEecCCCCCCCCEEEEeCCCccccc
Q 015072          284 YLC--DPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSM-TPDKDFVIDFLGGELGEDVVVAGGFSGHGFK  360 (413)
Q Consensus       284 ~~~--~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~-t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~  360 (413)
                      .+.  ++..-+.+++.+.+.++..+....|.+... ++...|+|++-. |-|..++||++|..  .|+|+++|++|||+.
T Consensus       390 ed~~~d~~nldVD~d~F~qkiwP~L~nRVP~feta-kVqsaWaGyyD~NtfD~ngViG~HP~y--~Nly~atGFsghGvq  466 (509)
T KOG2853|consen  390 EDEEPDHSNLDVDHDYFYQKIWPHLANRVPAFETA-KVQSAWAGYYDHNTFDDNGVIGEHPLY--TNLYMATGFSGHGVQ  466 (509)
T ss_pred             cccCCCccccccChHHHHhhhhHHHHhccccccee-eeeehhcccccccccccCCcccCCcce--eeeeeeecccccchh
Confidence            111  222223333337788889999999999974 677899999876 78999999999998  999999999999999


Q ss_pred             cchHHHHHHHHHHHcCCCCccccccccccccCCCC
Q 015072          361 MAPVVGRILADLVLSGEAQGVELRHFRIARFKENP  395 (413)
Q Consensus       361 ~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~~  395 (413)
                      .+|++|+.+|++|++|....++++.|+.+|+.+..
T Consensus       467 qs~avgRAiaElIldG~f~tidLsrf~f~Rlv~~q  501 (509)
T KOG2853|consen  467 QSPAVGRAIAELILDGAFITIDLSRFDFRRLVKMQ  501 (509)
T ss_pred             cchHHHHHHHHHHhcCceeEEeccccchhHHhccC
Confidence            99999999999999999989999999999987754

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-37  Score=281.91  Aligned_cols=371  Identities=19%  Similarity=0.284  Sum_probs=286.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc-cccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ...|++|||||..|+++||+|+++|.+..+++..... .+++++...|.+.....+. ....+...+...+.+++++.++
T Consensus        38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~l-tsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl  116 (856)
T KOG2844|consen   38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRL-TSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGL  116 (856)
T ss_pred             CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeee-ccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence            3589999999999999999999999995555443332 2466666666655533333 3344555667788899999988


Q ss_pred             ee-EeeeeeeeeCCC--ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHH
Q 015072           85 KV-YFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        85 ~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      .. +.+.|.+++...  ..+.++.+......+|.+.+.+++++..+++|. ++.++...++|.|.++++||..++++|..
T Consensus       117 ~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pL-Ln~d~v~g~Ly~P~DG~~DP~~lC~ala~  195 (856)
T KOG2844|consen  117 HTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPL-LNVDDVYGGLYSPGDGVMDPAGLCQALAR  195 (856)
T ss_pred             CcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcc-cchhHheeeeecCCCcccCHHHHHHHHHH
Confidence            76 788888887543  233445555555667889999999999999999 99999999999999999999999999999


Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecC
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKE  241 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~  241 (413)
                      .+++.|+.|.+++.|++|..  .. ++.+.|+|.-|. +++.+||+|||.|+..+-. +++..+|+.|..+++++.+..+
T Consensus       196 ~A~~~GA~viE~cpV~~i~~--~~-~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~-m~gvkvPL~p~~H~YvvT~~Ie  270 (856)
T KOG2844|consen  196 AASALGALVIENCPVTGLHV--ET-DKFGGVETPHGS-IETECVVNAAGVWAREVGA-MAGVKVPLVPMHHAYVVTSRIE  270 (856)
T ss_pred             HHHhcCcEEEecCCcceEEe--ec-CCccceeccCcc-eecceEEechhHHHHHhhh-hcCCcccceeeeeeEEEecccC
Confidence            99999999999999999998  42 255689999898 9999999999999977654 4589999999999988766444


Q ss_pred             CCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCc----CCC------CCCCCCCCcchHHHHHHHHhhcC
Q 015072          242 GDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYL----CDP------DRRPWGPGPLLDSLKELIQGRFA  311 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~----~~~------~~~~~~~~~~~~~l~~~~~~~~p  311 (413)
                      ... .+     .+......+..+|++-..+  +.+.++...+..    ..+      .+.+|   +.+....+.+.++.|
T Consensus       271 Gi~-s~-----t~p~irD~DgSvylR~~~~--gil~GGyE~n~i~~egv~~~~~~~lqE~DW---d~F~~hlesai~r~P  339 (856)
T KOG2844|consen  271 GVS-SL-----TRPNIRDLDGSVYLRQQGD--GILFGGYESNPIFTEGVPPGFATGLQEPDW---DHFEPHLEAAIERVP  339 (856)
T ss_pred             Ccc-CC-----CccceecccceEEEEecCC--ceeccccccCceeccccCCccccccccccH---hhhHHHHHHHHHhCc
Confidence            321 11     1124455666788876543  655554422110    111      11122   145566677888999


Q ss_pred             CCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCcccccccccccc
Q 015072          312 GRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF  391 (413)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~  391 (413)
                      .+.+. .+...-+|.-.+|||.+|++|+.|..  .|+|+++|+++.|++++-++|+.+++.|+.|++ +.|+..|++.||
T Consensus       340 ~l~k~-~i~~~v~gpe~ftPD~~p~mGe~p~~--~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g~p-~~d~~~~D~~Rf  415 (856)
T KOG2844|consen  340 VLEKA-GIKSLVNGPETFTPDHLPIMGESPEV--RGYWVACGFNSAGLSFGGGCGKYLAEWIIHGQP-PLDVHELDLRRF  415 (856)
T ss_pred             hhhhc-CccceecCccccCCccccccCCCccc--cceEEeecCCccceeccCchhHHHHHHhhcCCC-CccchhccHHHh
Confidence            99974 56667789999999999999999999  999999999999999999999999999999988 789999999999


Q ss_pred             CCCCCCC
Q 015072          392 KENPKGN  398 (413)
Q Consensus       392 ~~~~~~~  398 (413)
                      .+.....
T Consensus       416 ~~~~~~~  422 (856)
T KOG2844|consen  416 GKLQTNR  422 (856)
T ss_pred             hhhhccc
Confidence            8754433

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=100.00  E-value=1.4e-36  Score=282.33  Aligned_cols=335  Identities=18%  Similarity=0.213  Sum_probs=239.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC-ccccchHHHHHHHHHHHHHhcCCee
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      +||+|||||++|+++|++|+++|++|+|+|+....  .++|..+.|.+...... ....++...+.+.|+++.++.++. 
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~--~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-   77 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA--QGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIW-   77 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC--CCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCC-
Confidence            58999999999999999999999999999998764  46666777766543222 334567888999999998887765 


Q ss_pred             EeeeeeeeeCCCC--hHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           87 YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      +.+.+.+.+...+  .+.+....+.....+.+.++++++++.+.+|. +..+....+++.+.++++||..++..|.+.+.
T Consensus        78 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~  156 (365)
T TIGR03364        78 VRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPA-LRLDGLRGGLHSPDELRVEPREAIPALAAYLA  156 (365)
T ss_pred             EEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCC-CCccCceEEEEcCCCeeECHHHHHHHHHHHHH
Confidence            3556666664332  22234444444556777899999999999997 55456677889999999999999999999887


Q ss_pred             Hc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCC
Q 015072          165 KN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGD  243 (413)
Q Consensus       165 ~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~  243 (413)
                      +. |++++.+++|++|+.  .      .|++++|+ ++||+||+|+|+|+..+++.+ +..+|+.|.+++++.++.....
T Consensus       157 ~~~Gv~i~~~t~V~~i~~--~------~v~t~~g~-i~a~~VV~A~G~~s~~l~~~~-~~~~~~~p~~~q~~~~~p~~~~  226 (365)
T TIGR03364       157 EQHGVEFHWNTAVTSVET--G------TVRTSRGD-VHADQVFVCPGADFETLFPEL-FAASGVRRCKLQMMRTAPQPRL  226 (365)
T ss_pred             hcCCCEEEeCCeEEEEec--C------eEEeCCCc-EEeCEEEECCCCChhhhCcch-hhccCcceEEEEeeeccCCCCC
Confidence            75 999999999999966  2      46777776 889999999999999887766 5678999999999877633211


Q ss_pred             --ccccccC-----------------------CCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcc
Q 015072          244 --EADYAVG-----------------------GDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPL  298 (413)
Q Consensus       244 --~~~~~~~-----------------------~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  298 (413)
                        ...+...                       ...|.... ....+|++|..+  |.+.++.........+.  ......
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~--g~~~iG~~~~~~~~~~~--~~~~~~  301 (365)
T TIGR03364       227 PLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLE-WGIHLMVSQNPD--GELIIGDSHEYGLAPDP--FDDEEI  301 (365)
T ss_pred             cCCccccccceeeechhHhhCcchHHHHhhhcccCchhhh-cCeEEEEEECCC--CCEEecCcccccCCCCC--cchHHH
Confidence              0010000                       00011111 122468888754  54444432222111111  111124


Q ss_pred             hHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHH
Q 015072          299 LDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGR  367 (413)
Q Consensus       299 ~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~  367 (413)
                      .+.+.+.+.+++ .+.+. .+...|+|+|++|+|..|+++..  .  +|+|+++||+|+|+++||++|+
T Consensus       302 ~~~l~~~~~~~~-~l~~~-~~~~~w~G~r~~t~d~~~v~~~~--~--~g~~~a~G~~g~G~~~ap~~~~  364 (365)
T TIGR03364       302 DNLILAEAKTIL-GLPDL-DIVERWQGVYASSPPAPIFLERP--D--DGVTVVVVTSGAGMTLSFGLAE  364 (365)
T ss_pred             HHHHHHHHHHhc-CCCCC-ceEEEEeEEecCCCCCCceecCC--C--CCeEEEEecCCCcccccccccC
Confidence            566777777776 57653 56789999999999988888744  3  8999999999999999999886

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=100.00  E-value=2.1e-36  Score=282.07  Aligned_cols=337  Identities=21%  Similarity=0.241  Sum_probs=243.5

Q ss_pred             HHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC--ccccchH----HHHHHHHHHHHHhcCCee-Eeeeeeee
Q 015072           22 AAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE--DYYHPMV----LESSLLWEQAQSEIGYKV-YFKAHQFD   94 (413)
Q Consensus        22 ~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~   94 (413)
                      +|++|+++|++|+|||+....+ .++|+.+.|.+...+..  ....++.    ..+.++|+++.+. +.++ +...+.+.
T Consensus         1 ~A~~La~~G~~V~vlE~~~~~~-~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~-~~~~~~~~~G~L~   78 (381)
T TIGR03197         1 TAYSLARRGWQVTLYEQDEAPA-QGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEA-GFPFDHEWCGVLQ   78 (381)
T ss_pred             ChHHHHhCCCeeEEEeCCCccc-ccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCcccccCceEE
Confidence            5999999999999999965332 36677777777664432  1223343    2456778877553 5554 34567776


Q ss_pred             eCCCChHHHHHHHHHHHhCCCCc---cccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEe
Q 015072           95 MGPSENKSLRSVIASCRKNSVPH---QVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLR  171 (413)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~g~~~---~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~  171 (413)
                      +... .+.+..+.+..+..+.+.   ++++.+++...++.    .....+++.+.++++||..++..|.+.+.+ |++++
T Consensus        79 ~a~~-~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~----~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~  152 (381)
T TIGR03197        79 LAYD-EKEAERLQKLLEQLGFPEELARWVDAEQASQLAGI----PLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLH  152 (381)
T ss_pred             ecCC-hHHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCC----CCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEE
Confidence            6543 233444444444455543   47888888887654    345678899999999999999999999988 99999


Q ss_pred             cCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCC
Q 015072          172 DNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGG  251 (413)
Q Consensus       172 ~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  251 (413)
                      ++++|++|+.  +  ++.+.+++.+|+.++||+||+|+|+|+..+.+.   ..+|+.|.+++++.+..++...       
T Consensus       153 ~~~~V~~i~~--~--~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~---~~~pi~p~rg~~~~~~~~~~~~-------  218 (381)
T TIGR03197       153 FNTEITSLER--D--GEGWQLLDANGEVIAASVVVLANGAQAGQLAQT---AHLPLRPVRGQVSHLPATEALS-------  218 (381)
T ss_pred             eCCEEEEEEE--c--CCeEEEEeCCCCEEEcCEEEEcCCccccccccc---ccCCccccccceeeccCCCccc-------
Confidence            9999999988  6  456888888887789999999999999887664   3679999999998876432110       


Q ss_pred             CCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCC-----CCCCCceeeeee
Q 015072          252 DFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRV-----DSSGPAATQLCM  326 (413)
Q Consensus       252 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~-----~~~~~~~~~~g~  326 (413)
                      .++.....   ..|++|..+  |.+.++.+..... .+ .. ...+..+.+.+.+.+++|.+.     +. .+...|+|+
T Consensus       219 ~~~~~~~~---~~y~~p~~~--g~~~iG~t~~~~~-~~-~~-~~~~~~~~~~~~~~~~~P~l~~~~~~~~-~~~~~~~G~  289 (381)
T TIGR03197       219 ALKTVLCY---DGYLTPANN--GEHCIGASYDRND-DD-LA-LREADHAENLERLAECLPALAWASEVDI-SALQGRVGV  289 (381)
T ss_pred             ccCceEeC---CceecccCC--CceEeecccCCCC-CC-CC-cCHHHHHHHHHHHHHhCcccchhhccCc-cccCceEEE
Confidence            12322222   258888754  5444443221111 11 11 111257788889999999986     43 578899999


Q ss_pred             eeccCCCCeEEecCCC-------------------------CCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCcc
Q 015072          327 YSMTPDKDFVIDFLGG-------------------------ELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGV  381 (413)
Q Consensus       327 ~~~t~d~~p~ig~~~~-------------------------~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~  381 (413)
                      ||+|+|++|+||++|.                         .  +|+|+++||+|+|+++||++|+++|++|+ +...+.
T Consensus       290 r~~t~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~a~G~~g~G~~~ap~~g~~la~~i~-~~~~~~  366 (381)
T TIGR03197       290 RCASPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYY--PGLYVLGGLGSRGLTSAPLAAEILAAQIC-GEPLPL  366 (381)
T ss_pred             eccCCCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCC--CCeEEEecccchHHHHHHHHHHHHHHHHh-CCCCCC
Confidence            9999999999999987                         6  99999999999999999999999999998 444344


Q ss_pred             c---cccccccccC
Q 015072          382 E---LRHFRIARFK  392 (413)
Q Consensus       382 ~---~~~~~~~R~~  392 (413)
                      +   ++.|+|+||.
T Consensus       367 ~~~~~~~~~~~rf~  380 (381)
T TIGR03197       367 ERDLLHALHPARFL  380 (381)
T ss_pred             cHHHHHhcChhhhc
Confidence            3   5789999985

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=100.00  E-value=1.7e-35  Score=272.56  Aligned_cols=325  Identities=19%  Similarity=0.196  Sum_probs=245.0

Q ss_pred             HHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc----CCccccchHHHHHHHHHHHHHhc----CCee-Eeeeeeee
Q 015072           24 YQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESSLLWEQAQSEI----GYKV-YFKAHQFD   94 (413)
Q Consensus        24 ~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~   94 (413)
                      ++|+++|.+|+|+|+....  .++|..+.|.+....    ....+.++...+.++|+++.++.    ++++ +...+.+.
T Consensus         1 ~~La~~G~~V~vle~~~~~--~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l~   78 (337)
T TIGR02352         1 WELAKRGHSVTLFDRDPMG--GGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTLV   78 (337)
T ss_pred             ChHHHCCCceEEEcCCCCC--cccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEEE
Confidence            5799999999999998743  467777777776543    33456677888899999887654    5565 44667776


Q ss_pred             eCC--CChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEec
Q 015072           95 MGP--SENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRD  172 (413)
Q Consensus        95 ~~~--~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~  172 (413)
                      +..  .+.+.++......+..+.+.++++.+++.+.+|. ++ .....+++.+.+++++|..++..+.+.+.+.|++++.
T Consensus        79 ~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~-l~-~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~  156 (337)
T TIGR02352        79 VAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPY-LS-GGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIE  156 (337)
T ss_pred             EeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCC-CC-cccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEc
Confidence            643  3344556666777778888999999999999997 54 4566789999999999999999999999999999999


Q ss_pred             CceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCCC
Q 015072          173 NTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGD  252 (413)
Q Consensus       173 ~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (413)
                      +++|++|..  +++ ....|.+.+|. ++||.||+|+|+|+..+.+      +|+.|.+++++.++.+....      ..
T Consensus       157 ~~~v~~i~~--~~~-~~~~v~~~~g~-~~a~~vV~a~G~~~~~l~~------~~~~~~~g~~~~~~~~~~~~------~~  220 (337)
T TIGR02352       157 HTEVQHIEI--RGE-KVTAIVTPSGD-VQADQVVLAAGAWAGELLP------LPLRPVRGQPLRLEAPAVPL------LN  220 (337)
T ss_pred             cceEEEEEe--eCC-EEEEEEcCCCE-EECCEEEEcCChhhhhccc------CCccccCceEEEeecccccc------CC
Confidence            999999998  621 33457777774 9999999999999987754      58899999998887443111      01


Q ss_pred             CceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCC
Q 015072          253 FPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPD  332 (413)
Q Consensus       253 ~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d  332 (413)
                      .+......+...|++|..+  |.+.++.......  . ......+..+.+.+.+.++||.+.+. .+...|+|+|++|+|
T Consensus       221 ~~~~~~~~~~~~y~~p~~~--g~~~iG~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~P~l~~~-~~~~~~~g~r~~t~D  294 (337)
T TIGR02352       221 RPLRAVVYGRRVYIVPRRD--GRLVVGATMEESG--F-DTTPTLGGIKELLRDAYTILPALKEA-RLLETWAGLRPGTPD  294 (337)
T ss_pred             cccceEEEcCCEEEEEcCC--CeEEEEEeccccC--c-cCCCCHHHHHHHHHHHHHhCCCcccC-cHHHheecCCCCCCC
Confidence            2221111123478888754  5344444221111  1 11112237889999999999999874 567899999999999


Q ss_pred             CCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072          333 KDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG  376 (413)
Q Consensus       333 ~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~  376 (413)
                      ++|+||++|..  +|+|+++|++|+|++++|++|+.+|++|.++
T Consensus       295 ~~piig~~~~~--~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~  336 (337)
T TIGR02352       295 NLPYIGEHPED--RRLLIATGHYRNGILLAPATAEVIADLILGK  336 (337)
T ss_pred             CCCEeCccCCC--CCEEEEcccccCceehhhHHHHHHHHHHhcC
Confidence            99999999987  8999999999999999999999999999854

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=100.00  E-value=1.9e-33  Score=263.19  Aligned_cols=347  Identities=18%  Similarity=0.177  Sum_probs=249.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceeccc--CC-ccccchHHHHHHHHHHHHHh
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATY--PE-DYYHPMVLESSLLWEQAQSE   81 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~   81 (413)
                      ++||+|||||++|+++|++|+++  |++|+|+|+....+ .++|..+.|.++...  .. ....++...+.+.|.++.++
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~-~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA-RHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ   80 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc-ccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999  99999999986443 356666677776542  11 12456778889999999888


Q ss_pred             cCCeeEeeeeeeeeCCC--ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           82 IGYKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      .+.. +...+.+.+...  +.+.+....+.+...+.+.+.++.+++.+.+|. +.   ...+++.+.++++++..+++.|
T Consensus        81 ~~~~-~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~-l~---~~~al~~p~~g~vd~~~l~~aL  155 (393)
T PRK11728         81 HGIP-YEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPN-IR---GLGAIFVPSTGIVDYRAVAEAM  155 (393)
T ss_pred             cCCC-cccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCC-cc---ccceEEcCCceEECHHHHHHHH
Confidence            7765 445666665433  233455566667778888899999999999998 43   3678999999999999999999


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCC--CcceeEEEEEEEEE
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGL--ELPIQAVETSVCYW  237 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~--~~p~~~~~~~~~~~  237 (413)
                      .+.+++.|++++++++|+++..  .  ++.+.|.+.+++ +.+|.||+|+|.|+..+.+.+ |.  ..++.|.+|+++.+
T Consensus       156 ~~~~~~~Gv~i~~~~~V~~i~~--~--~~~~~V~~~~g~-i~ad~vV~A~G~~s~~l~~~~-g~~~~~~v~p~rGq~~~~  229 (393)
T PRK11728        156 AELIQARGGEIRLGAEVTALDE--H--ANGVVVRTTQGE-YEARTLINCAGLMSDRLAKMA-GLEPDFRIVPFRGEYYRL  229 (393)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEe--c--CCeEEEEECCCE-EEeCEEEECCCcchHHHHHHh-CCCCCCceEEeeeEEEEe
Confidence            9999999999999999999988  6  345778777774 999999999999998887766 65  37899999999888


Q ss_pred             EecCC-CccccccCCCCceEE-ecCCCeeEecCCCCCCCeEEEEe--CCC---CcCCCCCCC---CC-------------
Q 015072          238 RIKEG-DEADYAVGGDFPSFA-SYGDPHVYGTPSLEYPGLIKIAL--HRG---YLCDPDRRP---WG-------------  294 (413)
Q Consensus       238 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~--~~~---~~~~~~~~~---~~-------------  294 (413)
                      +.... ....+.    +|... ......+|++|..+  |.+.+|.  +..   ...+.....   +.             
T Consensus       230 ~~~~~~~~~~~v----~~~p~~~~~~~g~~~~p~~~--G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK11728        230 APEKNQLVNHLI----YPVPDPAFPFLGVHLTRMID--GSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQ  303 (393)
T ss_pred             ccccccccCCce----ecCCCCCCCcceEEeecCCC--CCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHH
Confidence            64321 111100    11000 01112478888755  6555543  110   001110000   00             


Q ss_pred             --CCcchHHH---------HHHHHhhcCCCCCCCCCceeeeeeee--ccCCCCeEEecCCCCCCCCEEEEeCCCcccccc
Q 015072          295 --PGPLLDSL---------KELIQGRFAGRVDSSGPAATQLCMYS--MTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKM  361 (413)
Q Consensus       295 --~~~~~~~l---------~~~~~~~~p~~~~~~~~~~~~~g~~~--~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~  361 (413)
                        ..+.++++         .+.+.+++|.+.+. .+...|+|+||  +++|+.|+-+.+-.. .++.+.+.|..+-|+|.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~-~i~~~~~G~Rp~~~~~d~~~~~d~~i~~-~~~~~~~~~~~spg~t~  381 (393)
T PRK11728        304 KHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLS-DLQPYPAGVRAQAVSRDGKLVDDFLFVE-TPRSLHVCNAPSPAATS  381 (393)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHH-HcccCCCceeeeeeCCCCCccCceEEec-CCCEEEEcCCCCchHHc
Confidence              01134444         48899999999974 67789999999  899987765533211 27788889999999999


Q ss_pred             chHHHHHHHHHH
Q 015072          362 APVVGRILADLV  373 (413)
Q Consensus       362 a~~~a~~~a~~i  373 (413)
                      ||++|+.|++++
T Consensus       382 s~~ia~~v~~~~  393 (393)
T PRK11728        382 SLPIGEHIVSKV  393 (393)
T ss_pred             cHHHHHHHHhhC
Confidence            999999998863

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=100.00  E-value=9.6e-31  Score=252.67  Aligned_cols=340  Identities=15%  Similarity=0.167  Sum_probs=231.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC----ccccchHHHHHHHHHHHHHh
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE----DYYHPMVLESSLLWEQAQSE   81 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   81 (413)
                      .++||+|||||++|+++|++|+++|++|+|||+++..  .++|..+.+.++..+..    ....+........+.++...
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~--~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~   82 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA--TGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH   82 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC--CCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence            4699999999999999999999999999999998765  46777778888764321    11111222223334444332


Q ss_pred             cCCeeEeeeeeeeeC-C-CChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           82 IGYKVYFKAHQFDMG-P-SENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                          ++...+.+.+. + .+...+..+.+.+...|++.++++.+++.+.+|. ++ +...++++.+ ++++||.+++..+
T Consensus        83 ----~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~-l~-~~~~ga~~~~-dg~vdp~rl~~al  155 (546)
T PRK11101         83 ----CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPA-VN-PALIGAVKVP-DGTVDPFRLTAAN  155 (546)
T ss_pred             ----hhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCC-cC-ccceEEEEec-CcEECHHHHHHHH
Confidence                23344444432 2 2233445566667778888999999999999998 65 3456677777 5799999999999


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe---CCc--cEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEE
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSG--EEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSV  234 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g--~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~  234 (413)
                      ...+.++|++++++++|+++..  +++ ..+.|++   .++  .+++|+.||+|+|+|+..+.... +..+|+.|.||++
T Consensus       156 ~~~A~~~Ga~i~~~t~V~~i~~--~~~-~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~-g~~~~i~p~kG~~  231 (546)
T PRK11101        156 MLDAKEHGAQILTYHEVTGLIR--EGD-TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYA-DLRIRMFPAKGSL  231 (546)
T ss_pred             HHHHHhCCCEEEeccEEEEEEE--cCC-eEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhc-CCCCceeecceEE
Confidence            9999999999999999999988  632 2223332   223  36999999999999999998766 7889999999999


Q ss_pred             EEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCC-c-CCCCCCCCCCCcchHHHHHHHHhhcCC
Q 015072          235 CYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGY-L-CDPDRRPWGPGPLLDSLKELIQGRFAG  312 (413)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~p~  312 (413)
                      +.++...  ...+.. . .   ....+. .|++|.   ++.+++|++... . .+++... ...+.++.|.+.+.+++|.
T Consensus       232 lv~~~~~--~~~vi~-~-~---~~~~~~-~~~vp~---~~~~liGtT~~~~~~~~~~~~~-~t~~~i~~Ll~~~~~l~P~  299 (546)
T PRK11101        232 LIMDHRI--NNHVIN-R-C---RKPADA-DILVPG---DTISLIGTTSTRIDYDQIDDNR-VTAEEVDILLREGEKLAPV  299 (546)
T ss_pred             EEECCcc--CceeEe-c-c---CCCCCC-CEEEec---CCEEEEeeCCCCccCCCcCCCC-CCHHHHHHHHHHHHHhCCC
Confidence            9875211  100000 0 0   001122 234553   244444443211 1 1222111 1223789999999999999


Q ss_pred             CCCCCCCceeeeeeeeccC-CC----------CeEEecC--CCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072          313 RVDSSGPAATQLCMYSMTP-DK----------DFVIDFL--GGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG  376 (413)
Q Consensus       313 ~~~~~~~~~~~~g~~~~t~-d~----------~p~ig~~--~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~  376 (413)
                      +.+. .++..|+|+||... +.          .++++..  .+.  +|++.++|  |. ++.++.+|+.++++++..
T Consensus       300 l~~~-~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~--~gli~i~G--Gk-ltt~r~~Ae~v~d~v~~~  370 (546)
T PRK11101        300 MAKT-RILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL--DGFITITG--GK-LMTYRLMAEWATDAVCRK  370 (546)
T ss_pred             CCcc-CEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCC--CCeEEEEC--Ch-HHHHHHHHHHHHHHHHHh
Confidence            9874 68889999999843 22          2677743  334  88999997  43 888889999999999743

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.97  E-value=2.4e-28  Score=221.91  Aligned_cols=353  Identities=20%  Similarity=0.221  Sum_probs=259.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCCCCcceecccCCc---cccchHHHHHHHHHHHHH
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRATYPED---YYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   80 (413)
                      +++||+|||||++|+++|++|++.+  ++|+|+||.+..+ ..+|.++++.+|..+...   -..+++..+...+.++++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a-~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k   80 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA-QESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK   80 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc-cccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence            3699999999999999999999997  9999999998876 456668888888765322   234677888888899999


Q ss_pred             hcCCeeEeeeeeeeeC--CCChHHHHHHHHHHHhCCCC-ccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072           81 EIGYKVYFKAHQFDMG--PSENKSLRSVIASCRKNSVP-HQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      ++++++... +.+.+.  ..+.+.++.+++.+...++. .+.++++++.+..|. +. +....+++.+..+.+|+..++.
T Consensus        81 q~~~~f~~~-g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~-l~-~~~~aal~~p~~giV~~~~~t~  157 (429)
T COG0579          81 QLGIPFINC-GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPL-LN-EGAVAALLVPSGGIVDPGELTR  157 (429)
T ss_pred             HhCCccccc-CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCcc-cc-ccceeeEEcCCCceEcHHHHHH
Confidence            999887555 666554  34456778888888888987 899999999999998 54 3467789999999999999999


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccE-EEeCeEEEcCCcChhhhhhhhcCCC--cceeEEEEEE
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEE-FWGKKCVVTAGAWVGKLVKKISGLE--LPIQAVETSV  234 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~-i~ad~vV~A~G~~~~~l~~~~~g~~--~p~~~~~~~~  234 (413)
                      +|.+.++++|++++++++|++|++  .++ +...+.+++|++ ++|+.||+|+|.++..++++. |..  ....|.+|+.
T Consensus       158 ~l~e~a~~~g~~i~ln~eV~~i~~--~~d-g~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~-g~~~~~~~~P~~G~y  233 (429)
T COG0579         158 ALAEEAQANGVELRLNTEVTGIEK--QSD-GVFVLNTSNGEETLEAKFVINAAGLYADPLAQMA-GIPEDFKIFPVRGEY  233 (429)
T ss_pred             HHHHHHHHcCCEEEecCeeeEEEE--eCC-ceEEEEecCCcEEEEeeEEEECCchhHHHHHHHh-CCCcccccCccceEE
Confidence            999999999999999999999999  622 256667788876 999999999999999999887 543  4567888988


Q ss_pred             EEEEecCCC-c-cccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCC-CCCCCCcchHHHHHHHHhhcC
Q 015072          235 CYWRIKEGD-E-ADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDR-RPWGPGPLLDSLKELIQGRFA  311 (413)
Q Consensus       235 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~p  311 (413)
                      .++...... . +.+.+   .|..-. ....+..+++.+  |.+..|-+..+...... ......+..+.+.....+.||
T Consensus       234 ~~~~~~~~~~~~~~Iy~---~p~~~~-p~~gV~~~~~id--G~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~~  307 (429)
T COG0579         234 LVLDNEVKALLRHKIYP---VPNPGL-PGLGVHHTPTID--GSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGMP  307 (429)
T ss_pred             EEEcccccccccceeec---CCCCCC-CCCcceeecccC--CeEEECCCcccchhhhccccccccchhhhHHHhhhhhcc
Confidence            877632111 1 11110   000000 012355555543  54555443332211011 011112277888888888998


Q ss_pred             CCC-CCCCCceeeeeeeec-----cCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072          312 GRV-DSSGPAATQLCMYSM-----TPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS  375 (413)
Q Consensus       312 ~~~-~~~~~~~~~~g~~~~-----t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~  375 (413)
                      .+. .. .....+.|.||+     .++...+|-.....  ++.....|.-..|++.++..++.+.+++.+
T Consensus       308 ~~~~~~-~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~--~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~  374 (429)
T COG0579         308 DLGIKN-NVLANYAGIRPILKEPRLPALDFIIPEAKDE--DWFINVAGIRSQGLTADPAIAGGVLELLTE  374 (429)
T ss_pred             cccccc-cchhhhheeccccccccccccceecccccCC--CCceeeeeEEccccccChhHhhhHhhhccc
Confidence            877 32 356678889994     55666666645444  788888999999999999999999999864

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.97  E-value=2.2e-28  Score=234.82  Aligned_cols=348  Identities=17%  Similarity=0.166  Sum_probs=220.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc--CCccccchHHHHHHHHHHHHHh
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESSLLWEQAQSE   81 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   81 (413)
                      |..++||+|||||++|+++|++|+++|++|+|||+++..  .++|..+.+.++...  ......++..++...+..+.+.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~--~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~   80 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA--QGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAA   80 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC--CCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            455699999999999999999999999999999999876  356666666665432  2222455666666666655443


Q ss_pred             cCCeeEeeeeeeee-CCCChHHHHH--HHHHHHhCC----C-CccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHH
Q 015072           82 IGYKVYFKAHQFDM-GPSENKSLRS--VIASCRKNS----V-PHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPT  153 (413)
Q Consensus        82 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~g----~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  153 (413)
                      ... +....+.+.. ...+...+..  -...+...+    + +.+.++..+..+..|.    .....+.+...+++++|.
T Consensus        81 ap~-l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l----~~~~~~a~~~~dg~vd~~  155 (502)
T PRK13369         81 APH-IIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPL----KPEYTKGFEYSDCWVDDA  155 (502)
T ss_pred             CCc-cccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCc----hHhcCEEEEEcCeeecHH
Confidence            221 1122221111 1111111110  011111111    2 2344554444333332    223445566788899999


Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc----cEEEeCeEEEcCCcChhhhhhhhcCCC--cce
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG----EEFWGKKCVVTAGAWVGKLVKKISGLE--LPI  227 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g----~~i~ad~vV~A~G~~~~~l~~~~~g~~--~p~  227 (413)
                      +++..+...+.+.|++++.+++|+++..  +  ++.+.+.+.++    .+++|+.||+|+|+|+..+.+.+.|..  .++
T Consensus       156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~--~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v  231 (502)
T PRK13369        156 RLVVLNALDAAERGATILTRTRCVSARR--E--GGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNV  231 (502)
T ss_pred             HHHHHHHHHHHHCCCEEecCcEEEEEEE--c--CCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcce
Confidence            9999999999999999999999999998  6  34556655443    259999999999999999987554643  469


Q ss_pred             eEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCC-CCcCCCCCCCCCCCcchHHHHHHH
Q 015072          228 QAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHR-GYLCDPDRRPWGPGPLLDSLKELI  306 (413)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  306 (413)
                      .|.+|+++.++...  .    . .....+...+.+.+|++|..+  +...+|++. ....++.... ...+.++.|.+.+
T Consensus       232 ~p~kG~~lv~~~~~--~----~-~~~~~~~~~dgr~~~i~P~~~--~~~liGtTd~~~~~~~~~~~-~~~~~i~~ll~~~  301 (502)
T PRK13369        232 RLVKGSHIVVPKFW--D----G-AQAYLFQNPDKRVIFANPYEG--DFTLIGTTDIAYEGDPEDVA-ADEEEIDYLLDAA  301 (502)
T ss_pred             EEeeEEEEEeCCcc--C----C-CceEEEeCCCCeEEEEEEecC--CEEEEEecCccccCCCCCCC-CCHHHHHHHHHHH
Confidence            99999988764111  1    0 001122223344578999853  444444432 1122222211 1223899999999


Q ss_pred             HhhcC-CCCCCCCCceeeeeeeeccCCC---------CeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072          307 QGRFA-GRVDSSGPAATQLCMYSMTPDK---------DFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG  376 (413)
Q Consensus       307 ~~~~p-~~~~~~~~~~~~~g~~~~t~d~---------~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~  376 (413)
                      +++|| .+.+. .+...|+|+||.++|+         ..+|-.......++++.+.|   -++|.+..+|+.+++.++..
T Consensus       302 ~~~~~~~l~~~-~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~G---gk~Tt~r~~Ae~v~d~~~~~  377 (502)
T PRK13369        302 NRYFKEKLRRE-DVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFG---GKITTFRKLAEHALERLKPF  377 (502)
T ss_pred             HHhhCCCCCHh-HEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeC---ChHhhHHHHHHHHHHHHHHh
Confidence            99997 77753 5788999999998753         33343332111267888887   37999999999999998743

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.97  E-value=3.5e-28  Score=237.23  Aligned_cols=351  Identities=15%  Similarity=0.092  Sum_probs=218.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc--------C-CccccchHHHHHHHH
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--------P-EDYYHPMVLESSLLW   75 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~   75 (413)
                      .+++||+|||||++|+++|++|+++|++|+|||+++..+  ++|..+.+.++...        . +.....+..++...+
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~--GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er  146 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEER  146 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCC--CcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHH
Confidence            346999999999999999999999999999999998764  45555554444321        0 111234455555544


Q ss_pred             HHHHHhcCCeeEeeeeeeeeCCC--ChHH-H--HHHHHHH-HhCCC-CccccCHHHHHHhcCCcccCCC---CeEEEEec
Q 015072           76 EQAQSEIGYKVYFKAHQFDMGPS--ENKS-L--RSVIASC-RKNSV-PHQVLDCRQVLQKYSGRIEIPE---NWVGVTTE  145 (413)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~--~~~~~~~-~~~g~-~~~~l~~~~~~~~~p~~~~~~~---~~~~~~~~  145 (413)
                      ..+.+.... +......+.....  .... .  ....+.+ ...+. ..++++.+++.+.+|. ++...   ...+.+.+
T Consensus       147 ~~l~~~ap~-l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~-L~~~~~~~~l~ga~~~  224 (627)
T PLN02464        147 KQLIENAPH-LCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPT-LAKKGKDGSLKGTVVY  224 (627)
T ss_pred             HHHHhhChh-hccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCC-CCccccccceeEEEEe
Confidence            444332111 0011111100000  0000 0  0111111 11222 3478999999999998 65220   24444466


Q ss_pred             CCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeecc-CCCcEEEEe---CCcc--EEEeCeEEEcCCcChhhhhhh
Q 015072          146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD-VRGGVTVVT---SSGE--EFWGKKCVVTAGAWVGKLVKK  219 (413)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~-~~~~~~v~~---~~g~--~i~ad~vV~A~G~~~~~l~~~  219 (413)
                      .++++||.+++..+.+.+.+.|++++.+++|+++..  ++ ++..+.|+.   .+++  ++.+|.||+|+|+|+..+...
T Consensus       225 ~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~--~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~  302 (627)
T PLN02464        225 YDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIK--DESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKM  302 (627)
T ss_pred             cCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEE--ecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHh
Confidence            779999999999999999999999999999999988  63 223333332   2333  589999999999999999887


Q ss_pred             hcCCCc-ceeEEEEEEEEEEecCCCccccccCCCCceE--EecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCC
Q 015072          220 ISGLEL-PIQAVETSVCYWRIKEGDEADYAVGGDFPSF--ASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPG  296 (413)
Q Consensus       220 ~~g~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~  296 (413)
                      +.+... ++.|.+|+++.+...      +.+ ..++..  ....++.+|++|. +  |.++++++.....++.... ...
T Consensus       303 ~g~~~~~~I~p~kG~hlvl~~~------~~~-~~~~~i~~~~~dgr~~~~~P~-~--g~~liGtTd~~~~~~~~~~-~t~  371 (627)
T PLN02464        303 ADGKAKPMICPSSGVHIVLPDY------YSP-EGMGLIVPKTKDGRVVFMLPW-L--GRTVAGTTDSKTPITMLPE-PHE  371 (627)
T ss_pred             ccCcCCCceEeeeeEEEecccc------cCC-CCceEEecCCCCCCEEEEEec-C--CcEEEecCCCCCCCCCCCC-CCH
Confidence            633334 499999988765311      000 011111  1234556899998 3  4344444322111111111 122


Q ss_pred             cchHHHHHHHHhhcC-CCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCcc-----ccccchHHHHHHH
Q 015072          297 PLLDSLKELIQGRFA-GRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGH-----GFKMAPVVGRILA  370 (413)
Q Consensus       297 ~~~~~l~~~~~~~~p-~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~-----G~~~a~~~a~~~a  370 (413)
                      +.++.|.+.+++++| .+... .+...|+|+||.++|..|.++..+..  ++++...|++--     =+|....+|+.+.
T Consensus       372 ~ei~~Ll~~a~~~~~~~l~~~-~v~~~waG~RPl~~d~~~~~~~~~sr--~~~i~~~~~gli~i~GGk~Tt~R~mAe~~~  448 (627)
T PLN02464        372 DEIQFILDAISDYLNVKVRRS-DVLSAWSGIRPLAVDPSAKSTESISR--DHVVCEEPDGLVTITGGKWTTYRSMAEDAV  448 (627)
T ss_pred             HHHHHHHHHHHHhhCCCCChh-hEEEEEEeEEeeccCCCCCcccccCC--ceEEEecCCCeEEEECChHHHHHHHHHHHH
Confidence            389999999999998 67653 56789999999999987776655543  555555544322     2677788999999


Q ss_pred             HHHHc
Q 015072          371 DLVLS  375 (413)
Q Consensus       371 ~~i~~  375 (413)
                      +.+++
T Consensus       449 d~~~~  453 (627)
T PLN02464        449 DAAIK  453 (627)
T ss_pred             HHHHH
Confidence            98875

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.97  E-value=1.3e-27  Score=229.19  Aligned_cols=350  Identities=18%  Similarity=0.157  Sum_probs=215.8

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc--CCccccchHHHHHHHHHHH
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESSLLWEQA   78 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   78 (413)
                      |+ |.+++||+|||||++|+++|+.|+++|++|+|||+++..+  ++|..+.+.++...  .......+..++...+..+
T Consensus         1 ~~-~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~--GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l   77 (508)
T PRK12266          1 MT-MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS--ATSSASTKLIHGGLRYLEHYEFRLVREALAEREVL   77 (508)
T ss_pred             CC-CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC--CccccccccccchHHHhhhccHHHHHHHHHHHHHH
Confidence            55 3456999999999999999999999999999999988764  44545555555432  1122345666666666555


Q ss_pred             HHhcCCeeEeeeeeee-eCCCChHHH-HHH-HHHHHhCCCCccccCHHHHHHhc-----CCcccCCCCeEEEEecCCeee
Q 015072           79 QSEIGYKVYFKAHQFD-MGPSENKSL-RSV-IASCRKNSVPHQVLDCRQVLQKY-----SGRIEIPENWVGVTTELGGVI  150 (413)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~g~~~~~l~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~  150 (413)
                      .+....-. .+...+. ........+ ... .......+. ...++..+.....     +. +.  ....+.+.+.++++
T Consensus        78 ~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~-~~~l~~~~~~~~~~~~~~~~-L~--~~l~g~~~~~dg~v  152 (508)
T PRK12266         78 LRMAPHII-WPMRFVLPHRPHLRPAWMIRAGLFLYDHLGK-RKSLPGSRGLDLGRDPAGSP-LK--PEITRGFEYSDCWV  152 (508)
T ss_pred             HHhCCCcc-cccceEEEecccccchHHHHHHHHHHHhhcC-CCCCChhhhhchhhcccCCC-cc--hhhcEEEEEcCccc
Confidence            54432111 1111111 111000000 000 011111111 1223333322222     33 22  22333355677789


Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---cc--EEEeCeEEEcCCcChhhhhhhhcCC--
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---GE--EFWGKKCVVTAGAWVGKLVKKISGL--  223 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~--~i~ad~vV~A~G~~~~~l~~~~~g~--  223 (413)
                      ||.+++..+...+.+.|++++++++|+++..  +  ++.+.+.+.+   |+  +++|+.||+|+|+|+..+.+.+.|.  
T Consensus       153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~--~--~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~  228 (508)
T PRK12266        153 DDARLVVLNARDAAERGAEILTRTRVVSARR--E--NGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS  228 (508)
T ss_pred             CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE--e--CCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCC
Confidence            9999999999999999999999999999988  6  3445555432   42  6999999999999999987754344  


Q ss_pred             CcceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCC-CcCCCCCCCCCCCcchHHH
Q 015072          224 ELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRG-YLCDPDRRPWGPGPLLDSL  302 (413)
Q Consensus       224 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  302 (413)
                      ..++.|.+|+++.++....      . .....+...+++.+|++|..+  |...+|++.. ...+++... ...+.++.|
T Consensus       229 ~~~i~p~kG~~lvl~~~~~------~-~~~~~~~~~dgr~v~~~P~~~--g~~liGttd~~~~~~~~~~~-~~~~~i~~L  298 (508)
T PRK12266        229 PYGIRLVKGSHIVVPRLFD------H-DQAYILQNPDGRIVFAIPYED--DFTLIGTTDVEYKGDPAKVA-ISEEEIDYL  298 (508)
T ss_pred             CcceeeeeeEEEEECCcCC------C-CcEEEEeCCCCCEEEEEEeCC--CeEEEecCCCCCCCCCCCCC-CCHHHHHHH
Confidence            4589999999887642111      0 111222233455678888854  5555554321 112222111 122378999


Q ss_pred             HHHHHhhcC-CCCCCCCCceeeeeeeeccCCC---------CeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072          303 KELIQGRFA-GRVDSSGPAATQLCMYSMTPDK---------DFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADL  372 (413)
Q Consensus       303 ~~~~~~~~p-~~~~~~~~~~~~~g~~~~t~d~---------~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~  372 (413)
                      .+.+++++| .+.. ..++..|+|+||.++|+         ..+|-.+.....+|++.++|  | .+|.+..+|+.+.+.
T Consensus       299 l~~~~~~~p~~l~~-~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~G--g-k~Tt~r~mAe~~~~~  374 (508)
T PRK12266        299 CKVVNRYFKKQLTP-ADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFG--G-KITTYRKLAEHALEK  374 (508)
T ss_pred             HHHHHHhcCCCCCH-HHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEc--C-hHHHHHHHHHHHHHH
Confidence            999999996 6765 35788999999999884         34554332111277888886  3 599999999999999


Q ss_pred             HHcC
Q 015072          373 VLSG  376 (413)
Q Consensus       373 i~~~  376 (413)
                      ++..
T Consensus       375 ~~~~  378 (508)
T PRK12266        375 LAPY  378 (508)
T ss_pred             HHHh
Confidence            8733

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=99.97  E-value=7.2e-29  Score=205.92  Aligned_cols=350  Identities=21%  Similarity=0.192  Sum_probs=225.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcC------CcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHH
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRG------QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQ   77 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g------~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (413)
                      +.+...|+|||||+.|..+||+|++++      +.|+|+|+....+  ++|+..+|.+...........+...+.++.++
T Consensus         7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~--gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~   84 (380)
T KOG2852|consen    7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG--GASGKASGFLAKWCQPSIIQPLATLSFKLHEE   84 (380)
T ss_pred             cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc--ccccccchhhHhhhCCcccchhhHHHHHHHHH
Confidence            345688999999999999999999986      7999999988874  56666666666433444467888899999999


Q ss_pred             HHHhcCC-ee--EeeeeeeeeCCC-ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEE-ecCCeeecH
Q 015072           78 AQSEIGY-KV--YFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVT-TELGGVIKP  152 (413)
Q Consensus        78 ~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~  152 (413)
                      +.++++- +-  +.....+.+... ++..       -.+.....+++.+......           ..+- ....++++|
T Consensus        85 LsdeydGvnnwgYRaltTws~ka~~en~~-------p~k~pegldWi~~e~v~~~-----------ssiG~t~ttaqvhP  146 (380)
T KOG2852|consen   85 LSDEYDGVNNWGYRALTTWSCKADWENTN-------PAKVPEGLDWIQRERVQKC-----------SSIGSTNTTAQVHP  146 (380)
T ss_pred             HHHhhcCcccccceeeeEEEEEeecccCC-------cccCCcchhhhhhHHhhhh-----------eeccCCCccceeCH
Confidence            9887642 21  111112211100 0000       0001111233333222111           1111 234578999


Q ss_pred             HHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEe---CC-ccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072          153 TKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVT---SS-GEEFWGKKCVVTAGAWVGKLVKKISGLELPI  227 (413)
Q Consensus       153 ~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~---~~-g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~  227 (413)
                      ..|++.+...+.+.| |++.+ ..|.++..  +.+ ....+-.   .+ ......+++|+++|+|+..+++.+     ++
T Consensus       147 ~lFc~~i~sea~k~~~V~lv~-Gkv~ev~d--Ek~-r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~-----rI  217 (380)
T KOG2852|consen  147 YLFCHFILSEAEKRGGVKLVF-GKVKEVSD--EKH-RINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT-----RI  217 (380)
T ss_pred             HHHHHHHHHHHHhhcCeEEEE-eeeEEeec--ccc-cccccchhhhcCceEEeeeeEEEEecCCCchhhcccc-----cc
Confidence            999999999988876 88886 56888865  311 1111211   11 335778999999999999887764     66


Q ss_pred             eEEEEEEEEEEecCCCccccccCCCCceEEecC-----CCeeEecCCCCCCCeEEEEeCCCCcCCCCCC-CCCC-CcchH
Q 015072          228 QAVETSVCYWRIKEGDEADYAVGGDFPSFASYG-----DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR-PWGP-GPLLD  300 (413)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~-~~~~-~~~~~  300 (413)
                      ...+-+.+.++++...   +.+..-+..+...+     +...|.++..+  -++.+.+... ..-|+.. +... .+.++
T Consensus       218 sglrihsI~l~~~e~~---v~~~avf~~l~~~~g~ei~~pe~y~rkd~E--vyicg~~~~e-~~lPedsd~v~~npeki~  291 (380)
T KOG2852|consen  218 SGLRIHSITLSPGEKP---VGPSAVFCELNTMDGLEICKPEEYARKDRE--VYICGETDKE-HLLPEDSDDVFVNPEKII  291 (380)
T ss_pred             ceeeeeeEEecCCCCC---CCCceEEEEEEeCCCccccCcceeecCCce--EEEecCCCcc-ccCCcccccceeCHHHHH
Confidence            6667777777644321   22211011111111     22456655432  2333333222 2223332 2222 23778


Q ss_pred             HHHHHHHhhcCCCCCCCCCceeeeeeeeccCC-CCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCC
Q 015072          301 SLKELIQGRFAGRVDSSGPAATQLCMYSMTPD-KDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQ  379 (413)
Q Consensus       301 ~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d-~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~  379 (413)
                      .|.+....+.+.+.+. ......+||-|.+.+ +.|+||+.+    .++|+++||+-+|++.||+.|+.+|++|++|+..
T Consensus       292 ~Lk~~a~~v~s~l~ks-~v~~~qacfLP~sn~tg~PvIget~----sg~yVaagHscWGItnaPaTG~~mAEllldgeaT  366 (380)
T KOG2852|consen  292 ELKEMADLVSSELTKS-NVLDAQACFLPTSNITGIPVIGETK----SGVYVAAGHSCWGITNAPATGKCMAELLLDGEAT  366 (380)
T ss_pred             HHHHHHHHhhhhhccc-hhhhhhhccccccCCCCCceEeecC----CceEEeecccccceecCcchhHHHHHHHhcccee
Confidence            8888778888888863 455678999999877 999999998    6899999999999999999999999999999999


Q ss_pred             ccccccccccccCC
Q 015072          380 GVELRHFRIARFKE  393 (413)
Q Consensus       380 ~~~~~~~~~~R~~~  393 (413)
                      +.+.+.|+|.|+.+
T Consensus       367 Sanid~f~p~~~~~  380 (380)
T KOG2852|consen  367 SANIDPFDPNLGEK  380 (380)
T ss_pred             eeecCccCccccCC
Confidence            99999999999753

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.95  E-value=1.7e-24  Score=200.73  Aligned_cols=344  Identities=21%  Similarity=0.210  Sum_probs=223.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecc--cCCccccchHHHHHHHHHHHHHhc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT--YPEDYYHPMVLESSLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   82 (413)
                      +.++||+|||||++|+.+|+.++.+|++|+|+|+++...  ++|..+.+.+|..  |.......+..++...-+.+.+..
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~As--GTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A   87 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLAS--GTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA   87 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccC--cccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999999985  5566666777654  333344556666666655554443


Q ss_pred             CCeeEeeeeeeeeCCC---ChHHHH-HHHHHHHhCCC-----CccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHH
Q 015072           83 GYKVYFKAHQFDMGPS---ENKSLR-SVIASCRKNSV-----PHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPT  153 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~g~-----~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  153 (413)
                      .. +..+...+....+   ....+. .+.......++     ..+.++..+.....|. ++ ++...+.+...++++|+.
T Consensus        88 PH-~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~-l~-~~~l~ga~~y~D~~vdda  164 (532)
T COG0578          88 PH-LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPA-LK-KDGLKGAFRYPDGVVDDA  164 (532)
T ss_pred             cc-ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcc-cc-hhhccceEEEccceechH
Confidence            22 2333333332222   111121 11111112232     4577777778888887 55 445555666677889999


Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---cc--EEEeCeEEEcCCcChhhhhhhhcCCC----
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---GE--EFWGKKCVVTAGAWVGKLVKKISGLE----  224 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~--~i~ad~vV~A~G~~~~~l~~~~~g~~----  224 (413)
                      +++-.....+.+.|.++++.++|+++.+  ++  +.+.|+..|   |+  +++|+.||+|||+|+.++++.. +..    
T Consensus       165 RLv~~~a~~A~~~Ga~il~~~~v~~~~r--e~--~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~-~~~~~~~  239 (532)
T COG0578         165 RLVAANARDAAEHGAEILTYTRVESLRR--EG--GVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA-GLEQSPH  239 (532)
T ss_pred             HHHHHHHHHHHhcccchhhcceeeeeee--cC--CEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh-cccCCCC
Confidence            9999888999999999999999999999  73  344554432   33  6999999999999999998877 333    


Q ss_pred             cceeEEEEEEEEEEecCCCccccccCCCCceE-Eec-CCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHH
Q 015072          225 LPIQAVETSVCYWRIKEGDEADYAVGGDFPSF-ASY-GDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSL  302 (413)
Q Consensus       225 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (413)
                      ..++|.+|.++++.-.-...        .+.+ ... +.+.+|.+|...  ..+.++++...+.+|+....+ ++.++.|
T Consensus       240 ~~vr~skGsHlVv~~~~~~~--------~a~~~~~~~d~r~~f~iP~~~--~~liGTTD~~~~~~~~~~~~~-~eEidyl  308 (532)
T COG0578         240 IGVRPSKGSHLVVDKKFPIN--------QAVINRCRKDGRIVFAIPYEG--KTLIGTTDTDYDGDPEDPRIT-EEEIDYL  308 (532)
T ss_pred             ccceeccceEEEecccCCCC--------ceEEeecCCCCceEEEecCCC--CEEeeccccccCCCcccCCCC-HHHHHHH
Confidence            46999999998886311111        2222 232 556788888864  444555433333344443322 2379999


Q ss_pred             HHHHHh-hcCCCCCCCCCceeeeeeeeccCCCCe---------EEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072          303 KELIQG-RFAGRVDSSGPAATQLCMYSMTPDKDF---------VIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADL  372 (413)
Q Consensus       303 ~~~~~~-~~p~~~~~~~~~~~~~g~~~~t~d~~p---------~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~  372 (413)
                      ++.++. +-|.+.. ..+...|+|+||...|+.+         ++-.+...  .+++..+|  | =+|.--..|+.+.+.
T Consensus       309 l~~~~~~~~~~l~~-~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~--~glltv~G--G-KlTTyR~maE~a~d~  382 (532)
T COG0578         309 LDAVNRYLAPPLTR-EDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAEL--AGLLTVAG--G-KLTTYRKMAEDALDA  382 (532)
T ss_pred             HHHHHhhhhccCCh-hheeeeeeeeeeccCCCCCchhhccCceEEEecCCC--CCeEEEec--c-hhHHhHHHHHHHHHH
Confidence            999994 4456665 3678899999998765443         33323322  45666554  3 245555677777777


Q ss_pred             HHc
Q 015072          373 VLS  375 (413)
Q Consensus       373 i~~  375 (413)
                      +++
T Consensus       383 v~~  385 (532)
T COG0578         383 VCE  385 (532)
T ss_pred             HHH
Confidence            763

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=99.94  E-value=1.8e-24  Score=208.94  Aligned_cols=322  Identities=16%  Similarity=0.210  Sum_probs=218.3

Q ss_pred             HHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccC----CccccchHHHHHHHHHHHHHhcCCeeEeeeeeeeeCC-
Q 015072           23 AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP----EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGP-   97 (413)
Q Consensus        23 A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   97 (413)
                      |+.|+++|++|+|||+++.+  .++|..+.+.++..+.    .....+.+......|.++...    .+.+.+.+.+.. 
T Consensus         1 ArdLa~rGl~V~llEk~d~~--~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~----~~~~~g~L~va~~   74 (516)
T TIGR03377         1 MRDLALRGLRCILLEQGDLA--HGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH----CVEDTGGLFITLP   74 (516)
T ss_pred             ChhHHHCCCCEEEEeCCCcc--cccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH----hccCCCceEEecC
Confidence            67899999999999998765  4677777777775431    111122222334445544332    344556665542 


Q ss_pred             -CChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceE
Q 015072           98 -SENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEV  176 (413)
Q Consensus        98 -~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V  176 (413)
                       .+...+..+...+...|++.++++++++.+.+|. ++ +....+++.+ ++.+||.+++..+.+.+.++|++++++++|
T Consensus        75 ~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~-l~-~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V  151 (516)
T TIGR03377        75 EDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPN-LN-PDLIGAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKV  151 (516)
T ss_pred             cccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCC-CC-hhheEEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEE
Confidence             2334456666777788888999999999999998 54 3455677777 689999999999999999999999999999


Q ss_pred             EEEEeeeccCCCcEEEEe---CCcc--EEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCccccccCC
Q 015072          177 KTVLKVKDDVRGGVTVVT---SSGE--EFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGG  251 (413)
Q Consensus       177 ~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  251 (413)
                      ++|..  +++ ..+.|++   .+|+  ++.|+.||+|+|+|+..+.+.. |..+|+.|.+|+++.++...  ...+    
T Consensus       152 ~~i~~--~~~-~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~~i~p~kG~~lv~~~~~--~~~~----  221 (516)
T TIGR03377       152 TGLIR--EGG-RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA-GLDIRMFPAKGALLIMNHRI--NNTV----  221 (516)
T ss_pred             EEEEE--ECC-EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc-CCCCceecceEEEEEECCcc--cccc----
Confidence            99998  632 2223332   2342  6999999999999999998876 77899999999998875211  1111    


Q ss_pred             CCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccC
Q 015072          252 DFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTP  331 (413)
Q Consensus       252 ~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~  331 (413)
                       .+......+. .|++|. +  +..++|++.....+++... ...+.++.+.+.+.+++|.+... .++..|+|+||...
T Consensus       222 -~~~~~~~~~g-~~~~P~-~--~~~liGtT~~~~~~~~~~~-~~~~~v~~ll~~~~~~~P~l~~~-~i~~~~aGvRPl~~  294 (516)
T TIGR03377       222 -INRCRKPSDA-DILVPG-D--TISIIGTTSERIDDPDDLP-VTQEEVDVLLREGAKLAPMLAQT-RILRAFAGVRPLVA  294 (516)
T ss_pred             -cccccCCCCC-cEEEEC-C--CeEEEecCCCCCCCCCCCC-CCHHHHHHHHHHHHHhCcccccC-CEEEEEeecccccC
Confidence             1111111222 456674 2  4444444322212222211 12237899999999999999864 67889999999764


Q ss_pred             CC----------C-eEEec--CCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072          332 DK----------D-FVIDF--LGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS  375 (413)
Q Consensus       332 d~----------~-p~ig~--~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~  375 (413)
                      +.          . .+++.  .++.  +|++.++|  |+ +|.++.+|+.++++++.
T Consensus       295 ~~~~~~~~~~sR~~~i~~~~~~~~~--~g~i~i~G--Gk-ltt~r~~Ae~~~d~~~~  346 (516)
T TIGR03377       295 VDDDPSGRNISRGIVLLDHAERDGL--PGFITITG--GK-LTTYRLMAEWATDVVCK  346 (516)
T ss_pred             CCCCCCccccCCCeEEeecccccCC--CCeEEEec--ch-HHHHHHHHHHHHHHHHH
Confidence            32          2 35552  2344  88999887  43 99999999999999974

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.93  E-value=1.7e-23  Score=198.56  Aligned_cols=228  Identities=15%  Similarity=0.153  Sum_probs=163.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCC-CCCCCCCCCcceeccc-----CCcc---ccch---------
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLH-HRGSSHGESRTIRATY-----PEDY---YHPM---------   67 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~-~~~~s~~~~~~~~~~~-----~~~~---~~~~---------   67 (413)
                      +||+|||||++|+++|++|++.  |.+|+|+|+....+ +.+..+.++|..+...     ....   ...+         
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~   80 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ   80 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence            5999999999999999999997  99999999976433 2222224544443332     2211   1122         


Q ss_pred             HHHHHHHHHHHHHh--cC--CeeEeeeeeeeeC--CCChHHHHHHHHHHHhCCC--Cccc-cCHHHHHHhcCCcccC---
Q 015072           68 VLESSLLWEQAQSE--IG--YKVYFKAHQFDMG--PSENKSLRSVIASCRKNSV--PHQV-LDCRQVLQKYSGRIEI---  135 (413)
Q Consensus        68 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~--~~~~-l~~~~~~~~~p~~~~~---  135 (413)
                      ...+.++|..+.+.  ..  .+++.+.+.+.+.  ..+.+.++...+.++..++  .+++ ++++++.+.+|. +..   
T Consensus        81 ~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~-l~~~r~  159 (483)
T TIGR01320        81 FQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPL-MAAGRD  159 (483)
T ss_pred             HHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCC-cccCCC
Confidence            23466777766654  11  2223457777665  3344556677777777776  3555 799999999998 442   


Q ss_pred             -CCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe---CCcc--EEEeCeEEEcC
Q 015072          136 -PENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGE--EFWGKKCVVTA  209 (413)
Q Consensus       136 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~vV~A~  209 (413)
                       .....+++.+.++.+||..+++.|.+.+++.|++++++++|++|..  +++ +.+.+.+   .+|+  +++||+||+|+
T Consensus       160 ~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~--~~~-~~v~v~~~~~~~g~~~~i~A~~VV~AA  236 (483)
T TIGR01320       160 FSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKR--QSD-GSWTVTVKNTRTGGKRTLNTRFVFVGA  236 (483)
T ss_pred             CCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCC-CeEEEEEeeccCCceEEEECCEEEECC
Confidence             2356799999999999999999999999999999999999999988  632 3455542   3342  58999999999


Q ss_pred             CcChhhhhhhhcCCC----cceeEEEEEEEEEEec
Q 015072          210 GAWVGKLVKKISGLE----LPIQAVETSVCYWRIK  240 (413)
Q Consensus       210 G~~~~~l~~~~~g~~----~p~~~~~~~~~~~~~~  240 (413)
                      |+|+..+++.+ |+.    .++.|.+|+++.++.+
T Consensus       237 G~~s~~La~~~-Gi~~~~~~~i~P~~Gq~l~l~~~  270 (483)
T TIGR01320       237 GGGALPLLQKS-GIPEVKGFAGFPVSGLFLRCGNP  270 (483)
T ss_pred             CcchHHHHHHc-CCCcCCCCceeeeeEEEEEeCCH
Confidence            99999998876 653    5789999999877633

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.93  E-value=1.3e-23  Score=198.48  Aligned_cols=227  Identities=20%  Similarity=0.237  Sum_probs=165.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc-C-CcEEEEcccCCCCC-CCCCCCCCcceecccCC----ccccchHHHHHHHHHH
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR-G-QKTLLLEQFDFLHH-RGSSHGESRTIRATYPE----DYYHPMVLESSLLWEQ   77 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g-~~V~lvE~~~~~~~-~~~s~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   77 (413)
                      +.++||+|||||++|+++|++|++. + .+|+||||.+..+. .+...++++.++.....    +.....+..+.+.+.+
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~  122 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRN  122 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999996 3 69999999864321 11123344444332111    1123344455666666


Q ss_pred             HHHhcC----CeeEeeeeeeeeC--CCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccC-------CCCeEEEEe
Q 015072           78 AQSEIG----YKVYFKAHQFDMG--PSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEI-------PENWVGVTT  144 (413)
Q Consensus        78 ~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~-------~~~~~~~~~  144 (413)
                      +...+.    ..++.+.+.+.+.  ..+.+.++...+.++..+.++++++.+++.+.+|. +..       +....+++.
T Consensus       123 ~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~-v~~~~~~~~~~e~~~Al~~  201 (497)
T PTZ00383        123 YLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPR-VVLKNNHTLREEPLAALYV  201 (497)
T ss_pred             HHHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcc-cccCccccccccceEEEEe
Confidence            655432    2345667777664  33344566667777777777899999999999998 431       345678898


Q ss_pred             cCC-eeecHHHHHHHHHHHHHH----cC--CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhh
Q 015072          145 ELG-GVIKPTKAVSMFQTLAIK----NG--AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLV  217 (413)
Q Consensus       145 ~~~-~~~~~~~~~~~l~~~~~~----~g--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~  217 (413)
                      +.+ +.+|+..+++.+.+.+++    .|  ++++++++|++|..  .+ ++.+.|++++|+ ++||+||+|+|+|+..++
T Consensus       202 p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~--~~-~~~~~V~T~~G~-i~A~~VVvaAG~~S~~La  277 (497)
T PTZ00383        202 PNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER--SN-DSLYKIHTNRGE-IRARFVVVSACGYSLLFA  277 (497)
T ss_pred             CCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe--cC-CCeEEEEECCCE-EEeCEEEECcChhHHHHH
Confidence            877 689999999999999998    77  78899999999998  63 246788888886 999999999999999998


Q ss_pred             hhhcCC--CcceeEEEEEEEEE
Q 015072          218 KKISGL--ELPIQAVETSVCYW  237 (413)
Q Consensus       218 ~~~~g~--~~p~~~~~~~~~~~  237 (413)
                      +.. |+  ..++.|.+|+....
T Consensus       278 ~~~-Gi~~~~~i~Pv~G~~~~~  298 (497)
T PTZ00383        278 QKM-GYGLEYSCLPVAGSFYFS  298 (497)
T ss_pred             HHh-CCCCCCCEEecCceEEEc
Confidence            876 64  67889999987544

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=99.93  E-value=2.4e-24  Score=180.17  Aligned_cols=315  Identities=14%  Similarity=0.028  Sum_probs=205.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCCCCCCCCCCCCCcceeccc----CCccccchHHHHHHHH
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESSLLW   75 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g-------~~V~lvE~~~~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~~~~~~~   75 (413)
                      ..+|+|||+|+.|+++|+.+.+.+       .+|++++-....  ...+.+.+|.+++..    +.....++.......|
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e--~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l   80 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE--DTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYL   80 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc--ccccccccceeecccCCCCcHHHHHHHHHHHHHHH
Confidence            478999999999999999988843       589999766555  456677778777664    2222445666666666


Q ss_pred             HHHHHhc--CCeeE-eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecH
Q 015072           76 EQAQSEI--GYKVY-FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKP  152 (413)
Q Consensus        76 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  152 (413)
                      ..+....  +..-. .-.+......   +.+.+....+...-+.++.++..++. .+|.      .+...........++
T Consensus        81 ~~l~rs~~a~~aGV~l~sg~~ls~~---e~~~~~~~~w~diV~~fr~l~e~EL~-~f~~------~~~~G~~~Tt~~sE~  150 (342)
T KOG3923|consen   81 AHLARSEEAGEAGVCLVSGHILSDS---ESLDDQQRSWGDIVYGFRDLTERELL-GFPD------YSTYGIHFTTYLSEG  150 (342)
T ss_pred             HHHhccccccccceEEeeeeeeccC---CCchhhhhhHHhhhhhhhcCCHHHhc-CCCC------ccccceeEEEeeccc
Confidence            6665521  11111 1112222211   22233333444444556788887775 4443      222222333456677


Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEE
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVET  232 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~  232 (413)
                      ..|+.+|.+.+.++|+++. ..+|+++..  -          .+   -.+|.||+|+|.|++.|..+-     .++|.||
T Consensus       151 ~~ylpyl~k~l~e~Gvef~-~r~v~~l~E--~----------~~---~~~DVivNCtGL~a~~L~gDd-----~~yPiRG  209 (342)
T KOG3923|consen  151 PKYLPYLKKRLTENGVEFV-QRRVESLEE--V----------AR---PEYDVIVNCTGLGAGKLAGDD-----DLYPIRG  209 (342)
T ss_pred             hhhhHHHHHHHHhcCcEEE-EeeeccHHH--h----------cc---CCCcEEEECCccccccccCCc-----ceeeccc
Confidence            8999999999999999997 677877766  3          11   248999999999998876543     2999999


Q ss_pred             EEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCC
Q 015072          233 SVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAG  312 (413)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~  312 (413)
                      +++.++++=      .   ++-.+.+..+  .|++|..+  +...++.....+++.+..+.    ...++++.+.++.|.
T Consensus       210 qVl~V~ApW------v---khf~~~D~~~--ty~iP~~~--~V~lGg~~Q~g~w~~ei~~~----D~~dIl~rc~aL~P~  272 (342)
T KOG3923|consen  210 QVLKVDAPW------V---KHFIYRDFSR--TYIIPGTE--SVTLGGTKQEGNWNLEITDE----DRRDILERCCALEPS  272 (342)
T ss_pred             eEEEeeCCc------e---eEEEEecCCc--cEEecCCc--eEEEccccccCcccCcCChh----hHHHHHHHHHHhCcc
Confidence            999887332      1   1222222221  58888764  55556554444444333222    678889999999999


Q ss_pred             CCCCCCCceeeeeeeeccCCCC--e-EEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH
Q 015072          313 RVDSSGPAATQLCMYSMTPDKD--F-VIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL  374 (413)
Q Consensus       313 ~~~~~~~~~~~~g~~~~t~d~~--p-~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~  374 (413)
                      +.+. .++..|+|+||..+.-.  + ++..-+..  .-+....||||.|+++++++|-..+.++.
T Consensus       273 l~~a-~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~--~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~  334 (342)
T KOG3923|consen  273 LRHA-EIIREWVGLRPGRKQVRLEAELRTRGGKR--LTVVHNYGHGGNGFTLGWGTALEAAKLVL  334 (342)
T ss_pred             cccc-eehhhhhcccCCCCceeeeeeeecCCCcc--ceeEeeccCCCCceecccchHHHHHHHHH
Confidence            9984 78999999999877621  1 12221211  33589999999999999999988887776

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.92  E-value=4.2e-23  Score=194.16  Aligned_cols=230  Identities=17%  Similarity=0.132  Sum_probs=171.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcc-cCCCCCCCCCCCCCcceec-----ccCCcc---ccchH-----
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQ-FDFLHHRGSSHGESRTIRA-----TYPEDY---YHPMV-----   68 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~-~~~~~~~~~s~~~~~~~~~-----~~~~~~---~~~~~-----   68 (413)
                      +..+||+|||||++|+++|+.|++.  +.+|+|+|+ +..+...+..++++|..+.     .|....   ...+.     
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i   83 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEI   83 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHH
Confidence            4568999999999999999999998  899999999 5333222222444444433     444332   33344     


Q ss_pred             ----HHHHHHHHHHHHh--cC--CeeEeeeeeeeeC--CCChHHHHHHHHHHHhCCC--Ccccc-CHHHHHHhcCCcccC
Q 015072           69 ----LESSLLWEQAQSE--IG--YKVYFKAHQFDMG--PSENKSLRSVIASCRKNSV--PHQVL-DCRQVLQKYSGRIEI  135 (413)
Q Consensus        69 ----~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~--~~~~l-~~~~~~~~~p~~~~~  135 (413)
                          ..+.++|..+.+.  ++  .+++.+.+.+.+.  ..+.+.++..++.++..++  .++++ +.+++.+.+|. +..
T Consensus        84 ~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~-l~~  162 (497)
T PRK13339         84 NEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPL-MMP  162 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCc-ccC
Confidence                5667788776652  22  2346677777655  3445566777777888777  78999 79999999998 542


Q ss_pred             C----CCeEEEEecCCeeecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeE
Q 015072          136 P----ENWVGVTTELGGVIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKC  205 (413)
Q Consensus       136 ~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~v  205 (413)
                      .    ....+++.+.++.+|+..+.+.|.+.+.+ .|++++++++|++|..  .+ ++.|.+.   +.+++  +++||+|
T Consensus       163 ~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~-d~~w~v~v~~t~~g~~~~i~Ad~V  239 (497)
T PRK13339        163 GREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER--LS-DGGWEVTVKDRNTGEKREQVADYV  239 (497)
T ss_pred             CCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--CC-CCCEEEEEEecCCCceEEEEcCEE
Confidence            2    45678999999999999999999999865 4899999999999987  52 2446664   44452  5899999


Q ss_pred             EEcCCcChhhhhhhhcCCC----cceeEEEEEEEEEEe
Q 015072          206 VVTAGAWVGKLVKKISGLE----LPIQAVETSVCYWRI  239 (413)
Q Consensus       206 V~A~G~~~~~l~~~~~g~~----~p~~~~~~~~~~~~~  239 (413)
                      |+|+|+|+..+++.+ |..    .++.|++|+++.++.
T Consensus       240 V~AAGawS~~La~~~-Gi~~~~~~~i~PvkGq~l~l~~  276 (497)
T PRK13339        240 FIGAGGGAIPLLQKS-GIPESKHLGGFPISGQFLRCTN  276 (497)
T ss_pred             EECCCcchHHHHHHc-CCCccCCCceEeeeEEEEEecC
Confidence            999999999998877 653    689999999988763

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.90  E-value=7.1e-22  Score=187.55  Aligned_cols=229  Identities=17%  Similarity=0.163  Sum_probs=163.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCC-CCCCCCcceecc-----cCCc---cccchH-----
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRG-SSHGESRTIRAT-----YPED---YYHPMV-----   68 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~-~s~~~~~~~~~~-----~~~~---~~~~~~-----   68 (413)
                      +.++||+|||||++|+++|++|+++  |++|+|+||....+... .++.++|..+..     |...   ...++.     
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~   82 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKI   82 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHH
Confidence            4568999999999999999999985  78999999986543222 222455544443     2211   111221     


Q ss_pred             ----HHHHHHHHHHHHhcCC--e---eEeeeeeeeeCC--CChHHHHHHHHHHHhCCC--Cccc-cCHHHHHHhcCCccc
Q 015072           69 ----LESSLLWEQAQSEIGY--K---VYFKAHQFDMGP--SENKSLRSVIASCRKNSV--PHQV-LDCRQVLQKYSGRIE  134 (413)
Q Consensus        69 ----~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~--~~~~-l~~~~~~~~~p~~~~  134 (413)
                          ..+.++|..+.+. ++  +   ++.+.+.+.+..  .+.+.++...+.++..++  .+++ ++.+++.+.+|. +.
T Consensus        83 ~~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~-l~  160 (494)
T PRK05257         83 NEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPL-MM  160 (494)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcc-cc
Confidence                3456777666554 32  1   234666666543  234455666677777775  3566 489999999998 42


Q ss_pred             ----CCCCeEEEEecCCeeecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEe---CCcc--EEEeCe
Q 015072          135 ----IPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGE--EFWGKK  204 (413)
Q Consensus       135 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~  204 (413)
                          ......+++.+.++.+|+..+++.|.+.+++.| ++++++++|+++..  .++ +.|.+.+   .+|+  ++.|++
T Consensus       161 ~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~--~~d-g~~~v~~~~~~~G~~~~i~A~~  237 (494)
T PRK05257        161 EGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR--NDD-GSWTVTVKDLKTGEKRTVRAKF  237 (494)
T ss_pred             cCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE--CCC-CCEEEEEEEcCCCceEEEEcCE
Confidence                235677999999999999999999999999887 89999999999988  632 3355543   3353  599999


Q ss_pred             EEEcCCcChhhhhhhhcCCC----cceeEEEEEEEEEEe
Q 015072          205 CVVTAGAWVGKLVKKISGLE----LPIQAVETSVCYWRI  239 (413)
Q Consensus       205 vV~A~G~~~~~l~~~~~g~~----~p~~~~~~~~~~~~~  239 (413)
                      ||+|+|+|+..+++.. |..    .++.|++|+++..+.
T Consensus       238 VVvaAGg~s~~L~~~~-Gi~~~~~~~i~PvrGq~l~~~~  275 (494)
T PRK05257        238 VFIGAGGGALPLLQKS-GIPEAKGYGGFPVSGQFLVCEN  275 (494)
T ss_pred             EEECCCcchHHHHHHc-CCCccCCCCeeeeeEEEEEcCC
Confidence            9999999999998876 654    478999999987763

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=99.87  E-value=6.4e-20  Score=154.89  Aligned_cols=354  Identities=18%  Similarity=0.167  Sum_probs=234.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceeccc--CC-ccccchHHHHHHHHHHHH
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATY--PE-DYYHPMVLESSLLWEQAQ   79 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~   79 (413)
                      ..++|++|||||+.|++.|++|.-+  +.+|.|+|+....+ .-.|..+++.+|...  .. .--.+++-++..+.-+++
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la-~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc  124 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA-VHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC  124 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc-eeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence            3579999999999999999999887  89999999987765 345556777777643  22 223467788888888888


Q ss_pred             HhcCCeeEeeeeeeeeCCC--ChHHHHHHHHHHHhCCCC-ccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHH
Q 015072           80 SEIGYKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVP-HQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAV  156 (413)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      ++..++ +.+.|.+.+...  +...++.+.......+++ .++++..++.+..|.    -....++++|..|.+|-..+.
T Consensus       125 ~e~~Ip-yKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~----crgvkAl~sPhtGIvD~~~v~  199 (453)
T KOG2665|consen  125 DEKKIP-YKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPY----CRGVKALLSPHTGIVDWGSVT  199 (453)
T ss_pred             hhcCCC-hhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChh----hhhhhhhcCCCcceeehHHHH
Confidence            877776 466777766533  344566677666667764 689999999999887    456778999999999999999


Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCC---CcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC-c-ceeEEE
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR---GGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE-L-PIQAVE  231 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~---~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~-~-p~~~~~  231 (413)
                      ..+.+.+...|.++.++-++..+..  ....   -.+.|....+++++++.||-|+|..+..+.... |.. . -+.|.+
T Consensus       200 ls~~edF~~~gg~i~~n~~l~g~~~--n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~s-gc~~dPriVpfr  276 (453)
T KOG2665|consen  200 LSFGEDFDFMGGRIYTNFRLQGIAQ--NKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALS-GCELDPRIVPFR  276 (453)
T ss_pred             HHHHHHHHHhcccccccceeccchh--ccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHh-CCCCCCeeeecc
Confidence            9999999999999999999999988  5221   234455555778999999999999998775544 532 2 355777


Q ss_pred             EEEEEEEecC--CCcccccc--CCCCceEEecCCCeeEecCCCCCC------CeE--EEEeCCCCcCCCCC---------
Q 015072          232 TSVCYWRIKE--GDEADYAV--GGDFPSFASYGDPHVYGTPSLEYP------GLI--KIALHRGYLCDPDR---------  290 (413)
Q Consensus       232 ~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~------g~~--~~~~~~~~~~~~~~---------  290 (413)
                      |..+.+....  .....+.+  +..+|..      .+-..|+++..      +.+  .-..+...+..+..         
T Consensus       277 G~ylll~~ek~h~vk~niyPvpd~RFpfl------GvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg  350 (453)
T KOG2665|consen  277 GEYLLLKPEKLHLVKGNIYPVPDPRFPFL------GVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSG  350 (453)
T ss_pred             chhhhcChHHhccccCceeeCCCCCCccc------cccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCc
Confidence            7655443111  00111111  1111110      12333433311      111  11111111111100         


Q ss_pred             --------CCCCCCc-----chHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCC------CeEEecCCCCCCCCEEEE
Q 015072          291 --------RPWGPGP-----LLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDK------DFVIDFLGGELGEDVVVA  351 (413)
Q Consensus       291 --------~~~~~~~-----~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~------~p~ig~~~~~~~~~~~~~  351 (413)
                              .++...+     .+....+.+++++|++++. .+....+|+|+..-|+      .+++..-.....|.+...
T Consensus       351 ~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~-di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~  429 (453)
T KOG2665|consen  351 DTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDS-DIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHV  429 (453)
T ss_pred             hHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCcccccc-ccccCcccccchhccCCCCCchheEEecCccccccceEEe
Confidence                    1222221     3444457899999999984 5667789999654332      245543333335778888


Q ss_pred             eCCCccccccchHHHHHHHHHHH
Q 015072          352 GGFSGHGFKMAPVVGRILADLVL  374 (413)
Q Consensus       352 ~G~~~~G~~~a~~~a~~~a~~i~  374 (413)
                      -+--+-|.|.+.++|+++|+.++
T Consensus       430 rnapSPgaTSSlAIa~mIa~k~~  452 (453)
T KOG2665|consen  430 RNAPSPGATSSLAIAKMIADKFL  452 (453)
T ss_pred             cCCCCccchhhHHHHHHHHHHhc
Confidence            88788999999999999998875

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.81  E-value=1.2e-19  Score=163.83  Aligned_cols=340  Identities=16%  Similarity=0.153  Sum_probs=195.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceeccc--CCccc-------cchHHHHHHHH
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYY-------HPMVLESSLLW   75 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~   75 (413)
                      ..++||+|||||.+|.-+|+-.+-+|++|.|||++++.+|+  |..+...+|...  -....       .++..+++...
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT--SSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER  142 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT--SSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNER  142 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc--cccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999999999998643  333333333321  11111       12223333322


Q ss_pred             HHHHHhcC-----CeeE------eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEe
Q 015072           76 EQAQSEIG-----YKVY------FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTT  144 (413)
Q Consensus        76 ~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~  144 (413)
                      ..+.+...     +++.      ++...++...+-.    ++....+. --...++++++..+.+|- ++ .+...+...
T Consensus       143 ~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~Y----D~vAG~k~-Lk~S~~lSk~~alE~fPm-L~-~~~L~Ga~V  215 (680)
T KOG0042|consen  143 ANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIY----DLVAGSKN-LKSSYFLSKKEALEIFPM-LR-KDNLKGAMV  215 (680)
T ss_pred             HHHhhcCccccCCcceeeehhhhhhhhheeecceee----eeeccccc-cccceeecHHHHHHhCcc-cc-ccCceeEEE
Confidence            22222110     1111      1111111110000    00000000 012378899999999998 66 455556556


Q ss_pred             cCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---Ccc--EEEeCeEEEcCCcChhhhhhh
Q 015072          145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SGE--EFWGKKCVVTAGAWVGKLVKK  219 (413)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g~--~i~ad~vV~A~G~~~~~l~~~  219 (413)
                      ..+|..|..++.-.+.-.+.++|..+..+.+|.++.+  +++++...++..   .|+  +|+|+.||+|||+++..+.++
T Consensus       216 YyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llk--d~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M  293 (680)
T KOG0042|consen  216 YYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLK--DKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM  293 (680)
T ss_pred             EecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhh--CCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence            6667778888888888788889999998999999998  644333333322   233  789999999999999988776


Q ss_pred             hcCCCcc-eeEEEEEEEEEEecCCCccccccCCCCce--EEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCC
Q 015072          220 ISGLELP-IQAVETSVCYWRIKEGDEADYAVGGDFPS--FASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPG  296 (413)
Q Consensus       220 ~~g~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~  296 (413)
                      .....-| +.|.-|..+.+.  .    -+-+ ..+-.  ....+++.+|..|+..  -.+.++++..  .++.......+
T Consensus       294 dd~~~~~i~~pSsGvHIVlP--~----yY~P-~~mGlldP~TsDgRViFflPWqg--~TIaGTTD~p--t~v~~~P~PtE  362 (680)
T KOG0042|consen  294 DDEDAKPICVPSSGVHIVLP--G----YYCP-ENMGLLDPKTSDGRVIFFLPWQG--KTIAGTTDIP--TSVTHSPTPTE  362 (680)
T ss_pred             cccccCceeccCCceeEEcc--c----ccCC-cccccccCCCCCCcEEEEeccCC--ceeeccCCCC--CCCCCCCCCCH
Confidence            5222233 345556555443  1    0111 11111  1233456788888752  2344443322  22232333333


Q ss_pred             cchHHHHHHHHhhcCCCCCC--CCCceeeeeeeeccCCCCe-----------EEecCCCCCCCCEEEEeCCCccccccch
Q 015072          297 PLLDSLKELIQGRFAGRVDS--SGPAATQLCMYSMTPDKDF-----------VIDFLGGELGEDVVVAGGFSGHGFKMAP  363 (413)
Q Consensus       297 ~~~~~l~~~~~~~~p~~~~~--~~~~~~~~g~~~~t~d~~p-----------~ig~~~~~~~~~~~~~~G~~~~G~~~a~  363 (413)
                      +.++.|++.+++++.--.++  .++...|+|+||...|-.+           +|..-+    +|+..++|  | =||.=-
T Consensus       363 ~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~----~gLiTIaG--G-KWTTyR  435 (680)
T KOG0042|consen  363 DDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSP----SGLITIAG--G-KWTTYR  435 (680)
T ss_pred             HHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecC----CCeEEEec--C-cchhHH
Confidence            48999999999988544222  3567889999998766533           332222    56666664  2 244444


Q ss_pred             HHHHHHHHHH
Q 015072          364 VVGRILADLV  373 (413)
Q Consensus       364 ~~a~~~a~~i  373 (413)
                      ..|+.-.+.+
T Consensus       436 ~MAEeTVd~a  445 (680)
T KOG0042|consen  436 HMAEETVDAA  445 (680)
T ss_pred             HHHHHHHHHH
Confidence            4565554443

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.77  E-value=8.1e-17  Score=151.92  Aligned_cols=175  Identities=18%  Similarity=0.243  Sum_probs=98.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|+.|+++|++|+|+|+...++....+   ++.+.        ...   ...++..+.......
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~---gg~l~--------~~~---~e~l~~~~~~~~~~~   69 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVT---GGRLY--------AHS---LEHIIPGFADSAPVE   69 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccc---cceec--------hhh---HHHHhhhhhhcCccc
Confidence            4699999999999999999999999999999998766422111   11110        000   011122221111111


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      .......+.+.....             .....+.+..     ...           .......++...+.+.|.+.+++
T Consensus        70 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~-----~~~-----------~~~~~~~v~R~~fD~~L~~~a~~  120 (428)
T PRK10157         70 RLITHEKLAFMTEKS-------------AMTMDYCNGD-----ETS-----------PSQRSYSVLRSKFDAWLMEQAEE  120 (428)
T ss_pred             ceeeeeeEEEEcCCC-------------ceeecccccc-----ccC-----------CCCCceeeEHHHHHHHHHHHHHH
Confidence            100000010000000             0000000000     000           00112345567888889999999


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeE
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQA  229 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~  229 (413)
                      .|++++.+++|+++..  +  ++.+.+.+.++.++.|+.||.|+|.++ .+.+.+ ++..+..+
T Consensus       121 ~Gv~i~~~~~V~~i~~--~--~g~v~~v~~~g~~i~A~~VI~A~G~~s-~l~~~l-gl~~~~~~  178 (428)
T PRK10157        121 AGAQLITGIRVDNLVQ--R--DGKVVGVEADGDVIEAKTVILADGVNS-ILAEKL-GMAKRVKP  178 (428)
T ss_pred             CCCEEECCCEEEEEEE--e--CCEEEEEEcCCcEEECCEEEEEeCCCH-HHHHHc-CCCCCCCC
Confidence            9999999999999987  6  233333334555699999999999876 455555 65544444

>PRK06185 hypothetical protein; Provisional

Probab=99.75  E-value=3e-16  Score=148.26  Aligned_cols=218  Identities=12%  Similarity=0.048  Sum_probs=121.1

Q ss_pred             ecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCc--EEEEeCCcc-EEEeCeEEEcCCcChhhhhhhhcCCCc
Q 015072          150 IKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGG--VTVVTSSGE-EFWGKKCVVTAGAWVGKLVKKISGLEL  225 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~-~i~ad~vV~A~G~~~~~l~~~~~g~~~  225 (413)
                      +....+.+.|.+.+.+. |++++++++|+++..  +++ ..  +.+.+.+|+ +++||.||.|+|.++. +.+.+ ++..
T Consensus       105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~--~~~-~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~-gi~~  179 (407)
T PRK06185        105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE--EGG-RVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALA-GLEV  179 (407)
T ss_pred             eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE--eCC-EEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHc-CCCc
Confidence            44467778888877664 899999999999988  632 22  344455664 7999999999999985 54544 7766


Q ss_pred             ceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHH
Q 015072          226 PIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKEL  305 (413)
Q Consensus       226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  305 (413)
                      +..++.+.++.+.++....  ... ..+..  ...+..+.+.|..   +.+.+...    .++...........+.+.+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~--~~~~g~~~llP~~---~~~~i~~~----~~~~~~~~~~~~~~~~~~~~  247 (407)
T PRK06185        180 REFGAPMDVLWFRLPREPD--DPE-SLMGR--FGPGQGLIMIDRG---DYWQCGYV----IPKGGYAALRAAGLEAFRER  247 (407)
T ss_pred             cccCCCceeEEEecCCCCC--CCc-ccceE--ecCCcEEEEEcCC---CeEEEEEE----ecCCCchhhhhhhHHHHHHH
Confidence            6667777766665443211  000 01111  1223345566653   32322221    11111111111145667777


Q ss_pred             HHhhcCCCCCCCCCceeeee--e--------eeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH-
Q 015072          306 IQGRFAGRVDSSGPAATQLC--M--------YSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL-  374 (413)
Q Consensus       306 ~~~~~p~~~~~~~~~~~~~g--~--------~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~-  374 (413)
                      +.+.+|.+.+....+..|..  .        ..+..++..++|       +-......++|+|+.+|.--|..+++.+. 
T Consensus       248 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvG-------DAAh~~~P~~GqG~nlgl~Da~~La~~l~~  320 (407)
T PRK06185        248 VAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIG-------DAAHAMSPVGGVGINLAIQDAVAAANILAE  320 (407)
T ss_pred             HHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEe-------ccccccCcccccchhHHHHHHHHHHHHHHH
Confidence            77777775421011111111  1        123446666777       44556666789999999966666666654 


Q ss_pred             ---cCCCCcccccccccccc
Q 015072          375 ---SGEAQGVELRHFRIARF  391 (413)
Q Consensus       375 ---~~~~~~~~~~~~~~~R~  391 (413)
                         .+......++.|.-.|.
T Consensus       321 ~~~~~~~~~~~L~~Y~~~R~  340 (407)
T PRK06185        321 PLRRGRVSDRDLAAVQRRRE  340 (407)
T ss_pred             HhccCCccHHHHHHHHHHhh
Confidence               23221234566665553

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.71  E-value=2e-15  Score=141.83  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCccee
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQ  228 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~  228 (413)
                      .++...+.+.|.+.+.+.|++++++++|+++..  +  ++.+.+++++|+++++|.||.|+|.++ .+.+.+ ++..+..
T Consensus       109 ~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~-g~~~~~~  182 (392)
T PRK08773        109 IVENDLLVDRLWAALHAAGVQLHCPARVVALEQ--D--ADRVRLRLDDGRRLEAALAIAADGAAS-TLRELA-GLPVSRH  182 (392)
T ss_pred             EEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEe--c--CCeEEEEECCCCEEEeCEEEEecCCCc-hHHHhh-cCCceEE
Confidence            456678889999999889999999999999988  6  456778777888899999999999998 455544 6655543


Q ss_pred             EE
Q 015072          229 AV  230 (413)
Q Consensus       229 ~~  230 (413)
                      .+
T Consensus       183 ~~  184 (392)
T PRK08773        183 DY  184 (392)
T ss_pred             Ee
Confidence            33

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.70  E-value=6e-15  Score=138.12  Aligned_cols=288  Identities=20%  Similarity=0.215  Sum_probs=149.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC--
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG--   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   83 (413)
                      ++|||+|||||++|+++|+.|+++|.+|+|+|+....+....+.   +.+...               .++++.....  
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~---~~~~~~---------------~l~~l~~~~~~~   63 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCG---GGLSPR---------------ALEELIPDFDEE   63 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcccc---ceechh---------------hHHHhCCCcchh
Confidence            36999999999999999999999999999999988775433321   111100               0000000000  


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEe--cCCeeecHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTT--ELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~  161 (413)
                      +........++.                                        +.....+..  .....++...+.++|.+
T Consensus        64 i~~~v~~~~~~~----------------------------------------~~~~~~~~~~~~~~y~v~R~~fd~~La~  103 (396)
T COG0644          64 IERKVTGARIYF----------------------------------------PGEKVAIEVPVGEGYIVDRAKFDKWLAE  103 (396)
T ss_pred             hheeeeeeEEEe----------------------------------------cCCceEEecCCCceEEEEhHHhhHHHHH
Confidence            000000000000                                        000001111  33567788999999999


Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEE---EEEE
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSV---CYWR  238 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~---~~~~  238 (413)
                      .+++.|++++.+++|+++..  +++ +.+.....++.+++|+.||.|+|..+ .+.+.+ +.. ...+....+   -.+.
T Consensus       104 ~A~~aGae~~~~~~~~~~~~--~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s-~l~~~l-g~~-~~~~~~~~~~~~e~~~  177 (396)
T COG0644         104 RAEEAGAELYPGTRVTGVIR--EDD-GVVVGVRAGDDEVRAKVVIDADGVNS-ALARKL-GLK-DRKPEDYAIGVKEVIE  177 (396)
T ss_pred             HHHHcCCEEEeceEEEEEEE--eCC-cEEEEEEcCCEEEEcCEEEECCCcch-HHHHHh-CCC-CCChhheeEEeEEEEe
Confidence            99999999999999999998  632 32333333335699999999999866 455555 544 222222222   2222


Q ss_pred             ecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCC--
Q 015072          239 IKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDS--  316 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~--  316 (413)
                      ++. .......  ..-.+......+.++.|..+  +.+.+|....... +....     .. ...+.+.+..+.....  
T Consensus       178 ~~~-~~~~~~~--~~~~~~~~~~Gy~wifP~~~--~~~~VG~g~~~~~-~~~~~-----~~-~~l~~f~~~~~~~~~~~~  245 (396)
T COG0644         178 VPD-DGDVEEF--LYGPLDVGPGGYGWIFPLGD--GHANVGIGVLLDD-PSLSP-----FL-ELLERFKEHPAIRKLLLG  245 (396)
T ss_pred             cCC-CCceEEE--EecCCccCCCceEEEEECCC--ceEEEEEEEecCC-cCCCc-----hH-HHHHHHHhCcccchhccC
Confidence            220 0000000  00000112233566677654  4333332110111 11111     22 2323333322211100  


Q ss_pred             CCCceeeeeeeecc-C-------CCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072          317 SGPAATQLCMYSMT-P-------DKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG  376 (413)
Q Consensus       317 ~~~~~~~~g~~~~t-~-------d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~  376 (413)
                      .......++..|.. +       |+..+||       +..-+...+.|.|+..|..+|+++|+.|.+.
T Consensus       246 ~~~~~~~~~~ip~~g~~~~~~~~~~~~lvG-------DAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~  306 (396)
T COG0644         246 GKILEYAAGGIPEGGPASRPLVGDGVLLVG-------DAAGFVNPLTGEGIRYAIKSGKLAAEAIAEA  306 (396)
T ss_pred             CceEEEeeeecccCCcCCCccccCCEEEEe-------ccccCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence            12344444554442 2       3333444       2233455567889999999999999999854

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.69  E-value=5.7e-15  Score=138.71  Aligned_cols=176  Identities=15%  Similarity=0.132  Sum_probs=103.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHH--HhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQ--SEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   83 (413)
                      +++||+|||||++|+++|+.|++.|++|+|+|+.+.....+....           .+...+...+.+.++.+-  +...
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~-----------~r~~~l~~~~~~~l~~~g~~~~~~   72 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWD-----------SRVYAISPSSQAFLERLGVWQALD   72 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCC-----------CceEeecHHHHHHHHHcCchhhhh
Confidence            358999999999999999999999999999999866432111100           111223333444443320  0000


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      .....+...+.+....              .   ..+.........|              .....++...+.+.|.+.+
T Consensus        73 ~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~~--------------~~~~~i~~~~l~~~L~~~~  121 (388)
T PRK07608         73 AARLAPVYDMRVFGDA--------------H---ARLHFSAYQAGVP--------------QLAWIVESSLIERALWAAL  121 (388)
T ss_pred             hhcCCcceEEEEEECC--------------C---ceeEeeccccCCC--------------CCEEEEEhHHHHHHHHHHH
Confidence            0000000111110000              0   0000000000000              1124466788899999998


Q ss_pred             HHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEE
Q 015072          164 IKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAV  230 (413)
Q Consensus       164 ~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~  230 (413)
                      .+.| ++++ ++.|+++..  +  ++.+.+++.+|++++||.||.|+|.++. +.+.+ +...+..+.
T Consensus       122 ~~~~~v~~~-~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~~-~~~~~~~~~  182 (388)
T PRK07608        122 RFQPNLTWF-PARAQGLEV--D--PDAATLTLADGQVLRADLVVGADGAHSW-VRSQA-GIKAERRPY  182 (388)
T ss_pred             HhCCCcEEE-cceeEEEEe--c--CCeEEEEECCCCEEEeeEEEEeCCCCch-HHHhc-CCCcccccc
Confidence            8887 9998 889999987  6  4567788888877999999999999985 54444 665555554

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.69  E-value=1.7e-14  Score=130.30  Aligned_cols=198  Identities=17%  Similarity=0.143  Sum_probs=106.0

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-CccEEEeCeEEEcCCcChhhhhhhhcCCCc-
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-SGEEFWGKKCVVTAGAWVGKLVKKISGLEL-  225 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~-  225 (413)
                      ..++...+.+.|.+.+.+.|++++++++|+++..  +  ++.+.+... ++.++++|.||+|+|.++. +.+.+ +... 
T Consensus        86 ~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~--~--~~~~~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~~-~~~~~  159 (295)
T TIGR02032        86 YVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEI--H--DDRVVVIVRGGEGTVTAKIVIGADGSRSI-VAKKL-GLRKE  159 (295)
T ss_pred             EEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEE--e--CCEEEEEEcCccEEEEeCEEEECCCcchH-HHHhc-CCCCC
Confidence            4566778889999999999999999999999988  6  344444433 3447999999999999874 54544 4322 


Q ss_pred             ceeEEEEEEEEEEecCCCccccccCCCCceEEec---CCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHH
Q 015072          226 PIQAVETSVCYWRIKEGDEADYAVGGDFPSFASY---GDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSL  302 (413)
Q Consensus       226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (413)
                      +.....+....+..+...   ... .....+...   .+...|..|..+  +.+.++.......    .   ..+..+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~P~~~--~~~~v~~~~~~~~----~---~~~~~~~~  226 (295)
T TIGR02032       160 PRELGVAARAEVEMPDEE---VDE-DFVEVYIDRGISPGGYGWVFPKGD--GTANVGVGSRSAE----E---GEDLKKYL  226 (295)
T ss_pred             CcceeeEEEEEEecCCcc---cCc-ceEEEEcCCCcCCCceEEEEeCCC--CeEEEeeeeccCC----C---CCCHHHHH
Confidence            112222222233322110   000 001111111   234577777643  4333322110000    0   11133444


Q ss_pred             HHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeC-------CCccccccchHHHHHHHHHH
Q 015072          303 KELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGG-------FSGHGFKMAPVVGRILADLV  373 (413)
Q Consensus       303 ~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G-------~~~~G~~~a~~~a~~~a~~i  373 (413)
                      .+ +.+.+|.+.+. .....+.+..++.....+..       .+++++++-       +.|.|+.+|...|.++|+.|
T Consensus       227 ~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-------~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       227 KD-FLARRPELKDA-ETVEVIGAPIPIGRPDDKTV-------RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             HH-HHHhCcccccC-cEEeeeceeeccCCCCCccc-------cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence            44 44556766542 33444555555432211111       144444333       67899999999999888753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.68  E-value=5.5e-15  Score=138.48  Aligned_cols=220  Identities=11%  Similarity=0.036  Sum_probs=114.5

Q ss_pred             eecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072          149 VIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI  227 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~  227 (413)
                      .++...+.+.|.+.+.+ .|++++++++|+++..  +  ++.+.+.+++|+++.||.||.|+|.++. +.+.+ +...+.
T Consensus       101 ~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l-~~~~~~  174 (382)
T TIGR01984       101 VVELADLGQALLSRLALLTNIQLYCPARYKEIIR--N--QDYVRVTLDNGQQLRAKLLIAADGANSK-VRELL-SIPTEE  174 (382)
T ss_pred             EEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--c--CCeEEEEECCCCEEEeeEEEEecCCChH-HHHHc-CCCCcc
Confidence            45678899999999887 4999999999999988  6  4567788888888999999999999875 54554 544443


Q ss_pred             eEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHH
Q 015072          228 QAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQ  307 (413)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  307 (413)
                      .......+...+......     ..........+..+++.|..+.. .+...............+.    ..+.+.+.+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  244 (382)
T TIGR01984       175 HDYNQTALIANIRHEQPH-----QGCAFERFTPHGPLALLPLKDNY-RSSLVWCLPSKQADTIANL----PDAEFLAELQ  244 (382)
T ss_pred             cccCCEEEEEEEEecCCC-----CCEEEEeeCCCCCeEECcCCCCC-CEEEEEECCHHHHHHHHcC----CHHHHHHHHH
Confidence            322222332222211110     00111111223346667764421 2222111100000000011    1122233333


Q ss_pred             hhcCCC-CCC--CCCceeee----eeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCC---
Q 015072          308 GRFAGR-VDS--SGPAATQL----CMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGE---  377 (413)
Q Consensus       308 ~~~p~~-~~~--~~~~~~~~----g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~---  377 (413)
                      +.++.. .+.  ......|.    ....+..++..++|       +-.+...-++|.|+.+|.--|..+++.|....   
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvG-------DAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~  317 (382)
T TIGR01984       245 QAFGWRLGKITQVGERKTYPLKLRIAETHVHPRVVLIG-------NAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDL  317 (382)
T ss_pred             HHHhhhccCeEEcCCccEeecchhhhhheecCCEEEEe-------ecccccCCccccchhhhHHHHHHHHHHHHHhccCc
Confidence            333321 110  00111110    01112223444455       44555666889999999999999998886421   


Q ss_pred             CCcccccccccccc
Q 015072          378 AQGVELRHFRIARF  391 (413)
Q Consensus       378 ~~~~~~~~~~~~R~  391 (413)
                      .....++.|.-.|.
T Consensus       318 ~~~~~l~~Y~~~r~  331 (382)
T TIGR01984       318 GTYALLQEYLRRRQ  331 (382)
T ss_pred             cCHHHHHHHHHHHH
Confidence            11234666666663

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.68  E-value=8e-16  Score=136.00  Aligned_cols=167  Identities=22%  Similarity=0.204  Sum_probs=107.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      +.+||+|||||.+|+++|..++++|++|+|+|+.+..|....-.+.+++.......             ++++....+- 
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-------------~~~~ls~~p~-   67 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-------------PDEFLSRNPG-   67 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-------------HHHHHHhCCC-
Confidence            36899999999999999999999999999999998776544333333332211110             1122111110 


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                          .+.+....-..-.-++++.+.+.+|++...-+   .-+.||.                 ......+++.|.+.+++
T Consensus        68 ----~~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~---~Gr~Fp~-----------------sdkA~~Iv~~ll~~~~~  123 (408)
T COG2081          68 ----NGHFLKSALARFTPEDFIDWVEGLGIALKEED---LGRMFPD-----------------SDKASPIVDALLKELEA  123 (408)
T ss_pred             ----cchHHHHHHHhCCHHHHHHHHHhcCCeeEEcc---CceecCC-----------------ccchHHHHHHHHHHHHH
Confidence                00000000000011345555566665432222   1123332                 01236889999999999


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .||+++++++|.++..  +  +....+.+++|++++||.+|+|+|..|-
T Consensus       124 ~gV~i~~~~~v~~v~~--~--~~~f~l~t~~g~~i~~d~lilAtGG~S~  168 (408)
T COG2081         124 LGVTIRTRSRVSSVEK--D--DSGFRLDTSSGETVKCDSLILATGGKSW  168 (408)
T ss_pred             cCcEEEecceEEeEEe--c--CceEEEEcCCCCEEEccEEEEecCCcCC
Confidence            9999999999999999  7  4678899999978999999999996654

>PRK06834 hypothetical protein; Provisional

Probab=99.68  E-value=3.3e-14  Score=136.12  Aligned_cols=72  Identities=19%  Similarity=0.202  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEE
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAV  230 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~  230 (413)
                      ..+.+.|.+.+++.|++++++++|++++.  +  ++.+.+++.+|+++++|+||.|+|.++. +.+.+ |+..+-...
T Consensus       100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~--~--~~~v~v~~~~g~~i~a~~vVgADG~~S~-vR~~l-gi~~~g~~~  171 (488)
T PRK06834        100 NHIERILAEWVGELGVPIYRGREVTGFAQ--D--DTGVDVELSDGRTLRAQYLVGCDGGRSL-VRKAA-GIDFPGWDP  171 (488)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCCCC-cHhhc-CCCCCCCCc
Confidence            45677788888888999999999999998  7  4567777777778999999999999984 44444 766554433

>PRK06847 hypothetical protein; Provisional

Probab=99.68  E-value=3.2e-14  Score=133.01  Aligned_cols=63  Identities=27%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..++...+.+.|.+.+.+.|++++++++|+++..  +  ++.+.+.+.+|+++.+|.||.|+|.++.
T Consensus       102 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vI~AdG~~s~  164 (375)
T PRK06847        102 GGIMRPALARILADAARAAGADVRLGTTVTAIEQ--D--DDGVTVTFSDGTTGRYDLVVGADGLYSK  164 (375)
T ss_pred             ccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEE--c--CCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence            3456678888999988888999999999999988  6  4567788888888999999999999885

>PRK08244 hypothetical protein; Provisional

Probab=99.67  E-value=6.3e-14  Score=135.36  Aligned_cols=214  Identities=15%  Similarity=0.130  Sum_probs=110.2

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE--eCCc-cEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--TSSG-EEFWGKKCVVTAGAWVGKLVKKISGLELPI  227 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~~~g-~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~  227 (413)
                      .-..+.+.|.+.+.+.|++++++++|+++..  +  ++.+.++  ..+| +++++|+||.|+|.++. +.+.+ ++..+-
T Consensus        98 ~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~-vR~~l-gi~~~g  171 (493)
T PRK08244         98 PQAETEKVLEEHARSLGVEIFRGAEVLAVRQ--D--GDGVEVVVRGPDGLRTLTSSYVVGADGAGSI-VRKQA-GIAFPG  171 (493)
T ss_pred             cHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE--c--CCeEEEEEEeCCccEEEEeCEEEECCCCChH-HHHhc-CCCccC
Confidence            3356677777888888999999999999988  6  3445443  3355 36999999999999884 43433 544322


Q ss_pred             eE--EEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHH
Q 015072          228 QA--VETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKEL  305 (413)
Q Consensus       228 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  305 (413)
                      ..  ....+..+.......      .....+. ..+..+++.|..+  +.+.+.............   .....+++.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~g~~~~~P~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  239 (493)
T PRK08244        172 TDATFTAMLGDVVLKDPPP------SSVLSLC-TREGGVMIVPLSG--GIYRVLIIDPERPQVPKD---EPVTLEELKTS  239 (493)
T ss_pred             CCcceEEEEEEEEecCCCC------cceeEEE-eCCceEEEEECCC--CeEEEEEEcCCcccccCC---CCCCHHHHHHH
Confidence            11  222222222211110      0011111 2233466667643  433222211000000000   00135566666


Q ss_pred             HHhhcCCCCCCCCCceeeeeee--------eccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH---
Q 015072          306 IQGRFAGRVDSSGPAATQLCMY--------SMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL---  374 (413)
Q Consensus       306 ~~~~~p~~~~~~~~~~~~~g~~--------~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~---  374 (413)
                      +.+.++.....  ....|...+        .+..++..++|       +-.+...-++|+|+.+|..-|..|+..+.   
T Consensus       240 l~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~gRv~L~G-------DAAH~~~P~~GqG~n~gi~DA~~La~~La~~l  310 (493)
T PRK08244        240 LIRICGTDFGL--NDPVWMSRFGNATRQAERYRSGRIFLAG-------DAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAI  310 (493)
T ss_pred             HHHhhCCCCCc--CCeeEEEecccceeeHhhhccCcEEEee-------cceeccCCccccccccchhhHHHHHHHHHHHH
Confidence            66666532211  111122111        23344556666       45566666788888888777755544432   


Q ss_pred             cCCCCcccccccccccc
Q 015072          375 SGEAQGVELRHFRIARF  391 (413)
Q Consensus       375 ~~~~~~~~~~~~~~~R~  391 (413)
                      .|...+..++.|.-.|.
T Consensus       311 ~g~~~~~lL~~Ye~eR~  327 (493)
T PRK08244        311 KGWAPDWLLDSYHAERH  327 (493)
T ss_pred             cCCCCchhhhhhHHHHH
Confidence            24443445677766663

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.67  E-value=2.4e-15  Score=141.18  Aligned_cols=72  Identities=15%  Similarity=0.105  Sum_probs=54.1

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELP  226 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p  226 (413)
                      .++...+.+.|.+.+.+.+...+++++|+++..  +  ++.+.+++++|+++++|.||.|+|.++. +.+.+ ++...
T Consensus       107 ~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-g~~~~  178 (388)
T PRK07494        107 NIPNWLLNRALEARVAELPNITRFGDEAESVRP--R--EDEVTVTLADGTTLSARLVVGADGRNSP-VREAA-GIGVR  178 (388)
T ss_pred             EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEE--c--CCeEEEEECCCCEEEEeEEEEecCCCch-hHHhc-CCCce
Confidence            455577888888888776533377999999988  6  4567788888888999999999999884 54444 54433

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.66  E-value=3.1e-14  Score=134.33  Aligned_cols=81  Identities=9%  Similarity=0.049  Sum_probs=60.4

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCccee
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQ  228 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~  228 (413)
                      .++...+.+.|.+.+.+.|++++.+++|++++.  +  ++.+.|++.+|+++.||.||.|+|.++. +.+.+ +...+..
T Consensus       108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vVgAdG~~S~-vR~~l-g~~~~~~  181 (405)
T PRK05714        108 IVENRVVQDALLERLHDSDIGLLANARLEQMRR--S--GDDWLLTLADGRQLRAPLVVAADGANSA-VRRLA-GCATREW  181 (405)
T ss_pred             EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCCch-hHHhc-CCCcccc
Confidence            455567777888888888999999999999988  6  4567788888888999999999999984 54444 6544443


Q ss_pred             EEEEEEE
Q 015072          229 AVETSVC  235 (413)
Q Consensus       229 ~~~~~~~  235 (413)
                      .+....+
T Consensus       182 ~~~~~~~  188 (405)
T PRK05714        182 DYLHHAI  188 (405)
T ss_pred             cCCceEE
Confidence            3333333

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.66  E-value=1.9e-14  Score=135.12  Aligned_cols=70  Identities=13%  Similarity=0.103  Sum_probs=56.5

Q ss_pred             eecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072          149 VIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE  224 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~  224 (413)
                      .++...+.+.|.+.+.+.| ++++++++|+++..  +  ++.+.+++++|+++.+|.||.|+|.++. +.+.+ +..
T Consensus       102 ~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~~~~vi~adG~~S~-vr~~l-~~~  172 (385)
T TIGR01988       102 VVENRVLQQALWERLQEYPNVTLLCPARVVELPR--H--SDHVELTLDDGQQLRARLLVGADGANSK-VRQLA-GIP  172 (385)
T ss_pred             EEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe--c--CCeeEEEECCCCEEEeeEEEEeCCCCCH-HHHHc-CCC
Confidence            4556788899999988887 99999999999988  6  4567788888888999999999999874 44444 443

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.65  E-value=1.6e-14  Score=136.33  Aligned_cols=72  Identities=24%  Similarity=0.261  Sum_probs=58.9

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCc
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLEL  225 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~  225 (413)
                      ..++...+.+.|.+.+.+.|++++++++|+++..  +  ++.+.+++++|+++.+|.||.|+|.++. +.+.+ ++..
T Consensus       106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~-g~~~  177 (403)
T PRK07333        106 HMVENRVLINALRKRAEALGIDLREATSVTDFET--R--DEGVTVTLSDGSVLEARLLVAADGARSK-LRELA-GIKT  177 (403)
T ss_pred             EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--c--CCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHc-CCCc
Confidence            3567788999999999888999999999999988  6  4567788888888999999999999885 54444 5543

>PLN02697 lycopene epsilon cyclase

Probab=99.65  E-value=3.3e-14  Score=135.53  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=62.1

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhh-cCCCcc
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKI-SGLELP  226 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~-~g~~~p  226 (413)
                      .++...+.+.|.+.+.+.|+++ .+++|++|..  +  ++.+. +.+.+|.++.|+.||.|+|.++..++... .+...+
T Consensus       188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~--~--~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~  262 (529)
T PLN02697        188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITE--A--SDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVC  262 (529)
T ss_pred             EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEE--c--CCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcc
Confidence            5777889999999998899998 4789999987  6  33433 34567778999999999999996554321 122345


Q ss_pred             eeEEEEEEEEEE
Q 015072          227 IQAVETSVCYWR  238 (413)
Q Consensus       227 ~~~~~~~~~~~~  238 (413)
                      .+...|..+.+.
T Consensus       263 ~Q~a~Gi~ve~~  274 (529)
T PLN02697        263 VQTAYGVEVEVE  274 (529)
T ss_pred             cEEEEEEEEEec
Confidence            677777776554

>PRK06184 hypothetical protein; Provisional

Probab=99.65  E-value=4e-14  Score=136.98  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe---CCccEEEeCeEEEcCCcChhhhhhhhcCCCc
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGEEFWGKKCVVTAGAWVGKLVKKISGLEL  225 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~  225 (413)
                      ..+.+.|.+.+.+.|++++++++|++++.  +  .+.+.+..   .++++++||+||.|+|++|. +.+.+ ++..
T Consensus       109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~--~--~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~-vR~~l-gi~~  178 (502)
T PRK06184        109 WRTERILRERLAELGHRVEFGCELVGFEQ--D--ADGVTARVAGPAGEETVRARYLVGADGGRSF-VRKAL-GIGF  178 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCcEEEEEEE--c--CCcEEEEEEeCCCeEEEEeCEEEECCCCchH-HHHhC-CCCc
Confidence            45667788888888999999999999988  6  34555554   55568999999999999984 44444 5443

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.65  E-value=5.8e-14  Score=132.25  Aligned_cols=78  Identities=22%  Similarity=0.292  Sum_probs=56.9

Q ss_pred             cHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeE
Q 015072          151 KPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQA  229 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~  229 (413)
                      +...+.+.|.+.+.+ .|++++++++|+++..  +  ++.+.++++++.++.+|.||.|+|.++. +.+.+ +...+..+
T Consensus       110 ~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-~~~~~~~~  183 (395)
T PRK05732        110 ELHDVGQRLFALLDKAPGVTLHCPARVANVER--T--QGSVRVTLDDGETLTGRLLVAADGSHSA-LREAL-GIDWQQHP  183 (395)
T ss_pred             EhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCChh-hHHhh-CCCcccee
Confidence            334566677776655 4799999999999987  6  4567788888878999999999999985 55555 65555555


Q ss_pred             EEEEE
Q 015072          230 VETSV  234 (413)
Q Consensus       230 ~~~~~  234 (413)
                      ....+
T Consensus       184 ~~~~~  188 (395)
T PRK05732        184 YEQVA  188 (395)
T ss_pred             cCCEE
Confidence            43333

>PRK07190 hypothetical protein; Provisional

Probab=99.64  E-value=1.1e-13  Score=132.36  Aligned_cols=69  Identities=16%  Similarity=0.242  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI  227 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~  227 (413)
                      ..+.+.|.+.+.+.|++++++++|+++..  +  ++++.+.+.+|++++|++||.|+|..+. +.+.+ |+..+-
T Consensus       109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~--~--~~~v~v~~~~g~~v~a~~vVgADG~~S~-vR~~l-gi~f~g  177 (487)
T PRK07190        109 SYVEKLLDDKLKEAGAAVKRNTSVVNIEL--N--QAGCLTTLSNGERIQSRYVIGADGSRSF-VRNHF-NVPFEI  177 (487)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--c--CCeeEEEECCCcEEEeCEEEECCCCCHH-HHHHc-CCCccc
Confidence            34566777778888999999999999998  6  4556666677778999999999999773 43433 655443

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.64  E-value=3.5e-14  Score=133.69  Aligned_cols=62  Identities=21%  Similarity=0.251  Sum_probs=52.1

Q ss_pred             eecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          149 VIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .++...+.+.|.+.+.+.+ ++++++++|+++..  +  ++.+.+.+.+|+++.+|.||.|+|.++.
T Consensus       105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ--D--GDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec--C--CCceEEEEcCCCEEecCEEEECCCcChH
Confidence            4566778888888887764 89999999999988  6  4567788888888999999999999986

>PRK10015 oxidoreductase; Provisional

Probab=99.63  E-value=4e-14  Score=133.52  Aligned_cols=69  Identities=14%  Similarity=0.203  Sum_probs=51.0

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhhcCC
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKISGL  223 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~  223 (413)
                      ..+....+-+.|.+.+++.|++++.+++|+++..  +  ++.+. +.+ ++.++.|+.||.|+|..+ .+.+.+ +.
T Consensus       103 ~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~--~--~~~v~~v~~-~~~~i~A~~VI~AdG~~s-~v~~~l-g~  172 (429)
T PRK10015        103 YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR--E--GNKVTGVQA-GDDILEANVVILADGVNS-MLGRSL-GM  172 (429)
T ss_pred             eEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE--e--CCEEEEEEe-CCeEEECCEEEEccCcch-hhhccc-CC
Confidence            3455577888898999999999999999999987  6  23343 444 344699999999999866 344444 44

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.62  E-value=2.7e-14  Score=133.51  Aligned_cols=217  Identities=16%  Similarity=0.119  Sum_probs=115.6

Q ss_pred             eecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeC-CccEEEeCeEEEcCCcChhhhhhhhcC-CCc
Q 015072          149 VIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTS-SGEEFWGKKCVVTAGAWVGKLVKKISG-LEL  225 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~~i~ad~vV~A~G~~~~~l~~~~~g-~~~  225 (413)
                      .+.-..+.+.|.+.+.+.+ ++++.+++|+.+..  +  ++.+.++.+ +|++++||.||-|.|.+|. +.+.+ + ...
T Consensus       100 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~--~--~~~v~v~l~~dG~~~~a~llVgADG~~S~-vR~~~-~~~~~  173 (387)
T COG0654         100 VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ--D--GDGVTVTLSFDGETLDADLLVGADGANSA-VRRAA-GIAEF  173 (387)
T ss_pred             EeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE--c--CCceEEEEcCCCcEEecCEEEECCCCchH-HHHhc-CCCCc
Confidence            3444678888888888766 99999999999999  7  345567666 8889999999999999884 33333 5 122


Q ss_pred             ceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHH
Q 015072          226 PIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKEL  305 (413)
Q Consensus       226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  305 (413)
                      .-..+....+...+....+.     .............+.+.|..+....+.....      +...+.......+.+...
T Consensus       174 ~~~~y~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  242 (387)
T COG0654         174 SGRDYGQTALVANVEPEEPH-----EGRAGERFTHAGPFALLPLPDNRSSVVWSLP------PGPAEDLQGLSDEEFLRE  242 (387)
T ss_pred             cCCCCCceEEEEEeecCCCC-----CCeEEEEecCCCceEEEecCCCceeEEEECC------hhhHHHHhcCCHHHHHHH
Confidence            22233333333333332110     1011111112222445555432222222211      111111111134445566


Q ss_pred             HHhhcCCC--CCCCCCceeeeee--------eeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072          306 IQGRFAGR--VDSSGPAATQLCM--------YSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS  375 (413)
Q Consensus       306 ~~~~~p~~--~~~~~~~~~~~g~--------~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~  375 (413)
                      +.+.+|..  ....... .+.-.        ..+..++.-++|       +-.+...-.+|+|+.+|.--+..|++.|..
T Consensus       243 l~~~~~~~~~~~~~~~~-~~~~~~pl~~~~a~~~~~~Rv~LiG-------DAAH~~~P~~gQG~nlgl~Da~~La~~L~~  314 (387)
T COG0654         243 LQRRLGERDPLGRVTLV-SSRSAFPLSLRVAERYRRGRVVLIG-------DAAHAMHPLAGQGANLALEDAAALAEALAA  314 (387)
T ss_pred             HHHhcCcccccceEEEc-cccccccccchhhhheecCcEEEEe-------eccccCCCccccchhhhhhhHHHHHHHHHH
Confidence            77777766  3210000 11111        122335556666       445555667889999988877777777764


Q ss_pred             CCCC---ccccccccccc
Q 015072          376 GEAQ---GVELRHFRIAR  390 (413)
Q Consensus       376 ~~~~---~~~~~~~~~~R  390 (413)
                      ....   ...++.|.-.|
T Consensus       315 ~~~~~~~~~~L~~Y~~~R  332 (387)
T COG0654         315 APRPGADAAALAAYEARR  332 (387)
T ss_pred             HhhcCccHHHHHHHHHhh
Confidence            3221   23466666555

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.60  E-value=2e-13  Score=129.36  Aligned_cols=65  Identities=17%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeC--Cc-cEEEeCeEEEcCCcChhhhhhhhcCC
Q 015072          153 TKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTS--SG-EEFWGKKCVVTAGAWVGKLVKKISGL  223 (413)
Q Consensus       153 ~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g-~~i~ad~vV~A~G~~~~~l~~~~~g~  223 (413)
                      ..+.+.|.+.+.+. |++++++++|++++.  +  ++.+.|+..  ++ .+++||.||.|+|.++. +.+.+ +.
T Consensus       121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~--~--~~~~~v~~~~~~~~~~i~adlvIgADG~~S~-vR~~~-~~  189 (415)
T PRK07364        121 QVLLEALQEFLQSCPNITWLCPAEVVSVEY--Q--QDAATVTLEIEGKQQTLQSKLVVAADGARSP-IRQAA-GI  189 (415)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--c--CCeeEEEEccCCcceEEeeeEEEEeCCCCch-hHHHh-CC
Confidence            45777777777664 799999999999988  6  345556554  22 36999999999999884 43433 44

>PRK08013 oxidoreductase; Provisional

Probab=99.60  E-value=2.3e-13  Score=127.96  Aligned_cols=72  Identities=17%  Similarity=0.113  Sum_probs=55.8

Q ss_pred             eecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072          149 VIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELP  226 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p  226 (413)
                      .+.-..+.+.|.+.+.+. |++++++++|++++.  +  +..+.++..+|++++||.||.|.|.+|. +.+.+ ++..+
T Consensus       107 ~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~a~lvVgADG~~S~-vR~~~-~~~~~  179 (400)
T PRK08013        107 IIENSVIHYALWQKAQQSSDITLLAPAELQQVAW--G--ENEAFLTLKDGSMLTARLVVGADGANSW-LRNKA-DIPLT  179 (400)
T ss_pred             EEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--c--CCeEEEEEcCCCEEEeeEEEEeCCCCcH-HHHHc-CCCcc
Confidence            455567888888888775 799999999999988  6  4567777788888999999999999884 43443 55443

>PRK06126 hypothetical protein; Provisional

Probab=99.60  E-value=4.1e-13  Score=131.43  Aligned_cols=68  Identities=21%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             cHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEe---CCcc--EEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072          151 KPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGE--EFWGKKCVVTAGAWVGKLVKKISGLE  224 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~vV~A~G~~~~~l~~~~~g~~  224 (413)
                      +-..+.+.|.+.+.+. +++++++++|+++..  +  .+.+.+..   .+|+  ++++|+||.|+|+++. +.+.+ ++.
T Consensus       124 ~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~l-gi~  197 (545)
T PRK06126        124 PQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ--D--ADGVTATVEDLDGGESLTIRADYLVGCDGARSA-VRRSL-GIS  197 (545)
T ss_pred             CHHHHHHHHHHHHHhCCCceEEeccEEEEEEE--C--CCeEEEEEEECCCCcEEEEEEEEEEecCCcchH-HHHhc-CCc
Confidence            3345666777777654 799999999999988  6  33444433   3453  6899999999999985 54444 543

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.60  E-value=7.4e-14  Score=131.23  Aligned_cols=70  Identities=16%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             eecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072          149 VIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE  224 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~  224 (413)
                      .++...+.+.|.+.+.+. |++++++++|+++..  +  ++.+.+.+++|+++++|.||.|+|.++. +.+.+ +..
T Consensus       108 ~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vR~~~-~~~  178 (391)
T PRK08020        108 MVENRVLQLALWQALEAHPNVTLRCPASLQALQR--D--DDGWELTLADGEEIQAKLVIGADGANSQ-VRQMA-GIG  178 (391)
T ss_pred             EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE--c--CCeEEEEECCCCEEEeCEEEEeCCCCch-hHHHc-CCC
Confidence            455677888888887776 899999999999987  6  4567787778878999999999999985 44443 543

>PRK09126 hypothetical protein; Provisional

Probab=99.60  E-value=1.6e-13  Score=129.07  Aligned_cols=65  Identities=15%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             cHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          151 KPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ....+.+.+.+.+.+ .|++++++++|++++.  +  ++.+.|.+++|+++++|.||.|+|..+. +.+.+
T Consensus       108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~  173 (392)
T PRK09126        108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT--D--DDGAQVTLANGRRLTARLLVAADSRFSA-TRRQL  173 (392)
T ss_pred             eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE--c--CCeEEEEEcCCCEEEeCEEEEeCCCCch-hhHhc
Confidence            335566667666644 6899999999999988  6  3567777788888999999999998774 43443

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.59  E-value=5.3e-13  Score=130.15  Aligned_cols=66  Identities=21%  Similarity=0.234  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeC--Cc--cEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072          153 TKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTS--SG--EEFWGKKCVVTAGAWVGKLVKKISGLE  224 (413)
Q Consensus       153 ~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g--~~i~ad~vV~A~G~~~~~l~~~~~g~~  224 (413)
                      ..+.+.|.+.+.+. |++++++++|++++.  +  .+++.++..  +|  ++++||+||.|+|.+|. +.+.+ ++.
T Consensus       113 ~~le~~L~~~~~~~~gv~v~~g~~v~~i~~--~--~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~-vR~~l-g~~  183 (538)
T PRK06183        113 PLLEAVLRAGLARFPHVRVRFGHEVTALTQ--D--DDGVTVTLTDADGQRETVRARYVVGCDGANSF-VRRTL-GVP  183 (538)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCEEEEEEE--c--CCeEEEEEEcCCCCEEEEEEEEEEecCCCchh-HHHHc-CCe
Confidence            45666777777664 899999999999998  6  345666543  56  37999999999999875 43433 543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.59  E-value=1.8e-13  Score=128.10  Aligned_cols=214  Identities=11%  Similarity=0.091  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEE
Q 015072          153 TKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVE  231 (413)
Q Consensus       153 ~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~  231 (413)
                      ..+...|.+.+.+ .|++++++++|++++.  +  ++.+.+++++|+++++|.||.|+|.+|. +.+.+ ++...-..+.
T Consensus       110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~--~--~~~~~v~~~~g~~~~~~lvIgADG~~S~-vR~~~-gi~~~~~~~~  183 (384)
T PRK08849        110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEF--S--AEGNRVTLESGAEIEAKWVIGADGANSQ-VRQLA-GIGITAWDYR  183 (384)
T ss_pred             HHHHHHHHHHHHhCCCeEEECCCceeEEEE--c--CCeEEEEECCCCEEEeeEEEEecCCCch-hHHhc-CCCceeccCC
Confidence            3455666666655 4699999999999988  6  4567788888888999999999999884 33333 5443333333


Q ss_pred             EEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcC
Q 015072          232 TSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFA  311 (413)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p  311 (413)
                      ...+.+.+......   ....+..+...+ ...+ .|..+..+.+.........  ......    ..+.+.+.+.+.||
T Consensus       184 ~~~~v~~~~~~~~~---~~~~~~~~~~~g-~~~~-~pl~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~~  252 (384)
T PRK08849        184 QHCMLINVETEQPQ---QDITWQQFTPSG-PRSF-LPLCGNQGSLVWYDSPKRI--KQLSAM----NPEQLRSEILRHFP  252 (384)
T ss_pred             CeEEEEEEEcCCCC---CCEEEEEeCCCC-CEEE-eEcCCCceEEEEECCHHHH--HHHHcC----CHHHHHHHHHHHhh
Confidence            33333332221110   000011111112 2111 3433222222222110000  000000    12334444555555


Q ss_pred             CCCCCCCCceeeeeeee--------ccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc-CCCCccc
Q 015072          312 GRVDSSGPAATQLCMYS--------MTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS-GEAQGVE  382 (413)
Q Consensus       312 ~~~~~~~~~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~-~~~~~~~  382 (413)
                      .....  ....+...++        +..++.-++|       +-.+...-+.|+|+.+|..-|..|++.+.. +...+..
T Consensus       253 ~~~~~--~~~~~~~~~~l~~~~~~~~~~grv~LlG-------DAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~  323 (384)
T PRK08849        253 AELGE--IKVLQHGSFPLTRRHAQQYVKNNCVLLG-------DAAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDAS  323 (384)
T ss_pred             hhhCc--EEeccceEeeccccccchhccCCEEEEE-------cccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHH
Confidence            32211  1111222222        2233444444       334445557899999999999999999863 2222334


Q ss_pred             cccccccccC
Q 015072          383 LRHFRIARFK  392 (413)
Q Consensus       383 ~~~~~~~R~~  392 (413)
                      ++.|.-.|..
T Consensus       324 L~~Ye~~R~~  333 (384)
T PRK08849        324 FARYERRRRP  333 (384)
T ss_pred             HHHHHHHHhH
Confidence            6777666643

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.58  E-value=4.2e-15  Score=137.47  Aligned_cols=164  Identities=21%  Similarity=0.260  Sum_probs=85.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcce-ecccCC-ccccchHHHHHHHHHHHHHhcCCe
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTI-RATYPE-DYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      |||+|||||.+|+++|+.|+++|.+|+|+|+++..+......+++++. .+...+ ..+..-......+.......    
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~----   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR----   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH----
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc----
Confidence            799999999999999999999999999999998775332222333322 110111 00000000000000000000    


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                                     -..++...++++.|++...-+.   .+.||.               .  -.+..+++.|.+.+++
T Consensus        77 ---------------f~~~d~~~ff~~~Gv~~~~~~~---gr~fP~---------------s--~~a~~Vv~~L~~~l~~  121 (409)
T PF03486_consen   77 ---------------FSPEDLIAFFEELGVPTKIEED---GRVFPK---------------S--DKASSVVDALLEELKR  121 (409)
T ss_dssp             ---------------S-HHHHHHHHHHTT--EEE-ST---TEEEET---------------T----HHHHHHHHHHHHHH
T ss_pred             ---------------CCHHHHHHHHHhcCCeEEEcCC---CEECCC---------------C--CcHHHHHHHHHHHHHH
Confidence                           0113455566666664322110   122222               1  1347889999999999


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .|++++++++|++|..  ++ ++.+.|+++++.++.||.||+|+|..+
T Consensus       122 ~gv~i~~~~~V~~i~~--~~-~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  122 LGVEIHFNTRVKSIEK--KE-DGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             HT-EEE-S--EEEEEE--ET-TEEEEEEETTTEEEEESEEEE----SS
T ss_pred             cCCEEEeCCEeeeeee--cC-CceeEeeccCcccccCCEEEEecCCCC
Confidence            9999999999999998  62 245888886666799999999999765

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.58  E-value=1.3e-12  Score=122.74  Aligned_cols=85  Identities=12%  Similarity=0.034  Sum_probs=60.0

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI  227 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~  227 (413)
                      ..++...+.+.+.+.+.+.|++++ .++|+++..  ++ ++.+.|++++|++++|+.||.|+|.++ .+.....+...++
T Consensus        80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~--~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s-~~~~~~~~~~~~~  154 (388)
T TIGR01790        80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEA--DG-VALSTVYCAGGQRIQARLVIDARGFGP-LVQYVRFPLNVGF  154 (388)
T ss_pred             eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEe--cC-CceeEEEeCCCCEEEeCEEEECCCCch-hcccccCCCCceE
Confidence            347788899999999988899886 668988877  52 256777788887799999999999987 2211111333445


Q ss_pred             eEEEEEEEEE
Q 015072          228 QAVETSVCYW  237 (413)
Q Consensus       228 ~~~~~~~~~~  237 (413)
                      ....|..+.+
T Consensus       155 q~~~G~~~~~  164 (388)
T TIGR01790       155 QVAYGVEARL  164 (388)
T ss_pred             EEEEEEEEEE
Confidence            5555655444

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.57  E-value=1.3e-13  Score=127.86  Aligned_cols=192  Identities=20%  Similarity=0.168  Sum_probs=107.5

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI  227 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~  227 (413)
                      +.++...+.+.+.+.+.+.| .++.++.|++|..  .  +..+.+.+++|++++|+.||.|.|..+. .     +.....
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~--~--~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~-----~~~~~~  150 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEE--T--GDGVLVVLADGRTIRARVVVDARGPSSP-K-----ARPLGL  150 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEe--c--CceEEEEECCCCEEEeeEEEECCCcccc-c-----cccccc
Confidence            46788899999999888444 5566899999998  6  4467788889988999999999996543 1     222334


Q ss_pred             eEEEEEEEEEEecCCCccccccCCCCceEE------e-cCCCeeEecCCCCCCCeEEEEe--CCCCcCCCCCCCCCCCcc
Q 015072          228 QAVETSVCYWRIKEGDEADYAVGGDFPSFA------S-YGDPHVYGTPSLEYPGLIKIAL--HRGYLCDPDRRPWGPGPL  298 (413)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~p~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~  298 (413)
                      +...|..+..+.+.-..       ..+.+.      . .+..++|+.|.-+  +...+..  ...   .+.   ...++.
T Consensus       151 Q~f~G~~v~~~~~~f~~-------~~~~lMD~r~~~~~~~~~F~Y~lP~~~--~~alvE~T~fs~---~~~---~~~~~~  215 (374)
T PF05834_consen  151 QHFYGWEVETDEPVFDP-------DTATLMDFRVPQSADGPSFLYVLPFSE--DRALVEETSFSP---RPA---LPEEEL  215 (374)
T ss_pred             ceeEEEEEeccCCCCCC-------CceEEEEecccCCCCCceEEEEEEcCC--CeEEEEEEEEcC---CCC---CCHHHH
Confidence            45555554443221011       112211      1 2335789988754  3333322  221   111   111114


Q ss_pred             hHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCC-eEEecCCCCCCCCEEE---EeCC----CccccccchHHHHHHH
Q 015072          299 LDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKD-FVIDFLGGELGEDVVV---AGGF----SGHGFKMAPVVGRILA  370 (413)
Q Consensus       299 ~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~-p~ig~~~~~~~~~~~~---~~G~----~~~G~~~a~~~a~~~a  370 (413)
                      .+.|.+++.+  -++.. .++.+.-.|..|++..+. +..+       ++++.   ++|.    +|.++..+.-.|+.+|
T Consensus       216 ~~~l~~~l~~--~g~~~-~~i~~~E~G~IPm~~~~~~~~~~-------~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia  285 (374)
T PF05834_consen  216 KARLRRYLER--LGIDD-YEILEEERGVIPMTTGGFPPRFG-------QRVIRIGTAGGMVKPSTGYSFARIQRQADAIA  285 (374)
T ss_pred             HHHHHHHHHH--cCCCc-eeEEEeecceeecccCCCccccC-------CCeeeEEccccCCCCcccHHHHHHHHHHHHHH
Confidence            5556666655  23332 246677889999954322 2211       22222   2221    1334444555777788


Q ss_pred             HHHHc
Q 015072          371 DLVLS  375 (413)
Q Consensus       371 ~~i~~  375 (413)
                      +.+..
T Consensus       286 ~~l~~  290 (374)
T PF05834_consen  286 DALAK  290 (374)
T ss_pred             HHHhh
Confidence            88875

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.57  E-value=7.5e-13  Score=119.79  Aligned_cols=229  Identities=18%  Similarity=0.171  Sum_probs=157.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCC-CCCCCCCcceecccCCcccc-----------------
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHR-GSSHGESRTIRATYPEDYYH-----------------   65 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~-~~s~~~~~~~~~~~~~~~~~-----------------   65 (413)
                      +++||++||||++|.++++.|++.  .++|+|+||-+..+.- +..++++|..|....+..|.                 
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In   81 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN   81 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence            469999999999999999999996  6899999998766433 33456666666544332221                 


Q ss_pred             chHHHHHHHHHHHHHhcCC----eeEeeeeeee--eCCCChHHHHHHHHHHHhCC--CCcccc-CHHHHHHhcCCccc--
Q 015072           66 PMVLESSLLWEQAQSEIGY----KVYFKAHQFD--MGPSENKSLRSVIASCRKNS--VPHQVL-DCRQVLQKYSGRIE--  134 (413)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g--~~~~~l-~~~~~~~~~p~~~~--  134 (413)
                      +-+..+.++|..+.+.--+    .++.+...+.  +...+.+.++..++.++..-  ..+++. +.+++.+..|..+.  
T Consensus        82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR  161 (488)
T PF06039_consen   82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGR  161 (488)
T ss_pred             HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCC
Confidence            1123456677776655322    2344444443  34455666777777776542  234555 46777777775221  


Q ss_pred             -CCCCeEEEEecCCeeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeC-----CccEEEeCeEEE
Q 015072          135 -IPENWVGVTTELGGVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTS-----SGEEFWGKKCVV  207 (413)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----~g~~i~ad~vV~  207 (413)
                       ..+...+.+...+--+|-..+.+.|.+.+.+. |++++++++|++|.+  .+ ++.|.|.+.     +..+++|+.|++
T Consensus       162 ~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r--~~-dg~W~v~~~~~~~~~~~~v~a~FVfv  238 (488)
T PF06039_consen  162 DPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR--NG-DGRWEVKVKDLKTGEKREVRAKFVFV  238 (488)
T ss_pred             CCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE--CC-CCCEEEEEEecCCCCeEEEECCEEEE
Confidence             23344566777777788889999999998887 999999999999999  63 255777642     233799999999


Q ss_pred             cCCcChhhhhhhhcCC----CcceeEEEEEEEEEE
Q 015072          208 TAGAWVGKLVKKISGL----ELPIQAVETSVCYWR  238 (413)
Q Consensus       208 A~G~~~~~l~~~~~g~----~~p~~~~~~~~~~~~  238 (413)
                      .+|+++-.|++.. |+    .....|+.|+.+.-.
T Consensus       239 GAGG~aL~LLqks-gi~e~~gyggfPVsG~fl~~~  272 (488)
T PF06039_consen  239 GAGGGALPLLQKS-GIPEGKGYGGFPVSGQFLRCK  272 (488)
T ss_pred             CCchHhHHHHHHc-CChhhcccCCCcccceEEecC
Confidence            9999999898876 54    344567777765544

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.57  E-value=1.5e-12  Score=127.36  Aligned_cols=68  Identities=22%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEE--EeCCcc-EEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072          153 TKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSGE-EFWGKKCVVTAGAWVGKLVKKISGLELP  226 (413)
Q Consensus       153 ~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~-~i~ad~vV~A~G~~~~~l~~~~~g~~~p  226 (413)
                      ..+.+.|.+.+.+. +++++++++|++++.  +  .+.+.+  +..+++ ++++|+||.|+|.++. +.+.+ |+...
T Consensus       125 ~~le~~L~~~~~~~~~v~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~-vR~~l-g~~~~  196 (547)
T PRK08132        125 YYVEGYLVERAQALPNIDLRWKNKVTGLEQ--H--DDGVTLTVETPDGPYTLEADWVIACDGARSP-LREML-GLEFE  196 (547)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--c--CCEEEEEEECCCCcEEEEeCEEEECCCCCcH-HHHHc-CCCCC
Confidence            35566777777665 699999999999988  6  334444  334554 6999999999999885 43433 55433

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.56  E-value=1.1e-12  Score=123.72  Aligned_cols=79  Identities=13%  Similarity=0.058  Sum_probs=55.6

Q ss_pred             cHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeE
Q 015072          151 KPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQA  229 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~  229 (413)
                      .-..+.+.|.+.+.+. |++++++++|+++..  +  ...+.|.+++|++++||.||.|.|.++. +.+.+ +...+...
T Consensus       109 ~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~lvIgADG~~S~-vR~~~-~~~~~~~~  182 (405)
T PRK08850        109 ENRVIQLALLEQVQKQDNVTLLMPARCQSIAV--G--ESEAWLTLDNGQALTAKLVVGADGANSW-LRRQM-DIPLTHWD  182 (405)
T ss_pred             EHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe--e--CCeEEEEECCCCEEEeCEEEEeCCCCCh-hHHHc-CCCeeEEe
Confidence            3345666777777664 799999999999988  6  4567788888888999999999999874 43444 54444333


Q ss_pred             EEEEEE
Q 015072          230 VETSVC  235 (413)
Q Consensus       230 ~~~~~~  235 (413)
                      +....+
T Consensus       183 ~~~~~~  188 (405)
T PRK08850        183 YGHSAL  188 (405)
T ss_pred             eccEEE
Confidence            333333

>PRK07045 putative monooxygenase; Reviewed

Probab=99.56  E-value=1.4e-12  Score=122.39  Aligned_cols=63  Identities=19%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             ecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          150 IKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.-..+.+.|.+.+.. .|++++++++|++++.  ++++..+.|++++|+++.+|.||.|.|.++.
T Consensus       103 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        103 IPCEQLRRLLLAKLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDGERVAPTVLVGADGARSM  166 (388)
T ss_pred             ccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence            3345677777777654 5799999999999998  6332345677888888999999999999884

>PRK06996 hypothetical protein; Provisional

Probab=99.54  E-value=3.7e-13  Score=126.50  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=54.9

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc---cEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG---EEFWGKKCVVTAGAWVGKLVKKISGLE  224 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~vV~A~G~~~~~l~~~~~g~~  224 (413)
                      ..++-..+.+.|.+.+.+.|++++.++++++++.  +  ..++.+...++   ++++||.||.|+|..++...+.+ +..
T Consensus       110 ~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~--~--~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~-~~~  184 (398)
T PRK06996        110 YVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQ--D--ADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA-GDS  184 (398)
T ss_pred             EEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeee--c--CCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc-CCC
Confidence            3456678889999999988999999999999987  6  45677776644   47999999999997433333443 443


Q ss_pred             cc
Q 015072          225 LP  226 (413)
Q Consensus       225 ~p  226 (413)
                      .+
T Consensus       185 ~~  186 (398)
T PRK06996        185 AR  186 (398)
T ss_pred             ce
Confidence            33

>PLN02463 lycopene beta cyclase

Probab=99.54  E-value=1e-12  Score=123.51  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.++...+.+.+.+.+.+.|++++ .++|++|+.  .  ++.+.|++++|++++||.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~--~--~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVH--E--ESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEE--c--CCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            346778888999999888899997 579999988  6  4567888888878999999999998764

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.53  E-value=2.2e-13  Score=126.46  Aligned_cols=72  Identities=25%  Similarity=0.273  Sum_probs=49.8

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-Ccc--EEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-SGE--EFWGKKCVVTAGAWVGKLVKKISGLE  224 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~vV~A~G~~~~~l~~~~~g~~  224 (413)
                      .++...+.+.|.+.+++.|++++++++|+++..  +++...+.+... +|+  +++||.||.|.|.+|. +.+.+ +..
T Consensus       107 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~--d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~-vR~~l-~~~  181 (356)
T PF01494_consen  107 VIDRPELDRALREEAEERGVDIRFGTRVVSIEQ--DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK-VRKQL-GID  181 (356)
T ss_dssp             EEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEE--ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H-HHHHT-TGG
T ss_pred             hhhHHHHHHhhhhhhhhhhhhheeeeecccccc--cccccccccccccCCceeEEEEeeeecccCcccc-hhhhc-ccc
Confidence            345567888999999999999999999999988  632212233332 343  6999999999999984 44444 543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.53  E-value=5.5e-12  Score=118.16  Aligned_cols=68  Identities=25%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC------Cc--cEEEeCeEEEcCCcChhhhhhhh
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS------SG--EEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~------~g--~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      .++...+-+.|.+.+.+.|++++. +.|+++..  +  ++.+.+...      ++  .+++||.||.|+|.++. +.+.+
T Consensus        88 ~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~--~--~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~-v~r~l  161 (388)
T TIGR02023        88 MVRREVFDSYLRERAQKAGAELIH-GLFLKLER--D--RDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP-VAKEL  161 (388)
T ss_pred             eeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEE--c--CCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH-HHHHc
Confidence            467788889999999889999975 56999987  6  345555433      22  36999999999999884 54544


Q ss_pred             cCC
Q 015072          221 SGL  223 (413)
Q Consensus       221 ~g~  223 (413)
                       +.
T Consensus       162 -g~  163 (388)
T TIGR02023       162 -GL  163 (388)
T ss_pred             -CC
Confidence             44

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.52  E-value=4.6e-12  Score=124.81  Aligned_cols=221  Identities=18%  Similarity=0.166  Sum_probs=109.5

Q ss_pred             ecHHHHHHHHHHHHHHcC--CeEecCceEEEEEeeeccC-CCcEEEEeC------Cc--cEEEeCeEEEcCCcChhhhhh
Q 015072          150 IKPTKAVSMFQTLAIKNG--AVLRDNTEVKTVLKVKDDV-RGGVTVVTS------SG--EEFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~g--v~i~~~~~V~~i~~~~~~~-~~~~~v~~~------~g--~~i~ad~vV~A~G~~~~~l~~  218 (413)
                      ++-..+.+.|.+.+.+.+  ++++++++|++++.  ++. ...+.++..      +|  ++++||+||-|.|+.|. +.+
T Consensus       138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~--~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~-VR~  214 (634)
T PRK08294        138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEV--DEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR-VRK  214 (634)
T ss_pred             eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEE--CCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH-HHH
Confidence            333567777888887766  47788999999987  632 234555542      35  47999999999999884 434


Q ss_pred             hhcCCCcceeEEEEEEEEEEe--cCCCccccccCCCCceEEecCCCeeEecCCCCCCC-eEEEEeCCCCcCCCCCCCCCC
Q 015072          219 KISGLELPIQAVETSVCYWRI--KEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPG-LIKIALHRGYLCDPDRRPWGP  295 (413)
Q Consensus       219 ~~~g~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~~  295 (413)
                      .+ |+..+-.........+.+  ....+ ..   .....+.......+.++|...  + ++.+..... ..++....+..
T Consensus       215 ~l-gi~~~G~~~~~~~~v~dv~~~~~~p-~~---~~~~~~~~~~~g~~~~~P~~~--g~~~r~~~~~~-~~~~~~~~~~~  286 (634)
T PRK08294        215 AI-GRELRGDSANHAWGVMDVLAVTDFP-DI---RLKCAIQSASEGSILLIPREG--GYLVRLYVDLG-EVPPDERVAVR  286 (634)
T ss_pred             hc-CCCccCCcccceEEEEEEEEccCCC-Cc---ceEEEEecCCCceEEEEECCC--CeEEEEEEecC-cCCCccccccc
Confidence            33 554432222222222221  11111 00   001111112234566667643  4 233322111 11111111111


Q ss_pred             CcchHHHHHHHHhhcCC-CCCCCCCceeeeeeee--------cc----------CCCCeEEecCCCCCCCCEEEEeCCCc
Q 015072          296 GPLLDSLKELIQGRFAG-RVDSSGPAATQLCMYS--------MT----------PDKDFVIDFLGGELGEDVVVAGGFSG  356 (413)
Q Consensus       296 ~~~~~~l~~~~~~~~p~-~~~~~~~~~~~~g~~~--------~t----------~d~~p~ig~~~~~~~~~~~~~~G~~~  356 (413)
                      ....+++.+.+.+.++. ..+. ..+..|+ .+.        +.          .++..++|       +-.+...-++|
T Consensus       287 ~~t~e~l~~~~~~~~~p~~~~~-~~v~w~s-~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaG-------DAAH~hsP~~G  357 (634)
T PRK08294        287 NTTVEEVIAKAQRILHPYTLDV-KEVAWWS-VYEVGQRLTDRFDDVPAEEAGTRLPRVFIAG-------DACHTHSAKAG  357 (634)
T ss_pred             cCCHHHHHHHHHHhcCCCCCce-eEEeEEe-cccccceehhhcccccccccccccCCEEEEe-------cCccCCCCccc
Confidence            11567777788887643 2321 1222232 222        10          13344444       33333445677


Q ss_pred             cccccchH----HHHHHHHHHHcCCCCcccccccccccc
Q 015072          357 HGFKMAPV----VGRILADLVLSGEAQGVELRHFRIARF  391 (413)
Q Consensus       357 ~G~~~a~~----~a~~~a~~i~~~~~~~~~~~~~~~~R~  391 (413)
                      +|+.+|.-    +|..|+..+. |...+..++.|.-.|.
T Consensus       358 QGmN~giqDA~nLawkLa~vl~-g~a~~~lL~tYe~ERr  395 (634)
T PRK08294        358 QGMNVSMQDGFNLGWKLAAVLS-GRSPPELLHTYSAERQ  395 (634)
T ss_pred             cchhhHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHH
Confidence            88888665    4555666554 5444455777766663

>PRK07588 hypothetical protein; Provisional

Probab=99.51  E-value=2.6e-12  Score=120.65  Aligned_cols=58  Identities=14%  Similarity=0.030  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      -..+.+.|.+.+ ..+++++++++|++++.  +  ++.+.+++++|+++++|.||.|.|.+|.
T Consensus       102 r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        102 RGDLAAAIYTAI-DGQVETIFDDSIATIDE--H--RDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             HHHHHHHHHHhh-hcCeEEEeCCEEeEEEE--C--CCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            355666666654 34799999999999988  6  4567888889988999999999999885

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.51  E-value=1.5e-11  Score=119.25  Aligned_cols=67  Identities=27%  Similarity=0.256  Sum_probs=53.3

Q ss_pred             EEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          141 GVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      +.+.+.+|.   ..+.+.|.+.+++.|++|+++++|++|..  ++ +..+.|++++|+++.||.||+|++...
T Consensus       210 g~~~~~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~  276 (502)
T TIGR02734       210 GVWFPRGGT---GALVAAMAKLAEDLGGELRLNAEVIRIET--EG-GRATAVHLADGERLDADAVVSNADLHH  276 (502)
T ss_pred             eEEEcCCCH---HHHHHHHHHHHHHCCCEEEECCeEEEEEe--eC-CEEEEEEECCCCEEECCEEEECCcHHH
Confidence            344444443   57888999999999999999999999998  63 245678888888899999999999743

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK11445 putative oxidoreductase; Provisional

Probab=99.51  E-value=8.9e-12  Score=114.96  Aligned_cols=66  Identities=17%  Similarity=0.194  Sum_probs=48.5

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEeCeEEEcCCcChhhhhhhh
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      .++...+.+.|.+. ...|+++++++.|+++..  +  ++++.+.. .+|+  +++||.||.|+|..+. +.+.+
T Consensus        95 ~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~--~--~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~-vr~~l  163 (351)
T PRK11445         95 NIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWR--E--DDGYHVIFRADGWEQHITARYLVGADGANSM-VRRHL  163 (351)
T ss_pred             cccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEE--c--CCEEEEEEecCCcEEEEEeCEEEECCCCCcH-HhHHh
Confidence            36667777777664 467899999999999988  6  34566653 4554  6899999999999874 43433

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.51  E-value=2.1e-11  Score=115.40  Aligned_cols=68  Identities=19%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccC-CCcEEEEeCC-------c--cEEEeCeEEEcCCcChhhhhh
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV-RGGVTVVTSS-------G--EEFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~-------g--~~i~ad~vV~A~G~~~~~l~~  218 (413)
                      .++...+-+.|.+.+.+.|++++.. .++++..  .+. ++.+.++..+       |  .+++||.||.|+|..+ .+.+
T Consensus       128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~--~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr  203 (450)
T PLN00093        128 MVRREVLDSFLRERAQSNGATLING-LFTRIDV--PKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAK  203 (450)
T ss_pred             EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEe--ccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHH
Confidence            4677888899999999999999854 6888765  321 2344454321       3  3799999999999987 4555


Q ss_pred             hh
Q 015072          219 KI  220 (413)
Q Consensus       219 ~~  220 (413)
                      .+
T Consensus       204 ~l  205 (450)
T PLN00093        204 DI  205 (450)
T ss_pred             Hh
Confidence            54

>PRK05868 hypothetical protein; Validated

Probab=99.50  E-value=6.8e-12  Score=116.56  Aligned_cols=63  Identities=11%  Similarity=0.053  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ...+.+.+.+ +...|++++++++|++++.  +  .+.+.++.++|+++++|.||-|.|.+|. +.+.+
T Consensus       104 R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~dg~~~~adlvIgADG~~S~-vR~~~  166 (372)
T PRK05868        104 RDDLVELLYG-ATQPSVEYLFDDSISTLQD--D--GDSVRVTFERAAAREFDLVIGADGLHSN-VRRLV  166 (372)
T ss_pred             HHHHHHHHHH-hccCCcEEEeCCEEEEEEe--c--CCeEEEEECCCCeEEeCEEEECCCCCch-HHHHh
Confidence            3455555543 3346899999999999987  6  4678888888888999999999999884 43433

>PRK06753 hypothetical protein; Provisional

Probab=99.50  E-value=3.2e-12  Score=119.43  Aligned_cols=60  Identities=13%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .++-..+.+.|.+.+.  +.+++++++|++++.  +  ++.+.+++++|+++++|.||.|.|.+|.
T Consensus        94 ~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         94 TLHRQTLIDIIKSYVK--EDAIFTGKEVTKIEN--E--TDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             cccHHHHHHHHHHhCC--CceEEECCEEEEEEe--c--CCcEEEEECCCCEEecCEEEECCCcchH
Confidence            3444566666665543  467899999999988  6  4668888888888999999999999884

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.50  E-value=6.2e-12  Score=117.17  Aligned_cols=62  Identities=15%  Similarity=0.122  Sum_probs=50.8

Q ss_pred             eeecHHHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.-..+.+.|.+.+.+.+ ++++++++|+++..  +  .+.+.+..+++ ++++|.||.|.|.+|.
T Consensus        99 ~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--~--~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617         99 YVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS--H--NDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             EEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE--c--CCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            44566788888988887765 89999999999988  6  45677777776 6999999999999885

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.49  E-value=1.3e-12  Score=113.86  Aligned_cols=145  Identities=21%  Similarity=0.165  Sum_probs=92.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|+.|++.|++|+|+|+....++.....   +.+.   .     ...                 
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~g---g~~~---~-----~~~-----------------   75 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGG---GMLF---N-----KIV-----------------   75 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccC---cccc---c-----ccc-----------------
Confidence            46899999999999999999999999999999987664321110   1000   0     000                 


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                               .    .   ......+.+.++++...                       ......+++..+...|.+.+.+
T Consensus        76 ---------v----~---~~~~~~l~~~gv~~~~~-----------------------~~g~~~vd~~~l~~~L~~~A~~  116 (257)
T PRK04176         76 ---------V----Q---EEADEILDEFGIRYKEV-----------------------EDGLYVADSVEAAAKLAAAAID  116 (257)
T ss_pred             ---------c----h---HHHHHHHHHCCCCceee-----------------------cCcceeccHHHHHHHHHHHHHH
Confidence                     0    0   01112223333321110                       0011345778899999999999


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeC-----------CccEEEeCeEEEcCCcChhhhhhhh
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-----------SGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----------~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      .|+++++++.|+++..  ++++....+...           +..+++|+.||+|||+++. +.+.+
T Consensus       117 ~Gv~I~~~t~V~dl~~--~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~-v~~~l  179 (257)
T PRK04176        117 AGAKIFNGVSVEDVIL--REDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE-VVSVL  179 (257)
T ss_pred             cCCEEEcCceeceeeE--eCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH-HHHHH
Confidence            9999999999999987  532222222211           1236999999999999885 44443

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.48  E-value=6.8e-13  Score=127.35  Aligned_cols=187  Identities=18%  Similarity=0.131  Sum_probs=100.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   83 (413)
                      ..++||||||+|++|+++|+.|+++|.+|+||||.+.....+++....+ +........ ..........+++++.+..+
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTG   80 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence            4568999999999999999999999999999999874211122222223 221111110 00000111234444443322


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      ....  ...+....   +...+..+++.+.|+++........   .+     ...  ..+...    ....++..|.+.+
T Consensus        81 ~~~~--~~~~~~~~---~~s~~~~~wl~~~Gv~~~~~~~~~~---~~-----~~~--~~~~~g----~g~~l~~~l~~~~  141 (466)
T PRK08274         81 GRTD--EALARLLI---RESSDCRDWMRKHGVRFQPPLSGAL---HV-----ART--NAFFWG----GGKALVNALYRSA  141 (466)
T ss_pred             CCCC--HHHHHHHH---HcCHHHHHHHHhCCceEeecCCCcc---cc-----CCC--CeeecC----CHHHHHHHHHHHH
Confidence            1000  00000000   0002334455566665433211100   00     000  001111    1467888898999


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEEe--CCcc--EEEeCeEEEcCCcChh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT--SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ++.|++++++++|++|..  +++ ..+.+..  .+++  .++++.||+|+|.+..
T Consensus       142 ~~~gv~i~~~t~v~~l~~--~~g-~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        142 ERLGVEIRYDAPVTALEL--DDG-RFVGARAGSAAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             HHCCCEEEcCCEEEEEEe--cCC-eEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence            999999999999999988  632 3333433  3332  6899999999998754

>PRK07538 hypothetical protein; Provisional

Probab=99.48  E-value=1.9e-11  Score=115.53  Aligned_cols=62  Identities=15%  Similarity=0.140  Sum_probs=44.9

Q ss_pred             eecHHHHHHHHHHHHHH-cC-CeEecCceEEEEEeeeccCCCcEEEEeCC---c--cEEEeCeEEEcCCcChh
Q 015072          149 VIKPTKAVSMFQTLAIK-NG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSS---G--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~-~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~vV~A~G~~~~  214 (413)
                      .++...+.+.|.+.+.+ .| ..++++++|+++..  ++  +++.+...+   |  ++++||.||.|.|.+|.
T Consensus        98 ~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~--~~--~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~  166 (413)
T PRK07538         98 SIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ--DA--DVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA  166 (413)
T ss_pred             EEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe--cC--CceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence            35667788888887755 36 46999999999987  62  333343322   2  37999999999999885

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.47  E-value=8.3e-13  Score=127.30  Aligned_cols=182  Identities=20%  Similarity=0.205  Sum_probs=101.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc-cccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      .++||||||+|.+|+++|+.+++.|.+|+||||.+..++...  ...+.+....... ...........++.++.+... 
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~--~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~-  136 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM--KASSGMNASETKFQKAQGIADSNDKFYEETLKGGG-  136 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc--ccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcC-
Confidence            468999999999999999999999999999999987654321  1112221100000 000000001123333322110 


Q ss_pred             eeEeeeeeeeeCCCChHHH-------HHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSL-------RSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      .           ..+.+.+       .+..+++...|+++..+.      ..+. ..    ....+.+..+......++.
T Consensus       137 ~-----------~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~------~~~g-~~----~~r~~~p~~g~~~g~~l~~  194 (506)
T PRK06481        137 G-----------TNDKALLRYFVDNSASAIDWLDSMGIKLDNLT------ITGG-MS----EKRTHRPHDGSAVGGYLVD  194 (506)
T ss_pred             C-----------CCCHHHHHHHHhccHHHHHHHHHcCceEeecc------cCCC-CC----CCceeccCCCCCChHHHHH
Confidence            0           0011111       223455555665543211      0011 00    0111223233334466888


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .|.+.+++.|++++++++|++|..  +++. .++.+...+++  ++.++.||+|+|.+..
T Consensus       195 ~L~~~~~~~gv~i~~~t~v~~l~~--~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        195 GLLKNVQERKIPLFVNADVTKITE--KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             HHHHHHHHcCCeEEeCCeeEEEEe--cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence            888999999999999999999987  6321 13444444443  6899999999998864

>PRK07233 hypothetical protein; Provisional

Probab=99.45  E-value=1e-10  Score=111.77  Aligned_cols=56  Identities=29%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      ..+.+.|.+.+.+.|++|+++++|++|+.  +  ++.+.+...+++++.+|+||+|+...
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~--~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVI--D--GGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEE--c--CCceEEEEeCCceEECCEEEECCCHH
Confidence            56888888888888999999999999998  6  34444444556679999999999864

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.45  E-value=2.8e-12  Score=122.85  Aligned_cols=65  Identities=32%  Similarity=0.416  Sum_probs=53.7

Q ss_pred             EEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCc
Q 015072          141 GVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGA  211 (413)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~  211 (413)
                      +++.+.+|+   ..++++|.+.+++.|++|+++++|++|..  +++ .++.+.+.+|+.+++|.||.+...
T Consensus       215 G~~~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v--~~g-~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         215 GVFYPRGGM---GALVDALAELAREHGGEIRTGAEVSQILV--EGG-KGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             CeeeeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEE--eCC-cceEEeccccceeccceeEecCch
Confidence            344554444   68899999999999999999999999999  743 467888888866999999999987

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.43  E-value=1.6e-10  Score=108.24  Aligned_cols=68  Identities=19%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeecc-CCCcEEEE--eCC-----c--cEEEeCeEEEcCCcChhhhhh
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD-VRGGVTVV--TSS-----G--EEFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~-~~~~~~v~--~~~-----g--~~i~ad~vV~A~G~~~~~l~~  218 (413)
                      .++...+-+.|.+.+.+.|++++.. .+.++..  .. .++.+.|+  ..+     |  .+++|+.||.|+|..+ .+.+
T Consensus        89 ~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~--~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~  164 (398)
T TIGR02028        89 MLRREVLDSFLRRRAADAGATLING-LVTKLSL--PADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAK  164 (398)
T ss_pred             eeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEe--ccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHH
Confidence            4666788888999999999999866 4777754  21 12334443  222     3  2699999999999988 4555


Q ss_pred             hh
Q 015072          219 KI  220 (413)
Q Consensus       219 ~~  220 (413)
                      .+
T Consensus       165 ~~  166 (398)
T TIGR02028       165 EI  166 (398)
T ss_pred             Hh
Confidence            55

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.43  E-value=4e-11  Score=114.04  Aligned_cols=86  Identities=9%  Similarity=0.085  Sum_probs=60.7

Q ss_pred             eecHHHHHHHHHHHHHHcC---CeEecCceEEEEEeeec----c-CCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          149 VIKPTKAVSMFQTLAIKNG---AVLRDNTEVKTVLKVKD----D-VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~g---v~i~~~~~V~~i~~~~~----~-~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      .++-..+.+.|.+.+.+.+   ++++++++|++++.  .    + +...++|++.+|++++||.||.|.|.+|. + ++.
T Consensus       113 ~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~--~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~-v-R~~  188 (437)
T TIGR01989       113 IIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTI--PSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN-V-RKA  188 (437)
T ss_pred             EEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEe--ccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh-h-HHH
Confidence            4455677788888877764   89999999999975  3    1 12567888888889999999999999884 4 333


Q ss_pred             cCCCcceeEEEEEEEEEE
Q 015072          221 SGLELPIQAVETSVCYWR  238 (413)
Q Consensus       221 ~g~~~p~~~~~~~~~~~~  238 (413)
                      .++...-..+.+..+...
T Consensus       189 ~gi~~~g~~y~q~~~v~~  206 (437)
T TIGR01989       189 ANIDTTGWNYNQHAVVAT  206 (437)
T ss_pred             cCCCccceeeccEEEEEE
Confidence            366555444444444333

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.42  E-value=1.4e-10  Score=108.92  Aligned_cols=59  Identities=14%  Similarity=0.003  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.|.+.+.+.|++++++++|++++.  .++ ..+.|+. .+|+  ++++|.||.|.|..|.
T Consensus       103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~--~~~-~~~~V~~~~~G~~~~i~ad~vVgADG~~S~  164 (392)
T PRK08243        103 TEVTRDLMAARLAAGGPIRFEASDVALHD--FDS-DRPYVTYEKDGEEHRLDCDFIAGCDGFHGV  164 (392)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeeeEEEEEe--cCC-CceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence            45667777777778999999999999875  322 3344444 3554  6899999999999884

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.41  E-value=3.1e-11  Score=113.60  Aligned_cols=61  Identities=15%  Similarity=0.175  Sum_probs=47.6

Q ss_pred             ecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEe---CCccEEEeCeEEEcCCcChh
Q 015072          150 IKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ++-..+.+.|.+.+.+. +++++++++|+++..  +  .+.+.++.   .+++++.+|.||-|.|.+|.
T Consensus       104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~--~--~~~v~v~~~~~~~~~~~~adlvIgADG~~S~  168 (400)
T PRK06475        104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ--T--GNSITATIIRTNSVETVSAAYLIACDGVWSM  168 (400)
T ss_pred             ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec--C--CCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence            45578888888887664 799999999999988  6  34555543   34457999999999999884

>PRK07121 hypothetical protein; Validated

Probab=99.39  E-value=5.1e-12  Score=121.90  Aligned_cols=62  Identities=23%  Similarity=0.228  Sum_probs=46.6

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEe-CeEEEcCCcChh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWG-KKCVVTAGAWVG  214 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~a-d~vV~A~G~~~~  214 (413)
                      ....+++.|.+.+++.|++++++++|++|..  ++++..+.|.. .+++  .+++ +.||+|||.++.
T Consensus       175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIV--DDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             chHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--CCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence            3567888899999999999999999999988  63223333332 2232  5889 999999998864

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.39  E-value=2.6e-11  Score=105.44  Aligned_cols=140  Identities=24%  Similarity=0.244  Sum_probs=87.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|+.|+++|++|+|+||....++..  ++ .+...   .     .+                  
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~--~~-gg~~~---~-----~~------------------   70 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS--WG-GGMLF---S-----KI------------------   70 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc--cC-CCcce---e-----cc------------------
Confidence            46999999999999999999999999999999998765321  11 11100   0     00                  


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                              .. ..      ...+.++..++++...               ..   +.     ...+...+.+.|.+.+.+
T Consensus        71 --------~~-~~------~~~~~l~~~gi~~~~~---------------~~---g~-----~~~~~~el~~~L~~~a~e  112 (254)
T TIGR00292        71 --------VV-EK------PAHEILDEFGIRYEDE---------------GD---GY-----VVADSAEFISTLASKALQ  112 (254)
T ss_pred             --------cc-cc------hHHHHHHHCCCCeeec---------------cC---ce-----EEeeHHHHHHHHHHHHHH
Confidence                    00 00      0111122233321100               00   00     123557888889999999


Q ss_pred             cCCeEecCceEEEEEeeeccCC-CcEEEEeC-----------CccEEEeCeEEEcCCcChh
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVR-GGVTVVTS-----------SGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~-----------~g~~i~ad~vV~A~G~~~~  214 (413)
                      .|++++.++.|+++..  +++. ....|.+.           +..+++|+.||.|||..+.
T Consensus       113 ~GV~I~~~t~V~dli~--~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~  171 (254)
T TIGR00292       113 AGAKIFNGTSVEDLIT--RDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE  171 (254)
T ss_pred             cCCEEECCcEEEEEEE--eCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence            9999999999999988  6331 22333322           1236999999999998763

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PLN02985 squalene monooxygenase

Probab=99.38  E-value=8.4e-11  Score=113.08  Aligned_cols=69  Identities=22%  Similarity=0.273  Sum_probs=47.0

Q ss_pred             eeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCC-CcEEEEeCCcc--EEEeCeEEEcCCcChhhhhhhh
Q 015072          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE--EFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ..++..++.+.|.+.+.+. |++++. ..|+++..  +++. .++.+.+.+|+  ++.||.||.|+|.+|. +.+.+
T Consensus       142 ~~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~--~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~-vR~~l  214 (514)
T PLN02985        142 RSFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIE--EKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN-LRRSL  214 (514)
T ss_pred             eeeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEE--cCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH-HHHHh
Confidence            3455678888898888765 688885 46777766  5221 13444455665  4678999999999885 44444

>TIGR02730 carot_isom carotene isomerase

Probab=99.38  E-value=7.1e-12  Score=121.02  Aligned_cols=69  Identities=23%  Similarity=0.370  Sum_probs=56.9

Q ss_pred             EEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          140 VGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+++.+.++.   ..+++.|.+.+++.|++|+++++|++|..  ++ +..+.|++.+|+++.+|.||+|+|.|..
T Consensus       219 ~g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~--~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~  287 (493)
T TIGR02730       219 GGINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIIL--EN-GKAVGVKLADGEKIYAKRIVSNATRWDT  287 (493)
T ss_pred             ceEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEe--cC-CcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence            3556666665   57889999999999999999999999988  63 3566788888888999999999998754

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.38  E-value=4.4e-12  Score=120.24  Aligned_cols=194  Identities=22%  Similarity=0.241  Sum_probs=97.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcCCeeE
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIGYKVY   87 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   87 (413)
                      ||||||+|++|+++|+.|+++|.+|+||||....++  ++....+.+........ ...........+.++.+...... 
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg--~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-   77 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG--SSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLN-   77 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS--GGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc--ccccccCceeeecccccccccccccccccceeeeccccccc-
Confidence            899999999999999999999999999999988654  33223333322221110 00011112233334433321110 


Q ss_pred             eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEE-ecC---CeeecHHHHHHHHHHH
Q 015072           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVT-TEL---GGVIKPTKAVSMFQTL  162 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~  162 (413)
                       ....+..   -.+...+..+++.+.++++..-..... ...++. .  ...+.... ...   ........+...|.+.
T Consensus        78 -~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  150 (417)
T PF00890_consen   78 -DPDLVRA---FVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGG-H--SPRWRSPPGNPDPPFGGLGGGKALIEALAKA  150 (417)
T ss_dssp             --HHHHHH---HHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETT-E--SSTEEEEESSTTSSSHCCCHHHHHHHHHHHH
T ss_pred             -ccchhhh---hhhcccceehhhhhhcccccccccccccccccCC-c--cccceeeeccccccccccccHHHHHHHHHHH
Confidence             0000000   011223445566666665433100000 000000 0  00101111 111   1122346788999999


Q ss_pred             HHHcCCeEecCceEEEEEeeeccCC-CcEEEE-eCCcc--EEEeCeEEEcCCcChh
Q 015072          163 AIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVV-TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~-~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +++.|++|+++++|++|..  +++. .++.+. ..+|+  +++|+.||+|||.+..
T Consensus       151 ~~~~gv~i~~~~~~~~Li~--e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  151 AEEAGVDIRFNTRVTDLIT--EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHTTEEEEESEEEEEEEE--ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HhhcCeeeeccceeeeEEE--eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            9999999999999999999  7431 223334 23555  6889999999999986

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.38  E-value=6.3e-11  Score=109.57  Aligned_cols=190  Identities=15%  Similarity=0.079  Sum_probs=97.0

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI  227 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~  227 (413)
                      +.++..++.+.+.+.+.. +  ++.+++|+++..  +    .+.+  .+|++++|+.||.|.|..+.....      .-.
T Consensus        84 ~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~~--~----~v~l--~dg~~~~A~~VI~A~G~~s~~~~~------~~~  146 (370)
T TIGR01789        84 RSMTSTRFHEGLLQAFPE-G--VILGRKAVGLDA--D----GVDL--APGTRINARSVIDCRGFKPSAHLK------GGF  146 (370)
T ss_pred             eEEEHHHHHHHHHHhhcc-c--EEecCEEEEEeC--C----EEEE--CCCCEEEeeEEEECCCCCCCcccc------cee
Confidence            455567777777655432 3  666889998844  3    3444  677789999999999987542211      233


Q ss_pred             eEEEEEEEEEEecCCCccccccCCCCceEE------ecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHH
Q 015072          228 QAVETSVCYWRIKEGDEADYAVGGDFPSFA------SYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDS  301 (413)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (413)
                      +...|..+...  .+..  .    ..+.+.      ..+..++|..|..+  +.+.+..+. ....+..   ..++..+.
T Consensus       147 Q~f~G~~~r~~--~p~~--~----~~~~lMD~~~~q~~g~~F~Y~lP~~~--~~~lvE~T~-~s~~~~l---~~~~l~~~  212 (370)
T TIGR01789       147 QVFLGREMRLQ--EPHG--L----ENPIIMDATVDQLAGYRFVYVLPLGS--HDLLIEDTY-YADDPLL---DRNALSQR  212 (370)
T ss_pred             eEEEEEEEEEc--CCCC--C----CccEEEeeeccCCCCceEEEECcCCC--CeEEEEEEe-ccCCCCC---CHHHHHHH
Confidence            44455554443  2111  1    112221      22335688888754  434443211 0110111   11114455


Q ss_pred             HHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEE-------EeCCCccccccchHHHHHHHHHHH
Q 015072          302 LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVV-------AGGFSGHGFKMAPVVGRILADLVL  374 (413)
Q Consensus       302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~-------~~G~~~~G~~~a~~~a~~~a~~i~  374 (413)
                      |.+++.+.  .... .+++....|+.|++-++.+.--... .  +++..       ..-..|.|+..+...+..|++.+.
T Consensus       213 l~~~~~~~--g~~~-~~i~~~e~g~iPm~~~~~~~~~~~~-~--~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~  286 (370)
T TIGR01789       213 IDQYARAN--GWQN-GTPVRHEQGVLPVLLGGDFSAYQDE-V--RIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD  286 (370)
T ss_pred             HHHHHHHh--CCCc-eEEEEeeeeEEeeecCCCccccccc-C--CceeeeecccccccccccccHHHHHHHHHHHHhccC
Confidence            55555444  2221 1355556688888654311100000 0  22221       122346788888888888887774

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.38  E-value=3.4e-10  Score=109.58  Aligned_cols=46  Identities=39%  Similarity=0.452  Sum_probs=41.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      .||+|||||++|+++|..|+++|++|+|+|+.+..||+..+....|
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G   47 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRG   47 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCC
Confidence            6899999999999999999999999999999999988877654433

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.37  E-value=2.5e-11  Score=98.32  Aligned_cols=139  Identities=23%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      +.||+|||||++||++||+|+++|.||+|+|+....||....+   |.+.+..                           
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~G---Gmlf~~i---------------------------   79 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGG---GMLFNKI---------------------------   79 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccc---cccccee---------------------------
Confidence            5799999999999999999999999999999987775432221   1111100                           


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                             .+ .      +.....++..+++.+...                  .+     -.+.|+..++..|...+.+.
T Consensus        80 -------Vv-~------~~a~~iL~e~gI~ye~~e------------------~g-----~~v~ds~e~~skl~~~a~~a  122 (262)
T COG1635          80 -------VV-R------EEADEILDEFGIRYEEEE------------------DG-----YYVADSAEFASKLAARALDA  122 (262)
T ss_pred             -------ee-c------chHHHHHHHhCCcceecC------------------Cc-----eEEecHHHHHHHHHHHHHhc
Confidence                   00 0      011112222333211111                  01     13456788888888889999


Q ss_pred             CCeEecCceEEEEEeeeccCCCcEEEEe------CCc-----cEEEeCeEEEcCCcChh
Q 015072          167 GAVLRDNTEVKTVLKVKDDVRGGVTVVT------SSG-----EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       167 gv~i~~~~~V~~i~~~~~~~~~~~~v~~------~~g-----~~i~ad~vV~A~G~~~~  214 (413)
                      |++|+..+.|+++..  .++.....+..      ..+     -.++++.||-|||.-+.
T Consensus       123 Gaki~n~~~veDvi~--r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~  179 (262)
T COG1635         123 GAKIFNGVSVEDVIV--RDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAE  179 (262)
T ss_pred             CceeeecceEEEEEE--ecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchH
Confidence            999999999999988  53322222211      111     16899999999998764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.35  E-value=4e-11  Score=116.83  Aligned_cols=192  Identities=15%  Similarity=0.139  Sum_probs=99.8

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (413)
                      |+....++||+|||+|.+|+++|..+ +.|.+|+||||.....+ +++....+.+........      .-...+.++.+
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~g-G~s~~a~gg~~~~~~~~d------~~~~~~~d~~~   72 (543)
T PRK06263          1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKS-GCTVMAEGGYNAVLNPED------SFEKHFEDTMK   72 (543)
T ss_pred             CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCC-ccccccCceEEEeCCCCC------CHHHHHHHHHH
Confidence            55455679999999999999999999 88999999999865322 222222222221111110      00112222221


Q ss_pred             hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      ......  ....+   ..-.+...+.++++...|+++..-....+.. .+.. ...+   ...+ ..+  .....++..|
T Consensus        73 ~~~~~~--d~~lv---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g-~~~~---r~~~-~~~--~~G~~i~~~L  140 (543)
T PRK06263         73 GGAYLN--DPKLV---EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGG-QSFN---RTCY-AGD--RTGHEMMMGL  140 (543)
T ss_pred             HhcCCC--CHHHH---HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCC-eEcC---eEEE-CCC--CCHHHHHHHH
Confidence            110000  00000   0000111233455566676543211100000 0011 0000   0011 111  1235678888


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+.+++.|+++++++.|+++..  +++...+.+.  . .+++  .+.|+.||+|||++..
T Consensus       141 ~~~~~~~gv~i~~~t~v~~Li~--~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        141 MEYLIKERIKILEEVMAIKLIV--DENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             HHHHhcCCCEEEeCeEeeeeEE--eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            8888888999999999999987  6332133332  2 4554  6899999999999764

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.35  E-value=3.8e-10  Score=108.30  Aligned_cols=43  Identities=40%  Similarity=0.549  Sum_probs=38.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~~~~~~s~~~   51 (413)
                      +|+|||||++|+++|+.|+++|  ++|+|+|+.+..||+..+...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~   46 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK   46 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee
Confidence            5999999999999999999987  899999999999887766443

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.35  E-value=9.4e-12  Score=118.63  Aligned_cols=180  Identities=21%  Similarity=0.226  Sum_probs=96.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcCCee
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ||||||+|++|+++|+.++++| .+|+||||.+..++.  +....+.+........ ..........+++.+.+....  
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~--s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--   76 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN--SAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRG--   76 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc--ccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCC--
Confidence            8999999999999999999999 999999999876532  2222232221111000 000000011122222211000  


Q ss_pred             EeeeeeeeeCCCChHHH-------HHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           87 YFKAHQFDMGPSENKSL-------RSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                                ..+.+.+       .+..+++. .++.++...   . .....     ......+.+..+......+++.|
T Consensus        77 ----------~~~~~l~~~~~~~~~~~i~wl~-~~~~~~~~~---~-~~~~~-----~~~~~~~~~~~g~~~g~~l~~~l  136 (439)
T TIGR01813        77 ----------INDPELVRILAEESADAVDWLQ-DGVGARLDD---L-IQLGG-----HSVPRAHRPTGGAGSGAEIVQKL  136 (439)
T ss_pred             ----------CCCHHHHHHHHhccHHHHHHHH-hCCCeeecc---c-cccCC-----cCCCccccCCCCCCCHHHHHHHH
Confidence                      0011111       11222333 222221110   0 00000     00001112223344567889999


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCC--cEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+.+++.|++++++++|++|..  ++++.  ++.+.+.+++  .+.++.||+|+|.++.
T Consensus       137 ~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       137 YKKAKKEGIDTRLNSKVEDLIQ--DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHcCCEEEeCCEeeEeEE--CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            9999999999999999999998  63222  3344444554  4789999999999876

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.34  E-value=4.3e-10  Score=106.45  Aligned_cols=59  Identities=8%  Similarity=0.087  Sum_probs=47.3

Q ss_pred             ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ++...+.+.|.+.+.  +..++++++|++|..  +  ++.+.+.+++|+++++|.||.|+|.+|.
T Consensus       102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       102 VHRADFLDALLKHLP--EGIASFGKRATQIEE--Q--AEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CCHHHHHHHHHHhCC--CceEEcCCEEEEEEe--c--CCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            556677777776653  356788999999988  6  4568888888888999999999999985

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR00275 flavoprotein, HI0933 family

Probab=99.34  E-value=1.9e-11  Score=114.41  Aligned_cols=179  Identities=19%  Similarity=0.202  Sum_probs=101.1

Q ss_pred             EEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEeee
Q 015072           11 IVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKA   90 (413)
Q Consensus        11 vIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (413)
                      +|||||++|+++|+.|+++|++|+|+|+.+..++.....+++.+......  ....       ++.    ..+.......
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~--~~~~-------~~~----~~~~~~~~~~   67 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSC--PTPE-------FVA----YYPRNGKFLR   67 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCC--cchh-------HHH----hcCCCcHHHH
Confidence            69999999999999999999999999998876543322222222111000  0000       000    0000000000


Q ss_pred             eeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeE
Q 015072           91 HQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVL  170 (413)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i  170 (413)
                      ..+  ...   ...+...++...|+++......   +.+|.                 ......+.+.+.+.+++.|+++
T Consensus        68 ~~l--~~~---~~~d~~~~~~~~Gv~~~~~~~g---~~~p~-----------------~~~a~~v~~~L~~~l~~~gv~i  122 (400)
T TIGR00275        68 SAL--SRF---SNKDLIDFFESLGLELKVEEDG---RVFPC-----------------SDSAADVLDALLNELKELGVEI  122 (400)
T ss_pred             HHH--HhC---CHHHHHHHHHHcCCeeEEecCC---EeECC-----------------CCCHHHHHHHHHHHHHHCCCEE
Confidence            000  000   0123334445555543322100   01111                 0123678888999999999999


Q ss_pred             ecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh----------hhhhhhhcCCC-cceeEEEEE
Q 015072          171 RDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV----------GKLVKKISGLE-LPIQAVETS  233 (413)
Q Consensus       171 ~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~----------~~l~~~~~g~~-~p~~~~~~~  233 (413)
                      +++++|+++..  +  ++.+.++++ ++++.+|.||+|+|.++          -.++..+ |.. .|..|....
T Consensus       123 ~~~~~V~~i~~--~--~~~~~v~~~-~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~l-G~~i~~~~P~l~~  190 (400)
T TIGR00275       123 LTNSKVKSIKK--D--DNGFGVETS-GGEYEADKVILATGGLSYPQLGSTGDGYEIAESL-GHTIVPPVPALVP  190 (400)
T ss_pred             EeCCEEEEEEe--c--CCeEEEEEC-CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHC-CCCEecccceEeE
Confidence            99999999987  6  345677764 44699999999999865          2455555 543 345554433

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.34  E-value=6.8e-10  Score=103.99  Aligned_cols=59  Identities=10%  Similarity=-0.092  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-Ccc--EEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-SGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.|.+.+.+.|+.++++.+++.+..  .+ ...+.|+.. +|+  ++++|.||-|.|.+|.
T Consensus       103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~--~~-~~~~~V~~~~~g~~~~i~adlvIGADG~~S~  164 (390)
T TIGR02360       103 TEVTRDLMEAREAAGLTTVYDADDVRLHD--LA-GDRPYVTFERDGERHRLDCDFIAGCDGFHGV  164 (390)
T ss_pred             HHHHHHHHHHHHhcCCeEEEeeeeEEEEe--cC-CCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence            45667777777778889988888877754  32 233444443 564  6899999999999885

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.34  E-value=1.5e-09  Score=103.91  Aligned_cols=41  Identities=32%  Similarity=0.478  Sum_probs=37.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~   49 (413)
                      +|+|||||++|+++|++|+++|++|+|+|+.+..||...+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~   41 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSW   41 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeee
Confidence            48999999999999999999999999999999888766553

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.34  E-value=1.2e-11  Score=105.11  Aligned_cols=65  Identities=26%  Similarity=0.378  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ...+.+++.+.+++.+++++++++|+++..  +  ++.|.|++.+++++.|++||+|+|.++.+..+.+
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~--~--~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~  145 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRR--D--GDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI  145 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEE--E--TTTEEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEE--e--ccEEEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence            356777888888888999999999999999  7  4569999999977999999999998766544444

...

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.34  E-value=5.4e-11  Score=97.17  Aligned_cols=140  Identities=25%  Similarity=0.222  Sum_probs=79.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|++|++.|+||+|+|++...|+.....+   .+.+.                           
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg---~lf~~---------------------------   65 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG---MLFNK---------------------------   65 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C---TT------------------------------
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc---cccch---------------------------
Confidence            468999999999999999999999999999999877654322221   11000                           


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                             +.+.. ..   ..   .+...+++++                  +...++     .+.|+..+...|...+.+
T Consensus        66 -------iVVq~-~a---~~---iL~elgi~y~------------------~~~~g~-----~v~d~~~~~s~L~s~a~~  108 (230)
T PF01946_consen   66 -------IVVQE-EA---DE---ILDELGIPYE------------------EYGDGY-----YVADSVEFTSTLASKAID  108 (230)
T ss_dssp             -------EEEET-TT---HH---HHHHHT---E------------------E-SSEE-----EES-HHHHHHHHHHHHHT
T ss_pred             -------hhhhh-hH---HH---HHHhCCceeE------------------EeCCeE-----EEEcHHHHHHHHHHHHhc
Confidence                   00000 00   01   1111222111                  000111     335778888888888888


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEe------CCc-----cEEEeCeEEEcCCcChh
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVT------SSG-----EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~------~~g-----~~i~ad~vV~A~G~~~~  214 (413)
                      .|++++..+.|+++..  .+++....+..      ..|     -.++++.||-|||.-+.
T Consensus       109 aGakifn~~~vEDvi~--r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen  109 AGAKIFNLTSVEDVIV--REDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             TTEEEEETEEEEEEEE--ECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred             CCCEEEeeeeeeeeEE--EcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence            9999999999999988  53222222221      122     16999999999998654

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.33  E-value=3.6e-10  Score=110.09  Aligned_cols=59  Identities=25%  Similarity=0.405  Sum_probs=45.0

Q ss_pred             eecHHHHHHHHHHHHHHcCC-eEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          149 VIKPTKAVSMFQTLAIKNGA-VLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv-~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.-..+.+.|.+.+   +. .++++++|++++.  +  ++.+.+.+++|+++.+|.||.|.|.++.
T Consensus       190 ~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~--~--~d~VtV~~~dG~ti~aDlVVGADG~~S~  249 (668)
T PLN02927        190 VISRMTLQQILARAV---GEDVIRNESNVVDFED--S--GDKVTVVLENGQRYEGDLLVGADGIWSK  249 (668)
T ss_pred             EEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEE--e--CCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence            445566666665443   33 3677889999988  6  4678888888888999999999999995

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.33  E-value=6.4e-11  Score=116.47  Aligned_cols=191  Identities=13%  Similarity=0.124  Sum_probs=101.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHH-HHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESS-LLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   84 (413)
                      .++||+|||+|.+|+++|+.+++.|.+|+||||....++  ++....|.+........     .++. ..+.+..+....
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g--~t~~a~Ggi~a~~~~~~-----~Ds~e~~~~D~~~~g~~  100 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS--HTVAAQGGINAALGNMT-----EDDWRWHAYDTVKGSDW  100 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC--CchhhcCCeeEEecCCC-----CCCHHHHHHHHHHHhCC
Confidence            468999999999999999999999999999999877543  22222333322111000     0011 111122111000


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCC-----CCeEEEEecCCeeecHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIP-----ENWVGVTTELGGVIKPTKAVSM  158 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                       . .....+.   .-.+...+.++++.++|+++.......+.. .+.. ....     ......+. .+  -....+++.
T Consensus       101 -~-~d~~lv~---~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~~~~~~~~r~~~~-~d--~tG~~i~~~  171 (617)
T PTZ00139        101 -L-GDQDAIQ---YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGG-QSLKFGKGGQAYRCAAA-AD--RTGHAMLHT  171 (617)
T ss_pred             -C-CCHHHHH---HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCc-ccccccCCCccceeeec-CC--CcHHHHHHH
Confidence             0 0000000   000112344566667777664322111100 1111 0000     00000111 00  023578889


Q ss_pred             HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072          159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      |.+.+++.|++++.++.++++..  ++++....+   ...+|+  .+.|+.||+|||++..
T Consensus       172 L~~~a~~~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  230 (617)
T PTZ00139        172 LYGQSLKYDCNFFIEYFALDLIM--DEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHhCCCEEEeceEEEEEEE--CCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence            99989889999999999999886  422333333   224565  6889999999999865

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.32  E-value=4.3e-11  Score=113.09  Aligned_cols=184  Identities=13%  Similarity=0.133  Sum_probs=94.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||+|.+|+++|..++ .|.+|+||||....++  .+....+.+.......       ....++++..+.....
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg--~s~~a~ggi~~~~~~d-------~~~~~~~d~~~~g~~~   72 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC--NTYLAQGGISVARNKD-------DITSFVEDTLKAGQYE   72 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC--chHHHhHhheeCCCCC-------CHHHHHHHHHHHhCCC
Confidence            5699999999999999999985 6999999999877643  2222222222111111       1112222222211000


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      .  ....+..   -.+...+..+++...|+++..-.........+.     ......+.+.+  .....+++.|.+.+.+
T Consensus        73 ~--d~~lv~~---~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~-----~~~~r~~~~~~--~~g~~l~~~L~~~~~~  140 (433)
T PRK06175         73 N--NLEAVKI---LANESIENINKLIDMGLNFDKDEKELSYTKEGA-----HSVNRIVHFKD--NTGKKVEKILLKKVKK  140 (433)
T ss_pred             C--CHHHHHH---HHHHHHHHHHHHHHcCCccccCCCceeeeccCc-----cccCeEEecCC--CChHHHHHHHHHHHHh
Confidence            0  0000000   001113344555666665432110000000000     00001111111  1235678888877765


Q ss_pred             -cCCeEecCceEEEEEeeeccCCCcEEEE-eCCcc--EEEeCeEEEcCCcChh
Q 015072          166 -NGAVLRDNTEVKTVLKVKDDVRGGVTVV-TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 -~gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                       .|++|+++++|++|..  +++ ..+.+. ..+++  .+.|+.||+|||.+..
T Consensus       141 ~~gV~i~~~t~v~~Li~--~~~-~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        141 RKNITIIENCYLVDIIE--NDN-TCIGAICLKDNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             cCCCEEEECcEeeeeEe--cCC-EEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence             4899999999999987  632 333322 22333  5899999999998763

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.31  E-value=1.5e-10  Score=113.57  Aligned_cols=192  Identities=15%  Similarity=0.130  Sum_probs=100.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   84 (413)
                      .++||+|||+|.+|+++|+.+++.|.+|+||||....++  ++....|.+.......  .   .++.+ .+.+..+... 
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g--~s~~a~Ggi~a~~~~~--~---~Ds~e~~~~d~~~~g~-   82 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS--HTVAAQGGISASLGNM--G---EDDWRWHMYDTVKGSD-   82 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc--chhhhcCCcccccCCC--C---CCCHHHHHHHHHHhcc-
Confidence            468999999999999999999999999999999876543  2222222222111100  0   00000 1111111100 


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCC-----CCeEEEEecCCeeecHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIP-----ENWVGVTTELGGVIKPTKAVSM  158 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                      .. .....+..   -.+...+.++++..+|+++......... ..++. ....     ......+. .+  -....++..
T Consensus        83 ~~-~d~~lv~~---l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg-~~~~~~~~~~~~R~~~~-~d--~tG~~i~~~  154 (598)
T PRK09078         83 WL-GDQDAIEY---MCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGG-MTTNYGKGPPAQRTCAA-AD--RTGHAILHT  154 (598)
T ss_pred             CC-CCHHHHHH---HHHHHHHHHHHHHHcCCcceecCCCceeecccCc-eecccCCCCccceeEec-CC--CCHHHHHHH
Confidence            00 00000000   0011133445566677765432111110 01111 0000     00001111 11  123568888


Q ss_pred             HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChhh
Q 015072          159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~~  215 (413)
                      |.+.+.+.|+++++++.|++|..  ++++..+.|.   ..+|+  .+.|+.||+|||.+...
T Consensus       155 L~~~~~~~gi~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        155 LYQQSLKHNAEFFIEYFALDLIM--DDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             HHHHHhhcCCEEEEeEEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence            88888889999999999999988  6322233332   34565  68999999999998764

>PLN02612 phytoene desaturase

Probab=99.31  E-value=3.6e-09  Score=103.39  Aligned_cols=59  Identities=14%  Similarity=0.066  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..++..|.+.+++.|++|+++++|++|..  ++++..+.+.+.+|+++.+|+||+|+....
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~  366 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSVVEGDVYVSATPVDI  366 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcEEECCEEEECCCHHH
Confidence            56788888888889999999999999998  643334557777888899999999997643

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.31  E-value=1.4e-11  Score=121.05  Aligned_cols=179  Identities=16%  Similarity=0.166  Sum_probs=96.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||+|.+|+++|..+++.  |.+|+||||....++...+.+.. .+........      .-...++.+.+...
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~-~~~~~~~~~d------s~e~~~~d~~~~~~   82 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLS-AINAYIGEGE------TPEDYVRYVRKDLM   82 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCcc-ccccccccCC------CHHHHHHHHHHhcc
Confidence            358999999999999999999998  99999999987643221111110 1111111100      00112222221110


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                       .. .....+..   -.+...+.++++...|+++.......   .++.      ..      .....++..+.+.|.+.+
T Consensus        83 -~~-~d~~lv~~---~~~~s~~~i~~L~~~Gv~f~~~~~G~---~~~~------g~------~~~~~~G~~~~~~L~~~a  142 (608)
T PRK06854         83 -GI-VREDLVYD---IARHVDSVVHLFEEWGLPIWKDENGK---YVRR------GR------WQIMINGESYKPIVAEAA  142 (608)
T ss_pred             -CC-CCHHHHHH---HHHhHHHHHHHHHHcCCeeeecCCCC---cccc------CC------ccCCCChHHHHHHHHHHH
Confidence             00 00000000   00111344555666676543211000   0000      00      000134567788888888


Q ss_pred             HHcC-CeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072          164 IKNG-AVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ++.+ ++++.++.|+++..  +++ ..+.+   ...+++  .+.|+.||+|||+++.
T Consensus       143 ~~~ggV~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        143 KKALGDNVLNRVFITDLLV--DDN-RIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             HhcCCCEEEeCCEEEEEEE--eCC-EEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            7775 99999999999987  532 22222   234554  6899999999999875

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.31  E-value=8.6e-11  Score=114.18  Aligned_cols=188  Identities=14%  Similarity=0.127  Sum_probs=99.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||+|++|+++|..+++.|.+|+||||....++  ++....|.+........      .-...+.++.+..+..
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~d------s~e~~~~d~~~~g~g~   86 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG--STRWAQGGIAAVLDPGD------SPEAHVADTLVAGAGL   86 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC--chhhhccceeeccCCCC------CHHHHHHHHHHhcCCC
Confidence            468999999999999999999999999999999987643  33322233322111110      0011222222211100


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .  ....+..   -.+...+.++++...|+++..-....+. ..+.. .    ........ .+-.....+.+.|.+.++
T Consensus        87 ~--d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g-~----~~~r~~~~-~~d~~G~~i~~~L~~~~~  155 (541)
T PRK07804         87 C--DPDAVRS---LVAEGPRAVRELVALGARFDESPDGRWALTREGG-H----SRRRIVHA-GGDATGAEVQRALDAAVR  155 (541)
T ss_pred             C--CHHHHHH---HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCC-e----ecCeeEec-CCCCCHHHHHHHHHHHHH
Confidence            0  0000000   0001123345556667654321111000 00000 0    00001111 011134678888989888


Q ss_pred             HcCCeEecCceEEEEEeeeccCCC--cEEEE-----eCCc-cEEEeCeEEEcCCcChh
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRG--GVTVV-----TSSG-EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~-----~~~g-~~i~ad~vV~A~G~~~~  214 (413)
                      +.|++++.++.|+++..  ++++.  ++.+.     ..++ ..+.|+.||+|||.++.
T Consensus       156 ~~gV~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        156 ADPLDIREHALALDLLT--DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             hCCCEEEECeEeeeeEE--cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            88999999999999987  63222  23333     2333 26899999999999874

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.31  E-value=3.3e-11  Score=115.27  Aligned_cols=63  Identities=22%  Similarity=0.272  Sum_probs=50.2

Q ss_pred             eeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.+|...+.+.+.+.+.+. |++++ ++.|+++..  ++ +....|.+.+|..+.|+.||+|||.|.+
T Consensus        95 aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~--e~-grV~GV~t~dG~~I~Ak~VIlATGTFL~  158 (618)
T PRK05192         95 AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV--EN-GRVVGVVTQDGLEFRAKAVVLTTGTFLR  158 (618)
T ss_pred             HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe--cC-CEEEEEEECCCCEEECCEEEEeeCcchh
Confidence            4678888999998888765 78886 678999887  52 2445677888888999999999998763

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.31  E-value=1.1e-10  Score=114.00  Aligned_cols=188  Identities=12%  Similarity=0.067  Sum_probs=98.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   84 (413)
                      .++||+|||+|.+|+++|..+++.|.+|+||||....++  .+....|.+.......  ... ..+.+ .+.+..+. +.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g--~s~~a~Ggi~~~~~~~--~~~-~Ds~e~~~~d~~~~-g~   77 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS--HSAAAEGGIAAYIPGN--SDP-NDNPDYMTYDTVKG-GD   77 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC--cchhhccchhhhcccc--CCC-cccHHHHHHHHHHh-hc
Confidence            468999999999999999999999999999999876543  2222222222111000  000 01111 11111111 10


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      .. .....+   ..-.+...+.++++..+|+++..-....+ ...++. ..   .....+.. +  -....+++.|.+.+
T Consensus        78 ~~-~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~---~~r~~~~~-~--~~G~~i~~~L~~~~  146 (566)
T PRK06452         78 YL-VDQDAA---ELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGG-QT---YPRTRFVG-D--KTGMALLHTLFERT  146 (566)
T ss_pred             cC-CCHHHH---HHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcC-cc---CCeeEecC-C--CCHHHHHHHHHHHH
Confidence            00 000000   00001113445566667776533211110 011111 00   00111111 0  12356778888888


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcCh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWV  213 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~  213 (413)
                      .+.|+++++++.++++..  +++ ..+.+.  . .+++  .+.|+.||+|||++.
T Consensus       147 ~~~gv~i~~~~~~~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        147 SGLNVDFYNEWFSLDLVT--DNK-KVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HhCCCEEEeCcEEEEEEE--ECC-EEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            888999999999999998  632 333333  3 2343  688999999999876

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.30  E-value=1.6e-09  Score=104.34  Aligned_cols=46  Identities=30%  Similarity=0.374  Sum_probs=40.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCCCCCCCc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~----g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      .||+|||||++|+++|++|+++    |++|+|+|+.+..||+..+....|
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g   52 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDG   52 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCC
Confidence            6899999999999999999999    999999999999988877654444

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR00551 nadB L-aspartate oxidase

Probab=99.30  E-value=1.1e-10  Score=112.40  Aligned_cols=184  Identities=16%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ++||+|||+|++|+++|+.+++.|. |+||||.+..++  ++....|.+.........      -...+.++.+..... 
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g--~s~~a~Ggi~~~~~~~ds------~e~~~~d~~~~~~~~-   71 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG--NSFYAQGGIAAVLAETDS------IDSHVEDTLAAGAGI-   71 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC--cchhcCcCeeeeecCCCC------HHHHHHHHHHhcCCc-
Confidence            5899999999999999999999997 999999976543  332222333222111110      011222222211000 


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                       .....+..   -.+...+.++++...|+++.......... .+..     ......+..  +......+.+.|.+.+++
T Consensus        72 -~d~~~v~~---~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-----~~~~r~~~~--~~~~G~~l~~~L~~~~~~  140 (488)
T TIGR00551        72 -CDREAVEF---VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGG-----HSYRRILHA--ADATGREVITTLVKKALN  140 (488)
T ss_pred             -CCHHHHHH---HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCC-----cCCCeEEEe--CCCCHHHHHHHHHHHHHh
Confidence             00000000   00111334556666777653222111100 0111     000011111  112346788888888887


Q ss_pred             -cCCeEecCceEEEEEeeeccCCCcEEE--EeCCc-cEEEeCeEEEcCCcChh
Q 015072          166 -NGAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSG-EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 -~gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g-~~i~ad~vV~A~G~~~~  214 (413)
                       .|+++++++.|++|..  +++ ....+  ...++ ..+.++.||+|||+++.
T Consensus       141 ~~gi~i~~~~~v~~l~~--~~g-~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       141 HPNIRIIEGENALDLLI--ETG-RVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             cCCcEEEECeEeeeeec--cCC-EEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence             6999999999999987  632 22223  32222 26899999999999986

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.30  E-value=1.7e-10  Score=113.47  Aligned_cols=192  Identities=12%  Similarity=0.136  Sum_probs=100.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHH-HHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESS-LLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   84 (413)
                      .++||+|||+|++|+++|+.+++.|.+|+||||....++  ++....|.+........     .++. ..+.+..+....
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g--~s~~a~Ggi~a~~~~~~-----~Ds~e~~~~Dt~~~g~~  121 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS--HTVAAQGGINAALGNMT-----EDDWRWHMYDTVKGSDW  121 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC--chHHhhcCceeecCCCC-----CCCHHHHHHHHHHhhCC
Confidence            468999999999999999999999999999999876543  22222222221111000     0111 111222111000


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCC-----CeEEEEecCCeeecHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPE-----NWVGVTTELGGVIKPTKAVSM  158 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  158 (413)
                       . .....+..   -.+...+.++++...|+++.......+. ..+.. .....     .....+ .  .--....+++.
T Consensus       122 -~-~d~~lv~~---l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg-~s~~~~~~g~~~r~~~-~--~d~tG~~i~~~  192 (635)
T PLN00128        122 -L-GDQDAIQY---MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGG-QSLDFGKGGQAYRCAC-A--ADRTGHAMLHT  192 (635)
T ss_pred             -C-CCHHHHHH---HHHhHHHHHHHHHhCCCccccCCCCceeeccccc-cccccCCCcceeeeec-c--CCCCHHHHHHH
Confidence             0 00000000   0011133455666677765322111110 11111 00000     000001 0  00123568888


Q ss_pred             HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChhh
Q 015072          159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~~  215 (413)
                      |.+.+.+.|++++.++.+++|..  ++++..+.+.  . .+|+  .+.|+.||+|||++...
T Consensus       193 L~~~a~~~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        193 LYGQAMKHNTQFFVEYFALDLIM--DSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             HHHHHHhCCCEEEEeeEEEEEEE--cCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence            88888888999999999999887  5222333332  2 3554  68999999999998753

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.30  E-value=6.7e-11  Score=115.98  Aligned_cols=41  Identities=32%  Similarity=0.377  Sum_probs=36.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~   45 (413)
                      ..++||+|||+|++|+++|+.++++|.+|+||||....++.
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~   47 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT   47 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence            34799999999999999999999999999999999876543

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.30  E-value=1.6e-11  Score=120.23  Aligned_cols=188  Identities=13%  Similarity=0.119  Sum_probs=97.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ++||+|||||++|+++|+.+++.  |.+|+||||....++  .+....|.+........... ..+  ..+....+. +.
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg--~s~~a~GGi~a~~~~~~~~d-s~e--~~~~d~~~~-~~   76 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS--HSVAAQGGIAASLKNVDPED-SWE--AHAFDTVKG-SD   76 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch--hhHHhccchhhhccCCCCCC-CHH--HHHHHHHHH-hC
Confidence            58999999999999999999987  489999999876542  22212222221111000000 000  011111111 00


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      .. .....+..   -.+...+.+.++...|+++.......+. ..+.. .   ......+. .+  .....++..|.+.+
T Consensus        77 ~l-~d~~~v~~---l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~---~~~r~~~~-~~--~tG~~i~~~L~~~~  145 (575)
T PRK05945         77 YL-ADQDAVAI---LTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGG-H---SHNRTCYA-AD--KTGHAILHELVNNL  145 (575)
T ss_pred             CC-CCHHHHHH---HHHHHHHHHHHHHHcCCceEECCCCcEeeccccc-c---ccCeeEec-CC--CChHHHHHHHHHHH
Confidence            00 00000000   0001123344556667665433211110 00111 0   00011111 11  12357888888888


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+.|+++++++.|+++..  +++ ....+   ...+++  .+.|+.||+|||+++.
T Consensus       146 ~~~gi~i~~~t~v~~L~~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        146 RRYGVTIYDEWYVMRLIL--EDN-QAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             hhCCCEEEeCcEEEEEEE--ECC-EEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            888999999999999987  532 22222   334554  5899999999999875

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.30  E-value=2.2e-10  Score=112.21  Aligned_cols=197  Identities=16%  Similarity=0.147  Sum_probs=102.8

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (413)
                      |+.-..++||+|||+|.+|+++|..+++.|.+|+||||....++  ++....|.+.......    ....-...+.+..+
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g--~t~~a~Ggi~a~~~~~----~~Ds~e~~~~D~~~   74 (588)
T PRK08958          1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS--HTVSAQGGITVALGNT----HEDNWEWHMYDTVK   74 (588)
T ss_pred             CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC--ccHHhhhhHhhhcCCC----CCCCHHHHHHHHHH
Confidence            43334578999999999999999999999999999999876543  2222222221111100    00000111222211


Q ss_pred             hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCC----CCeEEEEecCCeeecHHHH
Q 015072           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIP----ENWVGVTTELGGVIKPTKA  155 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~  155 (413)
                      ... .. .....+..   -.+...+.++++...|+++......... ..++. ....    ......+.. +  -....+
T Consensus        75 ~g~-~~-~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~~~~~~~~~~r~~~~~-~--~~G~~i  145 (588)
T PRK08958         75 GSD-YI-GDQDAIEY---MCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGG-QSKNFGGEQAARTAAAA-D--RTGHAL  145 (588)
T ss_pred             HhC-CC-CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCceeeccccc-ccccccccccceeEecC-C--CCHHHH
Confidence            100 00 00000000   0011134456666777766432111110 01111 0000    000111111 1  123567


Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +..|.+.+.+.|+++++++.++++..  ++++..+.+.   ..+|+  .+.|+.||+|||++..
T Consensus       146 ~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  207 (588)
T PRK08958        146 LHTLYQQNLKNHTTIFSEWYALDLVK--NQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_pred             HHHHHHHhhhcCCEEEeCcEEEEEEE--CCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            88888888888999999999999987  5323333332   34554  5889999999999875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.29  E-value=4e-11  Score=118.50  Aligned_cols=195  Identities=17%  Similarity=0.204  Sum_probs=99.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ..++||+|||+|.+|+++|..++++|.+|+||||.+..++  +|....|.+........ ......-...+.+..+....
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s--~s~~a~GGi~a~~g~~~-~g~~Ds~e~~~~Dt~k~~~~   79 (657)
T PRK08626          3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS--HSAAAQGGMQASLGNAV-KGEGDNEDVHFADTVKGSDW   79 (657)
T ss_pred             ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc--chHHHhhhHHhhccccc-cCCCCCHHHHHHHHHHhcCC
Confidence            3569999999999999999999999999999999877542  22222222211110000 00000011122333222111


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHH---------HHH-----HhcCCcccCCCCeE------EEEe
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR---------QVL-----QKYSGRIEIPENWV------GVTT  144 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~---------~~~-----~~~p~~~~~~~~~~------~~~~  144 (413)
                      .+.......     -.....+.++++...|+++......         ...     +..+. +.. ..+.      ..+.
T Consensus        80 ~~D~~~vr~-----~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~-i~~-r~~GG~~~~R~~~~  152 (657)
T PRK08626         80 GCDQEVARM-----FVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGL-INA-RDFGGTKKWRTCYT  152 (657)
T ss_pred             CCCHHHHHH-----HHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccc-ccc-ccccccccceeEec
Confidence            110000000     0001123344555566654322100         000     00000 000 0111      1111


Q ss_pred             cCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEe-CCcc--EEEeCeEEEcCCcChh
Q 015072          145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVT-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      . ++  ....++..|.+.+.+.|++++.++.|++|..  +++. .++.+.+ .+|+  .+.|+.||+|||++..
T Consensus       153 ~-d~--tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~--~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~  221 (657)
T PRK08626        153 A-DG--TGHTMLYAVDNEAIKLGVPVHDRKEAIALIH--DGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR  221 (657)
T ss_pred             C-CC--cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence            1 11  1245667788888889999999999999998  6321 2344443 4665  5789999999998875

>PRK07236 hypothetical protein; Provisional

Probab=99.29  E-value=8.5e-11  Score=110.18  Aligned_cols=55  Identities=11%  Similarity=-0.026  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.|.+.+  .+++++++++|++++.  +  ++.+.++.++|+++++|.||.|.|.+|.
T Consensus       101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236        101 VLYRALRAAF--PAERYHLGETLVGFEQ--D--GDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             HHHHHHHHhC--CCcEEEcCCEEEEEEe--c--CCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            3444444432  3467999999999988  6  4567888888888999999999999885

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.28  E-value=1.6e-11  Score=116.32  Aligned_cols=65  Identities=14%  Similarity=0.068  Sum_probs=50.3

Q ss_pred             CCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .+.++|...+-+.|.+.+++.|++++.+ .|+++..  ++++....|++.+|++++||.||-|+|..+
T Consensus       147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~--~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  147 YAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVEL--DEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE---TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             eeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEE--cCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            4577899999999999999999999876 5888887  643345678888999999999999999755

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.28  E-value=5.9e-11  Score=112.42  Aligned_cols=67  Identities=22%  Similarity=0.164  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHcCCe--EecCceEEEEEeeeccCCCcEEEEeCCc--c--EEEeCeEEEcCCcChhhhhhhhcC
Q 015072          152 PTKAVSMFQTLAIKNGAV--LRDNTEVKTVLKVKDDVRGGVTVVTSSG--E--EFWGKKCVVTAGAWVGKLVKKISG  222 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~--i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~--~i~ad~vV~A~G~~~~~l~~~~~g  222 (413)
                      ..++.++|.+.+...|+.  |+++++|++|..  .  ++.|.|++.++  .  +..+|+||+|+|.++.+..+.+.|
T Consensus       110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~--~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG  182 (461)
T PLN02172        110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEP--V--DGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPG  182 (461)
T ss_pred             HHHHHHHHHHHHHHcCCcceEEecCEEEEEee--c--CCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCC
Confidence            367888888888888887  889999999998  6  46788876532  2  457899999999887655555434

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.28  E-value=7.9e-10  Score=98.60  Aligned_cols=37  Identities=30%  Similarity=0.512  Sum_probs=33.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      +.+|+|||||++|+++|..|.++|++|+|+|+...+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R   38 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR   38 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence            3679999999999999999999999999999976653

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.28  E-value=1.4e-10  Score=114.42  Aligned_cols=193  Identities=18%  Similarity=0.151  Sum_probs=95.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||+|.+|+++|..+++.|.+|+||||....++ +++....|.+.......   .....-...+.+..+.....
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~-g~s~~a~GGi~a~~~~~---~~~Ds~~~~~~d~~~~g~~~  109 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR-AHSIAAQGGINAAKNYQ---NDGDSVYRLFYDTVKGGDFR  109 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc-chhHHhhhchHhHhhcc---ccCCCHHHHHHHHHHhcCCC
Confidence            468999999999999999999999999999998655432 22222222221111000   00000111222222211000


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecC-CeeecHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTEL-GGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~  163 (413)
                      .  ....+..   -.+...+.++++...|+++..-....+ ...++. ..   .....+... .+..--..+.+.|.+.+
T Consensus       110 ~--d~~lv~~---l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gg-hs---~~R~~~~~~~tG~~i~~~l~~~L~~~~  180 (640)
T PRK07573        110 A--REANVYR---LAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGG-AQ---VSRTFYARGQTGQQLLLGAYQALSRQI  180 (640)
T ss_pred             C--CHHHHHH---HHHHHHHHHHHHHhcCCccccCCCCceeccccCC-cc---cceeEeCCCCCchhHHHHHHHHHHHHH
Confidence            0  0000000   001113455666677776532110000 001111 00   001111110 11000012235566677


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ++.|++|++++.|++|..  +++ ..+.|.  . .+|+  .+.|+.||+|||+++.
T Consensus       181 ~~~gV~i~~~t~v~~Li~--d~g-~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~  233 (640)
T PRK07573        181 AAGTVKMYTRTEMLDLVV--VDG-RARGIVARNLVTGEIERHTADAVVLATGGYGN  233 (640)
T ss_pred             HhcCCEEEeceEEEEEEE--eCC-EEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence            788999999999999987  632 333333  2 2454  6899999999999875

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.27  E-value=3e-09  Score=98.57  Aligned_cols=50  Identities=28%  Similarity=0.329  Sum_probs=42.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCCCCcceecc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRAT   58 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~~~~~~s~~~~~~~~~~   58 (413)
                      .|+|||||++||++||+|++++  .+|+|+|+++..||...|....|.....
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~   53 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFER   53 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEee
Confidence            4999999999999999999998  8999999999998887777655554433

>PRK08275 putative oxidoreductase; Provisional

Probab=99.27  E-value=1.1e-10  Score=113.90  Aligned_cols=191  Identities=13%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHH
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQA   78 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (413)
                      |+....++||+|||+|.+|+++|..+++.  |.+|+||||....++...+.+..+ +....... .    .....++.++
T Consensus         3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g-~~~~~~~~-~----d~~~~~~~d~   76 (554)
T PRK08275          3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDG-LNNAVIPG-H----ATPEQYTKEI   76 (554)
T ss_pred             CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhh-HhhhhccC-C----CCHHHHHHHH
Confidence            44334568999999999999999999987  689999999886432211111111 11100000 0    0011122222


Q ss_pred             HHhcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCe-EEEEecCCeeecHHHHHH
Q 015072           79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENW-VGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~  157 (413)
                      .+... .. .....+..   -.+...+.++++...|+++.......        +...... .+.+..  ..-....+.+
T Consensus        77 ~~~~~-~~-~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~--------~~~~~~~~~~~~~~--~~~~G~~i~~  141 (554)
T PRK08275         77 TIAND-GI-VDQKAVYA---YAEHSFETIQQLDRWGVKFEKDETGD--------YAVKKVHHMGSYVL--PMPEGHDIKK  141 (554)
T ss_pred             HHhcC-CC-ccHHHHHH---HHHhhHHHHHHHHHCCCeeEeCCCCC--------EeeecccccCcccc--cCCChHHHHH
Confidence            21110 00 00000000   00011334555666676553221110        0000000 000000  0012346788


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .|.+.+++.|+++++++.|++|..  ++++....+.   ..+|+  .+.|+.||+|||+++.
T Consensus       142 ~L~~~~~~~gv~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        142 VLYRQLKRARVLITNRIMATRLLT--DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHHCCCEEEcceEEEEEEE--cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            888888889999999999999987  6222223332   34554  5899999999999764

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.27  E-value=2e-10  Score=112.62  Aligned_cols=187  Identities=16%  Similarity=0.144  Sum_probs=100.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhc
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEI   82 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   82 (413)
                      |..++||+|||+|++|+++|+.+++. .+|+|+||....++  ++....|.+........     .++.+ .+.+..+. 
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~~-----~D~~e~~~~d~~~~-   72 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS--HTGAAQGGMCAALANVE-----EDNWEWHTFDTVKG-   72 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC--CchhhhcchhhcccCCC-----CCCHHHHHHHHHHh-
Confidence            34579999999999999999999986 89999999876542  22222222221111000     00011 11111111 


Q ss_pred             CCeeEeeeeeeeeCCCC-----hHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCC----CCeEEEEecCCeeecH
Q 015072           83 GYKVYFKAHQFDMGPSE-----NKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIP----ENWVGVTTELGGVIKP  152 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~----~~~~~~~~~~~~~~~~  152 (413)
                      +..         ....+     .+...+.++++..+|+++........ ...++. ....    ......+.. +  ...
T Consensus        73 g~~---------~~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~~~~~~~r~~~~~-~--~tG  139 (583)
T PRK08205         73 GDY---------LVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGG-HTRDHGKAPVRRACYAA-D--RTG  139 (583)
T ss_pred             hcC---------CCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCceeeccccc-ccccccCCCccceeccC-C--CCH
Confidence            100         00000     01123345666777876543221111 111121 0000    000011110 0  124


Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccC---CCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV---RGGVTV---VTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~---~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ..+++.|.+.+.+.|+++++++.|++|..  +++   +....+   ...+++  .+.|+.||+|||.++.
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~--~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  207 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLL--TETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe--cCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence            67888898888889999999999999987  531   223333   224554  5899999999999874

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.26  E-value=1.5e-10  Score=113.42  Aligned_cols=66  Identities=23%  Similarity=0.321  Sum_probs=51.2

Q ss_pred             CeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEeCCcc-EEEe-CeEEEcCCcChh
Q 015072          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE-EFWG-KKCVVTAGAWVG  214 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~-~i~a-d~vV~A~G~~~~  214 (413)
                      ....++..+++.|.+.+++.|++|+++++|++|..  +++. .++.+...++. ++++ +.||+|+|.|+.
T Consensus       211 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~--~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        211 MHLVNGNALVARLLKSAEDLGVRIWESAPARELLR--EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             CcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            34567788999999999999999999999999988  6321 12344444554 5889 999999999986

>PRK07208 hypothetical protein; Provisional

Probab=99.25  E-value=5.5e-10  Score=107.88  Aligned_cols=49  Identities=29%  Similarity=0.358  Sum_probs=42.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      ++..||+|||||++|+++|++|+++|++|+|+|+.+..||...+....+
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g   50 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG   50 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC
Confidence            4467999999999999999999999999999999999888766644333

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.25  E-value=1.5e-10  Score=111.92  Aligned_cols=43  Identities=35%  Similarity=0.481  Sum_probs=37.5

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      |+.-..++||||||+| +|+++|+++++.|.+|+||||....++
T Consensus         1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            5444457999999999 999999999999999999999887654

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.25  E-value=5.7e-11  Score=117.14  Aligned_cols=189  Identities=14%  Similarity=0.103  Sum_probs=97.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||+|++|+++|..+++.|.+|+||||....++  +|....|.+..........   ..-...+.+..+.... 
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~~~~~~---ds~~~~~~D~~~~g~~-   80 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA--HTVMAEGGCAAAMGNVNPK---DNWQVHFRDTMRGGKF-   80 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC--cceecCccceeeccCCCCC---CCHHHHHHHHHHHhcc-
Confidence            468999999999999999999999999999999876542  3333333332221110000   0001111111111000 


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      . .....+..   -.+...+.+.++...|+++.......+.. .+.. ..    +.......  -.....++..|.+.+.
T Consensus        81 l-~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~----~~r~~~~~--~~tG~~i~~~L~~~~~  149 (626)
T PRK07803         81 L-NNWRMAEL---HAKEAPDRVWELETYGALFDRTKDGRISQRNFGG-HT----YPRLAHVG--DRTGLELIRTLQQKIV  149 (626)
T ss_pred             C-CcHHHHHH---HHHHhHHHHHHHHHCCCceEecCCCceeeeecCC-cc----cCeEEecC--CCcHHHHHHHHHHHHH
Confidence            0 00000000   00011223345566777654322111100 1111 00    00011110  1123567788888776


Q ss_pred             Hc--------C-----CeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072          165 KN--------G-----AVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~--------g-----v~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +.        |     ++++.++.|+++..  +++ ..+.+   ...+++  .+.|+.||+|||++..
T Consensus       150 ~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~--~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~  214 (626)
T PRK07803        150 SLQQEDHAELGDYEARIKVFAECTITELLK--DGG-RIAGAFGYWRESGRFVLFEAPAVVLATGGIGK  214 (626)
T ss_pred             hhhccccccccCCcCceEEEeCCEEEEEEE--ECC-EEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence            66        6     99999999999987  632 22222   234554  6899999999998654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.25  E-value=2.9e-10  Score=109.18  Aligned_cols=58  Identities=21%  Similarity=0.215  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|++++.+++|+++..  +  ++.+.+++.+|+++.+|.||+|+|...+
T Consensus       216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        216 DEISDALSYHLRDSGVTIRHNEEVEKVEG--G--DDGVIVHLKSGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEECCEEEEEEE--e--CCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence            45667788888889999999999999987  5  3456666777778999999999998754

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.25  E-value=2.6e-10  Score=111.96  Aligned_cols=185  Identities=17%  Similarity=0.130  Sum_probs=96.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhcCCeeE
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEIGYKVY   87 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   87 (413)
                      ||+|||+|++|+++|+.+++.|.+|+||||....++  .+....|.+.........    ..+.+ .+.+........  
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g--~s~~a~Gg~~~~~~~~~~----~d~~e~~~~d~~~~~~~~--   72 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS--HTVAAQGGMAAALGNVDP----DDSWEWHAYDTVKGSDYL--   72 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--cchhhccCeEeecCCCCC----CccHHHHHHHHHHHhCCC--
Confidence            899999999999999999999999999999876532  222222222211110000    00001 111111110000  


Q ss_pred             eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                      .....+..   -.+...+.++++...|+++......... ..+.. .   ......+...   .....+...|.+.+++.
T Consensus        73 ~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~---~~~r~~~~~~---~~G~~i~~~L~~~~~~~  142 (566)
T TIGR01812        73 ADQDAVEY---MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGG-H---SKDRTCYAAD---KTGHALLHTLYEQCLKL  142 (566)
T ss_pred             CCHHHHHH---HHHHHHHHHHHHHHcCCcceecCCCcEeeccccc-c---ccCeeEECCC---CCHHHHHHHHHHHHHHc
Confidence            00000000   0001123445566677655432211110 01111 0   0001111111   12346778888888888


Q ss_pred             CCeEecCceEEEEEeeeccCCCcEEE--E-eCCcc--EEEeCeEEEcCCcChh
Q 015072          167 GAVLRDNTEVKTVLKVKDDVRGGVTV--V-TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       167 gv~i~~~~~V~~i~~~~~~~~~~~~v--~-~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      |+++++++.|++|..  +++ ....+  . ..+|+  .+.|+.||+|||.++.
T Consensus       143 gv~i~~~~~v~~L~~--~~g-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       143 GVSFFNEYFALDLIH--DDG-RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             CCEEEeccEEEEEEE--eCC-EEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence            999999999999988  632 22222  2 24554  5899999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02487 zeta-carotene desaturase

Probab=99.24  E-value=1.1e-08  Score=98.93  Aligned_cols=63  Identities=11%  Similarity=0.054  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-C---cEEEEe---CCccEEEeCeEEEcCCcChh-hhhh
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-G---GVTVVT---SSGEEFWGKKCVVTAGAWVG-KLVK  218 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~---~~~v~~---~~g~~i~ad~vV~A~G~~~~-~l~~  218 (413)
                      .+...+.+.+++.|++|+++++|.+|..  +++. +   ...+++   .+++++.+|.||+|++.+.- .|++
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~--~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp  366 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILY--DKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLP  366 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEE--ecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCC
Confidence            4778888999999999999999999998  6321 2   344555   33446899999999998743 4443

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.24  E-value=4.8e-10  Score=110.00  Aligned_cols=191  Identities=13%  Similarity=0.103  Sum_probs=98.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHH-HHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESS-LLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   84 (413)
                      .++||+|||+|.+|+++|..+++.|.+|+||||....++  .+....|.+.......  .   ..+. ..+.+...... 
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g--~t~~a~Ggi~~~~~~~--~---~ds~~~~~~dt~~~g~-   82 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS--HTVAAQGGIGASLGNM--S---EDNWHYHFYDTIKGSD-   82 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--CchhccCCcccccccc--c---ccChhHhHHHHHHhcC-
Confidence            468999999999999999999999999999999866543  2222222222111100  0   0010 11111111100 


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccC----CCCeEEEEecCCeeecHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEI----PENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      . ......+..   -.+...+...++...|+++.......+. ..+.. ...    .......+. .+  -....+++.|
T Consensus        83 ~-~~d~~~v~~---~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg-~s~~~~~~~~~r~~~~-~~--~tG~~l~~~L  154 (591)
T PRK07057         83 W-LGDQDAIEF---MCREAPNVVYELEHFGMPFDRNADGTIYQRPFGG-HTANYGEKPVQRACAA-AD--RTGHALLHTL  154 (591)
T ss_pred             C-CCCHHHHHH---HHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCC-ccccccCCccceeeec-CC--CChHHHHHHH
Confidence            0 000000000   0011123345556667765432111110 00111 000    000001111 10  1135688888


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+.|++++.++.++++..  ++++..+.|.   ..+|+  .+.++.||+|||.++.
T Consensus       155 ~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  212 (591)
T PRK07057        155 YQQNVAAKTQFFVEWMALDLIR--DADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHhcCCEEEeCcEEEEEEE--cCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence            8888889999999999999987  5322333332   23454  6889999999999875

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.23  E-value=2.8e-09  Score=102.45  Aligned_cols=45  Identities=31%  Similarity=0.465  Sum_probs=39.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCCCCCCCc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~------g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      +|+|||||++||++|++|++.      |.+|+|+|+.+..||+..|....+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g   53 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKD   53 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCC
Confidence            699999999999999999986      379999999999998877764433

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.23  E-value=6e-11  Score=114.42  Aligned_cols=184  Identities=14%  Similarity=0.144  Sum_probs=96.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ++||+|||+|.+|+++|..+++ |.+|+||||....++  ++....|.+.......+      .-...+.++.+..... 
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g--~s~~a~Ggi~~~~~~~d------s~e~~~~d~~~~g~~~-   72 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS--NSHLAQGGIAAAVATYD------SPNDHFEDTLVAGCHH-   72 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC--CchhcCccceecccCCC------CHHHHHHHHHHhccCc-
Confidence            6899999999999999999976 899999999987543  33222222222111110      0111222222211000 


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                       .....+..   -.+...+.++++...|+++..-....+. ..+..     ......+.. .+-..+..+++.|.+.+. 
T Consensus        73 -~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-----~~~~r~~~~-~gd~~g~~i~~~L~~~~~-  141 (510)
T PRK08071         73 -NNERAVRY---LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGA-----HRKRRILHA-GGDATGKNLLEHLLQELV-  141 (510)
T ss_pred             -CCHHHHHH---HHHHHHHHHHHHHHcCCccccCCCCceeeccCcC-----ccCCeEEec-CCCCcHHHHHHHHHHHHh-
Confidence             00000000   0011123445556667665321111100 00000     000011111 111234667888887775 


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEE--EeCCcc--EEEeCeEEEcCCcChh
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .|+++++++.|+++..  +++ ..+.+  ...+++  .+.|+.||+|||+++.
T Consensus       142 ~gV~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        142 PHVTVVEQEMVIDLII--ENG-RCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             cCCEEEECeEhhheee--cCC-EEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            6899999999999987  532 22333  333444  5899999999999875

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.22  E-value=1.5e-10  Score=109.94  Aligned_cols=181  Identities=14%  Similarity=0.074  Sum_probs=95.9

Q ss_pred             EECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC-ccccchHHHHHHHHHHHHHhcCCeeEeee
Q 015072           12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESSLLWEQAQSEIGYKVYFKA   90 (413)
Q Consensus        12 IIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (413)
                      |||+|.+|+++|+.++++|.+|+||||.+.....+.+.. .+........ ..+..-......+++++.+..+.......
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l   79 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARH-GRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL   79 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCccc-ccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence            799999999999999999999999999875311122211 1111110100 00000011112344444433221100000


Q ss_pred             eeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeE
Q 015072           91 HQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVL  170 (413)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i  170 (413)
                      ... +    .+...+..+++.+.|++++.....    .++.    .  ....+...    ....+++.|.+.+++.|++|
T Consensus        80 ~~~-~----~~~s~~~i~wl~~~Gv~f~~~~~g----~~~~----~--~~~~~~~~----~g~~l~~~L~~~a~~~Gv~i  140 (432)
T TIGR02485        80 SRL-G----IGRGSRDLRWAFAHGVHLQPPAAG----NLPY----S--RRTAFLRG----GGKALTNALYSSAERLGVEI  140 (432)
T ss_pred             HHH-H----HhcchhHHHHHHhCCceeeecCCC----Cccc----c--CceeeecC----CHHHHHHHHHHHHHHcCCEE
Confidence            000 0    001133455666667655322110    0110    0  00111111    23568889999999999999


Q ss_pred             ecCceEEEEEeeecc-CCCcEEEEeC-CccEEEeCeEEEcCCcChh
Q 015072          171 RDNTEVKTVLKVKDD-VRGGVTVVTS-SGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       171 ~~~~~V~~i~~~~~~-~~~~~~v~~~-~g~~i~ad~vV~A~G~~~~  214 (413)
                      +++++|++|..  ++ ++..+.+... ++.++.++.||+|+|.+..
T Consensus       141 ~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       141 RYGIAVDRIPP--EAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             EeCCEEEEEEe--cCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence            99999999987  62 2233344433 3347999999999998754

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.22  E-value=2.2e-10  Score=112.46  Aligned_cols=188  Identities=13%  Similarity=0.076  Sum_probs=96.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcC---CcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHH
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRG---QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQS   80 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g---~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   80 (413)
                      ..++||+|||+|.+|+++|..+++.|   .+|+||||....++  ++....|.+........     ..+.+ .+....+
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~--~s~~a~Gg~~a~~~~~~-----~ds~e~~~~d~~~   75 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS--HSVSAEGGTAAVLYPEK-----GDSFDLHAYDTVK   75 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC--Cceecccccceeecccc-----CCCHHHHHHHHHH
Confidence            34689999999999999999999998   89999999987643  22222222211111100     00100 1111111


Q ss_pred             hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      . +... .....+..   -.+...+.++++...|+++.......+. ..+.. .   ......+.. +  -....+++.|
T Consensus        76 ~-g~~~-~d~~lv~~---~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g-~---~~~r~~~~~-d--~tG~~i~~~L  143 (577)
T PRK06069         76 G-SDFL-ADQDAVEV---FVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGG-M---SFPRTTFAA-D--KTGFYIMHTL  143 (577)
T ss_pred             h-hccc-CCHHHHHH---HHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCC-c---ccceeeEcC-C--CchHHHHHHH
Confidence            1 0000 00000000   0001123345666677655322111100 00111 0   000011111 1  0135577888


Q ss_pred             HHHHHH-cCCeEecCceEEEEEeeeccCCCcEE--E-EeCCcc--EEEeCeEEEcCCcChh
Q 015072          160 QTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVT--V-VTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       160 ~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~--v-~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+ .|++++.++.|+++..  +++ ..+.  + ...+++  .+.|+.||+|||+++.
T Consensus       144 ~~~~~~~~gv~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (577)
T PRK06069        144 YSRALRFDNIHFYDEHFVTSLIV--ENG-VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR  201 (577)
T ss_pred             HHHHHhcCCCEEEECCEEEEEEE--ECC-EEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence            887766 5899999999999987  532 2222  2 234554  5899999999999853

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.21  E-value=2.3e-10  Score=103.63  Aligned_cols=56  Identities=25%  Similarity=0.280  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+...+.+.+.+.|++++. ++|+++..  .  +..+.+.+.+++++.+|+||+|+|.+.
T Consensus        57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~--~--~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        57 PELMEKMKEQAVKFGAEIIY-EEVIKVDL--S--DRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHHHHHHHcCCeEEE-EEEEEEEe--c--CCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence            35566677778888999987 89999988  6  456778777777899999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.21  E-value=5.8e-11  Score=114.61  Aligned_cols=187  Identities=16%  Similarity=0.090  Sum_probs=95.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ..++||+|||+|++|+++|..++  +.+|+||||.....+ +++....|.+........      .-...++++.+....
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~g-g~s~~a~Ggi~~~~~~~d------s~e~~~~d~~~~~~g   77 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEG-ASSAWAQGGIAAALGPDD------SPALHAADTLAAGAG   77 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCC-cchHHhhhccccccCCCC------CHHHHHHHHHHhhCC
Confidence            45799999999999999999997  579999999886322 222222222221111100      011122222221100


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHH-hcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ-KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      .  .....+..   -.+...+.++++...|+++..-....... .+..     ......+... +--.+..++..|.+.+
T Consensus        78 ~--~d~~~v~~---~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~-----~~~~r~~~~~-g~~~G~~l~~~L~~~~  146 (513)
T PRK07512         78 L--CDPAVAAL---ITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAA-----HSRRRIVHVG-GDGAGAAIMRALIAAV  146 (513)
T ss_pred             C--CCHHHHHH---HHHHHHHHHHHHHHhCCccccCCCCccccccccC-----ccCCcEEEcC-CCCCHHHHHHHHHHHH
Confidence            0  00000000   00111334556666776543211111100 0000     0000011110 1112467888888888


Q ss_pred             HHc-CCeEecCceEEEEEeeeccCCCcEEE--EeCCcc-EEEeCeEEEcCCcChh
Q 015072          164 IKN-GAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSGE-EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~-~i~ad~vV~A~G~~~~  214 (413)
                      .+. |++++.++.|++|..  ++ +..+.+  ...++. .+.|+.||+|||+++.
T Consensus       147 ~~~~gV~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        147 RATPSITVLEGAEARRLLV--DD-GAVAGVLAATAGGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             HhCCCCEEEECcChhheee--cC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence            765 899999999999987  53 233333  333332 5899999999999763

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.21  E-value=5.2e-10  Score=109.69  Aligned_cols=189  Identities=13%  Similarity=0.040  Sum_probs=95.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ++||+|||+|++|+++|..+++.|.+|+||||....++  ++....|.+.......   .....-...+.+..+... ..
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~~~---~~~Ds~e~~~~d~~~~g~-~~   76 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS--HSVCAQGGINGAVNTK---GEGDSPWIHFDDTVYGGD-FL   76 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC--cccccCCCeEEecCcC---CCCCCHHHHHHHHHHhcC-Cc
Confidence            57999999999999999999999999999999887543  3332323332111100   000000111222211110 00


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                       .....+..   -.+...+.++++...|+++.......+. ..+.. ....   ...+   .+-.....++..|.+.+.+
T Consensus        77 -~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~~~---R~~~---~~~~tG~~i~~~L~~~~~~  145 (589)
T PRK08641         77 -ANQPPVKA---MCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGG-TLHH---RTAF---AGATTGQQLLYALDEQVRR  145 (589)
T ss_pred             -CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCC-eecc---cccc---cCCCcHHHHHHHHHHHHHh
Confidence             00000000   0011123445566667665321110000 00010 0000   0001   0111345677788777665


Q ss_pred             cC----CeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072          166 NG----AVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~g----v~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+    ++++.++.++++..  ++++..+.|.  . .+++  .+.|+.||+|||+++.
T Consensus       146 ~~~~~~i~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  201 (589)
T PRK08641        146 YEVAGLVTKYEGWEFLGAVL--DDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI  201 (589)
T ss_pred             hhccCCcEEEeeEEEEEEEE--CCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence            43    78889999999987  5323333333  3 2344  5789999999999875

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.21  E-value=6.9e-10  Score=108.41  Aligned_cols=185  Identities=14%  Similarity=0.091  Sum_probs=97.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ++||+|||+|++|+++|+.+++.  |.+|+||||....++  .+....|.+..........      ..++++..+. +.
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~--~s~~a~Gg~~~~~~~~ds~------e~~~~dt~~~-g~   73 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS--HTVAAEGGSAAVTGDDDSL------DEHFHDTVSG-GD   73 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--CchhcCCchhhhcCCCCCH------HHHHHHHHHh-cC
Confidence            58999999999999999999987  589999999977643  2222222221111111000      1112222211 10


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      .. .....+..   -.+...+.++++...|+++.......+ ...++. ..    ..-.+...+  -....+++.|.+.+
T Consensus        74 ~~-~d~~lv~~---l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~----~~R~~~~~~--~~G~~i~~~L~~~~  142 (580)
T TIGR01176        74 WL-CEQDVVEY---FVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGG-MK----KERTWFAAD--KTGFHMLHTLFQTS  142 (580)
T ss_pred             Cc-CcHHHHHH---HHHHhHHHHHHHHHcCCccEecCCCceeeeccCC-cc----CCeeeecCC--CCHHHHHHHHHHHH
Confidence            00 00000000   001113344556667776543221111 011111 00    000111111  02356788888877


Q ss_pred             HH-cCCeEecCceEEEEEeeeccCCCcEEE---EeCCcc--EEEeCeEEEcCCcChh
Q 015072          164 IK-NGAVLRDNTEVKTVLKVKDDVRGGVTV---VTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+ .+++++.++.++++..  +++ ..+.+   ...+|+  .+.|+.||+|||.++.
T Consensus       143 ~~~~~i~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       143 LTYPQIMRYDEWFVTDLLV--DDG-RVCGLVAIEMAEGRLVTILADAVVLATGGAGR  196 (580)
T ss_pred             HhcCCCEEEeCeEEEEEEe--eCC-EEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence            66 4799999999999998  632 22222   334564  6899999999999875

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK12839 hypothetical protein; Provisional

Probab=99.20  E-value=2.5e-10  Score=111.24  Aligned_cols=63  Identities=19%  Similarity=0.175  Sum_probs=47.9

Q ss_pred             ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCc--EEEEeCCcc-EEE-eCeEEEcCCcChh
Q 015072          150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGG--VTVVTSSGE-EFW-GKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~-~i~-ad~vV~A~G~~~~  214 (413)
                      .++..++..|.+.+++.|++|+.+++|++|..  ++++..  +.+...+++ .+. ++.||+|||+|+.
T Consensus       211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~--~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTT--DKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEE--CCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            46778888999999999999999999999987  532333  334445555 344 4899999999976

>PLN02815 L-aspartate oxidase

Probab=99.20  E-value=9.7e-11  Score=114.17  Aligned_cols=186  Identities=11%  Similarity=0.082  Sum_probs=97.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||+|.+|+++|+.+++.| +|+||||....++  ++....|.+.......      ..-..++.++.+.....
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg--~s~~a~Ggi~a~~~~~------Ds~e~~~~d~~~~g~~~   98 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES--NTNYAQGGVSAVLDPS------DSVESHMRDTIVAGAFL   98 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC--cHHHhhcccccCCCCC------CCHHHHHHHHHHhccCC
Confidence            4689999999999999999999999 9999999887643  2322222222111110      00111222222211000


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .  ....+.   .-.+...+.++++..+|+++..-...... ..+.. ..   .....+. .  -.....++..|.+.+.
T Consensus        99 ~--d~~lv~---~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg-~s---~~R~~~~-~--d~tG~~i~~~L~~~~~  166 (594)
T PLN02815         99 C--DEETVR---VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGG-HS---HHRIVHA-A--DMTGREIERALLEAVK  166 (594)
T ss_pred             C--cHHHHH---HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCC-Cc---cCceeec-C--CCCHHHHHHHHHHHHH
Confidence            0  000000   00011133455566677665322111100 00111 00   0000111 1  1123567788888877


Q ss_pred             Hc-CCeEecCceEEEEEeeeccCCC---cEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072          165 KN-GAVLRDNTEVKTVLKVKDDVRG---GVTVV---TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~-gv~i~~~~~V~~i~~~~~~~~~---~~~v~---~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +. |+++++++.+++|..  +++++   .+.+.   ..+|+  .+.|+.||+|||++..
T Consensus       167 ~~~~i~i~~~~~~~~Li~--~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        167 NDPNITFFEHHFAIDLLT--SQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             hcCCCEEEeceEhheeee--ecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence            65 899999999999987  53221   33333   23554  5789999999998875

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.20  E-value=7.3e-10  Score=105.97  Aligned_cols=177  Identities=15%  Similarity=0.061  Sum_probs=94.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeE
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVY   87 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (413)
                      +||+|||+|++|+++|..+++.|.+|+||||....   +++....+.+.......+.      -...+.+..+.... . 
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~---~~s~~a~ggi~~~~~~~ds------~e~~~~d~~~~~~~-~-   70 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK---SNSYLAQAGIAFPILEGDS------IRAHVLDTIRAGKY-I-   70 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC---CCcHHHcCCcccccCCCCc------HHHHHHHHHHHhcC-C-
Confidence            79999999999999999999999999999997532   2222222222111110000      00111111111000 0 


Q ss_pred             eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcC
Q 015072           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG  167 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  167 (413)
                      .....+..   -.+...+.++++...|+++....      .... ...+    ..+....  .....+++.|.+.+++.|
T Consensus        71 ~d~~~v~~---~~~~~~~~i~~L~~~Gv~f~~~~------~~~g-~~~~----r~~~~~~--~~G~~i~~~L~~~~~~~g  134 (466)
T PRK08401         71 NDEEVVWN---VISKSSEAYDFLTSLGLEFEGNE------LEGG-HSFP----RVFTIKN--ETGKHIIKILYKHARELG  134 (466)
T ss_pred             CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCC------CcCC-ccCC----eEEECCC--CchHHHHHHHHHHHHhcC
Confidence            00000000   00111234455666676543210      0111 0000    1111111  123578888989998899


Q ss_pred             CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhh
Q 015072          168 AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       168 v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l  216 (413)
                      ++++.. .++++..  ++ +..+.+.. +++.+.++.||+|||.++..+
T Consensus       135 v~i~~~-~v~~l~~--~~-g~v~Gv~~-~g~~i~a~~VVLATGG~~~~~  178 (466)
T PRK08401        135 VNFIRG-FAEELAI--KN-GKAYGVFL-DGELLKFDATVIATGGFSGLF  178 (466)
T ss_pred             CEEEEe-EeEEEEe--eC-CEEEEEEE-CCEEEEeCeEEECCCcCcCCC
Confidence            999865 7888876  52 23344544 455699999999999998643

>PRK06116 glutathione reductase; Validated

Probab=99.20  E-value=1e-09  Score=104.95  Aligned_cols=59  Identities=20%  Similarity=0.149  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +++ +.+.+.+.+|+++.+|.||+|+|...+
T Consensus       208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~~~-g~~~v~~~~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        208 PDIRETLVEEMEKKGIRLHTNAVPKAVEK--NAD-GSLTLTLEDGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHHHHHHHHHHHCCcEEECCCEEEEEEE--cCC-ceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence            45667778888899999999999999987  522 336677778888999999999997543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.19  E-value=1.5e-10  Score=113.30  Aligned_cols=187  Identities=13%  Similarity=0.103  Sum_probs=96.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||+|.+|+++|+.+++.  |.+|+||||....++  ++....|.+.........      -...+.+..+...
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g--~s~~a~Gg~~~~~~~~ds------~e~~~~d~~~~g~   74 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS--HTVAAEGGSAAVAQDHDS------FDYHFHDTVAGGD   74 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--ChhhccchhhhhcCCCCC------HHHHHHHHHHhcc
Confidence            468999999999999999999987  479999999876543  222222222211111000      0111222211100


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      .  ......+..   -.+...+.++++...|+++.......+ ...++. ..    ..-.+...+.  ....+++.|.+.
T Consensus        75 ~--~~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~----~~r~~~~~~~--~G~~i~~~L~~~  142 (582)
T PRK09231         75 W--LCEQDVVEY---FVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGG-MK----IERTWFAADK--TGFHMLHTLFQT  142 (582)
T ss_pred             c--CCCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCceeeecccc-cc----CCeeEecCCC--cHHHHHHHHHHH
Confidence            0  000000000   001113345566677776543221111 011111 00    0001111110  124677777777


Q ss_pred             HHHc-CCeEecCceEEEEEeeeccCC-CcEE-EEeCCcc--EEEeCeEEEcCCcChh
Q 015072          163 AIKN-GAVLRDNTEVKTVLKVKDDVR-GGVT-VVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~~-gv~i~~~~~V~~i~~~~~~~~-~~~~-v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +.+. +++++.++.|+++..  +++. .++. +...+|+  .+.|+.||+|||.++.
T Consensus       143 ~~~~~~i~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  197 (582)
T PRK09231        143 SLKYPQIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             hhcCCCcEEEeCeEEEEEEE--eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence            6664 799999999999998  6321 1222 2335564  6899999999999875

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.19  E-value=4.4e-10  Score=103.25  Aligned_cols=65  Identities=12%  Similarity=0.128  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc--cEEEeCeEEEcCCcC-hhhhhhhh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG--EEFWGKKCVVTAGAW-VGKLVKKI  220 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~vV~A~G~~-~~~l~~~~  220 (413)
                      .++.+.|.+.+++.|++++.+++|+++..  ++ +....+.+.++  ..+.||+||+|+|+| ++.+...+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~--~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF--EG-NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEe--eC-CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence            57788899999999999999999999998  62 23344555555  369999999999999 88887776

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00367 squalene epoxidase; Provisional

Probab=99.18  E-value=6.9e-09  Score=100.53  Aligned_cols=35  Identities=43%  Similarity=0.642  Sum_probs=33.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46899999999999999999999999999999975

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.18  E-value=7.3e-10  Score=107.64  Aligned_cols=187  Identities=14%  Similarity=0.091  Sum_probs=96.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ..++||+|||+|.+|+++|+.++ .|.+|+||||....++  ++....|.+........      .....+.++.+....
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg--~s~~a~Ggi~a~~~~~d------s~e~~~~d~~~~g~~   77 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS--ASDWAQGGIAAAIAPDD------SPKLHYEDTLKAGAG   77 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC--chhhhcccceecccCCC------CHHHHHHHHHHhcCC
Confidence            45789999999999999999996 4999999999887543  23222222221111110      011122222221110


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      ..  ....+..   -.+...+.++++...|+++...+.......+..     ......+...+  -....++..|.+.+.
T Consensus        78 ~~--d~~lv~~---~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g-----~s~~r~~~~~d--~~G~~i~~~L~~~~~  145 (553)
T PRK07395         78 LC--DPEAVRF---LVEQAPEAIASLVEMGVAFDRHGQHLALTLEAA-----HSRPRVLHAAD--TTGRAIVTTLTEQVL  145 (553)
T ss_pred             CC--CHHHHHH---HHHHHHHHHHHHHhcCCeeecCCCceeeecccc-----cccCeEEEeCC--CChHHHHHHHHHHHh
Confidence            00  0000000   001113344556666765532211000000011     00001111111  013567788888776


Q ss_pred             Hc-CCeEecCceEEEEEeeeccC-CCcEEEEe-CCcc--EEEeCeEEEcCCcChh
Q 015072          165 KN-GAVLRDNTEVKTVLKVKDDV-RGGVTVVT-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~-gv~i~~~~~V~~i~~~~~~~-~~~~~v~~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +. |+++++++.|++|..  +++ +..+.+.. .+++  .+.|+.||+|||.+..
T Consensus       146 ~~~gi~i~~~~~v~~Li~--~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~  198 (553)
T PRK07395        146 QRPNIEIISQALALSLWL--EPETGRCQGISLLYQGQITWLRAGAVILATGGGGQ  198 (553)
T ss_pred             hcCCcEEEECcChhhhee--cCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence            54 899999999999987  631 22233322 3454  4789999999999643

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.17  E-value=1.1e-09  Score=104.87  Aligned_cols=59  Identities=17%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc-----EEEeCeEEEcCCcC
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-----EFWGKKCVVTAGAW  212 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-----~i~ad~vV~A~G~~  212 (413)
                      +..+.+.+.+.+++.|++|+++++|++|..  .+++..+.+++.+++     ++.+|.||+|+...
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~--~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~  275 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVL--NEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD  275 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEE--CCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence            466788888888889999999999999986  533234455554443     69999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.17  E-value=3.2e-10  Score=106.33  Aligned_cols=60  Identities=20%  Similarity=0.124  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+...|++++++++|++|..  ++++..+.|++.+|++++|+.||.....+..
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~--~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVF--DENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEE--cCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            57888898888899999999999999988  6333457788889988999999987776643

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.17  E-value=5.5e-10  Score=106.80  Aligned_cols=63  Identities=21%  Similarity=0.254  Sum_probs=51.2

Q ss_pred             eeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      +.+|+..+.+.+.+.+++. |+.++ ...|+++..  ++++..+.|.+.+|..+.|+.||+|||.|.
T Consensus        91 aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~--e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        91 AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLIL--EDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEE--ecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            6778999999999998887 68886 567888876  422356678888888899999999999994

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.16  E-value=2.6e-10  Score=103.52  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             eeecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCc
Q 015072          148 GVIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGA  211 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~  211 (413)
                      ..+|...|.+.+.+.+++ .+++++ +.+|++|..  ++ +....|.+.+|+.+.+|.||+|||.
T Consensus        90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~--e~-~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV--EN-GKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE--CT-TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe--cC-CeEEEEEeCCCCEEecCEEEEeccc
Confidence            457778899999888887 578886 689999988  63 3677889999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PLN02576 protoporphyrinogen oxidase

Probab=99.15  E-value=1.2e-08  Score=99.17  Aligned_cols=49  Identities=39%  Similarity=0.470  Sum_probs=43.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCCCCc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      ..++||+|||||++||++|++|+++ |++|+|+|+.+..||+..|....|
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g   59 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG   59 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC
Confidence            3467999999999999999999999 999999999999998877765444

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.15  E-value=6.3e-10  Score=108.47  Aligned_cols=59  Identities=19%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEeC-eEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWGK-KCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad-~vV~A~G~~~~  214 (413)
                      ..++..|.+.+++.|++++++++|++|..  +++ ..+.|.. .+++  .+.++ .||+|||.+..
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~--~~g-~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIV--EDG-RVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCC-EEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            56777888889999999999999999998  632 3333322 2343  57885 69999999875

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.15  E-value=1e-09  Score=99.38  Aligned_cols=50  Identities=38%  Similarity=0.525  Sum_probs=43.5

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCC
Q 015072            2 EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         2 ~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~   51 (413)
                      +...+..||||||+|++||++|++|.+.|++|+|+|..+..||+..+...
T Consensus         2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           2 TLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence            33456799999999999999999999999999999999999888665444

>PRK06370 mercuric reductase; Validated

Probab=99.15  E-value=1.3e-09  Score=104.49  Aligned_cols=41  Identities=32%  Similarity=0.394  Sum_probs=36.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      |+.+|||+|||||++|+++|..|+++|++|+|||+...+|+
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~   42 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGT   42 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCc
Confidence            55679999999999999999999999999999999765543

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.14  E-value=6.8e-10  Score=108.34  Aligned_cols=44  Identities=34%  Similarity=0.533  Sum_probs=39.0

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      |.+...++||+|||+|.+|+++|+.++++|++|+||||....++
T Consensus         1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG   44 (557)
T PRK07843          1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG   44 (557)
T ss_pred             CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence            55556689999999999999999999999999999999877653

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.14  E-value=3.6e-10  Score=94.63  Aligned_cols=161  Identities=17%  Similarity=0.147  Sum_probs=88.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEe
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYF   88 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (413)
                      +|+|||+|++|+++|+.|++.|++|+|+||+.-.||+.+|....++-.                                
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~--------------------------------   50 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRF--------------------------------   50 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccc--------------------------------
Confidence            699999999999999999999999999999987777776654332210                                


Q ss_pred             eeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCC
Q 015072           89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGA  168 (413)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv  168 (413)
                      ..|.-++.. ..+.+.+..+.+.+.|+- +..........-.. +. +.....-|....      . +..+.+. .....
T Consensus        51 DhGAqYfk~-~~~~F~~~Ve~~~~~glV-~~W~~~~~~~~~~~-~~-~~~d~~pyvg~p------g-msalak~-LAtdL  118 (331)
T COG3380          51 DHGAQYFKP-RDELFLRAVEALRDDGLV-DVWTPAVWTFTGDG-SP-PRGDEDPYVGEP------G-MSALAKF-LATDL  118 (331)
T ss_pred             cccceeecC-CchHHHHHHHHHHhCCce-eeccccccccccCC-CC-CCCCCCccccCc------c-hHHHHHH-Hhccc
Confidence            001111111 112223333333333321 11100000000000 00 000000011111      1 2233332 33457


Q ss_pred             eEecCceEEEEEeeeccCCCcEEEEeCCcc-EEEeCeEEEcCCcC-hhhhh
Q 015072          169 VLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-EFWGKKCVVTAGAW-VGKLV  217 (413)
Q Consensus       169 ~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~vV~A~G~~-~~~l~  217 (413)
                      +|+++++|+++..  .  ++.|++.+++|. ...+|.||+|.-+- +..|+
T Consensus       119 ~V~~~~rVt~v~~--~--~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LL  165 (331)
T COG3380         119 TVVLETRVTEVAR--T--DNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLL  165 (331)
T ss_pred             hhhhhhhhhhhee--c--CCeeEEEecCCCcccccceEEEecCCCcchhhc
Confidence            7888999999999  7  578999996654 68899999998753 33444

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.14  E-value=4.3e-11  Score=113.08  Aligned_cols=146  Identities=26%  Similarity=0.328  Sum_probs=36.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEe
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYF   88 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (413)
                      ||||||||++|+++|+.+++.|.+|+|||+....|+..++.+.. .+...    ....  ......+.++.+...     
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~-~~~~~----~~~~--~~~~gi~~e~~~~~~-----   68 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVS-PFDGN----HDED--QVIGGIFREFLNRLR-----   68 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS--EETTE----EHHH--HHHHHHHHHHHHST------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcC-Chhhc----chhh--ccCCCHHHHHHHHHh-----
Confidence            89999999999999999999999999999999887654433221 11000    0000  111112222222110     


Q ss_pred             eeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCC
Q 015072           89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGA  168 (413)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv  168 (413)
                                             ..+..    . ..     .     ...+.     ....++|..+...+.+.+.+.|+
T Consensus        69 -----------------------~~~~~----~-~~-----~-----~~~~~-----~~~~~~~~~~~~~l~~~l~e~gv  105 (428)
T PF12831_consen   69 -----------------------ARGGY----P-QE-----D-----RYGWV-----SNVPFDPEVFKAVLDEMLAEAGV  105 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------hhccc----c-cc-----c-----ccccc-----ccccccccccccccccccccccc
Confidence                                   00000    0 00     0     00000     00234455555666667777899


Q ss_pred             eEecCceEEEEEeeeccCC-CcEEEEeCCcc-EEEeCeEEEcCCc
Q 015072          169 VLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE-EFWGKKCVVTAGA  211 (413)
Q Consensus       169 ~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~-~i~ad~vV~A~G~  211 (413)
                      ++++++.|+++..  +++. .++.+.+.+|. +++|+.||.|||-
T Consensus       106 ~v~~~t~v~~v~~--~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen  106 EVLLGTRVVDVIR--DGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ---------------------------------------------
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccc
Confidence            9999999999999  7432 23444433344 7999999999994

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.13  E-value=7.9e-10  Score=107.54  Aligned_cols=40  Identities=28%  Similarity=0.490  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~   45 (413)
                      ..++||||||+| +|+++|..+++.|.+|+||||.+..||.
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~   53 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS   53 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence            357999999999 8999999999999999999998776643

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.13  E-value=2.1e-09  Score=102.57  Aligned_cols=57  Identities=12%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|+++++++.|+++..  +  ++.+.+.+++++ +.+|.||+|+|...+
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~--~--~~~v~v~~~~g~-i~~D~vl~a~G~~pn  255 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISH--H--ENQVQVHSEHAQ-LAVDALLIASGRQPA  255 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCEEEEEEcCCe-EEeCEEEEeecCCcC
Confidence            45677788888899999999999999988  6  345666666665 899999999998765

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=8.3e-10  Score=98.18  Aligned_cols=58  Identities=26%  Similarity=0.336  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l  216 (413)
                      ..+++.+.+.+...|+++.. ..|.++..  .  .+.+.|++++++ ++|+.||+|||.....+
T Consensus        61 ~~L~~~~~~~a~~~~~~~~~-~~v~~v~~--~--~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          61 PELMEQMKEQAEKFGVEIVE-DEVEKVEL--E--GGPFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             HHHHHHHHHHHhhcCeEEEE-EEEEEEee--c--CceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            67778888888888999885 77888877  5  227889999998 99999999999877543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.12  E-value=6.9e-10  Score=108.34  Aligned_cols=56  Identities=20%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+++.+.+.+.+.|++++ +++|+++..  +  +..+.+.+.+++ +.+++||+|||++..
T Consensus        60 ~~l~~~l~~~~~~~gv~~~-~~~V~~i~~--~--~~~~~V~~~~g~-~~a~~lVlATGa~p~  115 (555)
T TIGR03143        60 PELMQEMRQQAQDFGVKFL-QAEVLDVDF--D--GDIKTIKTARGD-YKTLAVLIATGASPR  115 (555)
T ss_pred             HHHHHHHHHHHHHcCCEEe-ccEEEEEEe--c--CCEEEEEecCCE-EEEeEEEECCCCccC
Confidence            4566667777778899986 788999887  5  345667776665 899999999999753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.12  E-value=9.6e-10  Score=103.82  Aligned_cols=66  Identities=26%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHcC--CeEecCceEEEEEeeeccCCCcEEEEeCCccE--EEeCeEEEcCCcChhhhhhhhcCC
Q 015072          156 VSMFQTLAIKNG--AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEE--FWGKKCVVTAGAWVGKLVKKISGL  223 (413)
Q Consensus       156 ~~~l~~~~~~~g--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~--i~ad~vV~A~G~~~~~l~~~~~g~  223 (413)
                      ...+...+.+.+  .++..++.|+.+..  +.+++.|.|+++++..  +.||.||+|||.++.+..+.+.|.
T Consensus        85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~--~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~  154 (443)
T COG2072          85 KDYIKDYLEKYGLRFQIRFNTRVEVADW--DEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGL  154 (443)
T ss_pred             HHHHHHHHHHcCceeEEEcccceEEEEe--cCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCc
Confidence            344445555555  35566777777777  5445789999888774  459999999999998887777554

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.12  E-value=4e-09  Score=102.63  Aligned_cols=187  Identities=14%  Similarity=0.105  Sum_probs=96.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ..++||+|||+|.+|+++|+.+++. .+|+||||....++  ++....|.+........      .....+++..+....
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g--~t~~a~Ggi~~~~~~~d------s~e~~~~d~~~~g~~   76 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG--STFYAQGGIAAVLDETD------SIESHVEDTLIAGAG   76 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC--ChhhccCCeeeccCCCc------cHHHHHHHHHHHccC
Confidence            3468999999999999999999986 89999999877543  33222333222111100      011122222211100


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHH----HHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR----QVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~----~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      ..  ....+.   .-.+...+.++++...|+++......    ... ..+..     ......+...+  .....+...|
T Consensus        77 ~~--d~~~v~---~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg-----~~~~r~~~~~~--~~G~~i~~~L  144 (536)
T PRK09077         77 LC--DEDAVR---FIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGG-----HSHRRILHAAD--ATGKAVQTTL  144 (536)
T ss_pred             CC--CHHHHH---HHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCC-----ccCCceEecCC--CCHHHHHHHH
Confidence            00  000000   00011133455666677765432110    000 00110     00001111111  1234677777


Q ss_pred             HHHHHHc-CCeEecCceEEEEEeeecc-----CCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072          160 QTLAIKN-GAVLRDNTEVKTVLKVKDD-----VRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       160 ~~~~~~~-gv~i~~~~~V~~i~~~~~~-----~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+. |+++++++.|+++..  ++     ++..+.+.  . .+++  .+.++.||+|||+++.
T Consensus       145 ~~~~~~~~~I~v~~~~~v~~Li~--~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~  208 (536)
T PRK09077        145 VERARNHPNITVLERHNAIDLIT--SDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK  208 (536)
T ss_pred             HHHHHhCCCcEEEeeEEeeeeee--cccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence            7777664 899999999999987  52     12233332  2 3454  6899999999999875

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.12  E-value=1.9e-09  Score=105.87  Aligned_cols=187  Identities=14%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEee
Q 015072           10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFK   89 (413)
Q Consensus        10 vvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (413)
                      |+|||+|++|+++|..+++.|.+|+|+||....++ +++....|.+........   ........++++.+......  .
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~-g~s~~a~Ggi~a~~~~~~---~~ds~e~~~~d~~~~g~~~~--d   74 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR-AHSIAAQGGINGAVNTKG---DGDSPWRHFDDTVKGGDFRA--R   74 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC-ccchhhhhhhhhhcccCC---CCCCHHHHHHHHHHhcCCCC--C
Confidence            69999999999999999999999999999873321 222222222111110000   00001122222222111000  0


Q ss_pred             eeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH---
Q 015072           90 AHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK---  165 (413)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  165 (413)
                      ...+..   -.+...+.++++...|+++........ ...++. ..   .....+.. +.  ....++..|.+.+++   
T Consensus        75 ~~lv~~---l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~---~~R~~~~~-~~--tG~~i~~~L~~~~~~~~~  144 (603)
T TIGR01811        75 ESPVKR---LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGG-VQ---VSRTAYAR-GQ--TGQQLLLALDSALRRQIA  144 (603)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHcCCEEEecCCCccccccccC-cc---cCcceecC-CC--ChhHHHHHHHHHHHhhhc
Confidence            000000   001113345566667765532111100 011111 00   00011111 10  124555555555443   


Q ss_pred             -cCCeEecCceEEEEEeeeccCCCcEEEE--e-CCcc--EEEeCeEEEcCCcChh
Q 015072          166 -NGAVLRDNTEVKTVLKVKDDVRGGVTVV--T-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 -~gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                       .|++++++++|++|..  ++++..+.|.  . .+++  .+.|+.||+|||.++.
T Consensus       145 ~~gV~i~~~t~v~~Li~--dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~  197 (603)
T TIGR01811       145 AGLVEKYEGWEMLDIIV--VDGNRARGIIARNLVTGEIETHSADAVILATGGYGN  197 (603)
T ss_pred             cCCcEEEeCcEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence             3799999999999987  5322333333  2 2454  6899999999999754

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.10  E-value=7.4e-10  Score=108.40  Aligned_cols=40  Identities=38%  Similarity=0.494  Sum_probs=36.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ..++||||||+|.+|+++|+.++++|.+|+||||....++
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            4578999999999999999999999999999999987654

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.09  E-value=9.4e-10  Score=102.44  Aligned_cols=152  Identities=23%  Similarity=0.269  Sum_probs=90.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ....+|+|||||++||.+|++|.+.|++|+++||.+..||.-...-.....+               ...++.+...+  
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~---------------ss~Y~~l~tn~--   66 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVH---------------SSVYKSLRTNL--   66 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccc---------------cchhhhhhccC--
Confidence            3467999999999999999999999999999999988753211000000000               00011111100  


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                                                          + .+.. .++. +.+++..      ....-+..+++++|...++
T Consensus        67 ------------------------------------p-Ke~~-~~~d-fpf~~~~------~~~~p~~~e~~~YL~~yA~  101 (448)
T KOG1399|consen   67 ------------------------------------P-KEMM-GYSD-FPFPERD------PRYFPSHREVLEYLRDYAK  101 (448)
T ss_pred             ------------------------------------C-hhhh-cCCC-CCCcccC------cccCCCHHHHHHHHHHHHH
Confidence                                                0 0000 1111 1111110      0011122478888888888


Q ss_pred             HcCC--eEecCceEEEEEeeeccCC-CcEEEEeCCc----cEEEeCeEEEcCCcChhhhhhhhcC
Q 015072          165 KNGA--VLRDNTEVKTVLKVKDDVR-GGVTVVTSSG----EEFWGKKCVVTAGAWVGKLVKKISG  222 (413)
Q Consensus       165 ~~gv--~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g----~~i~ad~vV~A~G~~~~~l~~~~~g  222 (413)
                      ..+.  .|.++++|..+..  .  . +.|.|.+.++    ++.-+|.||+|+|.+..+..+...+
T Consensus       102 ~F~l~~~i~f~~~v~~v~~--~--~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g  162 (448)
T KOG1399|consen  102 HFDLLKMINFNTEVVRVDS--I--DKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG  162 (448)
T ss_pred             hcChhhheEecccEEEEee--c--cCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence            7764  6788899999988  6  4 5788876543    3577999999999996444454433

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.09  E-value=1.4e-09  Score=114.41  Aligned_cols=183  Identities=19%  Similarity=0.205  Sum_probs=96.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc-cccchHHHHHHHHH-HHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESSLLWE-QAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~   83 (413)
                      .++||||||+|.+|+++|..+++.|.+|+||||....++.+.  ...+.+....... ..... .++.+.+. ..... +
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~--~s~ggi~~~~t~~q~~~gi-~D~~~~~~~d~~~~-~  483 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA--KATSGINGWGTRAQAKQDV-LDGGKFFERDTHLS-G  483 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh--hcccccccCCchhhhhhcc-cccHHHHHHHHHHh-c
Confidence            468999999999999999999999999999999987654322  1112221110000 00000 01111111 11110 0


Q ss_pred             CeeEeeeeeeeeCCCChHH-------HHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecC--Ceee--cH
Q 015072           84 YKVYFKAHQFDMGPSENKS-------LRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTEL--GGVI--KP  152 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~--~~  152 (413)
                      ..      .    ..+.+.       ..+.++++...|+++.....      +.. ....   .....+.  .+..  ..
T Consensus       484 ~~------~----~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~------~gg-~~~~---r~~~~~~~~~g~~~~~G  543 (1167)
T PTZ00306        484 KG------G----HCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQ------LGG-ASRK---RCHRAPDKKDGTPVPIG  543 (1167)
T ss_pred             cC------C----CCCHHHHHHHHHhhHHHHHHHHHcCCCceeeec------cCC-CCCC---ceeecCcccCCCcCCcH
Confidence            00      0    011111       13345566667776543210      111 0000   0111110  1110  12


Q ss_pred             HHHHHHHHHHHHH---cCCeEecCceEEEEEeeeccC----C----CcEEE--EeC---Ccc--EEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIK---NGAVLRDNTEVKTVLKVKDDV----R----GGVTV--VTS---SGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~---~gv~i~~~~~V~~i~~~~~~~----~----~~~~v--~~~---~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ..+++.|.+.+++   .|++|+++++++++..  +++    +    ..+.|  +..   +|+  .+.|+.||+|||.+..
T Consensus       544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~--d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~  621 (1167)
T PTZ00306        544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLS--ESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN  621 (1167)
T ss_pred             HHHHHHHHHHHHhhccCCcEEEECCEEEEEEe--cCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence            4566677776654   4899999999999998  631    1    22333  333   554  6899999999999876

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.09  E-value=6.3e-09  Score=102.10  Aligned_cols=62  Identities=11%  Similarity=0.159  Sum_probs=46.5

Q ss_pred             ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEe-CeEEEcCCcChh
Q 015072          150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWG-KKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~a-d~vV~A~G~~~~  214 (413)
                      .++..++..|.+.+++.|+++++++.|++|..  ++ +....|.. .+++  ++.+ +.||+|||++..
T Consensus       218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~--~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        218 VMGNALIGRLLYSLRARGVRILTQTDVESLET--DH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEe--eC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence            34567888899999999999999999999987  52 23333433 2333  5776 689999999876

>PLN02268 probable polyamine oxidase

Probab=99.09  E-value=4.9e-09  Score=99.99  Aligned_cols=42  Identities=38%  Similarity=0.415  Sum_probs=39.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      +|+|||||++|+++|+.|.++|++|+|+|+.++.||+..|..
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~   43 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY   43 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC
Confidence            799999999999999999999999999999999998877653

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.08  E-value=4.1e-09  Score=102.97  Aligned_cols=180  Identities=14%  Similarity=0.191  Sum_probs=92.2

Q ss_pred             cEEEECCCHHHHHHHHHHH----HcCCcEEEEcccCCCCCCCCCCCCCcc--eecccCCccccchHHHHHHHHHHHHHhc
Q 015072            9 DVIVVGAGIMGSSAAYQLA----KRGQKTLLLEQFDFLHHRGSSHGESRT--IRATYPEDYYHPMVLESSLLWEQAQSEI   82 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~----~~g~~V~lvE~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (413)
                      ||+|||+|++|+++|+.++    +.|.+|+||||....++  .+. ..|.  +........  . ...-...++...+..
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s--~s~-A~G~~gi~~~~~~~~--g-~Ds~e~~~~d~~~~~   74 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERS--GAV-AQGLSAINTYLGTRF--G-ENNAEDYVRYVRTDL   74 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCC--Ccc-ccccchhhhhhhccc--C-CCCHHHHHHHHHHhc
Confidence            8999999999999999998    67999999999876432  222 2221  111111000  0 000112222222211


Q ss_pred             CCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccC-HHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHH
Q 015072           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLD-CRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      . .. .....+.   .-.+...+.++++...|+++.... .... .+       ....   ....    ....+.+.+..
T Consensus        75 ~-gl-~d~~lV~---~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~-~~-------~g~~---~~~~----gG~~~~r~l~~  134 (614)
T TIGR02061        75 M-GL-VREDLIF---DMARHVDDSVHLFEEWGLPLWIKPEDGKY-VR-------EGRW---QIMI----HGESYKPIVAE  134 (614)
T ss_pred             C-CC-CcHHHHH---HHHHHHHHHHHHHHHcCCCceecCCCCcc-cc-------CCCc---ccCc----CchhHHHHHHH
Confidence            1 00 0000000   000111344556666777654311 0000 00       0000   0000    12344555555


Q ss_pred             HHHHcCCeEecCceEEEEEeeeccC--CCcEEEE---eCCcc--EEEeCeEEEcCCcChhhh
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDV--RGGVTVV---TSSGE--EFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~--~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~~l  216 (413)
                      .+.+.+++++.++.|+++..  +++  +..+.+.   ..+|+  .+.|+.||+|||+|+..+
T Consensus       135 ~l~~~~~~i~~~~~v~~Ll~--d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly  194 (614)
T TIGR02061       135 AAKNALGDIFERIFIVKLLL--DKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVY  194 (614)
T ss_pred             HHHhCCCeEEcccEEEEEEe--cCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccccc
Confidence            66666789999999999998  631  2233332   23554  689999999999987533

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.08  E-value=2.4e-09  Score=102.09  Aligned_cols=35  Identities=34%  Similarity=0.499  Sum_probs=32.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +|||+|||||++|+++|..++++|++|+|+|+...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~   36 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRV   36 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCcc
Confidence            59999999999999999999999999999999643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.08  E-value=8.7e-09  Score=96.49  Aligned_cols=57  Identities=25%  Similarity=0.240  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--EEEeCeEEEcCCcC
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--EFWGKKCVVTAGAW  212 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~vV~A~G~~  212 (413)
                      ..++.+.+.+.+++.|++++++++|+.++.  .  ++.+.+.+++|+  ++++|.|++|+|-.
T Consensus       213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~--~--~~~v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         213 DPEISKELTKQLEKGGVKILLNTKVTAVEK--K--DDGVLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             CHHHHHHHHHHHHhCCeEEEccceEEEEEe--c--CCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence            467888888899888899999999999988  6  333777776665  68999999999964

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.08  E-value=1.2e-08  Score=97.00  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=38.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~----g~~V~lvE~~~~~~~~~~s~   49 (413)
                      +.+++|||||++||++|++|++.    |.+|+|+|+.+..||...+.
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~   68 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGA   68 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCc
Confidence            57899999999999999999995    68999999999988776543

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.07  E-value=1e-09  Score=95.18  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=41.2

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072            2 EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         2 ~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~   49 (413)
                      .+.....+|+|||+|++|+++|+.|+++ ++|+|+|++...||...+.
T Consensus         3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv   49 (447)
T COG2907           3 NQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTV   49 (447)
T ss_pred             CCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcccee
Confidence            3445678999999999999999999987 7999999999998877665

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.07  E-value=1.8e-09  Score=105.55  Aligned_cols=35  Identities=51%  Similarity=0.715  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++||+|||+|.+|+++|+.+++.|.+|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            57999999999999999999999999999999998

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.07  E-value=2.6e-09  Score=103.70  Aligned_cols=57  Identities=12%  Similarity=0.138  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .++.+.+.+.+++.|++++.+++|+++..  .  .+.+.+.+.+|+++.+|.||+|+|...
T Consensus       266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~--~--~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        266 PKLAAALEEHVKEYDVDIMNLQRASKLEP--A--AGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c--CCeEEEEECCCCEEEcCEEEECCCCCc
Confidence            56777788888889999999999999988  6  356777777887899999999999854

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.07  E-value=3.7e-09  Score=101.34  Aligned_cols=40  Identities=35%  Similarity=0.487  Sum_probs=35.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      +.+|||+|||||++|+.+|..|+++|++|+|||+.+..||
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG   41 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG   41 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence            4469999999999999999999999999999998754443

>PLN02661 Putative thiazole synthesis

Probab=99.07  E-value=3.5e-09  Score=94.74  Aligned_cols=38  Identities=39%  Similarity=0.519  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~~   43 (413)
                      .++||+|||||++|+++|++|++. |++|+|||+....+
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G  129 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG  129 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence            368999999999999999999986 89999999987664

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=99.07  E-value=3e-08  Score=89.56  Aligned_cols=73  Identities=22%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             cCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +.-|.-.-..+++.+.+.+++.|++|+++++|.+|+.  .++ ....+.+++|+++.+|+||+|.|..+..++.++
T Consensus       165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~~-~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l  237 (486)
T COG2509         165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI--EDN-EVLGVKLTKGEEIEADYVVLAPGRSGRDWFEML  237 (486)
T ss_pred             cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cCC-ceEEEEccCCcEEecCEEEEccCcchHHHHHHH
Confidence            3335555578899999999999999999999999999  632 346677889988999999999999887777666

>PLN02676 polyamine oxidase

Probab=99.07  E-value=1.5e-08  Score=97.07  Aligned_cols=45  Identities=38%  Similarity=0.448  Sum_probs=39.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s~   49 (413)
                      ...+||+|||||++|+++|++|+++|. +|+|+|+.+..||+..+.
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~   69 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKA   69 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceee
Confidence            346899999999999999999999998 699999999888776554

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.06  E-value=1e-08  Score=98.42  Aligned_cols=58  Identities=21%  Similarity=0.281  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc---cEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG---EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|++++.+++|+++..  +  ++.+.+.+.++   +++.+|.||+|+|...+
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~--~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        213 KEISKLAERALKKRGIKIKTGAKAKKVEQ--T--DDGVTVTLEDGGKEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEE--e--CCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence            46667777888889999999999999988  6  34566665554   57999999999998654

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.06  E-value=1.6e-09  Score=96.10  Aligned_cols=169  Identities=21%  Similarity=0.245  Sum_probs=99.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHH
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQA   78 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~------g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (413)
                      ...+||+|||||++|+++|.+|.+.      .++|+|+||....|+...|+.   .+.+.        ...+-...|++.
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa---viep~--------aldEL~P~wke~  142 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA---VIEPG--------ALDELLPDWKED  142 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce---eeccc--------hhhhhCcchhhc
Confidence            3569999999999999999999874      469999999988765444322   11110        011111222222


Q ss_pred             HHhcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHH
Q 015072           79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSM  158 (413)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                      ...+...+..  .                        .+.+++...   +++    ++.. ..+-.....++.-.+++++
T Consensus       143 ~apl~t~vT~--d------------------------~~~fLt~~~---~i~----vPv~-~pm~NhGNYvv~L~~~v~w  188 (621)
T KOG2415|consen  143 GAPLNTPVTS--D------------------------KFKFLTGKG---RIS----VPVP-SPMDNHGNYVVSLGQLVRW  188 (621)
T ss_pred             CCcccccccc--c------------------------ceeeeccCc---eee----cCCC-cccccCCcEEEEHHHHHHH
Confidence            1111111000  0                        011111110   011    0100 1111122355666889999


Q ss_pred             HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---------------ccEEEeCeEEEcCCcC---hhhhhhhh
Q 015072          159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---------------GEEFWGKKCVVTAGAW---VGKLVKKI  220 (413)
Q Consensus       159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---------------g~~i~ad~vV~A~G~~---~~~l~~~~  220 (413)
                      |-+.+++.|++|+-+..+.++..  ++++....|-|+|               |-++.|+.-|+|-|..   +.++++..
T Consensus       189 Lg~kAEe~GvEiyPg~aaSevly--~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf  266 (621)
T KOG2415|consen  189 LGEKAEELGVEIYPGFAASEVLY--DEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKF  266 (621)
T ss_pred             HHHHHHhhCceeccccchhheeE--cCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHh
Confidence            99999999999999999999998  6544555555543               2368899999998875   44666655

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.06  E-value=4.1e-09  Score=100.47  Aligned_cols=37  Identities=32%  Similarity=0.533  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ++|||+|||||++|+++|..|+++|++|+|||+...+
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~G   37 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLG   37 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccc
Confidence            3699999999999999999999999999999997543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.05  E-value=6e-09  Score=99.34  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +  +..+.+.+ +++++.+|.||+|+|...+
T Consensus       198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~--~--~~~v~v~~-~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        198 PSVAALAKQYMEEDGITFLLNAHTTEVKN--D--GDQVLVVT-EDETYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEe--c--CCEEEEEE-CCeEEEcCEEEEeeCCCCC
Confidence            45566677778889999999999999987  6  34455544 4556999999999997654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.05  E-value=4.3e-09  Score=101.20  Aligned_cols=38  Identities=29%  Similarity=0.460  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ...||++|||||++|+++|..|+++|++|+|||+...+
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~G   39 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLG   39 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence            45799999999999999999999999999999997443

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.03  E-value=1.6e-09  Score=102.70  Aligned_cols=48  Identities=40%  Similarity=0.452  Sum_probs=42.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES   52 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~   52 (413)
                      .+..+|+|||||++|++||.+|.+.|++|+|+|+.++.||+..+....
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~   60 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE   60 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC
Confidence            346799999999999999999999999999999999999987765443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.02  E-value=1.2e-08  Score=105.08  Aligned_cols=37  Identities=38%  Similarity=0.570  Sum_probs=34.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .++||+|||+|.+|+++|+.+++.|.+|+||||....
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~   48 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVR   48 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            4689999999999999999999999999999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.02  E-value=6.2e-09  Score=100.95  Aligned_cols=57  Identities=21%  Similarity=0.252  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .++...+.+.+.+.|++++.+++|+++..  +  .+.+.+.+++|+.+.+|++|+|+|...
T Consensus       267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~--~--~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       267 SQLAANLEEHIKQYPIDLMENQRAKKIET--E--DGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             HHHHHHHHHHHHHhCCeEEcCCEEEEEEe--c--CCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            45666677777888999999999999988  6  345677777787899999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK14694 putative mercuric reductase; Provisional

Probab=99.02  E-value=1.5e-08  Score=97.33  Aligned_cols=57  Identities=12%  Similarity=0.135  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|+++++++.|+++..  +  ++.+.+.+++++ +.+|.||+|+|...+
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~--~--~~~~~v~~~~~~-i~~D~vi~a~G~~pn  274 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDY--N--GREFILETNAGT-LRAEQLLVATGRTPN  274 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCEEEEEECCCE-EEeCEEEEccCCCCC
Confidence            45677888888899999999999999987  6  344556665554 999999999998765

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.02  E-value=1.1e-08  Score=98.22  Aligned_cols=58  Identities=24%  Similarity=0.301  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc--cEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|++++.+++|+++..  +  ++.+.+.+.+|  +++.+|.||+|+|...+
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEK--N--DDQVVYENKGGETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEE--e--CCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence            45667777888889999999999999987  6  34566666666  46999999999997654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.02  E-value=8.9e-10  Score=106.00  Aligned_cols=192  Identities=21%  Similarity=0.202  Sum_probs=102.2

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc--ccchHHHHHHHHHHHHH
Q 015072            3 FSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPMVLESSLLWEQAQS   80 (413)
Q Consensus         3 ~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   80 (413)
                      ++..++||+|||||.+||.+|..++++|.+|+|+||....+  ++|....+.+........  ... .  -..++.+..+
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r--g~t~~a~gG~~a~~~~~~~~~~d-s--~e~~~~dtvk   76 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR--GHTVAAQGGINAALGNTVDVEGD-S--PELHFYDTVK   76 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC--CchhhhcccccccccCcccccCC-C--HHHHHHHHHh
Confidence            34567999999999999999999999999999999998775  333333333322221110  000 0  0011111111


Q ss_pred             hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCcc-ccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ-VLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      ..  +.......+...   .+...+.+.+++++|.++. ..+..-..+.++. ....   .   ....+--....++..|
T Consensus        77 g~--d~l~dqd~i~~~---~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg-~~~~---r---t~~~~~~tG~~ll~~L  144 (562)
T COG1053          77 GG--DGLGDQDAVEAF---ADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGG-HSKP---R---TCFAADKTGHELLHTL  144 (562)
T ss_pred             cc--CCcCCHHHHHHH---HHhhHHHHHHHHHhCCCcccCCCccccccccCC-cCCC---c---ceecCCCCcHHHHHHH
Confidence            11  100000000000   0011233455566666542 2222222223333 1111   0   1111222235678888


Q ss_pred             HHHHHH-cCCeEecCceEEEEEeeeccCCC---cEEEEeCCcc--EEEeCeEEEcCCcCh
Q 015072          160 QTLAIK-NGAVLRDNTEVKTVLKVKDDVRG---GVTVVTSSGE--EFWGKKCVVTAGAWV  213 (413)
Q Consensus       160 ~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~---~~~v~~~~g~--~i~ad~vV~A~G~~~  213 (413)
                      .+++.+ .+++++.+..++++..  +++..   .+.+...+++  .+.++.||+|||+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         145 YEQLLKFSGIEIFDEYFVLDLLV--DDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             HHHHHHhhcchhhhhhhhhhhee--cCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence            888877 5678888999999987  53321   2233345565  677899999999876

>PLN02507 glutathione reductase

Probab=99.01  E-value=9.4e-09  Score=99.03  Aligned_cols=32  Identities=41%  Similarity=0.477  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      +||++|||||++|+.+|..|++.|++|+|||+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>PRK14727 putative mercuric reductase; Provisional

Probab=99.01  E-value=1.8e-08  Score=96.88  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +  ++.+.+.+++++ +.+|.||+|+|.+.+
T Consensus       228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~--~~~~~v~~~~g~-i~aD~VlvA~G~~pn  284 (479)
T PRK14727        228 PLLGETLTACFEKEGIEVLNNTQASLVEH--D--DNGFVLTTGHGE-LRAEKLLISTGRHAN  284 (479)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCcEEEEEEE--e--CCEEEEEEcCCe-EEeCEEEEccCCCCC
Confidence            35667778888889999999999999987  5  345666666665 999999999999865

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.00  E-value=1.2e-08  Score=98.21  Aligned_cols=34  Identities=41%  Similarity=0.569  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      ..+||++|||||++|+++|..|++.|++|+|||+
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            3469999999999999999999999999999998

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.00  E-value=1.3e-09  Score=99.46  Aligned_cols=178  Identities=20%  Similarity=0.228  Sum_probs=101.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcccc-chHHHHHHHHHHHHHhcCCeeE
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH-PMVLESSLLWEQAQSEIGYKVY   87 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   87 (413)
                      ||+|||+|++||++|+.|.+. ++|+|+-|.....  ++|....|.+...+.+.+.. ....+      .+..--++   
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~--~sS~~AQGGIAa~~~~~Ds~~~Hv~D------TL~AG~gl---   76 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE--SSSYWAQGGIAAALSEDDSPELHVAD------TLAAGAGL---   76 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC--ccchhhcCceEeeeCCCCCHHHHHHH------HHHhcCCC---
Confidence            999999999999999999987 9999999987763  56666666665555443211 11111      11110000   


Q ss_pred             eeeeeeeeCCCCh----HHHHHHHHHHHhCCCCccccCHHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072           88 FKAHQFDMGPSEN----KSLRSVIASCRKNSVPHQVLDCRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        88 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                             ......    ..-...++++..+|+++..-....+ ..++.. .    ...-+....+  -....+++.|.+.
T Consensus        77 -------cD~~aV~~iv~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Egg-H----S~rRIlH~~~--~TG~~I~~~L~~~  142 (518)
T COG0029          77 -------CDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGG-H----SRRRILHAAD--ATGKEIMTALLKK  142 (518)
T ss_pred             -------CcHHHHHHHHHhHHHHHHHHHHcCCCCcCCCCCceeeeeecc-c----CCceEEEecC--CccHHHHHHHHHH
Confidence                   000000    0113345555666765433321100 001111 0    0001111111  1236788888888


Q ss_pred             HHH-cCCeEecCceEEEEEeeeccCCC--cEEEEeCCc--cEEEeCeEEEcCCcChh
Q 015072          163 AIK-NGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~-~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g--~~i~ad~vV~A~G~~~~  214 (413)
                      +.+ .+++++.++.+.+|..  +++..  ++.+...++  .++.++.||+|||+...
T Consensus       143 v~~~p~I~v~e~~~a~~li~--~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~  197 (518)
T COG0029         143 VRNRPNITVLEGAEALDLII--EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGG  197 (518)
T ss_pred             HhcCCCcEEEecchhhhhhh--cCCceEeEEEEecCCCeEEEEecCeEEEecCCCcc
Confidence            876 6899999999999988  64311  333333333  36899999999998664

>PLN02568 polyamine oxidase

Probab=99.00  E-value=1.9e-08  Score=97.17  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=40.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcC-----CcEEEEcccCCCCCCCCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRG-----QKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g-----~~V~lvE~~~~~~~~~~s~   49 (413)
                      |++..||+|||||++|+++|..|++.|     ++|+|+|+....||+..+.
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~   52 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS   52 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence            445689999999999999999999887     8999999999988876554

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.99  E-value=1.2e-08  Score=82.24  Aligned_cols=42  Identities=29%  Similarity=0.480  Sum_probs=33.4

Q ss_pred             cCCeEe-cCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCc
Q 015072          166 NGAVLR-DNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGA  211 (413)
Q Consensus       166 ~gv~i~-~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~  211 (413)
                      .|+++. .+.+|++|..  .  ++++.+.+.+|..+.+|.||+|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~--~--~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRR--D--DDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEE--c--CCcEEEEECCCCEEEeCEEEECCCC
Confidence            354443 3679999999  7  4567888899998999999999996

>PLN02546 glutathione reductase

Probab=98.99  E-value=9.6e-09  Score=99.59  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      +|||+|||+|.+|..+|..|+++|++|+|||+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.98  E-value=5.7e-08  Score=93.30  Aligned_cols=58  Identities=19%  Similarity=0.185  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe--CCc--cEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT--SSG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g--~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +  +..+.+..  .+|  +++.+|.||+|+|...+
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        213 AEVSKEIAKQYKKLGVKILTGTKVESIDD--N--GSKVTVTVSKKDGKAQELEADKVLQAIGFAPR  274 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEE--e--CCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence            45667788888889999999999999987  5  33444433  355  36999999999997554

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.97  E-value=1.2e-07  Score=86.67  Aligned_cols=62  Identities=29%  Similarity=0.288  Sum_probs=52.6

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc-EEEeCeEEEcCCcChhhhhhhh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-EFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      .+.++.....+.+++.||++++++.|++++.  +    .  |++++|+ ++.++.+|+|+|..++++.+++
T Consensus       207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~--v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----G--VTLKDGEEEIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----c--EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence            3578888888999999999999999999988  5    2  4556666 4999999999999999888874

>PTZ00058 glutathione reductase; Provisional

Probab=98.97  E-value=1.3e-08  Score=98.75  Aligned_cols=37  Identities=32%  Similarity=0.390  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+||++|||||.+|.++|..+++.|++|+|||++..+
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~G   83 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLG   83 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            5799999999999999999999999999999997544

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.97  E-value=4e-09  Score=95.18  Aligned_cols=35  Identities=40%  Similarity=0.574  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~   42 (413)
                      ||+||||+|.+|+.+|.+|++.| .+|+|+|++...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            79999999999999999999997 699999999754

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.96  E-value=1.5e-08  Score=90.94  Aligned_cols=73  Identities=23%  Similarity=0.234  Sum_probs=60.8

Q ss_pred             CCCeEEEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          136 PENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +...+++.++.+|.   ..+..++.+.+++.|.+|.++..|.+|..  ++ +..+.|+..||+++.++.||-.++.|..
T Consensus       250 d~~~g~~~Yp~GG~---Gavs~aia~~~~~~GaeI~tka~Vq~Ill--d~-gka~GV~L~dG~ev~sk~VvSNAt~~~T  322 (561)
T KOG4254|consen  250 DGHKGGWGYPRGGM---GAVSFAIAEGAKRAGAEIFTKATVQSILL--DS-GKAVGVRLADGTEVRSKIVVSNATPWDT  322 (561)
T ss_pred             cccCCcccCCCCCh---hHHHHHHHHHHHhccceeeehhhhhheec--cC-CeEEEEEecCCcEEEeeeeecCCchHHH
Confidence            34555666666665   57788899999999999999999999999  74 4678889999999999999999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=98.95  E-value=4.3e-08  Score=96.62  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|+++++++.|+++..  +  ++.+.+.+++++ +.+|.||+|+|...+
T Consensus       310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~~~~~v~~~~~~-i~~D~vi~a~G~~pn  366 (561)
T PRK13748        310 PAIGEAVTAAFRAEGIEVLEHTQASQVAH--V--DGEFVLTTGHGE-LRADKLLVATGRAPN  366 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c--CCEEEEEecCCe-EEeCEEEEccCCCcC
Confidence            45667788888899999999999999987  6  345566666664 999999999998654

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.95  E-value=1.1e-07  Score=88.86  Aligned_cols=60  Identities=12%  Similarity=0.094  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ..++.+.|.+.+++.|++++.+++|+++..  .++ ....+.+.+++  .+++|.||+|+|.+.+
T Consensus       258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~~-~V~~v~~~~g~~~~i~AD~VVLAtGrf~s  319 (422)
T PRK05329        258 GLRLQNALRRAFERLGGRIMPGDEVLGAEF--EGG-RVTAVWTRNHGDIPLRARHFVLATGSFFS  319 (422)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--eCC-EEEEEEeeCCceEEEECCEEEEeCCCccc
Confidence            356778888889899999999999999988  622 22233344443  5899999999998654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.95  E-value=2.1e-08  Score=96.11  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=33.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      +|||+|||||++|+++|..++++|++|+|||+....||
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG   40 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG   40 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee
Confidence            49999999999999999999999999999997544443

>TIGR02053 MerA mercuric reductase

Probab=98.93  E-value=4.8e-08  Score=93.85  Aligned_cols=58  Identities=16%  Similarity=0.204  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---CccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +  ++.+.+.+.   +++++.+|.||+|+|...+
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~--~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~  267 (463)
T TIGR02053       207 PEISAAVEEALAEEGIEVVTSAQVKAVSV--R--GGGKIITVEKPGGQGEVEADELLVATGRRPN  267 (463)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEE--c--CCEEEEEEEeCCCceEEEeCEEEEeECCCcC
Confidence            34566777888889999999999999987  6  233444332   2347999999999997543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK02106 choline dehydrogenase; Validated

Probab=98.93  E-value=4.5e-08  Score=96.10  Aligned_cols=38  Identities=32%  Similarity=0.430  Sum_probs=34.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDF   41 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~-~g~~V~lvE~~~~   41 (413)
                      +..++|+||||+|.+|+.+|.+|++ .|++|+|||++..
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            4567999999999999999999999 7999999999953

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.93  E-value=1.7e-09  Score=73.23  Aligned_cols=42  Identities=40%  Similarity=0.536  Sum_probs=35.9

Q ss_pred             EECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072           12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus        12 IIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      |||||++|+++|+.|+++|++|+|+|+.+..|+...+....+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g   42 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG   42 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECC
Confidence            899999999999999999999999999999887766654433

...

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.92  E-value=2.5e-08  Score=86.03  Aligned_cols=72  Identities=17%  Similarity=0.144  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--EEEeCeEEEcCCcC-hhhhhhhhcCCCcce
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--EFWGKKCVVTAGAW-VGKLVKKISGLELPI  227 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~vV~A~G~~-~~~l~~~~~g~~~p~  227 (413)
                      -++.+.|...+++.|+.+..+.+|.+.+.  .++ ....|.+.+..  .+++|..|+|+|.+ ++.+..+..++.-|+
T Consensus       258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~--~~~-~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPI  332 (421)
T COG3075         258 IRLHNQLQRQFEQLGGLWMPGDEVKKATC--KGG-RVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPI  332 (421)
T ss_pred             hhHHHHHHHHHHHcCceEecCCceeeeee--eCC-eEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcch
Confidence            35567788888999999999999999988  632 33445665554  58899999999986 455655554444444

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.91  E-value=1e-09  Score=96.29  Aligned_cols=66  Identities=24%  Similarity=0.337  Sum_probs=46.1

Q ss_pred             cHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCC-CcEEEEeCCcc--EEEeCeEEEcCCcChhhhhhhh
Q 015072          151 KPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE--EFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +-.++++.|++.+.. .++++. +..|+++.+  +++- .+++..++.|+  +..|-.-|+|.|.+++ +.+.+
T Consensus       145 hnGRFvq~lR~ka~slpNV~~e-eGtV~sLle--e~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSn-lRrsL  214 (509)
T KOG1298|consen  145 HNGRFVQRLRKKAASLPNVRLE-EGTVKSLLE--EEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSN-LRRSL  214 (509)
T ss_pred             eccHHHHHHHHHHhcCCCeEEe-eeeHHHHHh--ccCeEEeEEEecCCCceEEEecceEEEecchhHH-HHHHh
Confidence            346889989887755 478887 456888877  5321 34556666666  4566779999999995 55555

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.91  E-value=1.1e-07  Score=91.84  Aligned_cols=58  Identities=10%  Similarity=0.070  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++.++.|+++..  .  ++.+.+...+|+++.+|.||+|+|...+
T Consensus       222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~--~--~~~~~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTLFLEGVVPINIEK--M--DDKIKVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCeEEEEEE--c--CCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence            34667778888889999999999999987  5  2345566677778999999999997654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.90  E-value=9e-09  Score=99.05  Aligned_cols=66  Identities=24%  Similarity=0.245  Sum_probs=48.1

Q ss_pred             cHHHHHHHHHHHHHHcCC--eEecCceEEEEEeeeccC---CCcEEEEeCC-cc--EEEeCeEEEcCCcChhhhhh
Q 015072          151 KPTKAVSMFQTLAIKNGA--VLRDNTEVKTVLKVKDDV---RGGVTVVTSS-GE--EFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv--~i~~~~~V~~i~~~~~~~---~~~~~v~~~~-g~--~i~ad~vV~A~G~~~~~l~~  218 (413)
                      ...++.++|...++..+.  .|+++++|+++++  .++   .+.|.|++.+ |+  +-.+|.||+|+|.++.+-.+
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~--~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P  155 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVER--DPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP  155 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEE--ETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeee--ccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence            346788888888887764  6889999999998  532   1468887754 33  45689999999998875544

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.89  E-value=9e-08  Score=97.02  Aligned_cols=49  Identities=16%  Similarity=0.049  Sum_probs=39.6

Q ss_pred             ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ++...+.+.|.+.+.+.|++++++++|+++..  .              ...+|.||.|+|.++.
T Consensus        94 i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--~--------------~~~~D~VVgADG~~S~  142 (765)
T PRK08255         94 IGRKRLLNILQARCEELGVKLVFETEVPDDQA--L--------------AADADLVIASDGLNSR  142 (765)
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--h--------------hcCCCEEEEcCCCCHH
Confidence            45678899999999999999999988766543  2              1469999999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=98.89  E-value=3.8e-08  Score=89.84  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ...+||+|||||++|+++|..|+++|++|+++|+...
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~   40 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   40 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence            4578999999999999999999999999999997543

>PRK09897 hypothetical protein; Provisional

Probab=98.88  E-value=7.8e-08  Score=92.30  Aligned_cols=54  Identities=13%  Similarity=0.044  Sum_probs=40.0

Q ss_pred             HHHHHHHHHcC--CeEecCceEEEEEeeeccCCCcEEEEeCC-ccEEEeCeEEEcCCcChh
Q 015072          157 SMFQTLAIKNG--AVLRDNTEVKTVLKVKDDVRGGVTVVTSS-GEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~g--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~-g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.|  +.++.+++|++|..  .  ++++.+.+.+ +..+.+|+||+|+|....
T Consensus       111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~--~--~~g~~V~t~~gg~~i~aD~VVLAtGh~~p  167 (534)
T PRK09897        111 LRLVDQARQQKFAVAVYESCQVTDLQI--T--NAGVMLATNQDLPSETFDLAVIATGHVWP  167 (534)
T ss_pred             HHHHHHHHHcCCeEEEEECCEEEEEEE--e--CCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence            33445555666  67888889999988  6  4567787755 457899999999997543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.86  E-value=9.4e-08  Score=91.67  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .|++|||+|.+|+.+|..|+++|++|+|||++..+
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~g   36 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLG   36 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence            47999999999999999999999999999997654

>TIGR01810 betA choline dehydrogenase

Probab=98.83  E-value=1.1e-07  Score=92.85  Aligned_cols=33  Identities=33%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~   41 (413)
                      |+||||+|.+|+.+|.+|++.| .+|+|||++..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999998 69999999863

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PLN02529 lysine-specific histone demethylase 1

Probab=98.80  E-value=2.2e-07  Score=92.14  Aligned_cols=45  Identities=36%  Similarity=0.356  Sum_probs=40.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      ...||+|||||++|+++|..|+++|++|+|+|+.+..||+..+..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~  203 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQK  203 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeec
Confidence            457999999999999999999999999999999998888765543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.79  E-value=1.6e-07  Score=90.06  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=32.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      +|+|||||++|+++|..|++.|++|+|||++..+|
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG   36 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGG   36 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence            69999999999999999999999999999976543

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.79  E-value=1.8e-07  Score=93.18  Aligned_cols=45  Identities=38%  Similarity=0.373  Sum_probs=40.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      ...+|+|||||++|+++|+.|+++|++|+|+|+....||+..+..
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~  281 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMK  281 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccc
Confidence            457999999999999999999999999999999998888765543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.78  E-value=4.2e-07  Score=87.36  Aligned_cols=58  Identities=10%  Similarity=-0.022  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc---cEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG---EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|+++++++.++++..  .  ++.+.++..++   +++.+|.||+|+|...+
T Consensus       220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~--~--~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQ--I--EAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCceEEEEEE--c--CCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence            45667777888889999999999999987  5  23445544444   36999999999997544

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.77  E-value=1.1e-07  Score=92.30  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=35.5

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            2 EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         2 ~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+..++|+||||+|.+|+++|.+|++.|++|+|+|++.
T Consensus         2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            345678999999999999999999998899999999984

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.76  E-value=1.6e-07  Score=85.40  Aligned_cols=44  Identities=34%  Similarity=0.491  Sum_probs=38.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s   48 (413)
                      ....+|+|||||++|+++|.+|.+.|. +|+|+|..++.||+..+
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t   63 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT   63 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence            345689999999999999999998764 99999999999888554

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.76  E-value=1.3e-07  Score=90.99  Aligned_cols=35  Identities=46%  Similarity=0.622  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +|||+|||||++|+++|..|++.|++|+|||++..
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   37 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPL   37 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            59999999999999999999999999999999433

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.75  E-value=2.2e-07  Score=89.13  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~   39 (413)
                      ++||++|||||.+|..+|..++++ |++|+|||++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            469999999999999999999997 9999999974

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=3.5e-08  Score=91.11  Aligned_cols=154  Identities=23%  Similarity=0.231  Sum_probs=91.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCC-cceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES-RTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ..|||+|||||-||+-+|+..++.|.+++|+--+...-+. .+++.+ |++...                          
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~-msCNPaIGG~~KG--------------------------   55 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGE-MSCNPAIGGPGKG--------------------------   55 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceee-cccccccCCcccc--------------------------
Confidence            3599999999999999999999999999999765433211 111110 111000                          


Q ss_pred             eeEeeeeeeeeCCCChHHHH-HHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLR-SVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                             .+.   .+.+.+. .........++.++.++...               +......-...|-..|.+.+.+.+
T Consensus        56 -------~lv---rEIDALGG~Mg~~~D~~~IQ~r~LN~sK---------------GPAVra~RaQaDk~~Y~~~mk~~l  110 (621)
T COG0445          56 -------HLV---REIDALGGLMGKAADKAGIQFRMLNSSK---------------GPAVRAPRAQADKWLYRRAMKNEL  110 (621)
T ss_pred             -------eeE---EeehhccchHHHhhhhcCCchhhccCCC---------------cchhcchhhhhhHHHHHHHHHHHH
Confidence                   000   0000000 01111222334334443211               111111224455567778888777


Q ss_pred             HHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          164 IKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ++. +..++ ...|+++..  +++...+.|.+.+|..+.|+.||++||.+.+
T Consensus       111 e~~~NL~l~-q~~v~dli~--e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~  159 (621)
T COG0445         111 ENQPNLHLL-QGEVEDLIV--EEGQRVVGVVTADGPEFHAKAVVLTTGTFLR  159 (621)
T ss_pred             hcCCCceeh-HhhhHHHhh--cCCCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence            654 67776 678999888  6433468889999999999999999998755

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.74  E-value=2.4e-07  Score=65.36  Aligned_cols=34  Identities=38%  Similarity=0.601  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .++|||||+.|+-+|..|++.|.+|+|+++.+..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            4899999999999999999999999999997654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.72  E-value=1.3e-07  Score=81.50  Aligned_cols=36  Identities=31%  Similarity=0.535  Sum_probs=32.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      .|+|||+|++|++++..+...|-.|+|+|+....||
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG   46 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG   46 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence            599999999999999999999878999999876654

>PLN03000 amine oxidase

Probab=98.71  E-value=2.3e-07  Score=92.54  Aligned_cols=45  Identities=33%  Similarity=0.347  Sum_probs=40.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      ...+|+|||||++|+.+|+.|++.|++|+|+|+.+..||+..+..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~  227 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKK  227 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceec
Confidence            358999999999999999999999999999999999988876654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.70  E-value=4.9e-07  Score=79.82  Aligned_cols=56  Identities=21%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---Cc--cEEEeCeEEEcCCc
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SG--EEFWGKKCVVTAGA  211 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~vV~A~G~  211 (413)
                      .++.+.+.+.+++.|++++++++|.....  +++ +.+.++..   ++  ++++||.+.+|+|-
T Consensus       252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~--~~d-g~v~i~ve~ak~~k~~tle~DvlLVsiGR  312 (506)
T KOG1335|consen  252 GEISKAFQRVLQKQGIKFKLGTKVTSATR--NGD-GPVEIEVENAKTGKKETLECDVLLVSIGR  312 (506)
T ss_pred             HHHHHHHHHHHHhcCceeEeccEEEEeec--cCC-CceEEEEEecCCCceeEEEeeEEEEEccC
Confidence            46778888889999999999999999999  743 35555432   23  37999999999994

>PRK07846 mycothione reductase; Reviewed

Probab=98.66  E-value=1.9e-06  Score=82.29  Aligned_cols=56  Identities=21%  Similarity=0.195  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+.+. .+.+++++++++|++++.  +  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        208 DISERFTEL-ASKRWDVRLGRNVVGVSQ--D--GSGVTLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HHHHHHHHH-HhcCeEEEeCCEEEEEEE--c--CCEEEEEECCCcEeecCEEEEEECCccC
Confidence            444444443 456899999999999987  6  3456677777878999999999998654

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.65  E-value=2.4e-07  Score=78.46  Aligned_cols=32  Identities=44%  Similarity=0.729  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ||+|||||++|+++|..|++.+++|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            69999999999999999999999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.63  E-value=5.7e-07  Score=88.64  Aligned_cols=34  Identities=32%  Similarity=0.581  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+|||+|||+|.+|..+|..++++|++|+|||++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3689999999999999999999999999999975

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.60  E-value=1.2e-06  Score=75.97  Aligned_cols=36  Identities=47%  Similarity=0.606  Sum_probs=33.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .++||+|||+|++|+.+|.+|+.+|++|+|+|+...
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            468999999999999999999999999999998754

>PLN02785 Protein HOTHEAD

Probab=98.60  E-value=1e-06  Score=86.20  Aligned_cols=35  Identities=37%  Similarity=0.520  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+||+||||||.+|+.+|.+|++ +.+|+|||++..
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            46999999999999999999999 689999999863

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.58  E-value=1.7e-07  Score=96.19  Aligned_cols=38  Identities=34%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      ...+|+|||||+||+++|++|+++|++|+|+|+.+..|
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G  342 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG  342 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence            35799999999999999999999999999999987654

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=8.2e-08  Score=88.90  Aligned_cols=44  Identities=39%  Similarity=0.502  Sum_probs=40.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES   52 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~   52 (413)
                      +|+|+|||+|||++|++|+++|++|+|+|+++..||..+++..+
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~   45 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS   45 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC
Confidence            59999999999999999999999999999999999988876553

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.58  E-value=4.5e-07  Score=86.80  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~   42 (413)
                      +|+|||||++|+++|..|++.+  .+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            5999999999999999999875  589999997653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.55  E-value=3.8e-06  Score=80.01  Aligned_cols=59  Identities=15%  Similarity=0.084  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK  219 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~  219 (413)
                      .++.+.+.+.+++.|++++++++|+++..  .      .+.+++|+++.+|.||+|+|...+ .++..
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~------~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~  248 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAING--N------EVTFKSGKVEHYDMIIEGVGTHPNSKFIES  248 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C------EEEECCCCEEEeCEEEECcCCCcChHHHHh
Confidence            45667778888889999999999999865  3      244566777999999999998654 44443

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.54  E-value=1.8e-06  Score=80.73  Aligned_cols=59  Identities=17%  Similarity=0.213  Sum_probs=46.1

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      .+.+.+++.|++++++++|+++..  +  .+.+.+.+.+|+++.+|.||+|+|...+ .+++..
T Consensus       188 ~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~  247 (377)
T PRK04965        188 RLQHRLTEMGVHLLLKSQLQGLEK--T--DSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA  247 (377)
T ss_pred             HHHHHHHhCCCEEEECCeEEEEEc--c--CCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC
Confidence            344566778999999999999988  6  3456677788888999999999998765 454443

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.53  E-value=4.4e-07  Score=86.02  Aligned_cols=37  Identities=16%  Similarity=0.244  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+.+|||||||.+|+.+|..|.+.+.+|+|||+.+.
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            3467999999999999999999877789999998653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.53  E-value=1e-06  Score=91.81  Aligned_cols=37  Identities=35%  Similarity=0.507  Sum_probs=34.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      .+||+|||||++|+++|+.|++.|++|+|+|+++..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G  199 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG  199 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            5799999999999999999999999999999987654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.52  E-value=2.1e-06  Score=80.75  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=44.0

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhh-hhhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGK-LVKK  219 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~-l~~~  219 (413)
                      .+.+.+++.|++++++++|+++..  +   +.+.+.+.+|+++.+|.||+|+|...+. ++..
T Consensus       191 ~l~~~l~~~GV~i~~~~~V~~i~~--~---~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~  248 (396)
T PRK09754        191 YLLQRHQQAGVRILLNNAIEHVVD--G---EKVELTLQSGETLQADVVIYGIGISANDQLARE  248 (396)
T ss_pred             HHHHHHHHCCCEEEeCCeeEEEEc--C---CEEEEEECCCCEEECCEEEECCCCChhhHHHHh
Confidence            344566778999999999999876  4   3456777888889999999999987653 4443

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.52  E-value=6.4e-07  Score=91.06  Aligned_cols=38  Identities=34%  Similarity=0.449  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      ...+|+|||||++|+++|+.|+++|++|+|+|+.+..|
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG  575 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence            35789999999999999999999999999999987654

>TIGR03452 mycothione_red mycothione reductase

Probab=98.50  E-value=9.1e-06  Score=77.72  Aligned_cols=57  Identities=21%  Similarity=0.240  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+. .+.++++++++.|+++..  +  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       210 ~~~~~~l~~~-~~~gI~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       210 EDISDRFTEI-AKKKWDIRLGRNVTAVEQ--D--GDGVTLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HHHHHHHHHH-HhcCCEEEeCCEEEEEEE--c--CCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence            3444555443 346899999999999987  6  3456676677778999999999997654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.49  E-value=3e-07  Score=84.46  Aligned_cols=46  Identities=28%  Similarity=0.424  Sum_probs=39.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      +||+|||||++|+++|++|++.|.+|+|+|+++..||.+.+....+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g   47 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDET   47 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCC
Confidence            6999999999999999999999999999999887776655443333

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.48  E-value=1.1e-06  Score=82.72  Aligned_cols=45  Identities=22%  Similarity=0.329  Sum_probs=35.9

Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.|++++.++.|+.+..  +  ..  .+.+.+|+++.+|++|+|||+...
T Consensus        69 ~~~~i~~~~g~~V~~id~--~--~~--~v~~~~g~~~~yd~LViATGs~~~  113 (396)
T PRK09754         69 QENNVHLHSGVTIKTLGR--D--TR--ELVLTNGESWHWDQLFIATGAAAR  113 (396)
T ss_pred             HHCCCEEEcCCEEEEEEC--C--CC--EEEECCCCEEEcCEEEEccCCCCC
Confidence            457899999999999988  5  22  355567778999999999998653

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.46  E-value=6.8e-07  Score=83.22  Aligned_cols=47  Identities=19%  Similarity=0.151  Sum_probs=36.0

Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .+.+.+.|++++. .+|++|..  +  ++  .|.+.+|+++++|++|+|+|+..
T Consensus        61 ~~~~~~~gv~~~~-~~v~~id~--~--~~--~V~~~~g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        61 RRLARQAGARFVI-AEATGIDP--D--RR--KVLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             HHHHHhcCCEEEE-EEEEEEec--c--cC--EEEECCCCcccccEEEEccCCCC
Confidence            3455567999875 58999988  5  23  46667787799999999999754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02976 amine oxidase

Probab=98.44  E-value=9.6e-06  Score=84.29  Aligned_cols=43  Identities=33%  Similarity=0.402  Sum_probs=38.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ..++|+|||||++|+++|+.|++.|++|+|+|+.+..||+..+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t  734 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT  734 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence            4589999999999999999999999999999998888776544

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.42  E-value=2.3e-06  Score=79.94  Aligned_cols=46  Identities=22%  Similarity=0.175  Sum_probs=34.9

Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      +.+.+.|++++.+++|+++..  +  +.  .+.+ +++++.+|++|+|||+..
T Consensus        66 ~~~~~~gv~~~~~~~V~~id~--~--~~--~v~~-~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         66 EFAEQFNLRLFPHTWVTDIDA--E--AQ--VVKS-QGNQWQYDKLVLATGASA  111 (377)
T ss_pred             HHHHhCCCEEECCCEEEEEEC--C--CC--EEEE-CCeEEeCCEEEECCCCCC
Confidence            344567999999999999988  5  23  3444 455699999999999754

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=98.40  E-value=0.00013  Score=69.38  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=40.0

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE-eCCccEEEeCeEEEcCCcCh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV-TSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~~i~ad~vV~A~G~~~  213 (413)
                      +.|.+.+++.|++|+++++|++|..  ++  +++.+. +.+|+++.||.||+|+....
T Consensus       201 ~~l~~~l~~~g~~i~~~~~V~~i~~--~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       201 EPARRWLDSRGGEVRLGTRVRSIEA--NA--GGIRALVLSGGETLPADAVVLAVPPRH  254 (419)
T ss_pred             HHHHHHHHHcCCEEEcCCeeeEEEE--cC--CcceEEEecCCccccCCEEEEcCCHHH
Confidence            4467777778999999999999998  73  344332 23566799999999988654

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.39  E-value=1.7e-05  Score=76.04  Aligned_cols=39  Identities=33%  Similarity=0.405  Sum_probs=35.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ..++|+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG  177 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG  177 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCc
Confidence            457999999999999999999999999999999876543

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=8.6e-07  Score=76.99  Aligned_cols=48  Identities=29%  Similarity=0.401  Sum_probs=37.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      ..+||.+|||||.+|+++|.+.+..|.+|.++|--.+. ..+.+++.+|
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~Pt-P~GtsWGlGG   64 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPT-PQGTSWGLGG   64 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccC-CCCCccccCc
Confidence            35799999999999999999999999999999954332 1345554433

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.37  E-value=1e-06  Score=89.60  Aligned_cols=38  Identities=34%  Similarity=0.420  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      ..++|+|||||++|+++|+.|+++|++|+|+|+.+..|
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G  467 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG  467 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            45799999999999999999999999999999865543

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.35  E-value=1.7e-06  Score=74.84  Aligned_cols=43  Identities=28%  Similarity=0.506  Sum_probs=38.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      +|++|||+|++|+.+|..|++.|++|+||||.+..||-+-+..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~   44 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEA   44 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccccc
Confidence            7999999999999999999999999999999998877655433

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=98.34  E-value=1.3e-05  Score=76.30  Aligned_cols=38  Identities=34%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL   42 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~   42 (413)
                      ..+||.||||||.+|+.+|..|++. .++|+|+|++...
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            3579999999999999999999996 6899999998644

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=4.1e-06  Score=68.56  Aligned_cols=58  Identities=12%  Similarity=0.123  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l  216 (413)
                      ..++..|+++..+.|.+|+. ..|.++..  .  ...+.+.++.+. +.+|.||+|+|+-+.++
T Consensus        70 ~~l~d~mrkqs~r~Gt~i~t-EtVskv~~--s--skpF~l~td~~~-v~~~avI~atGAsAkRl  127 (322)
T KOG0404|consen   70 PELMDKMRKQSERFGTEIIT-ETVSKVDL--S--SKPFKLWTDARP-VTADAVILATGASAKRL  127 (322)
T ss_pred             HHHHHHHHHHHHhhcceeee-eehhhccc--c--CCCeEEEecCCc-eeeeeEEEecccceeee
Confidence            57888899999999999985 45888888  6  577888886665 99999999999987654

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.32  E-value=6.6e-06  Score=71.92  Aligned_cols=56  Identities=21%  Similarity=0.135  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      .+...+.+.++..|++++.++.++++.+  .+. +...+.++.+....+|.+++|+|-.
T Consensus       231 ~i~~~v~~~~~~~ginvh~~s~~~~v~K--~~~-g~~~~i~~~~~i~~vd~llwAiGR~  286 (478)
T KOG0405|consen  231 MISDLVTEHLEGRGINVHKNSSVTKVIK--TDD-GLELVITSHGTIEDVDTLLWAIGRK  286 (478)
T ss_pred             HHHHHHHHHhhhcceeecccccceeeee--cCC-CceEEEEeccccccccEEEEEecCC
Confidence            3445566778889999999999999998  632 4455556667655699999999964

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.32  E-value=2.3e-06  Score=87.08  Aligned_cols=46  Identities=22%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .+.+.|++++.+++|++|..  .  .  ..|.+.+|+++.+|++|+|||...
T Consensus        63 ~~~~~gv~~~~g~~V~~Id~--~--~--k~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        63 WYEKHGITLYTGETVIQIDT--D--Q--KQVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HHHHCCCEEEcCCeEEEEEC--C--C--CEEEECCCcEeeCCEEEECCCCCc
Confidence            34567999999999999988  5  2  246677887899999999999754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.29  E-value=1.2e-05  Score=76.77  Aligned_cols=55  Identities=13%  Similarity=-0.008  Sum_probs=41.5

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc-cEEEeCeEEEcCCcChh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG-EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+++.|++++.++.|+++..  +++ +.+.+..+++ +++.+|.||+|+|...+
T Consensus       211 ~~~~~~l~~~gI~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       211 ETITEEYEKEGINVHKLSKPVKVEK--TVE-GKLVIHFEDGKSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEE--eCC-ceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence            3445566778999999999999987  522 2355666667 46999999999997654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.29  E-value=4.7e-06  Score=84.98  Aligned_cols=46  Identities=15%  Similarity=0.266  Sum_probs=36.6

Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .+.+.|++++.++.|++|..  .  .  ..|.+.+|+++.+|++|+|||...
T Consensus        68 ~~~~~gI~~~~g~~V~~Id~--~--~--~~V~~~~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         68 FYEKHGIKVLVGERAITINR--Q--E--KVIHSSAGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             HHHhCCCEEEcCCEEEEEeC--C--C--cEEEECCCcEEECCEEEECCCCCc
Confidence            34557999999999999987  5  2  245667787899999999999754

>PLN02507 glutathione reductase

Probab=98.29  E-value=1.2e-05  Score=77.68  Aligned_cols=53  Identities=25%  Similarity=0.367  Sum_probs=42.3

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+++.|++++.++.|+++..  .  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       249 ~l~~~l~~~GI~i~~~~~V~~i~~--~--~~~~~v~~~~g~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        249 VVARNLEGRGINLHPRTNLTQLTK--T--EGGIKVITDHGEEFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEE--e--CCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence            344556778999999999999987  5  3456677777778999999999997654

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.28  E-value=1.5e-05  Score=73.40  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc---CCcEEEEcccCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR---GQKTLLLEQFDFLH   43 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~---g~~V~lvE~~~~~~   43 (413)
                      ++|+|||+|.+|+.+|.+|.+.   ..+|.|+|+.+..|
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G   40 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG   40 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence            6899999999999999999986   22499999987664

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.27  E-value=1.4e-05  Score=81.62  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=46.1

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK  219 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~  219 (413)
                      ..+.+.+++.|+++++++.|++|..  ++......+.+.+|+++.+|.||+|+|...+ .++..
T Consensus       191 ~~l~~~L~~~GV~v~~~~~v~~I~~--~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~  252 (847)
T PRK14989        191 EQLRRKIESMGVRVHTSKNTLEIVQ--EGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ  252 (847)
T ss_pred             HHHHHHHHHCCCEEEcCCeEEEEEe--cCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence            3455667788999999999999976  5322345677788889999999999998765 34443

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.27  E-value=1.6e-05  Score=76.08  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      .+.+.+.+++.|++++.+++|+++..  +  +....+.++++ ++.+|.||+|+|...+ .+++..
T Consensus       194 ~~~l~~~l~~~gI~v~~~~~v~~i~~--~--~~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~  254 (444)
T PRK09564        194 TDVMEEELRENGVELHLNEFVKSLIG--E--DKVEGVVTDKG-EYEADVVIVATGVKPNTEFLEDT  254 (444)
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEec--C--CcEEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhc
Confidence            34455667788999999999999976  5  23344555555 5999999999998754 455543

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.27  E-value=1.4e-05  Score=76.39  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=41.1

Q ss_pred             HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.+.+.+.|++++.++.|+++..  .  ++.+.+.+.+++++.+|.||+|+|...+
T Consensus       213 l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       213 LARNMEGRGIRIHPQTSLTSITK--T--DDGLKVTLSHGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEE--c--CCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence            44556678999999999999987  5  3446666667778999999999997644

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.26  E-value=1.9e-05  Score=75.25  Aligned_cols=57  Identities=23%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      .+.+.+++.|++++.++.|+++..  +   +.+ +...+|+++.+|.||+|+|...+ .++..+
T Consensus       184 ~~~~~l~~~gV~v~~~~~v~~i~~--~---~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (427)
T TIGR03385       184 IVEEELKKHEINLRLNEEVDSIEG--E---ERV-KVFTSGGVYQADMVILATGIKPNSELAKDS  241 (427)
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEec--C---CCE-EEEcCCCEEEeCEEEECCCccCCHHHHHhc
Confidence            344556778999999999999977  5   223 44556778999999999998754 455543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.24  E-value=2.5e-05  Score=74.93  Aligned_cols=53  Identities=9%  Similarity=0.077  Sum_probs=38.6

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc-cEEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG-EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+++.|++++++++|+++..  +  +..+.+...++ +++.+|.||+|+|...+
T Consensus       216 ~l~~~L~~~GI~i~~~~~V~~i~~--~--~~~v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        216 ILREKLENDGVKIFTGAALKGLNS--Y--KKQALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEE--c--CCEEEEEECCceEEEEeCEEEEecCCccC
Confidence            344566778999999999999987  5  33444543322 26999999999997654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=3.2e-06  Score=76.87  Aligned_cols=35  Identities=40%  Similarity=0.600  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|||+|||||-||+-+|...++.|.+.+|+..+-
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l   61 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL   61 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence            46899999999999999999999999999998664

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.24  E-value=2e-05  Score=75.75  Aligned_cols=53  Identities=15%  Similarity=0.333  Sum_probs=42.1

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       223 ~l~~~L~~~gV~i~~~~~v~~v~~--~--~~~~~v~~~~g~~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        223 VLEEVFARRGMTVLKRSRAESVER--T--GDGVVVTLTDGRTVEGSHALMAVGSVPN  275 (466)
T ss_pred             HHHHHHHHCCcEEEcCCEEEEEEE--e--CCEEEEEECCCcEEEecEEEEeecCCcC
Confidence            344566778999999999999987  5  3456676677888999999999998655

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.24  E-value=1.6e-05  Score=81.11  Aligned_cols=58  Identities=12%  Similarity=0.129  Sum_probs=44.5

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK  219 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~  219 (413)
                      .+.+.+++.|+++++++.|+++..  +  +....+.+++|+++.+|.||+|+|...+ .++..
T Consensus       187 ~l~~~l~~~GV~v~~~~~v~~i~~--~--~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~  245 (785)
T TIGR02374       187 LLQRELEQKGLTFLLEKDTVEIVG--A--TKADRIRFKDGSSLEADLIVMAAGIRPNDELAVS  245 (785)
T ss_pred             HHHHHHHHcCCEEEeCCceEEEEc--C--CceEEEEECCCCEEEcCEEEECCCCCcCcHHHHh
Confidence            344566778999999999999977  5  3445677788888999999999998654 34443

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.23  E-value=2e-05  Score=76.00  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||||.+|+.+|..|++.|.+|+|+|+.+.
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~  214 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR  214 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            5899999999999999999999999999998643

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.20  E-value=1.4e-05  Score=76.23  Aligned_cols=51  Identities=29%  Similarity=0.362  Sum_probs=40.3

Q ss_pred             HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      +...+...|.+|+++++|++|+.  +  ++.+.+.+.+|+++.||+||+|+....
T Consensus       215 ~~~~~~~~g~~i~l~~~V~~I~~--~--~~~v~v~~~~g~~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  215 LALAAEELGGEIRLNTPVTRIER--E--DGGVTVTTEDGETIEADAVISAVPPSV  265 (450)
T ss_dssp             HHHHHHHHGGGEESSEEEEEEEE--E--SSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred             HHHHHhhcCceeecCCcceeccc--c--ccccccccccceEEecceeeecCchhh
Confidence            33444455779999999999999  7  578889999998899999999998754

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=4.8e-06  Score=72.74  Aligned_cols=58  Identities=12%  Similarity=0.171  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      .++...|.+..+++.+++..-.+++++++  .... +-..|++.+|-.++++.||++||+.
T Consensus       266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~--a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         266 PKLAAALEAHVKQYDVDVMNLQRASKLEP--AAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             hHHHHHHHHHHhhcCchhhhhhhhhccee--cCCCCccEEEEecCCceeccceEEEecCcc
Confidence            56777888888888999988888888888  5332 4678889999999999999999984

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.18  E-value=3.1e-05  Score=73.55  Aligned_cols=56  Identities=30%  Similarity=0.287  Sum_probs=43.7

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +.+.+.+++.|++++++++|+++..  +      .+.+++|+++.+|.||+|+|...+.+...+
T Consensus       232 ~~~~~~L~~~gV~v~~~~~v~~v~~--~------~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~  287 (424)
T PTZ00318        232 KYGQRRLRRLGVDIRTKTAVKEVLD--K------EVVLKDGEVIPTGLVVWSTGVGPGPLTKQL  287 (424)
T ss_pred             HHHHHHHHHCCCEEEeCCeEEEEeC--C------EEEECCCCEEEccEEEEccCCCCcchhhhc
Confidence            3445667789999999999998876  4      245678888999999999998766665554

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.17  E-value=3.2e-05  Score=70.94  Aligned_cols=76  Identities=12%  Similarity=0.186  Sum_probs=55.9

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc-cEEEeCeEEEcCCcChh----------hhhhh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG-EEFWGKKCVVTAGAWVG----------KLVKK  219 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~vV~A~G~~~~----------~l~~~  219 (413)
                      .+..++..|...+++.||+|+++++|++| .  +   +.+.+.+.++ ..++||+||+|||..+-          .+++.
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~---~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~  157 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--G---GTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQ  157 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--C---CcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHH
Confidence            35789999999999999999999999999 4  3   2466766433 36999999999998652          45566


Q ss_pred             hcCCC-cceeEEEEE
Q 015072          220 ISGLE-LPIQAVETS  233 (413)
Q Consensus       220 ~~g~~-~p~~~~~~~  233 (413)
                      + |.. +|..|.-..
T Consensus       158 l-Gh~i~~~~PaL~p  171 (376)
T TIGR03862       158 R-GVSVAPFAPANCG  171 (376)
T ss_pred             C-CCcccCCcCeece
Confidence            6 543 455554443

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.14  E-value=4.1e-05  Score=73.59  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~  208 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR  208 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            36799999999999999999999999999998543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.13  E-value=4.3e-05  Score=73.51  Aligned_cols=55  Identities=16%  Similarity=0.104  Sum_probs=41.8

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.+.+.+++.|+++++++.|+++..  .++ +...+.+.+++++.+|.||+|+|...+
T Consensus       235 ~~l~~~L~~~GI~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       235 KELTKQLRANGINIMTNENPAKVTL--NAD-GSKHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEE--cCC-ceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            4455667778999999999999987  522 335566666778999999999997644

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.10  E-value=4.8e-05  Score=73.37  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|+|||+|..|+.+|..|++.|.+|+|+++.+
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~  216 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP  216 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            589999999999999999999999999999864

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.09  E-value=4.1e-06  Score=76.44  Aligned_cols=41  Identities=34%  Similarity=0.472  Sum_probs=37.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS   47 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~   47 (413)
                      ..+++|||||++|+++|+.|++.|++|.||||.+..||+.+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma  164 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA  164 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence            46899999999999999999999999999999998887643

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.08  E-value=4.3e-06  Score=77.15  Aligned_cols=35  Identities=49%  Similarity=0.554  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            68999999999999999999999999999987654

>PTZ00058 glutathione reductase; Provisional

Probab=98.06  E-value=7e-05  Score=73.02  Aligned_cols=34  Identities=9%  Similarity=0.229  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+++.+
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~  270 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN  270 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence            4579999999999999999999999999999864

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.03  E-value=8.6e-05  Score=72.99  Aligned_cols=61  Identities=18%  Similarity=0.175  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ...++..|.+.+.+.|++++.++.++++..  ++++..+.+.   ..+|+  .+.|+.||+|||++..
T Consensus       125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  190 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVK--NQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHHHHHHHHHhccCCEEEECcEEEEEEE--cCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence            467888898888888999999999999987  5323333332   34565  6889999999999875

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.02  E-value=6.5e-06  Score=84.29  Aligned_cols=39  Identities=33%  Similarity=0.416  Sum_probs=35.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~   45 (413)
                      .++|+|||||++|+++|+.|+++|++|+|+|+.+..||.
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~  575 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV  575 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence            479999999999999999999999999999998776543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.01  E-value=0.00032  Score=65.38  Aligned_cols=44  Identities=30%  Similarity=0.403  Sum_probs=36.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~----g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      ..++=|||+|+++|++|.+|-+.    |.+|+|+|+.+..||...+.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g   49 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG   49 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence            35688999999999999999985    679999999998876544433

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.01  E-value=2.8e-05  Score=71.01  Aligned_cols=35  Identities=34%  Similarity=0.414  Sum_probs=27.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~   41 (413)
                      .+|+++||.|++++++|..|.+.+ .++..+|+.+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            489999999999999999999986 89999998764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.97  E-value=0.00011  Score=70.73  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||||..|+-+|..|++.|.+|+|||+.+.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  208 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            5799999999999999999999999999998653

>PRK12831 putative oxidoreductase; Provisional

Probab=97.96  E-value=1.1e-05  Score=77.19  Aligned_cols=39  Identities=28%  Similarity=0.329  Sum_probs=35.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      +.+||+|||||++|+++|+.|+++|++|+|+|+.+..||
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG  177 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG  177 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            468999999999999999999999999999999776543

>PLN02546 glutathione reductase

Probab=97.91  E-value=0.00018  Score=70.20  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=39.8

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+++.|+++++++.|+++..  .+ ++.+.+.+.+++...+|.||+|+|...+
T Consensus       298 ~l~~~L~~~GV~i~~~~~v~~i~~--~~-~g~v~v~~~~g~~~~~D~Viva~G~~Pn  351 (558)
T PLN02546        298 FVAEQMSLRGIEFHTEESPQAIIK--SA-DGSLSLKTNKGTVEGFSHVMFATGRKPN  351 (558)
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEEE--cC-CCEEEEEECCeEEEecCEEEEeeccccC
Confidence            445566778999999999999986  52 2345566666654558999999998655

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.90  E-value=0.00017  Score=71.48  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||||..|+-.|..|++.|.+|+|||+.+.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~  346 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ  346 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence            4799999999999999999999999999998654

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.90  E-value=0.00067  Score=61.21  Aligned_cols=61  Identities=15%  Similarity=0.109  Sum_probs=40.9

Q ss_pred             HHcCCeEecCceEEEEEee----eccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcc
Q 015072          164 IKNGAVLRDNTEVKTVLKV----KDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELP  226 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~----~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p  226 (413)
                      +..++++...++|.++..-    +.++..-..+.+.+|..+..|.+|-|.|..+.  .++.+++..+
T Consensus       164 ~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~--vR~~snid~~  228 (481)
T KOG3855|consen  164 ESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSV--VRKASNIDVA  228 (481)
T ss_pred             hcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccch--hhhhcCCCcc
Confidence            3457999988888877650    01112345567788989999999999997653  4445455444

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.90  E-value=2.9e-05  Score=70.04  Aligned_cols=43  Identities=37%  Similarity=0.411  Sum_probs=37.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCc--EEEEcccCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQK--TLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~--V~lvE~~~~~~~~~~s   48 (413)
                      ..++|+|+|||++|+++||+|++++-+  |+|+|+.++.||...|
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            457899999999999999999999654  5669999999887766

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.89  E-value=0.00037  Score=65.16  Aligned_cols=45  Identities=31%  Similarity=0.529  Sum_probs=33.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      |..+|||+|+|.|+.-+.+|-.|++.|++|+.+|+++.-|+..++
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as   45 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS   45 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence            456899999999999999999999999999999999988765544

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.87  E-value=1.6e-05  Score=73.95  Aligned_cols=35  Identities=40%  Similarity=0.501  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      +||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            47999999999999999999999999999987654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.86  E-value=2.4e-05  Score=74.75  Aligned_cols=39  Identities=31%  Similarity=0.384  Sum_probs=35.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ..++|+|||||++|+++|+.|+++|++|+|+|+.+..++
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG  170 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG  170 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            457999999999999999999999999999999876543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.84  E-value=0.00016  Score=66.41  Aligned_cols=58  Identities=14%  Similarity=0.066  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          155 AVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       155 ~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.+.+.+.++++|++++.++.+.++..  +.++....|.+.+|+++.||.||+++|+...
T Consensus       257 i~~~~~~y~e~kgVk~~~~t~~s~l~~--~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  257 IGQFYEDYYENKGVKFYLGTVVSSLEG--NSDGEVSEVKLKDGKTLEADLVVVGIGIKPN  314 (478)
T ss_pred             HHHHHHHHHHhcCeEEEEecceeeccc--CCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence            344566778889999999999999998  6444667788899999999999999998654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.84  E-value=0.00018  Score=68.20  Aligned_cols=104  Identities=33%  Similarity=0.315  Sum_probs=77.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeE
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVY   87 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (413)
                      .+++|||+|.+|+.+|..|+++|++|+++|+.+..++...                                        
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~----------------------------------------  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL----------------------------------------  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence            6899999999999999999999999999999876531000                                        


Q ss_pred             eeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcC
Q 015072           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNG  167 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  167 (413)
                                                       .                               ..+...+.+.+++.|
T Consensus       177 ---------------------------------~-------------------------------~~~~~~~~~~l~~~g  192 (415)
T COG0446         177 ---------------------------------D-------------------------------PEVAEELAELLEKYG  192 (415)
T ss_pred             ---------------------------------h-------------------------------HHHHHHHHHHHHHCC
Confidence                                             0                               012234456677789


Q ss_pred             CeEecCceEEEEEeeeccCCCcEE--EEeCCccEEEeCeEEEcCCcChhhhhh
Q 015072          168 AVLRDNTEVKTVLKVKDDVRGGVT--VVTSSGEEFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       168 v~i~~~~~V~~i~~~~~~~~~~~~--v~~~~g~~i~ad~vV~A~G~~~~~l~~  218 (413)
                      ++++.++.+.++..  .++ ....  +...+++.+++|.+++++|...+..+.
T Consensus       193 i~~~~~~~~~~i~~--~~~-~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~  242 (415)
T COG0446         193 VELLLGTKVVGVEG--KGN-TLVVERVVGIDGEEIKADLVIIGPGERPNVVLA  242 (415)
T ss_pred             cEEEeCCceEEEEc--ccC-cceeeEEEEeCCcEEEeeEEEEeecccccHHHH
Confidence            99999999999988  521 1111  456677779999999999987753333

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.84  E-value=0.0003  Score=67.73  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  203 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR  203 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            35799999999999999999999999999998643

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.83  E-value=2.5e-05  Score=74.44  Aligned_cols=40  Identities=30%  Similarity=0.363  Sum_probs=35.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHH--cCCcEEEEcccCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAK--RGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~--~g~~V~lvE~~~~~~~~   45 (413)
                      ...+|+|||||++|+.+|+.|++  .|++|+|+|+.+.++|.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl   66 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL   66 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence            35789999999999999999997  69999999999877643

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.75  E-value=4.2e-05  Score=73.61  Aligned_cols=39  Identities=38%  Similarity=0.467  Sum_probs=35.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ..++|+|||||++|+++|..|+++|++|+|+|+.+..++
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG  180 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG  180 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            347999999999999999999999999999999876653

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.74  E-value=3.8e-05  Score=77.01  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ...+|+|||||++|+++|+.|++.|++|+|+|+.+..||
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG  364 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG  364 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            357999999999999999999999999999999876654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.73  E-value=3.5e-05  Score=80.23  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      +..+|+|||||++|+++|+.|+++|++|+|+|+.+..|+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG  467 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG  467 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcc
Confidence            357999999999999999999999999999999877654

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.70  E-value=5e-05  Score=76.81  Aligned_cols=36  Identities=25%  Similarity=0.560  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ...+|+|||||++|+++|++|+++|++|+|+|+.+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i  417 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI  417 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence            457899999999999999999999999999998643

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.70  E-value=0.00065  Score=62.15  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=27.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      ....|+|||||.++.-++..|.+++.  +|+++-++.
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            35789999999999999999999864  899998764

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.67  E-value=5.5e-05  Score=72.90  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=33.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      |||+|||+|++|+++|+.|+++|++|+|||++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            699999999999999999999999999999987664

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.65  E-value=0.001  Score=62.01  Aligned_cols=54  Identities=11%  Similarity=0.191  Sum_probs=41.5

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKK  219 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~  219 (413)
                      .+.+.+++.|++++.+++|+++..  +      .+.+.+|+++.+|.||+|+|...+.++..
T Consensus       196 ~~~~~l~~~gV~v~~~~~v~~i~~--~------~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  249 (364)
T TIGR03169       196 LVLRLLARRGIEVHEGAPVTRGPD--G------ALILADGRTLPADAILWATGARAPPWLAE  249 (364)
T ss_pred             HHHHHHHHCCCEEEeCCeeEEEcC--C------eEEeCCCCEEecCEEEEccCCChhhHHHH
Confidence            344566778999999999998855  2      35566787899999999999877655544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.64  E-value=8.6e-05  Score=68.69  Aligned_cols=39  Identities=26%  Similarity=0.234  Sum_probs=35.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ...+|+|||+|++|+++|..|+++|++|+|+|+.+..++
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg   55 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG   55 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence            457999999999999999999999999999999877653

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.64  E-value=0.00017  Score=72.10  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ...+|+|||+|++|+++|+.|+++|++|+|+|+.+..++
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG  347 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG  347 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence            357899999999999999999999999999999887654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.63  E-value=7.1e-05  Score=74.83  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=34.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      .++|+|||||++|+++|+.|++.|++|+|+|+.+..||
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG  230 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG  230 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            47899999999999999999999999999999877654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.59  E-value=9.6e-05  Score=70.92  Aligned_cols=39  Identities=26%  Similarity=0.361  Sum_probs=35.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      +..+|+|||+|++|+++|+.|+++|++|+|+|+.+..+|
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG  178 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG  178 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence            457899999999999999999999999999999877654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.59  E-value=0.0001  Score=69.42  Aligned_cols=39  Identities=21%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             CccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccCCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~-~~g~~V~lvE~~~~~~~~   45 (413)
                      ...|+|||||++|+.+|.+|+ +.|++|+|+|+.+.++|.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL   78 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL   78 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence            468999999999999999765 569999999999988643

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.57  E-value=0.007  Score=55.17  Aligned_cols=102  Identities=17%  Similarity=0.172  Sum_probs=67.6

Q ss_pred             HHHHHhcCCcccCCCCeEEEEecCCeeec--HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--
Q 015072          123 RQVLQKYSGRIEIPENWVGVTTELGGVIK--PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--  198 (413)
Q Consensus       123 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--  198 (413)
                      +++.+.+|. +. ......+....+..++  ..++.....+.+.+.|+++..++.|.++..  .    ...+.+.+|+  
T Consensus       243 ~Dl~k~yp~-l~-~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~----~I~~~~~~g~~~  314 (491)
T KOG2495|consen  243 EDLRKIYPE-LK-KDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--K----TIHAKTKDGEIE  314 (491)
T ss_pred             HHHHHhhhc-ch-hheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecC--c----EEEEEcCCCcee
Confidence            355666666 22 2233344444444443  356677777778888999999999999877  4    4556666666  


Q ss_pred             EEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEE
Q 015072          199 EFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETS  233 (413)
Q Consensus       199 ~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~  233 (413)
                      +|.+-.+|+|||....++.+.+ ...++-...|+-
T Consensus       315 ~iPYG~lVWatG~~~rp~~k~l-m~~i~e~~rr~L  348 (491)
T KOG2495|consen  315 EIPYGLLVWATGNGPRPVIKDL-MKQIDEQGRRGL  348 (491)
T ss_pred             eecceEEEecCCCCCchhhhhH-hhcCCccCceee
Confidence            7888999999999988887777 444444433343

>PRK10262 thioredoxin reductase; Provisional

Probab=97.50  E-value=0.0011  Score=60.55  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+++|||+|..|+-+|..|++.+.+|+++++.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            579999999999999999999999999998853

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.47  E-value=0.00017  Score=69.57  Aligned_cols=37  Identities=35%  Similarity=0.400  Sum_probs=34.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      ..+|+|||||++|+++|..|+++|++|+|+|+.+..+
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g  179 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG  179 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            4799999999999999999999999999999987654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.46  E-value=0.0011  Score=63.46  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+|+|||||..|+-+|..|.+.|.+|+|+++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~  304 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRR  304 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence            57999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=97.43  E-value=0.004  Score=61.38  Aligned_cols=61  Identities=16%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE---eCCcc--EEEeCeEEEcCCcChhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV---TSSGE--EFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~~  215 (413)
                      ...++..|.+.+.+.|++|+.++.|++|..  +++ ..+.+.   ..+|+  .+.|+.||+|||++...
T Consensus       118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~g-~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       118 GHAILHTLYQQNLKADTSFFNEYFALDLLM--EDG-ECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeccEEEEEEe--eCC-EEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence            356888898988889999999999999998  632 333332   34565  68999999999998753

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.42  E-value=0.0011  Score=64.57  Aligned_cols=32  Identities=38%  Similarity=0.365  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+|+|||||..|+-+|..|++.|.+|+|+++.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~  384 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA  384 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence            58999999999999999999999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.42  E-value=0.0013  Score=59.25  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~  173 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR  173 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence            57999999999999999999999999999874

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.38  E-value=4.7e-05  Score=61.95  Aligned_cols=38  Identities=39%  Similarity=0.459  Sum_probs=33.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~   44 (413)
                      +.||+|||+|.+|+++||.++++  ..+|.|||..-.+||
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG  115 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG  115 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence            46999999999999999999965  689999999866653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.36  E-value=0.00026  Score=69.88  Aligned_cols=39  Identities=33%  Similarity=0.406  Sum_probs=35.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ...+|+|||+|++|+++|+.|+++|++|+|+|+.+..|+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG  174 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG  174 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            346899999999999999999999999999999877654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.32  E-value=0.0014  Score=60.63  Aligned_cols=32  Identities=31%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~~   39 (413)
                      ..++|||+|..|+-+|..|.+.|.+ |+|+++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            4799999999999999999999987 9999874

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.00038  Score=62.05  Aligned_cols=41  Identities=24%  Similarity=0.278  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHR   45 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~   45 (413)
                      ..+..|+|||+|+||+.+|.+|.++  +.+|.|+|+.+.+.|.
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL   60 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL   60 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce
Confidence            3456999999999999999999995  6899999999988653

>PRK13984 putative oxidoreductase; Provisional

Probab=97.25  E-value=0.00043  Score=68.98  Aligned_cols=39  Identities=36%  Similarity=0.414  Sum_probs=35.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      +..+|+|||+|++|+++|..|+++|++|+|+|+.+..++
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG  320 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG  320 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            457899999999999999999999999999999876643

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.21  E-value=0.0037  Score=56.64  Aligned_cols=39  Identities=31%  Similarity=0.343  Sum_probs=34.0

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~   42 (413)
                      |+..+|++.||-|+.-+++|..|.+.+ .++..+|+.+.-
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            556799999999999999999999975 789999997643

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.21  E-value=0.0057  Score=53.47  Aligned_cols=36  Identities=28%  Similarity=0.488  Sum_probs=31.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g~-~V~lvE~~~   40 (413)
                      .+++.|+|||||.+|++.|..+.++ |. +|.|||..+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            3578999999999999999999886 43 899999764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.20  E-value=0.00036  Score=65.94  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=35.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ..+|+|||+|++|+++|..|++.|++|+++|+.+..+|
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG  160 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG  160 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence            36899999999999999999999999999999887754

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.07  E-value=0.0023  Score=62.26  Aligned_cols=58  Identities=14%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK  219 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~  219 (413)
                      .|.+.+.+.|+++++++..+++..  .  .....++.+||+.+.||.||+|+|..-+ .+...
T Consensus       192 lL~~~le~~Gi~~~l~~~t~ei~g--~--~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~  250 (793)
T COG1251         192 LLRRKLEDLGIKVLLEKNTEEIVG--E--DKVEGVRFADGTEIPADLVVMAVGIRPNDELAKE  250 (793)
T ss_pred             HHHHHHHhhcceeecccchhhhhc--C--cceeeEeecCCCcccceeEEEecccccccHhHHh
Confidence            355667788999999888888876  5  4677889999999999999999998654 44443

>PRK12831 putative oxidoreductase; Provisional

Probab=97.06  E-value=0.0066  Score=58.32  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+|+|||||.+|+-+|..|.+.|.+|+|+++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            58999999999999999999999999999874

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.00094  Score=58.44  Aligned_cols=35  Identities=43%  Similarity=0.600  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..|.|||||++|.-+||+++++|..|.|.|..+.-
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            56999999999999999999999999999987654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.90  E-value=0.0072  Score=59.05  Aligned_cols=33  Identities=33%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|+|||||.+|+-+|..|+..+.+|+|+++.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~  384 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP  384 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence            589999999999999999999999999998653

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.077  Score=48.20  Aligned_cols=44  Identities=30%  Similarity=0.514  Sum_probs=39.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ..+|||+|+|-|+.=+.++..|+..|.+|+.+|+++.-|+..+|
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sas   45 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESAS   45 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccc
Confidence            44699999999999999999999999999999999988765554

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.66  E-value=0.0023  Score=52.80  Aligned_cols=32  Identities=34%  Similarity=0.516  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|.|||+|..|...|..++..|++|+|+|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            38999999999999999999999999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.63  E-value=0.024  Score=59.79  Aligned_cols=57  Identities=18%  Similarity=0.110  Sum_probs=38.8

Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEe--CCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT--SSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      .+++.|++++.++.|+++..  ++.-..+.+..  .+++++.+|.|+++.|...+ .+...+
T Consensus       360 ~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~l  419 (985)
T TIGR01372       360 EARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQR  419 (985)
T ss_pred             HHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhc
Confidence            34567899999999999877  52112344442  24557999999999997654 454444

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.52  E-value=0.025  Score=58.01  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~~   39 (413)
                      .+|+|||||.+|+-+|..|.+.|.+ |+|+++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~  603 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR  603 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence            5799999999999999999999987 9999875

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.48  E-value=0.0036  Score=50.38  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||||..|.++|..|+++|++|+|+.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999998863

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.48  E-value=0.0045  Score=55.86  Aligned_cols=40  Identities=15%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |+..+.-..|.|||+|..|...|..++.+|++|+++|..+
T Consensus         1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4433333569999999999999999999999999999864

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.44  E-value=0.0032  Score=63.85  Aligned_cols=38  Identities=32%  Similarity=0.391  Sum_probs=35.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      -..|+|||.|++|+.+|-.|-+.|+.|+|+|+.++.||
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            36899999999999999999999999999999988754

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.44  E-value=0.031  Score=53.98  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      ..|+|||||..|+-+|..+.+.|. +|++++..
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence            579999999999999999988886 78877654

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.41  E-value=0.0034  Score=51.93  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=26.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|.|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            49999999999999999999999999999865

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.30  E-value=0.0064  Score=48.63  Aligned_cols=31  Identities=32%  Similarity=0.580  Sum_probs=29.2

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072           10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |+|+|+|..|+..|++|++.|.+|+++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.30  E-value=0.031  Score=53.81  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..++|||+|..|+-+|..+.+.|. +|+||++.+
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            579999999999999999999985 799998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.24  E-value=0.0057  Score=52.41  Aligned_cols=33  Identities=30%  Similarity=0.627  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +++|||+|-.|.++|..|.+.|++|++||+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            599999999999999999999999999998754

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.19  E-value=0.0069  Score=54.06  Aligned_cols=34  Identities=38%  Similarity=0.422  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..|.|||+|..|...|..|++.|++|+++|..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            3799999999999999999999999999998643

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.15  E-value=0.022  Score=52.84  Aligned_cols=44  Identities=23%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCc
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGA  211 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~  211 (413)
                      ..++.|+++++++.|+.+..  .    .-++.+.+|+.++++++|+|||.
T Consensus       136 ~Yke~gIe~~~~t~v~~~D~--~----~K~l~~~~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  136 FYKEKGIELILGTSVVKADL--A----SKTLVLGNGETLKYSKLIIATGS  179 (478)
T ss_pred             hHhhcCceEEEcceeEEeec--c----ccEEEeCCCceeecceEEEeecC
Confidence            34568999999999999988  5    23577889999999999999998

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.13  E-value=0.042  Score=55.38  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      .+|+|||||..|+-+|..+.+.|. +|+++.+.
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~  501 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR  501 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence            479999999999999999999986 69998875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.07  E-value=0.0097  Score=54.05  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++.|+|||+|..|...|..|++.|++|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3579999999999999999999999999998854

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.04  E-value=0.0075  Score=54.63  Aligned_cols=32  Identities=28%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||+|..|.+.|..|+++|++|+++|+.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            59999999999999999999999999999864

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.96  E-value=0.073  Score=52.29  Aligned_cols=47  Identities=19%  Similarity=0.269  Sum_probs=39.0

Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      +..+++|++++.+.+|+.|..  +  ++  .|.++.|.++.+|.+|+|||.+.
T Consensus        67 dwy~~~~i~L~~~~~v~~idr--~--~k--~V~t~~g~~~~YDkLilATGS~p  113 (793)
T COG1251          67 DWYEENGITLYTGEKVIQIDR--A--NK--VVTTDAGRTVSYDKLIIATGSYP  113 (793)
T ss_pred             hhHHHcCcEEEcCCeeEEecc--C--cc--eEEccCCcEeecceeEEecCccc
Confidence            345678999999999999988  5  22  56778899999999999999654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.96  E-value=0.01  Score=53.32  Aligned_cols=34  Identities=35%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3569999999999999999999999999999753

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.93  E-value=0.0093  Score=54.07  Aligned_cols=32  Identities=22%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||.|+.|+++|..|++.|++|+.+|.+.
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            49999999999999999999999999999764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.93  E-value=0.069  Score=53.74  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=29.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..+|+|||||..|+-+|..|.+.|. +|+|+.+..
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3579999999999999999999986 699998653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=95.86  E-value=0.096  Score=54.79  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+|+|||||.+|+-+|..+.+.|.+|+++.+.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr  479 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR  479 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence            57999999999999999999999999999864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=95.85  E-value=0.092  Score=54.59  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc-C-CcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR-G-QKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~-g-~~V~lvE~~~   40 (413)
                      .+|+|||||.+|+-+|..+.+. | .+|+|+.+..
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            5799999999999999998887 5 4899998754

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.81  E-value=0.013  Score=52.92  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            56999999999999999999999999999985

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.74  E-value=0.014  Score=56.66  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|.+|+.+|..|+++|++|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3479999999999999999999999999999754

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.63  E-value=0.015  Score=52.11  Aligned_cols=33  Identities=36%  Similarity=0.528  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            469999999999999999999999999999753

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.025  Score=50.70  Aligned_cols=43  Identities=26%  Similarity=0.458  Sum_probs=38.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ..|||+|+|.|+.=+..+..|+..|.+|+.||+++.-|...++
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~as   47 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSAS   47 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccc
Confidence            4799999999999999999999999999999999987654443

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.56  E-value=0.023  Score=51.52  Aligned_cols=40  Identities=18%  Similarity=0.336  Sum_probs=33.6

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      |+ |.+..+|+|||+|..|..+|+.|+..|+ +|+|+|..+.
T Consensus         1 ~~-~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          1 MT-MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CC-CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            44 3345789999999999999999999996 9999997654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.55  E-value=0.016  Score=55.88  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .|+|||.|.+|+++|+.|.++|++|+++|+....
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            4899999999999999999999999999987543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.54  E-value=0.015  Score=52.05  Aligned_cols=32  Identities=41%  Similarity=0.660  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|.|||+|..|...|..|+++|++|+++|.++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            59999999999999999999999999999864

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.51  E-value=0.02  Score=55.45  Aligned_cols=41  Identities=32%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      |.++..-..|.|||+|.+|...|..|++.|++|+++|+.+.
T Consensus         1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            43333345699999999999999999999999999998653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.42  E-value=0.021  Score=54.70  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            357999999999999999999999999999987654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.42  E-value=0.021  Score=52.62  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|.|||+|..|...|..|+++|++|+++++..
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            469999999999999999999999999999753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.40  E-value=0.022  Score=53.96  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=33.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ...++|||||+.|+-.|..+++.|.+|+|||+.+..
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i  208 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            357999999999999999999999999999998764

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.31  E-value=0.083  Score=51.00  Aligned_cols=35  Identities=29%  Similarity=0.482  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~  207 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA  207 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            57999999999999999999999999999986543

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.31  E-value=0.03  Score=46.96  Aligned_cols=36  Identities=33%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ....|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v   56 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV   56 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            35789999999999999999999998 6999998744

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.26  E-value=0.027  Score=51.15  Aligned_cols=33  Identities=30%  Similarity=0.642  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|.|||+|..|...|..|++.|++|+++|...
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999753

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.25  E-value=0.024  Score=51.30  Aligned_cols=30  Identities=30%  Similarity=0.509  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      +|+|||+|..|...|..|++.|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            499999999999999999999999999987

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.25  E-value=0.035  Score=44.58  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=30.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      ....|+|||||-.|..-|..|.+.|.+|+||..
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            356899999999999999999999999999954

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.24  E-value=0.024  Score=51.26  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +|+|||+|..|...|..|++.|++|+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4999999999999999999999999999974

>PRK07846 mycothione reductase; Reviewed

Probab=95.21  E-value=0.026  Score=54.08  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l  201 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL  201 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            358999999999999999999999999999987643

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.21  E-value=0.028  Score=50.58  Aligned_cols=33  Identities=42%  Similarity=0.402  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|..+
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            459999999999999999999999999999754

>PRK06370 mercuric reductase; Validated

Probab=95.21  E-value=0.093  Score=50.64  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  206 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL  206 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence            57999999999999999999999999999987653

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.19  E-value=0.023  Score=50.97  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|..+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            359999999999999999999999999999764

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.17  E-value=0.032  Score=51.04  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +.|.|||+|..|...|..|++.|++|+++++..
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999853

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.16  E-value=0.026  Score=54.47  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            358999999999999999999999999999987643

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.15  E-value=0.037  Score=46.52  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ....|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            3468999999999999999999999999999753

>TIGR02053 MerA mercuric reductase

Probab=95.13  E-value=0.029  Score=54.15  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||+|.+|+-+|..|++.|.+|+|+++.+..
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            58999999999999999999999999999987543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.10  E-value=0.03  Score=50.02  Aligned_cols=32  Identities=31%  Similarity=0.462  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||+|..|...|..|+++|++|+++|.++
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            59999999999999999999999999998753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.06  E-value=0.11  Score=50.12  Aligned_cols=36  Identities=33%  Similarity=0.441  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            357999999999999999999999999999987643

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.06  E-value=0.04  Score=46.40  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999999999999999999999999999864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.04  E-value=0.036  Score=53.27  Aligned_cols=34  Identities=38%  Similarity=0.525  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4679999999999999999999999999999864

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.03  E-value=0.038  Score=43.16  Aligned_cols=36  Identities=36%  Similarity=0.456  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~   42 (413)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            4679999999999999999999998 89999987543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.00  E-value=0.019  Score=48.90  Aligned_cols=32  Identities=47%  Similarity=0.629  Sum_probs=27.7

Q ss_pred             EEEECCCHHHHHHHHHHHHc--CCcEEEEcccCC
Q 015072           10 VIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDF   41 (413)
Q Consensus        10 vvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~   41 (413)
                      .+|||||++|.++|-.|+..  ..+|+|+.+...
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            68999999999999999986  678999977544

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.96  E-value=0.031  Score=52.78  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..|.|||.|..|+.+|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            4699999999999999999999999999997643

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.94  E-value=0.035  Score=53.57  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||||.+|+-+|..|++.|.+|+|+++.+..
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            57999999999999999999999999999987653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.91  E-value=0.033  Score=53.29  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l  183 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI  183 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            57999999999999999999999999999987543

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.90  E-value=0.037  Score=50.04  Aligned_cols=32  Identities=41%  Similarity=0.701  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~   40 (413)
                      +|.|||+|..|.++|+.|+++|  .+|+|+|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            4999999999999999999999  4899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.90  E-value=0.03  Score=46.49  Aligned_cols=38  Identities=34%  Similarity=0.379  Sum_probs=33.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +.+...|.|||+|..|.-+|...+..|+.|.|+|++..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            34557899999999999999999999999999998643

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=94.86  E-value=0.23  Score=51.90  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~-g~-~V~lvE~~~   40 (413)
                      ..+|+|||||.+|+-+|..+.+. |. +|+||++..
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            35799999999999999998886 75 899998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.85  E-value=0.039  Score=49.75  Aligned_cols=32  Identities=31%  Similarity=0.628  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      ++|.|||+|..|..+|+.|+.+|+ +|+++|..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~   34 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV   34 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            469999999999999999999887 89999974

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.68  E-value=0.066  Score=41.79  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~~   39 (413)
                      +...++|||+|-+|..+++.|.+.|.+ |+|+.|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            457899999999999999999999986 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR03452 mycothione_red mycothione reductase

Probab=94.68  E-value=0.044  Score=52.58  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||||..|+-+|..|++.|.+|+||++.+.
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  203 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK  203 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            5799999999999999999999999999998654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.62  E-value=0.026  Score=41.68  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +...|+|||||-.|..-+..|.+.|.+|+|+.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            3568999999999999999999999999999876

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.61  E-value=0.059  Score=43.68  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             CCccEEEECCCH-HHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...+++|||+|- +|..+|..|.++|.+|+++.+.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            457899999996 6999999999999999999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.53  E-value=0.05  Score=52.76  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|+.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            369999999999999999999999999999864

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.52  E-value=0.061  Score=48.71  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++|.|||+|..|...|..|++.|++|+++++..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3569999999999999999999999999999853

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.50  E-value=0.071  Score=41.96  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|+|||+ |-.|.++|+.|...+.  ++.|+|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            5999999 9999999999999865  799999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=94.49  E-value=0.36  Score=51.09  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=27.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCc-EEEEcc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQ   38 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~   38 (413)
                      ..+|+|||||.+|+-+|..+.+.|.+ |+++.+
T Consensus       571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~r  603 (1006)
T PRK12775        571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYR  603 (1006)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEee
Confidence            35899999999999999999999874 777764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.47  E-value=0.042  Score=52.03  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +|.|||.|..|+.+|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            499999999999999999999999999998653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK04148 hypothetical protein; Provisional

Probab=94.44  E-value=0.041  Score=42.35  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..++++||.| .|...|..|++.|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            3579999999 999999999999999999998653

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.41  E-value=0.57  Score=42.99  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=32.8

Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeC---Cc--cEEEeCeEEEcCCcC
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SG--EEFWGKKCVVTAGAW  212 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~vV~A~G~~  212 (413)
                      ..+.++..++|.+++.  .++ +.+.+.+.   .|  ++++.|.||+|||..
T Consensus       291 ~~v~l~~~~ev~~~~~--~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         291 PDVRLLSLSEVQSVEP--AGD-GRYRLTLRHHETGELETVETDAVILATGYR  339 (436)
T ss_pred             CCeeeccccceeeeec--CCC-ceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence            4588899999999998  743 32555432   23  378999999999986

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.40  E-value=0.055  Score=49.48  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||+|..|...|..|++.|++|+++++..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            49999999999999999999999999998853

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=94.36  E-value=0.061  Score=49.04  Aligned_cols=63  Identities=24%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .-+-|.-+.++-.+..++.||.++-+..|.++.+  .  .+.+.++.+||.+++.|.||+|+|.--+
T Consensus       388 ~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~--~--~~nl~lkL~dG~~l~tD~vVvavG~ePN  450 (659)
T KOG1346|consen  388 EKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRK--C--CKNLVLKLSDGSELRTDLVVVAVGEEPN  450 (659)
T ss_pred             hhhhHHHHHHHHHHHHHhcCceeccchhhhhhhh--h--ccceEEEecCCCeeeeeeEEEEecCCCc
Confidence            3445677777777888889999999999999988  6  5677888999999999999999997544

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=94.36  E-value=0.22  Score=47.01  Aligned_cols=45  Identities=24%  Similarity=0.254  Sum_probs=34.8

Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~  215 (413)
                      .+.++.++.++.|+++..  .  ..  .+.+.+| ++.+|++|+|+|++...
T Consensus        64 ~~~~i~~~~~~~v~~id~--~--~~--~v~~~~g-~~~yd~LvlatGa~~~~  108 (415)
T COG0446          64 RATGIDVRTGTEVTSIDP--E--NK--VVLLDDG-EIEYDYLVLATGARPRP  108 (415)
T ss_pred             HhhCCEEeeCCEEEEecC--C--CC--EEEECCC-cccccEEEEcCCCcccC
Confidence            346789999999999987  5  23  3555666 59999999999987653

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=94.36  E-value=0.18  Score=49.23  Aligned_cols=33  Identities=30%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..+|+|||+|.+|+=+|.+|++...+|.+.-|.
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~  215 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRR  215 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence            468999999999999999999998899998765

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.35  E-value=0.067  Score=40.44  Aligned_cols=31  Identities=26%  Similarity=0.500  Sum_probs=27.9

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072           10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |+|+|.|-.|..++..|.+.+.+|+++|+++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            6899999999999999999777999999875

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.35  E-value=0.07  Score=43.46  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=29.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4689999999999999999999999999999753

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.24  E-value=0.052  Score=48.40  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||.|..|.+.|..|+++|++|+++++.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            49999999999999999999999999999753

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.20  E-value=0.083  Score=46.28  Aligned_cols=37  Identities=35%  Similarity=0.411  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~   42 (413)
                      ....|+|||.|-.|..+|..|++.| .+++|+|.+...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence            3578999999999999999999999 599999987543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.15  E-value=0.058  Score=52.17  Aligned_cols=33  Identities=36%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|.+|...|..|++.|++|+++|+.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            459999999999999999999999999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.14  E-value=0.36  Score=48.65  Aligned_cols=32  Identities=13%  Similarity=0.027  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      .+|+|||+|..|+-+|..+.+.|. +|+++.+.
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr  484 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRR  484 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence            579999999999999999888885 79999875

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.13  E-value=0.064  Score=49.02  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||+|..|...|..|++.|++|+++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            59999999999999999999999999999853

>PRK13984 putative oxidoreductase; Provisional

Probab=94.13  E-value=0.55  Score=47.04  Aligned_cols=30  Identities=17%  Similarity=0.295  Sum_probs=25.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC------cEEEEc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ------KTLLLE   37 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~------~V~lvE   37 (413)
                      .+|+|||||.+|+-+|..|++.+.      +|+++.
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            589999999999999999998753      566653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.10  E-value=0.07  Score=43.23  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|.|||-|..|...|..|.++|++|.++|+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            469999999999999999999999999999763

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.06  E-value=0.084  Score=48.27  Aligned_cols=36  Identities=25%  Similarity=0.471  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      .+..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V   59 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV   59 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            35789999999999999999999998 9999998654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.06  E-value=0.093  Score=44.49  Aligned_cols=36  Identities=31%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ....|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   63 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV   63 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence            35789999999999999999999998 6999998754

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.99  E-value=0.088  Score=48.12  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ....|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v   59 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV   59 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            35689999999999999999999998 8999998754

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.81  Score=41.19  Aligned_cols=35  Identities=31%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|+|||||-+.+--|+.|++.+.+|+|+=+.+.
T Consensus       143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~  177 (305)
T COG0492         143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE  177 (305)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc
Confidence            35999999999999999999999999999977543

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.92  E-value=0.18  Score=46.83  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-------------CcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG-------------QKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g-------------~~V~lvE~~~~~   42 (413)
                      .+++|||||.+|.-+|-+|+++-             .+|+|||+.+..
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            47999999999999999998741             389999998764

>PRK06116 glutathione reductase; Validated

Probab=93.91  E-value=0.076  Score=51.03  Aligned_cols=34  Identities=35%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  201 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            5799999999999999999999999999998754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.89  E-value=0.086  Score=48.57  Aligned_cols=33  Identities=30%  Similarity=0.546  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~   40 (413)
                      .+|+|||+|-.|..+|..|+++| .+|++.+|..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            46999999999999999999998 8999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=93.88  E-value=0.081  Score=51.46  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            47999999999999999999999999999864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.87  E-value=0.13  Score=43.13  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...++|+|.|-.|..+|..|.+.|.+|+++|..
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999999999999999999999998864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.87  E-value=0.085  Score=50.53  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~  192 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASL  192 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4799999999999999999999999999998654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.81  E-value=0.072  Score=49.75  Aligned_cols=32  Identities=19%  Similarity=0.402  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +|.|||.|..|+.+|..|+. |++|+++|.+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            49999999999999988885 999999998653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.81  E-value=0.07  Score=52.67  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+|+|||||.+|+-+|..|++.|.+|+|+++.+.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            5799999999999999999999999999998653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.75  E-value=0.11  Score=42.47  Aligned_cols=33  Identities=33%  Similarity=0.356  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      +|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   34 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV   34 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            48999999999999999999998 6999998754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14694 putative mercuric reductase; Provisional

Probab=93.73  E-value=0.093  Score=50.70  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+++|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            57999999999999999999999999999874

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.73  E-value=0.095  Score=44.83  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=28.1

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            9 DVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +|.||| +|..|.++|..|++.|++|++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~   33 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD   33 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            499997 7999999999999999999999764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.71  E-value=0.083  Score=50.59  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~   40 (413)
                      ++|+|||.|..|+.+|..|+++|  ++|+.+|.+.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            35999999999999999999984  7899999764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=93.70  E-value=0.086  Score=51.04  Aligned_cols=32  Identities=25%  Similarity=0.196  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            47999999999999999999999999999864

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.69  E-value=0.12  Score=43.42  Aligned_cols=36  Identities=33%  Similarity=0.487  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      .+..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence            45789999999999999999999997 8999998754

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14727 putative mercuric reductase; Provisional

Probab=93.67  E-value=0.087  Score=51.04  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            57999999999999999999999999999874

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.67  E-value=0.13  Score=40.66  Aligned_cols=34  Identities=35%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~   42 (413)
                      .|+|||.|-.|..+|..|++.|. +++|+|.+...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~   35 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE   35 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence            48999999999999999999998 79999987543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.65  E-value=0.1  Score=47.21  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      .+|+|||+|..|..+|+.|+..|+ +|.|+|...
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            479999999999999999999876 999999853

>PRK13748 putative mercuric reductase; Provisional

Probab=93.61  E-value=0.088  Score=52.20  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            57999999999999999999999999999975

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=93.61  E-value=0.065  Score=50.68  Aligned_cols=36  Identities=39%  Similarity=0.497  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+|.+|||+|-+|+.+|..|++.|.++.++-+....
T Consensus        55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~   90 (642)
T KOG2403|consen   55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPT   90 (642)
T ss_pred             eceeEEEeccchhhhhhhhhhhcCceEEEEeccccc
Confidence            489999999999999999999999999999876543

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.60  E-value=0.088  Score=47.45  Aligned_cols=32  Identities=34%  Similarity=0.567  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|+|+|+|..|...|+.|++.|..|+++-+.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            49999999999999999999998888887765

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.58  E-value=0.14  Score=46.44  Aligned_cols=34  Identities=32%  Similarity=0.583  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      ..+|.|||+|-.|.++|+.|+..|.  ++.|+|...
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4689999999999999999999987  799999754

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=93.58  E-value=0.42  Score=49.48  Aligned_cols=31  Identities=16%  Similarity=0.266  Sum_probs=24.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---cCCcEEEEcc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAK---RGQKTLLLEQ   38 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~---~g~~V~lvE~   38 (413)
                      ..|+|||||.+|+-+|..+..   .+.++++++.
T Consensus       551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~  584 (1028)
T PRK06567        551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDY  584 (1028)
T ss_pred             CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhh
Confidence            579999999999999987655   2566777665

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.55  E-value=0.1  Score=48.42  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..+|+|||+|.+|..+|..|.+.|.+|+++|+.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            467999999999999999999999999999975

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.54  E-value=0.078  Score=53.84  Aligned_cols=33  Identities=36%  Similarity=0.558  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|.+|..+|..++..|++|+|+|..+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.45  E-value=0.13  Score=44.52  Aligned_cols=37  Identities=30%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~   42 (413)
                      ...+|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            35789999999999999999999996 89999987543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.40  E-value=0.07  Score=46.76  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .-+|+|||||++|.-+|.-+.-.|.+|+++|.+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n  200 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN  200 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence            468999999999999999999999999999986

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=93.39  E-value=0.086  Score=53.44  Aligned_cols=33  Identities=36%  Similarity=0.557  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|.+|..+|..++.+|++|+|+|...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.36  E-value=0.11  Score=46.37  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||||.+|...|..++..|++|+++|..+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~   36 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP   36 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence            469999999999999999999789999999863

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.25  E-value=0.15  Score=44.45  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      .+.+|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            35789999999999999999999997 8999998744

>PRK08328 hypothetical protein; Provisional

Probab=93.25  E-value=0.16  Score=43.77  Aligned_cols=35  Identities=40%  Similarity=0.564  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            5689999999999999999999997 8999987654

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.17  E-value=0.16  Score=45.99  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=30.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +.+|.|||+|-.|.++|+.|+..|.  ++.|+|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4689999999999999999999876  799999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=93.11  E-value=0.11  Score=46.73  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=28.1

Q ss_pred             EEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072           10 VIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus        10 vvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      |.|||+|..|..+|+.|+.+|+ +|+|+|.++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999877 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.09  E-value=0.15  Score=43.73  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCc---EEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQK---TLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~---V~lvE~~~   40 (413)
                      ....++|+|+|-+|..+|..|.+.|.+   |.|+|+..
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            346899999999999999999999974   99999863

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.09  E-value=0.16  Score=43.66  Aligned_cols=36  Identities=44%  Similarity=0.455  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      .+..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v   56 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV   56 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            35789999999999999999999997 8999998754

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02852 ferredoxin-NADP+ reductase

Probab=93.02  E-value=1.6  Score=42.24  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=21.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQK   32 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~   32 (413)
                      .+|+|||+|..|+-+|..|.+.+.+
T Consensus       167 k~VvVIGgGnvAlD~Ar~L~~~~~~  191 (491)
T PLN02852        167 DTAVVLGQGNVALDCARILLRPTDE  191 (491)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCccc
Confidence            5799999999999999999987433

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=93.00  E-value=0.11  Score=52.89  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|.+|..+|..++..|++|+|+|..+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            469999999999999999999999999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PTZ00117 malate dehydrogenase; Provisional

Probab=92.94  E-value=0.16  Score=46.08  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~   40 (413)
                      ..+|+|||+|..|.++|+.|+..| .++.|+|...
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            468999999999999999999988 5899999764

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.85  E-value=0.15  Score=49.15  Aligned_cols=34  Identities=21%  Similarity=0.058  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|+|.|.+|.++|..|.++|.+|++.|.+.
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            3579999999999999999999999999999654

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.82  E-value=0.18  Score=46.37  Aligned_cols=38  Identities=32%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      |.....+++|.|||+|..|.++|..|++.| .|+++.+.
T Consensus         1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~   38 (341)
T PRK12439          1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRS   38 (341)
T ss_pred             CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence            433445578999999999999999999998 67776543

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.81  E-value=0.17  Score=48.66  Aligned_cols=33  Identities=27%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..++|+|+|-+|+++|..|+++|.+|++.|+..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            469999999999999999999999999999754

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.80  E-value=0.3  Score=34.62  Aligned_cols=33  Identities=36%  Similarity=0.572  Sum_probs=29.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQ   38 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~   38 (413)
                      ...+++|+|.|.+|..+|..|.+. +.+|.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            346799999999999999999998 678999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.72  E-value=0.14  Score=48.17  Aligned_cols=36  Identities=28%  Similarity=0.265  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ...|+|+|-|.+|+++|..|.++|.+|++.|..+..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            578999999999999999999999999999976543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.70  E-value=0.14  Score=45.99  Aligned_cols=32  Identities=34%  Similarity=0.390  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||.|..|...|..|++.|++|+++++.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            38999999999999999999999999998764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.68  E-value=0.13  Score=39.98  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=27.6

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072           10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus        10 vvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ++|+|+|..+..+|..++..|++|+|+|..+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999997643

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=92.67  E-value=0.2  Score=44.36  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ...|+|||.|..|-+.|+.|.++|+.|.+++++...
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~   38 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA   38 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH
Confidence            356999999999999999999999999999887543

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.64  E-value=0.2  Score=48.10  Aligned_cols=34  Identities=24%  Similarity=0.183  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..++|+|.|-+|+++|..|+++|++|++.|..+.
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5799999999999999999999999999997543

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=92.59  E-value=0.17  Score=45.72  Aligned_cols=33  Identities=36%  Similarity=0.669  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~   41 (413)
                      +|+|||+|-+|.++|+.|+.+|  .+|+|+|+...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            5899999999999999999998  48999998643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.52  E-value=0.16  Score=48.91  Aligned_cols=34  Identities=26%  Similarity=0.141  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHH-HHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSS-AAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~-~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||.|-+|++ +|..|.++|++|++.|...
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~   41 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE   41 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence            356999999999999 6999999999999999754

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.45  E-value=0.2  Score=45.70  Aligned_cols=44  Identities=30%  Similarity=0.453  Sum_probs=38.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ..++||||||.|+.=..+|...++.|.+|+=+|++..-|+.-+|
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waS   49 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWAS   49 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccc
Confidence            45799999999999999999999999999999999887665443

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.30  E-value=0.23  Score=46.30  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=32.6

Q ss_pred             CCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            4 SGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         4 ~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +...++|+|.|| |..|..++..|.++|++|+.+++..
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            345678999999 9999999999999999999998753

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=92.29  E-value=0.23  Score=44.28  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      .+|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            579999999999999999999997 79999885

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=92.26  E-value=0.24  Score=42.70  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC-----------CcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG-----------QKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g-----------~~V~lvE~~~~   41 (413)
                      +..+|+|||+|-.|..++..|++.|           .+++|+|.+..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            4678999999999999999999964           38999998754

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.25  E-value=0.21  Score=48.60  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            469999999999999999999999999999653

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.25  E-value=0.2  Score=45.40  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      .+|+|||.|..|.+.|..|.+.|.  +|+++++.+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            579999999999999999999885  899998753

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.24  E-value=0.26  Score=42.34  Aligned_cols=35  Identities=43%  Similarity=0.401  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      +..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V   46 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV   46 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            5789999999999999999999997 9999998754

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.22  E-value=0.25  Score=41.40  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=31.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      +..|+|||.|-.|+.+|..|++.|. +++|+|.+..
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v   56 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV   56 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence            5789999999999999999999998 7999998754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.20  E-value=0.21  Score=48.09  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|+|+|.|.+|+++|..|.++|++|++.|..+
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            479999999999999999999999999999764

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.18  E-value=0.22  Score=46.40  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             CccEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...|+||| .|..|.+.|..|.++|+.|+++++.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            46799999 8999999999999999999999974

>PRK08223 hypothetical protein; Validated

Probab=92.17  E-value=0.26  Score=43.54  Aligned_cols=37  Identities=27%  Similarity=0.263  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~   42 (413)
                      .+..|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve   63 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFE   63 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence            35789999999999999999999997 89999987543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.15  E-value=0.25  Score=41.47  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      .+..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v   54 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV   54 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence            35789999999999999999999997 6999998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.13  E-value=0.2  Score=46.88  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|+|.|..|+.+|..|...|.+|+++|..+
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3579999999999999999999999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=92.08  E-value=0.2  Score=48.21  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..+|+|||||.+|+-+|..|.+.|. +|+++++..
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            3589999999999999999999998 899998753

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.08  E-value=0.16  Score=51.64  Aligned_cols=33  Identities=33%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~-~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|.+|...|..++ ..|++|+++|..+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999998 7899999999754

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=92.06  E-value=0.17  Score=51.30  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~-~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|...|..++ +.|++|+|+|..+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999998 5899999999764

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=92.00  E-value=0.25  Score=35.82  Aligned_cols=32  Identities=28%  Similarity=0.496  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC---CcEEEE-cccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG---QKTLLL-EQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g---~~V~lv-E~~~   40 (413)
                      +|.|||+|-.|.+++..|.+.|   .+|.++ ++.+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence            3789999999999999999999   899977 6653

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=91.93  E-value=0.25  Score=44.48  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|.|||+|-.|.++|+.|..++.  ++.|+|...
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   34 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            48999999999999999999876  799999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.86  E-value=0.3  Score=42.11  Aligned_cols=40  Identities=33%  Similarity=0.380  Sum_probs=32.0

Q ss_pred             CCCCCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            1 MEFSGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 M~~~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |.+..+...++|+|| |..|..+|.+|+++|++|++++++.
T Consensus         1 ~~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~   41 (239)
T PRK12828          1 MEHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA   41 (239)
T ss_pred             CCCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence            433333456999987 8899999999999999999998853

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.85  E-value=0.2  Score=48.22  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|.+|+.++..+...|.+|.++|..+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999764

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=91.84  E-value=0.18  Score=48.34  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+|.|||.|..|...|..|+++|++|+++++...
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998653

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.82  E-value=0.28  Score=43.48  Aligned_cols=39  Identities=23%  Similarity=0.135  Sum_probs=32.1

Q ss_pred             CCCCCCCccEEEECCC---HHHHHHHHHHHHcCCcEEEEccc
Q 015072            1 MEFSGENFDVIVVGAG---IMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG---~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      |+.+.+..-++|.||+   =.|..+|..|++.|.+|++++++
T Consensus         1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence            5555555678999987   58999999999999999998764

>PLN02602 lactate dehydrogenase

Probab=91.80  E-value=0.31  Score=44.72  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      .+|+|||+|-.|.++|+.|...+.  ++.|+|...
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            689999999999999999998876  799999754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.78  E-value=0.25  Score=44.11  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...++|||.|-+|..+|..|+..|.+|+++++..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4679999999999999999999999999998854

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	413
1zov_A	386	Crystal Structure Of Monomeric Sarcosine Oxidase Fr		3e-43
1el5_A	389	Complex Of Monomeric Sarcosine Oxidase With The Inh		3e-42
3m0o_A	389	Crystal Structure Of The Lys265met Mutant Of Monome		5e-42
3m12_A	389	Crystal Structure Of The Lys265arg Phosphate-Crytsa		5e-42
3bhf_A	390	Crystal Structure Of R49k Mutant Of Monomeric Sarco		7e-42
1l9c_A	389	Role Of Histidine 269 In Catalysis By Monomeric Sar		2e-41
1el9_A	389	Complex Of Monomeric Sarcosine Oxidase With The Inh		9e-37
2uzz_A	372	X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (M		1e-31
2oln_A	397	Nikd, An Unusual Amino Acid Oxidase Essential For N		3e-09
3hzl_A	397	Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxi		3e-09
2q6u_A	384	Semet-Substituted Form Of Nikd Length = 384		2e-08
1y56_B	382	Crystal Structure Of L-Proline Dehydrogenase From P		3e-07
3atq_A	453	Geranylgeranyl Reductase (Ggr) From Sulfolobus Acid		6e-04

>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From Bacillus Sp. Ns- 129 Length = 386

Iteration: 1
 Score =  172 bits (437), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 193/380 (50%), Gaps = 22/380 (5%)
Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG MG +A Y LAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y 
Sbjct: 3   HFDVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHHGDTRIIRHAYGEGREYV 62
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRS-VIASCRKNSVPHQVLDCRQ 124
           P  L +  LW + + E  +K++ +      GP    +  S  + +   +S+ H++ + +Q
Sbjct: 63  PFALRAQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELFEGKQ 122
Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXX 184
           +  +++G +E+P+N+  +     GV+     +  ++ LA  +GA +   T V+       
Sbjct: 123 LTDRWAG-VEVPDNYEAIFEPNSGVLFSENCIQAYRELAEAHGATVLTYTPVEDFEVTED 181
Query: 185 XXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
                          +   K VV+ GAW  KL+ K+  +E+P+Q     V ++   E DE
Sbjct: 182 LVTIKTAKGS-----YTANKLVVSMGAWNSKLLSKLD-VEIPLQPYRQVVGFF---ECDE 232
Query: 245 ADYAVGGDFPSFASYGDPHV-YGTPSLEYPGLIKIALHR-GYLCDPD--RRPWGPGPLLD 300
           A Y+    +P+F    +  + YG PS    GL KI  H  G   DPD   R +G  P  +
Sbjct: 233 AKYSNNAHYPAFMVEVENGIYYGFPSFGGSGL-KIGYHSYGQQIDPDTINREFGAYPEDE 291
Query: 301 S-LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           + L++ ++    G        A  +CMY+ TPD+ FVID        +V +A GFSGHGF
Sbjct: 292 ANLRKFLEQYMPGANGELKKGA--VCMYTKTPDEHFVIDLHPKY--SNVAIAAGFSGHGF 347
Query: 360 KMAPVVGRILADLVLSGEAQ 379
           K + VVG  LA L  +G+ +
Sbjct: 348 KFSSVVGETLAQLATTGKTE 367

>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor Dimethylglycine Length = 389

Iteration: 1
 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 200/391 (51%), Gaps = 23/391 (5%)
Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y 
Sbjct: 3   HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYV 62
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+ L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  +
Sbjct: 63  PLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDE 122
Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXX 184
           + +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +T V+       
Sbjct: 123 INKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDF----- 176
Query: 185 XXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
                          +   K +V+ GAW  KL+ K++ L++P+Q     V ++   E DE
Sbjct: 177 DISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDE 232
Query: 245 ADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHR-GYLCDPD--RRPWGPGPLLD 300
           + Y+   DFP F     +   YG PS    GL K+  H  G   DPD   R +G  P  +
Sbjct: 233 SKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDE 291
Query: 301 S-LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           S L+  ++    G        A  +CMY+ T D+ F+ID        +VV+A GFSGHGF
Sbjct: 292 SNLRAFLEEYMPGANGELKRGA--VCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGF 347
Query: 360 KMAPVVGRILADLVLSGEAQGVELRHFRIAR 390
           K +  VG +L+ L L+G+ +  ++  F I R
Sbjct: 348 KFSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric Sarcosine Oxidase Length = 389

Iteration: 1
 Score =  168 bits (426), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 198/390 (50%), Gaps = 21/390 (5%)
Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y 
Sbjct: 3   HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYV 62
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+ L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  +
Sbjct: 63  PLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDE 122
Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXX 184
           + +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +T V+       
Sbjct: 123 INKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDF----- 176
Query: 185 XXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
                          +   K +V+ GAW  KL+ K++ L++P+Q     V ++   E DE
Sbjct: 177 DISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDE 232
Query: 245 ADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPD--RRPWGPGPLLDS 301
           + Y+   DFP F     +   YG PS    GL+      G   DPD   R +G  P  +S
Sbjct: 233 SKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLMLGYHTFGQKIDPDTINREFGVYPEDES 292
Query: 302 -LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360
            L+  ++    G        A  +CMY+ T D+ F+ID        +VV+A GFSGHGFK
Sbjct: 293 NLRAFLEEYMPGANGELKRGA--VCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGFK 348
Query: 361 MAPVVGRILADLVLSGEAQGVELRHFRIAR 390
            +  VG +L+ L L+G+ +  ++  F I R
Sbjct: 349 FSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase Length = 389

Iteration: 1
 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 200/391 (51%), Gaps = 23/391 (5%)
Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y 
Sbjct: 3   HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYV 62
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+ L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  +
Sbjct: 63  PLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDE 122
Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXX 184
           + +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +T V+       
Sbjct: 123 INKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDF----- 176
Query: 185 XXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
                          +   K +V+ GAW  KL+ K++ L++P+Q     V ++   E DE
Sbjct: 177 DISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDE 232
Query: 245 ADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHR-GYLCDPD--RRPWGPGPLLD 300
           + Y+   DFP F     +   YG PS    GL ++  H  G   DPD   R +G  P  +
Sbjct: 233 SKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-RLGYHTFGQKIDPDTINREFGVYPEDE 291
Query: 301 S-LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           S L+  ++    G        A  +CMY+ T D+ F+ID        +VV+A GFSGHGF
Sbjct: 292 SNLRAFLEEYMPGANGELKRGA--VCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGF 347
Query: 360 KMAPVVGRILADLVLSGEAQGVELRHFRIAR 390
           K +  VG +L+ L L+G+ +  ++  F I R
Sbjct: 348 KFSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine Oxidase Crystallized In Peg As Precipitant Length = 390

Iteration: 1
 Score =  167 bits (424), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 127/391 (32%), Positives = 200/391 (51%), Gaps = 23/391 (5%)
Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG+++ IR  Y E   Y 
Sbjct: 4   HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTKIIRHAYGEGREYV 63
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+ L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  +
Sbjct: 64  PLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDE 123
Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXX 184
           + +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +T V+       
Sbjct: 124 INKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDF----- 177
Query: 185 XXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
                          +   K +V+ GAW  KL+ K++ L++P+Q     V ++   E DE
Sbjct: 178 DISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDE 233
Query: 245 ADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHR-GYLCDPD--RRPWGPGPLLD 300
           + Y+   DFP F     +   YG PS    GL K+  H  G   DPD   R +G  P  +
Sbjct: 234 SKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDE 292
Query: 301 S-LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           S L+  ++    G        A  +CMY+ T D+ F+ID        +VV+A GFSGHGF
Sbjct: 293 SNLRAFLEEYMPGANGELKRGA--VCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGF 348
Query: 360 KMAPVVGRILADLVLSGEAQGVELRHFRIAR 390
           K +  VG +L+ L L+G+ +  ++  F I R
Sbjct: 349 KFSSGVGEVLSQLALTGKTEH-DISIFSINR 378

>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine Oxidase Length = 389

Iteration: 1
 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 197/390 (50%), Gaps = 21/390 (5%)
Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y 
Sbjct: 3   HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYV 62
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+ L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  +
Sbjct: 63  PLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDE 122
Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXX 184
           + +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +T V+       
Sbjct: 123 INKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDF----- 176
Query: 185 XXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
                          +   K +V+ GAW  KL+ K++ L++P+Q     V ++   E DE
Sbjct: 177 DISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDE 232
Query: 245 ADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPD--RRPWGPGPLLDS 301
           + Y+   DFP F     +   YG PS    GL       G   DPD   R +G  P  +S
Sbjct: 233 SKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYNTFGQKIDPDTINREFGVYPEDES 292
Query: 302 -LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFK 360
            L+  ++    G        A  +CMY+ T D+ F+ID        +VV+A GFSGHGFK
Sbjct: 293 NLRAFLEEYMPGANGELKRGA--VCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGFK 348
Query: 361 MAPVVGRILADLVLSGEAQGVELRHFRIAR 390
            +  VG +L+ L L+G+ +  ++  F I R
Sbjct: 349 FSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor [methylthio]acetate Length = 389

Iteration: 1
 Score =  150 bits (380), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 197/391 (50%), Gaps = 23/391 (5%)
Query: 7   NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YH 65
           +FDVIVVGAG  G +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y 
Sbjct: 3   HFDVIVVGAGSXGXAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYV 62
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+ L S  LW + + E  +K++ K      GP  E+  +     + +++S+   +L+  +
Sbjct: 63  PLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETXEAAKEHSLTVDLLEGDE 122
Query: 125 VLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXX 184
           + +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +T V+       
Sbjct: 123 INKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDF----- 176
Query: 185 XXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE 244
                          +   K +V+ GAW  KL+ K++ L++P+Q     V ++   E DE
Sbjct: 177 DISPDSVKIETANGSYTADKLIVSXGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDE 232
Query: 245 ADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHR-GYLCDPD--RRPWGPGPLLD 300
           + Y+   DFP F     +   YG PS    GL K+  H  G   DPD   R +G  P  +
Sbjct: 233 SKYSNDIDFPGFXVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDE 291
Query: 301 S-LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
           S L+  ++    G        A  +C Y+ T D+ F+ID        +VV+A GFSGHGF
Sbjct: 292 SNLRAFLEEYXPGANGELKRGA--VCXYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGF 347
Query: 360 KMAPVVGRILADLVLSGEAQGVELRHFRIAR 390
           K +  VG +L+ L L+G+ +  ++  F I R
Sbjct: 348 KFSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox) Length = 372

Iteration: 1
 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 187/405 (46%), Gaps = 55/405 (13%)
Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHP 66
           +D+I++G+G +G++A Y   + G   L+ +     H  GS HG++R IR  Y E + Y P
Sbjct: 3   YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVP 62
Query: 67  MVLESSLLWEQ-AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
           +VL + +LW++ ++      ++ ++   ++GP+++  L +V  S  +  +  + LD + +
Sbjct: 63  LVLRAQMLWDELSRHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGI 122
Query: 126 LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXX 185
           + ++   I +P+N++G+     G ++   A+  +  LA + G     N  V  +      
Sbjct: 123 MARWP-EIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG 181
Query: 186 XXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEA 245
                        E+  KK +V AG WV  L+      ELP+Q V     +++     + 
Sbjct: 182 VTIETADG-----EYQAKKAIVCAGTWVKDLLP-----ELPVQPVRKVFAWYQA----DG 227
Query: 246 DYAVGGDFPSFAS---YGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSL 302
            Y+V   FP+F      GD + YG P+      +KI  H G            G ++ S 
Sbjct: 228 RYSVKNKFPAFTGELPNGDQY-YGFPAEN--DALKIGKHNG------------GQVIHSA 272
Query: 303 KELIQGRFAGRVDSSGPAATQL---------------CMYSMTPDKDFVIDFLGGELGED 347
            E +   FA  V     A   L               C Y  +PD+DF+ID L G   ++
Sbjct: 273 DERVP--FAEVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGH--DN 328
Query: 348 VVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFK 392
            ++  G SGHGFK A V+G I AD     ++   +L  FR++RF+
Sbjct: 329 TLLITGLSGHGFKFASVLGEIAADFAQDKKSD-FDLTPFRLSRFQ 372

>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Closed Form At 1.15 A Resolution Length = 397

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 158/393 (40%), Gaps = 47/393 (11%)
Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E++DV+VVG G +G + A+Q+A+RG + L+LE+  F +  G + G  R  R  Y ++   
Sbjct: 3   ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 62
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSE----NKSLRSVIASCRKNSVPHQVLD 121
            + LE+  LW   +S    ++  +      G ++       +    A   K SV ++ L 
Sbjct: 63  RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLK 122
Query: 122 CRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLX 181
              + +++  R  +P ++ G     GG I     ++   TLA   GA LR    V  ++ 
Sbjct: 123 ATDIERRFGFR-GLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVP 181
Query: 182 XXXXXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWR-IK 240
                             +   K V+  G +   L++ + G  L     E ++  +R   
Sbjct: 182 DADGVSVTTDRGT-----YRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT 235
Query: 241 EGDEADYAVGGDFPS------FASYG-DPHVYGT-----PSLEYPGLIKIALHRGYLCDP 288
              EA +      P+      F  +G +P   G      P  E   L   +   G     
Sbjct: 236 PVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGV---A 292
Query: 289 DRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSM--TPDKDFVIDFLGGEL-- 344
           DRR       +D L   ++      VD   P  T  C+  +   P++ F   FLG     
Sbjct: 293 DRRQ------MDRLSGWLRDHLP-TVDPD-PVRTSTCLAVLPTDPERQF---FLGTARDL 341
Query: 345 ---GEDVVVAGGFSGHGFKMAPVVGRILADLVL 374
              GE +VV G  +G  FK  P+ GRI ADL +
Sbjct: 342 MTHGEKLVVYG--AGWAFKFVPLFGRICADLAV 372

>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Open Form At 1.55a Resolution Length = 397

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 158/393 (40%), Gaps = 47/393 (11%)
Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E++DV+VVG G +G + A+Q+A+RG + L+LE+  F +  G + G  R  R  Y ++   
Sbjct: 3   ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 62
Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSE----NKSLRSVIASCRKNSVPHQVLD 121
            + LE+  LW   +S    ++  +      G ++       +    A   K SV ++ L 
Sbjct: 63  RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLK 122
Query: 122 CRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLX 181
              + +++  R  +P ++ G     GG I     ++   TLA   GA LR    V  ++ 
Sbjct: 123 ATDIERRFGFR-GLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVP 181
Query: 182 XXXXXXXXXXXXXXXGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWR-IK 240
                             +   K V+  G +   L++ + G  L     E ++  +R   
Sbjct: 182 DADGVSVTTDRGT-----YRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT 235
Query: 241 EGDEADYAVGGDFPS------FASYG-DPHVYGT-----PSLEYPGLIKIALHRGYLCDP 288
              EA +      P+      F  +G +P   G      P  E   L   +   G     
Sbjct: 236 PVTEAPFWFAFQQPTPQDTNLFFGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGV---A 292
Query: 289 DRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSM--TPDKDFVIDFLGGEL-- 344
           DRR       +D L   ++      VD   P  T  C+  +   P++ F   FLG     
Sbjct: 293 DRRQ------MDRLSGWLRDHLP-TVDPD-PVRTSTCLAVLPTDPERQF---FLGTARDL 341
Query: 345 ---GEDVVVAGGFSGHGFKMAPVVGRILADLVL 374
              GE +VV G  +G  FK  P+ GRI ADL +
Sbjct: 342 MTHGEKLVVYG--AGWAFKFVPLFGRICADLAV 372

>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From P.Horikoshii Length = 382

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 148/368 (40%), Gaps = 41/368 (11%)
Query: 23  AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEI 82
           A++LAKRG++  ++E+  F+   GS+      IR  + ++    ++  S  LW++   E 
Sbjct: 21  AHELAKRGEEVTVIEK-RFIGS-GSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEY 78
Query: 83  GYKVYFKAHQFDMGPSEN-KSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVG 141
           G+      + F +   E  K+ +  I    K  VP +++   +  ++    ++I E    
Sbjct: 79  GFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEA-KEIVPLLDISEVIAA 137
Query: 142 VTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLXXXXXXXXXXXXXXXXGEEFW 201
                 G   P +A + F   A + GA L + TEVK  L                     
Sbjct: 138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGI- 196
Query: 202 GKKCVVTAGAWVGKLVKKISGL--ELPIQAVE-TSVCYWRIKEGDEADYAVGGDFPSFAS 258
               V    AW   L+  ++G+  ++PI+  +  +V    IK G           P   S
Sbjct: 197 ---VVNATNAW-ANLINAMAGIKTKIPIEPYKHQAVITQPIKRGTIN--------PMVIS 244
Query: 259 YGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSG 318
           +   H Y T +     +  I    G   D         P  + L+E +   F   +    
Sbjct: 245 FKYGHAYLTQTFHGGIIGGIGYEIGPTYDLT-------PTYEFLRE-VSYYFTKII---- 292
Query: 319 PAATQLCM-------YSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILAD 371
           PA   L +       Y+ TPD +  I  +  E   D  +A GFSGHGF MAP VG ++A+
Sbjct: 293 PALKNLLILRTWAGYYAKTPDSNPAIGRI--EELNDYYIAAGFSGHGFMMAPAVGEMVAE 350
Query: 372 LVLSGEAQ 379
           L+  G+ +
Sbjct: 351 LITKGKTK 358

>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus Acidocaldarius Length = 453

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +DV+++G G  GSSAAYQL++RG K LL++
Sbjct: 7  YDVLIIGGGFAGSSAAYQLSRRGLKILLVD 36

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	1e-121
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	1e-113
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	1e-109
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	8e-89
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	7e-40
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	1e-37
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	2e-35
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-34
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	2e-32
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	2e-22
3dme_A	369	Conserved exported protein; structural genomics, P	4e-10
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	4e-10
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	4e-10
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	4e-10
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-09
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-09
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	6e-09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	9e-09
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	4e-08
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	8e-08
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	1e-07
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	4e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	4e-07
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	4e-07
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	4e-07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	5e-07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	9e-07
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	1e-06
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2cul_A	232	Glucose-inhibited division protein A-related PROT	2e-06
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	2e-06
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	3e-06
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	4e-06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	3e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	4e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	4e-06
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	4e-06
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	5e-06
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	6e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	8e-06
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	8e-06
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	9e-06
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	1e-05
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	1e-05
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	1e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	2e-05
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-05
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	2e-05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	2e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	4e-05
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	7e-05
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	8e-05
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	8e-05
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	1e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-04
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	1e-04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	2e-04
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-04
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	3e-04
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	3e-04
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	3e-04
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	4e-04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	5e-04
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	5e-04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	5e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	5e-04
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	6e-04

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score =  357 bits (917), Expect = e-121
 Identities = 123/394 (31%), Positives = 195/394 (49%), Gaps = 21/394 (5%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YY 64
            +FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y
Sbjct: 2   THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREY 61

Query: 65  HPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKS-LRSVIASCRKNSVPHQVLDCR 123
            P+ L S  LW + + E  +K++ K      GP    + +   + + +++S+   +L+  
Sbjct: 62  VPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGD 121

Query: 124 QVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVK 183
           ++ +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +T V+      
Sbjct: 122 EINKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISP 180

Query: 184 DDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGD 243
           D     V + T++G  +   K +V+ GAW  KL+ K+  L++P+Q     V ++   E  
Sbjct: 181 D----SVKIETANG-SYTADKLIVSMGAWNSKLLSKL-NLDIPLQPYRQVVGFFESDES- 233

Query: 244 EADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPL---L 299
              Y+   DFP F     +   YG PS    GL       G   DPD      G      
Sbjct: 234 --KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDE 291

Query: 300 DSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGF 359
            +L+  ++    G   +       +CMY+ T D+ F+ID        +VV+A GFSGHGF
Sbjct: 292 SNLRAFLEEYMPGA--NGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGF 347

Query: 360 KMAPVVGRILADLVLSGEAQGVELRHFRIARFKE 393
           K +  VG +L+ L L+G+ +  ++  F I R   
Sbjct: 348 KFSSGVGEVLSQLALTGKTE-HDISIFSINRPAL 380

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score =  336 bits (863), Expect = e-113
 Identities = 104/390 (26%), Positives = 177/390 (45%), Gaps = 25/390 (6%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHP 66
           +D+I++G+G +G++A Y   + G   L+ +     H  GS HG++R IR  Y E   Y P
Sbjct: 3   YDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVP 62

Query: 67  MVLESSLLWEQAQSEIGYKVYFKAH-QFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
           +VL + +LW++          F      ++GP+++  L +V  S  +  +  + LD + +
Sbjct: 63  LVLRAQMLWDELSRHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGI 122

Query: 126 LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD 185
           + ++   I +P+N++G+     G ++   A+  +  LA + G     N  V  +      
Sbjct: 123 MARWPE-IRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDD-- 179

Query: 186 VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEA 245
              GVT+ T+ G E+  KK +V AG WV  L+      ELP+Q V     +++       
Sbjct: 180 --DGVTIETADG-EYQAKKAIVCAGTWVKDLLP-----ELPVQPVRKVFAWYQADG---- 227

Query: 246 DYAVGGDFPSFASYGDP--HVYGTPSLEYPGLIKIALHR-GYLCDPDRRPWGPGPLLDSL 302
            Y+V   FP+F          YG P+      +KI  H  G +            ++   
Sbjct: 228 RYSVKNKFPAFTGELPNGDQYYGFPA--ENDALKIGKHNGGQVIHSADERVPFAEVVSDG 285

Query: 303 KELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMA 362
            E                    C Y  +PD+DF+ID L G   ++ ++  G SGHGFK A
Sbjct: 286 SEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGH--DNTLLITGLSGHGFKFA 343

Query: 363 PVVGRILADLVLSGEAQGVELRHFRIARFK 392
            V+G I AD     ++   +L  FR++RF+
Sbjct: 344 SVLGEIAADFAQDKKSD-FDLTPFRLSRFQ 372

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score =  325 bits (836), Expect = e-109
 Identities = 81/395 (20%), Positives = 147/395 (37%), Gaps = 18/395 (4%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E++DV+VVG G +G + A+Q+A+RG + L+LE+  F +  G + G  R  R  Y ++   
Sbjct: 3   ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 62

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSE----NKSLRSVIASCRKNSVPHQVLD 121
            + LE+  LW   +S    ++  +      G ++       +    A   K SV ++ L 
Sbjct: 63  RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLK 122

Query: 122 CRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLK 181
              + +++     +P ++ G     GG I     ++   TLA   GA LR    V  ++ 
Sbjct: 123 ATDIERRFGF-RGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVP 181

Query: 182 VKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKE 241
             D    GV+V T  G  +   K V+  G +   L++ + G  L     E ++  +R   
Sbjct: 182 DAD----GVSVTTDRG-TYRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT 235

Query: 242 GDEADYAVGGDFPSFASYGDPHVYGTPSLEYPG--LIKIALHRGY--LCDPDRRPWGPGP 297
               +      F           YG     +     ++         L  P         
Sbjct: 236 -PVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADR 294

Query: 298 -LLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSG 356
             +D L   ++             +T L +    P++ F +      +     +    +G
Sbjct: 295 RQMDRLSGWLRDHLPTVDPDPVRTSTCLAVLPTDPERQFFLGTARDLMTHGEKLVVYGAG 354

Query: 357 HGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF 391
             FK  P+ GRI ADL +       ++        
Sbjct: 355 WAFKFVPLFGRICADLAVEDST-AYDISRLAPQSA 388

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score =  275 bits (704), Expect = 8e-89
 Identities = 66/429 (15%), Positives = 144/429 (33%), Gaps = 41/429 (9%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKT-LLLEQFDFLHHRGSSHGESRTIRATYPED-- 62
           ++  +++VGAG  G+S A  LA+RG     +L+ +       + +  ++ I +    +  
Sbjct: 5   KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNK 64

Query: 63  ----YYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLR-SVIASCRKNSVPH 117
                   +  E+   W+     +    Y          S+    R  V     ++    
Sbjct: 65  DEIEVNEILAEEAFNGWKND--PLFKPYYHDTGLLMSACSQEGLDRLGVRVRPGEDPNLV 122

Query: 118 QVLDCRQVLQKYSG---RIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNT 174
           ++    Q  +       + + P           G      A+      A + G      T
Sbjct: 123 ELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQRMGVKFVTGT 182

Query: 175 EVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSV 234
               V+ +  +       VT+ G+ +  ++  + AGA  G+ +      +  ++    ++
Sbjct: 183 PQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFL----DFKNQLRPTAWTL 238

Query: 235 CYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRG----------- 283
            +  +K  + A Y    + P   +      +  P  E  G IKI                
Sbjct: 239 VHIALKPEERALYK---NIPVIFNIERGF-FFEPD-EERGEIKICDEHPGYTNMVQSADG 293

Query: 284 -YLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGG 342
             +  P  +   P      ++ L++      +     +  ++C  + T +++F+ID    
Sbjct: 294 TMMSIPFEKTQIPKEAETRVRALLKETMPQ-LADRPFSFARICWCADTANREFLIDRHPQ 352

Query: 343 ELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNVKDY 402
                +V+  G SG GFK  P +G ++ D +  G+            ++  +   N    
Sbjct: 353 Y--HSLVLGCGASGRGFKYLPSIGNLIVDAME-GKVPQKIHELI---KWNPDIAANRNWR 406

Query: 403 EEQVSFSVP 411
           +    F  P
Sbjct: 407 DTLGRFGGP 415

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score =  146 bits (371), Expect = 7e-40
 Identities = 71/442 (16%), Positives = 133/442 (30%), Gaps = 72/442 (16%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKT-LLLEQFDFLHHRGSSHGESRT---IRATYPE 61
             FD +VVGAG++G +AAY L      + L+++        G S    R+    R  +  
Sbjct: 22  PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA-GHAPGSGDS---GRSMAAFRTFFSS 77

Query: 62  DYYHPMVLESSLLWEQAQSEIGYKVYFKA--HQFDMGPSENKSLRSVIASCRKNSVPHQV 119
                +   +  L+E AQ   G  +      + F       + +   +    +    + +
Sbjct: 78  TMNRLVAGSTVRLFEDAQ-RGGEDLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDYLI 136

Query: 120 LDCRQVLQKYSGRIEI----------PENWVGVT-TELGGVIKPTKAVSMFQTLAIKNGA 168
           +   ++ ++      +            +  G       G +   K V  +   A   G 
Sbjct: 137 IPPEELERRLGMNTRVSDGEEAEVLGVGDVEGAVLIRSAGFLDAEKVVDYYYRRASGAGV 196

Query: 169 VLRDNTEVKTVLKVKDDVRG------------GVTVVTSSGEEFWGKKCVV-TAGAWVGK 215
                  V  V        G                V S G      + +V  AG W  +
Sbjct: 197 EFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVAAGVWSNR 256

Query: 216 LVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGL 275
           L+  + G++   +  +     +R+    E    +       A  G P +   P      +
Sbjct: 257 LLNPL-GIDTFSRPKK--RMVFRVSASTEGLRRIMR-EGDLAGAGAPPLIILPKRVL--V 310

Query: 276 IKIALHRGYLC---DPDRRPWGPGPLLD----SLKELIQGRFAGRVDSSGPAATQL---- 324
                   +     D   RP+                I    +  +    P         
Sbjct: 311 RPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILPILSLYL----PQFQDAYPSG 366

Query: 325 ---CMYSMTPDKDFVIDFLGGELGED-VVVAGGFSGHGFKMAPVVGRILADLVLSGEAQ- 379
                Y ++ D + V+     E  E  +VVA G SG G   +  +GR+ A + L  E+  
Sbjct: 367 GWAGHYDISFDANPVV----FEPWESGIVVAAGTSGSGIMKSDSIGRVAAAVALGMESVE 422

Query: 380 -------GVELRHFRIARFKEN 394
                   V+       R+++ 
Sbjct: 423 LYGGVEMPVKWMGLEGRRYEQE 444

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score =  140 bits (354), Expect = 1e-37
 Identities = 80/423 (18%), Positives = 134/423 (31%), Gaps = 84/423 (19%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKT--LLLEQFDFLHHRGSSHGESRT---IRATYP 60
           +++D I+VG G  G + AY LAK    T   +LE+  +L    +    +R    IR+ Y 
Sbjct: 20  KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEK-GWL----AGGNMARNTTIIRSNYL 74

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAH-QFDMGPSEN--KSLRSVIASCRKNSVPH 117
            D    +  +S  LWEQ   ++ Y   F      ++  +    +     + + + N V  
Sbjct: 75  WDESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDA 134

Query: 118 QVLDCRQVLQKYSG-RIEIPENWV---GVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDN 173
           + LD  QV +            +           G+ K       F   A + G  +  N
Sbjct: 135 EWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQN 194

Query: 174 TEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVE-- 231
            EV   +K  + V G   V T+ G      K  +        L +   G ELPIQ+    
Sbjct: 195 CEVTGFIKDGEKVTG---VKTTRG-TIHAGKVALAGAGHSSVLAEMA-GFELPIQSHPLQ 249

Query: 232 ------------------TSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEY- 272
                                 Y       E    +G    S+  YG        +    
Sbjct: 250 ALVSELFEPVHPTVVMSNHIHVYVSQAHKGE--LVMGAGIDSYNGYGQR-----GAFHVI 302

Query: 273 PGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPD 332
              +  A+                P+       +   + G             +   T D
Sbjct: 303 QEQMAAAVEL-------------FPIFARAH--VLRTWGG-------------IVDTTMD 334

Query: 333 KDFVIDFLGGELG-EDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF 391
              +I     +   +++ V  G+   GFK  P  G  LA  + + E      + F + RF
Sbjct: 335 ASPII----SKTPIQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEPH-ELNKPFSLERF 389

Query: 392 KEN 394
           +  
Sbjct: 390 ETG 392

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score =  133 bits (336), Expect = 2e-35
 Identities = 61/412 (14%), Positives = 102/412 (24%), Gaps = 66/412 (16%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT---IRATYPED 62
              D +V+GAGI G+S  Y L+  G+  +L  +          H   R+       Y   
Sbjct: 8   IEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQP-----GYHSTGRSAAHYTVAYGTP 62

Query: 63  YYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENK--SLRSVIASCRKNSVPHQVL 120
               +   S   ++   +              +    +    LR    S +      ++L
Sbjct: 63  QVRALTAASRAFFDNPPAGFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLL 122

Query: 121 DCRQVLQKYSGRIEIPENWVGVT-TELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTV 179
           D  Q        +   +   G T    G  I        +     +N   +  N E   +
Sbjct: 123 DAEQACSIVPV-LR-RDKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEI 180

Query: 180 LKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYW-R 238
            +       G   V      +     V  AGAW   +        L +Q    S   +  
Sbjct: 181 RR-----VDGAWEVRCDAGSYRAAVLVNAAGAWCDAIAGLAGVRPLGLQPKRRSAFIFAP 235

Query: 239 IKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLC----DPDRRPWG 294
               D  D+ +           D   Y  P              G L     + D     
Sbjct: 236 PPGIDCHDWPMLVSL-------DESFYLKP------------DAGMLLGSPANADPVEAH 276

Query: 295 PGPLLDSLKELIQGRF-------AGRVDSS--GPAATQLCMYSMTPDKDFVIDFLGGELG 345
                                    R + +  G         S   D D V  +      
Sbjct: 277 DVQPEQLDIATGMYLIEEATTLTIRRPEHTWAGL-------RSFVADGDLVAGYAANA-- 327

Query: 346 EDVVVAGGFSGHGFKMAPVVGRILADLVLSGE------AQGVELRHFRIARF 391
           E         G+G + +  +G   A L+            G++       R 
Sbjct: 328 EGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAMLSPRRL 379

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score =  130 bits (330), Expect = 2e-34
 Identities = 76/410 (18%), Positives = 136/410 (33%), Gaps = 70/410 (17%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
            +++ +V+G GI+GS+ AY LAK  + T L E    +  R +S      + A    +   
Sbjct: 16  RHYEAVVIGGGIIGSAIAYYLAKENKNTALFES-GTMGGRTTSAAAG-MLGAHAECEERD 73

Query: 66  PM---VLESSLLWEQAQSEI----GYKVYFKAH---QFDMGPSENKSLRSVIASCRKNSV 115
                 + S  L++    E+    G  +        +      +   LR +         
Sbjct: 74  AFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDL-----D 128

Query: 116 PHQVLDCRQVLQKYSGRIEIPENWVGVT-TELGGVIKPTKAVSMFQTLAIKNGAVLRDNT 174
                   +VL+K         +  G +  +    ++P      +   A   GA + ++T
Sbjct: 129 SVSWYSKEEVLEKEPY---ASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHT 185

Query: 175 EVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSV 234
            V  V +      G    + +   + W    VV +G W G   K++ GL      V+   
Sbjct: 186 PVLHVER-----DGEALFIKTPSGDVWANHVVVASGVWSGMFFKQL-GLNNAFLPVKGEC 239

Query: 235 CYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWG 294
                 +            P   +    H Y  P     G + +    G         W 
Sbjct: 240 LSVWNDDI-----------PLTKTLYHDHCYIVPRKS--GRLVV----G--ATMKPGDWS 280

Query: 295 PGPLLDSLKELIQG---RFAGRVDSSGPAATQLCM-------YSMTPDKDFVIDFLGGEL 344
             P L  L+ +++              PA   + +          T D    I    G  
Sbjct: 281 ETPDLGGLESVMKKAKTML--------PAIQNMKVDRFWAGLRPGTKDGKPYI----GRH 328

Query: 345 GE--DVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFK 392
            E   ++ A G   +G  +AP  G +++DL+++ E     L  FRI R +
Sbjct: 329 PEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRKE 378

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score =  125 bits (316), Expect = 2e-32
 Identities = 94/414 (22%), Positives = 165/414 (39%), Gaps = 70/414 (16%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH--GESRTIRATYPEDY 63
           E  +++V+G GI+G + A++LAKRG++  ++E+  F+    +         IR  + ++ 
Sbjct: 4   EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEK-RFIGSGSTFRCGT---GIRQQFNDEA 59

Query: 64  YHPMVLESSLLWEQAQSE--IGYK---VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ 118
              ++  S  LW++   E    +K     F  +       E K+ +  I    K  VP +
Sbjct: 60  NVRVMKRSVELWKKYSEEYGFSFKQTGYLFLLYD----DEEVKTFKRNIEIQNKFGVPTK 115

Query: 119 VLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKT 178
           ++   +  +     ++I E          G   P +A + F   A + GA L + TEVK 
Sbjct: 116 LITPEEAKEIVPL-LDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKG 174

Query: 179 VLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI-SGLELPIQAVE-----T 232
            L   ++++G   V T+ G        V    AW   +        ++PI+  +     T
Sbjct: 175 FLIENNEIKG---VKTNKG-IIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVIT 230

Query: 233 SVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRP 292
                 IK G      +        S+   H Y T    + G I      G     +  P
Sbjct: 231 Q----PIKRGTINPMVI--------SFKYGHAYLTQ--TFHGGIIG----GI--GYEIGP 270

Query: 293 W-GPGPLLDSLKELIQG---RF-----AGRVDS-SGPAATQLCMYSMTPDKDFVIDFLGG 342
                P  + L+E+                + + +G        Y+ TPD +  I    G
Sbjct: 271 TYDLTPTYEFLREVSYYFTKIIPALKNLLILRTWAGY-------YAKTPDSNPAI----G 319

Query: 343 ELGE--DVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKEN 394
            + E  D  +A GFSGHGF MAP VG ++A+L+  G+ + + +  +   RF+  
Sbjct: 320 RIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGKTK-LPVEWYDPYRFERG 372

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 97.4 bits (241), Expect = 2e-22
 Identities = 61/381 (16%), Positives = 105/381 (27%), Gaps = 28/381 (7%)

Query: 3   FSGENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           F+ E FD++V+GAG MG++ A+ L +   G+  LL+E+    +  G++        A   
Sbjct: 32  FTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDI 91

Query: 61  EDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
                     +      A             + +  P  +       +           L
Sbjct: 92  PAGQEAQAEWTREQLLGALGSGKTL------EVEDRPLLHLLPAGEGSGLTPT------L 139

Query: 121 DCRQVLQKYSGRIEIPENWVGVTTE-LGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTV 179
           D      +    ++ P        +      +P     +    AI  GA L  NT  + V
Sbjct: 140 DALADFPEALALLD-PARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELV 198

Query: 180 LKV----KDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVC 235
                  +  V     +V     +      +V AGA    LV++  GL            
Sbjct: 199 PGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAAGPALVEQGLGLHTRHGRAYRQFP 258

Query: 236 YWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYP-GLIKIALHRGYLCDPDRRP-- 292
              +  G +               G   +        P G          +    RR   
Sbjct: 259 RLDLLSGAQTPVLRASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELL 318

Query: 293 WGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAG 352
                L+D++  L          S+      L +    PD          EL   + +  
Sbjct: 319 EDLVGLMDAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQA----EELAPGLHLLL 374

Query: 353 GFSGHGFKMAPVVGRILADLV 373
           G       +       LA  V
Sbjct: 375 GGPLADT-LGLAAAHELAQRV 394

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 48/245 (19%), Positives = 82/245 (33%), Gaps = 55/245 (22%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR---TIRATYPED 62
            + D IV+GAG++G + A  LA  G + L+ E          +   SR    I A     
Sbjct: 3   TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEA----AEGIGTGTSSRNSEVIHAGI--- 55

Query: 63  YYHPMVLESSL------LWEQAQSEIGYKVYFKAHQFDM----------GPSENKSLRSV 106
           YY    L++ L      L  +         Y  A                 +E   L S+
Sbjct: 56  YYPADSLKARLCVRGKHLLYE---------YCAARGVPHQRLGKLIVATSDAEASQLDSI 106

Query: 107 IASCRKNSVPH-QVLDCRQVLQKY-----SGRIEIPENWVGVTTELGGVIKPTKAVSMFQ 160
                 N V   Q +D     +       +  +  P           G++     +  +Q
Sbjct: 107 ARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPS---------TGIVDSHALMLAYQ 157

Query: 161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGK-KCVVT-AGAWVGKLVK 218
             A  +GA L  +T +    +V+ +  GG  +     E      + ++  AG     L +
Sbjct: 158 GDAESDGAQLVFHTPL-IAGRVRPE--GGFELDFGGAEPMTLSCRVLINAAGLHAPGLAR 214

Query: 219 KISGL 223
           +I G+
Sbjct: 215 RIEGI 219

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Length = 676

 Score = 60.7 bits (146), Expect = 4e-10
 Identities = 54/410 (13%), Positives = 111/410 (27%), Gaps = 48/410 (11%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
           +  ++G GI  +  +  L +RG +  L    +       + G  +         +   + 
Sbjct: 274 EAAIIGGGIASALLSLALLRRGWQVTLYCADE--APALGASGNRQGALYPLLSKHDEALN 331

Query: 69  LESSLLWEQAQSEIGYKVYFKAHQF--DMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
              S  +  A+           H +        ++  +  IA      +P ++    +  
Sbjct: 332 RFFSNAFTFARRFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEA- 390

Query: 127 QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV 186
                   +  N  G+T   GG + P +       LA + G  +    +++   +  D  
Sbjct: 391 NAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDD-- 448

Query: 187 RGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEAD 246
                +  +  ++      V+  G  + +         LP+ +V           G  + 
Sbjct: 449 --CWLLNFAGDQQATHSVVVLANGHQISRF---SQTSTLPVYSVA----------GQVSH 493

Query: 247 YAVGGDFPSFASYGDPHVYGTPSLEYPGLIKI-ALHRGYLCDPDRRPWGPGPLLDSLKEL 305
                +            Y TP         I A +     D              L + 
Sbjct: 494 IPTTPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDC 553

Query: 306 --------------IQGRFAGRVDSSG--PAATQLCMYSMTPDKDFVIDFLGGELG---- 345
                          + R   R  +    P    +  Y  T  +   +     E      
Sbjct: 554 FPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPV 613

Query: 346 -EDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVE---LRHFRIARF 391
            +D+ +       G   AP+   ILA   +S E   ++   L      R 
Sbjct: 614 FDDLFMFAALGSRGLCSAPLCAEILAAQ-MSDEPIPMDASTLAALNPNRL 662

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 35/260 (13%), Positives = 77/260 (29%), Gaps = 60/260 (23%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL------HHR-------GSSHGESRTI 55
             +VVGAG+ G  A   LA+ G + ++LE+   +                G+ H     +
Sbjct: 2   RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALH-----M 56

Query: 56  RATYPEDYYHPMVLESSLLWEQAQSEIGYKVYFKAHQFDMG-------PSENKSLRSVIA 108
                +     ++       E   S    K+ ++   F            E      ++A
Sbjct: 57  IPHGEDGPLAHLLRILGAKVEIVNSNPKGKILWEGKIFHYRESWKFLSVKEKAKALKLLA 116

Query: 109 SCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSM---------- 158
             R N +P + +   + +++  G  E   + +         +  +   ++          
Sbjct: 117 EIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAAL 176

Query: 159 -----------FQTLA-------IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEF 200
                       + +        ++N   +    EV  +      +     V T   EE+
Sbjct: 177 RWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEIN-----IEEK-KVYTRDNEEY 230

Query: 201 WGKKCVVTAGAW-VGKLVKK 219
                +   G     KL+ +
Sbjct: 231 SFDVAISNVGVRETVKLIGR 250

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Length = 689

 Score = 60.7 bits (146), Expect = 4e-10
 Identities = 59/429 (13%), Positives = 114/429 (26%), Gaps = 74/429 (17%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
           D+ ++G GI+ +  A  L +RG    L           S + +     A YP        
Sbjct: 266 DIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQGASGNRQG----ALYPLLNGKNDA 321

Query: 69  LES--------SLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSV--IASCRKNSVPHQ 118
           LE+        +        E G     +         ++KS   +  +   +      +
Sbjct: 322 LETFFTSAFTFARRQYDQLLEQGIAFDHQWCGVSQLAFDDKSRGKIEKMLHTQWPVEFAE 381

Query: 119 VLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKT 178
            +   Q+ +                   GG + P+        LA +NG       E++ 
Sbjct: 382 AMSREQLSELAGLDCAHDGIHY----PAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQR 437

Query: 179 VLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLEL------------- 225
           + ++         +     +       V+ A        ++   L L             
Sbjct: 438 LKRID----SQWQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLPLSAVRGQVSHIPTT 493

Query: 226 -----PIQAVETSVCYWRIKEGDE-----ADYAVGGDFPSFASYGDPHVYGT-----PSL 270
                  Q +        +   ++     A Y  G     F                P +
Sbjct: 494 PVLSQLQQVLCYDGYLTPVNPANQHHCIGASYQRGDIATDFRLTEQQENRERLLRCLPQV 553

Query: 271 EYPGLIKIALHRGYLCD----PDRRP-WGPGPLLDSLKELIQGRFAGRVDSSGPAATQLC 325
            +P  + ++ ++          D  P  G  P   +     Q                + 
Sbjct: 554 SWPQQVDVSDNQARCGVRCAIRDHLPMVGAVPDYAATLAQYQDLSRRIQHGGESEVNDIA 613

Query: 326 MYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVE--- 382
           +  + P               ++ + GG    G   AP+V  ILA   + GE   ++   
Sbjct: 614 VAPVWP---------------ELFMVGGLGSRGLCSAPLVAEILAAQ-MFGEPLPLDAKT 657

Query: 383 LRHFRIARF 391
           L      RF
Sbjct: 658 LAALNPNRF 666

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
            +DV+++G G  GSSAAYQL++RG K LL++   +
Sbjct: 5  LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL-HHRGSS 48
          M    E FD+IV+G G  GS+ A  +A RG + LLLE+  F  H  G S
Sbjct: 1  MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGES 49

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 4  SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL-HHRGSS 48
            E  DV+V+GAG  G+ AA  + K G K  ++E+  F     G S
Sbjct: 2  QREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGES 47

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL-HHRG 46
              V ++G G  GS A   L K G    + E+  F  +  G
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG 63

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 53.3 bits (127), Expect = 8e-08
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ-FDFLHHRGSSHGESRTIRATYPEDYY 64
             +DV++VG+G +G + A +L   G K  + +        +  +H ++        + + 
Sbjct: 45  IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 104

Query: 65  HP 66
           + 
Sbjct: 105 NV 106

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 16/92 (17%), Positives = 31/92 (33%)

Query: 4  SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY 63
          +G     +V+G G   + +A +L + G +TL+LE     +  G        +        
Sbjct: 2  NGGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSS 61

Query: 64 YHPMVLESSLLWEQAQSEIGYKVYFKAHQFDM 95
          +     E+ L        +   +   A   D 
Sbjct: 62 WFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDR 93

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 47/371 (12%), Positives = 100/371 (26%), Gaps = 50/371 (13%)

Query: 10  VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVL 69
           V+V+GAG++G S A  + +R    L          R +    +           + P + 
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAG-----LWQPYLS 57

Query: 70  ESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRK----NSVPHQVLDCRQV 125
           + +   E   S+  +             +    L S      +     S    VL  R++
Sbjct: 58  DPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKL 117

Query: 126 LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD 185
             +    +++  ++         +++    +        + G                  
Sbjct: 118 TPR---ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKF--------------- 159

Query: 186 VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEA 245
            +  V        E      V   G W G L +     +  +Q     +           
Sbjct: 160 FQRKVESFEEVARE-GADVIVNCTGVWAGALQR-----DPLLQPGRGQIMKVD---APWM 210

Query: 246 DYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKEL 305
            + +    P    Y  P++        PG   + L  G +       W     +     +
Sbjct: 211 KHFILTHDPERGIYNSPYI-------IPGTQTVTL--GGIFQLGN--WSELNNIQDHNTI 259

Query: 306 IQG--RFAGRVDSSGPAATQLCMYSMTPD-KDFVIDFLGGELGEDVVVAGGFSGHGFKMA 362
            +G  R    + ++     +     + P  +        G    +V+   G  G+G  + 
Sbjct: 260 WEGCCRLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIH 319

Query: 363 PVVGRILADLV 373
                  A L 
Sbjct: 320 WGCALEAAKLF 330

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 2  EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +   + FD ++VGAG  GS  A +LA  GQ+ L++++
Sbjct: 24 QQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR 60

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* Length = 443

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           V VVGAG+ GS AA+ L + G    L E
Sbjct: 3  RVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 4  SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           G+    +V+G+G  G+ AA +L + G  T ++E 
Sbjct: 8  DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 42

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* Length = 637

 Score = 50.9 bits (123), Expect = 5e-07
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          M +  + FDV+V+G G  G  AA   A+ G KT + 
Sbjct: 21 MAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMF 56

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
           +  DV+VVG+G  G SAA      G K +L+E+   +   G++
Sbjct: 125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI--GGNA 165

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 10/33 (30%), Positives = 22/33 (66%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          ++  +++VGAG  G+    QLA++G +  +++Q
Sbjct: 2  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQ 34

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 36/257 (14%), Positives = 68/257 (26%), Gaps = 60/257 (23%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ-----------------FD----------- 40
             +V+GAG+ G  +A +L+K G +  + E+                              
Sbjct: 2   KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGP 61

Query: 41  --FLHHRGSS--------HGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY----KV 86
              L                E  T+R    +     +     + +    S + Y    K+
Sbjct: 62  GGPLACFLKEVEASVNIVRSEMTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMKI 121

Query: 87  YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIP---------- 136
                          SL++ I S   +    +  D            E+P          
Sbjct: 122 ALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIEN 181

Query: 137 -ENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS 195
              + G     GG      A    +T+   NG  +    EV  +L +++   G    + +
Sbjct: 182 MYRFGGTGIPEGGCKGIIDA---LETVISANGGKIHTGQEVSKIL-IEN---GKAAGIIA 234

Query: 196 SGEEFWGKKCVVTAGAW 212
                     +   G  
Sbjct: 235 DDRIHDADLVISNLGHA 251

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +D IVVG G  G  AA  L   G+K LLLE
Sbjct: 2  YDAIVVGGGFSGLKAARDLTNAGKKVLLLE 31

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 61/448 (13%), Positives = 110/448 (24%), Gaps = 162/448 (36%)

Query: 24  YQLAKRGQKTLL----------LEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL 73
              +K  +  LL             F+            + +  T               
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNL---------SCKILLTT-----------RFKQ 276

Query: 74  LWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR--------QV 125
           + +   +     +    H   + P E KSL      CR   +P +VL           + 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 126 LQKYSGRIEIPENWVGVTTE-LGGVIK-------PTKAVSMFQTLAIKNGAVLRDNTEVK 177
           ++         +NW  V  + L  +I+       P +   MF  L++        +  + 
Sbjct: 337 IRDGLATW---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIP 388

Query: 178 T-VLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCY 236
           T +L +                  W           V KL K              S+  
Sbjct: 389 TILLSL-----------------IWFDVIKSDVMVVVNKLHKY-------------SLV- 417

Query: 237 WRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEY--PGLIKIALHR----GYLCDPDR 290
               E    +           +   P +Y    LE       + ALHR     Y      
Sbjct: 418 ----EKQPKES----------TISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 291 RPWGPGPL-LDS---------LKELIQGRFAGRVDSSGPAATQLCMYSMTPDK--DFVID 338
                 P  LD          LK +                      ++      DF   
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPE----------------RMTLFRMVFLDF--R 501

Query: 339 FLGGEL---GEDVVVAGG----------FSGHGFKMAPVVGRILADL---VLSGEAQGVE 382
           FL  ++         +G           +  +     P   R++  +   +   E   + 
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 383 LRHFRIARFK-ENPKGNVKDYEE---QV 406
            ++  + R         +  +EE   QV
Sbjct: 562 SKYTDLLRIALMAEDEAI--FEEAHKQV 587

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 Length = 232

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
            + V++VGAG  G+  A+ LA++G +  LL
Sbjct: 2  AAYQVLIVGAGFSGAETAFWLAQKGVRVGLL 32

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL 42
          M     + DV+V+GAG  G  AA +L +  G   ++++  +  
Sbjct: 4  MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 45/262 (17%), Positives = 81/262 (30%), Gaps = 55/262 (20%)

Query: 148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVV 207
           G+    +AV +        G   R +T V  + +    V G   V T+ G        VV
Sbjct: 146 GLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTG---VQTADGV--IPADIVV 200

Query: 208 TAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGD-PHVYG 266
           +   + G  +  + G+ +P+  +                Y      P+     D P+   
Sbjct: 201 SCAGFWGAKIGAMIGMAVPLLPL-------------AHQYVKTTPVPAQQGRNDQPNGAR 247

Query: 267 TPSLEYPG------------LIKIALHRGYLCDPD----RRPWG-PGPLLDSLKELIQGR 309
            P L +               I    HR    D D      P       + S  +     
Sbjct: 248 LPILRHQDQDLYYREHGDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLED 307

Query: 310 FAGRVDSSG---PAATQL-------CMYSMTPDKDFVIDFLGGELGEDVVVAGGF--SGH 357
           F    +++    PA            ++S TPD   +       LGE   + G +     
Sbjct: 308 FLPAWEATKQLLPALADSEIEDGFNGIFSFTPDGGPL-------LGESKELDGFYVAEAV 360

Query: 358 GFKMAPVVGRILADLVLSGEAQ 379
               +  V + +A+L+ +G ++
Sbjct: 361 WVTHSAGVAKAMAELLTTGRSE 382

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQ 38
           ++++GAGI+G++ A +L  RG     +L+Q
Sbjct: 6  RIVIIGAGIVGTNLADELVTRGWNNITVLDQ 36

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 4  SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
                V V+GAG+ G +AAY+L   G    + E
Sbjct: 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFE 43

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +D I+VG+G+ G+  A +L K  +K L++E+
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEK 32

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
           E  DV+++G+G  G +AA      G K +LLE+       G++
Sbjct: 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP--GGNT 165

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Length = 561

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 2  EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          E S +  D++V+G GI G+  A     RG +T L+E  DF
Sbjct: 13 EMSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDF 52

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} Length = 641

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          +      +DVIVVGAG  G  AA  +A+ G   LL+
Sbjct: 15 VPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLI 50

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 16/71 (22%), Positives = 33/71 (46%)

Query: 2  EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE 61
           F GE++DVI++G G+     +  L+  G+K L+L++  +     +S   +       P+
Sbjct: 15 YFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPK 74

Query: 62 DYYHPMVLESS 72
          +       E+ 
Sbjct: 75 ENIPSKYGENR 85

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           E   V+VVGAG  G +A+    K G   +L++
Sbjct: 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVD 151

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Length = 571

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 2  EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          +   E  D++++G GI G+  A Q A  G KT L+E  DF
Sbjct: 27 KMQQEELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDF 66

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 46.8 bits (110), Expect = 9e-06
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
              ++++GAG  G  AA +L + G K   L 
Sbjct: 8  LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLY 39

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
             +V VVG GI G + A+ L  RG   +LLE
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE 46

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
          M+     FD+ VVG+G  G + A ++A +  ++ L+LE+     H G   G + +     
Sbjct: 1  MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP---HIG---GNAYSEAEPQ 54

Query: 60 PEDYYHP 66
               H 
Sbjct: 55 TGIEVHK 61

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          DV +VGAG  G +AA  L K G    ++E
Sbjct: 7  DVAIVGAGPSGLAAATALRKAGLSVAVIE 35

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Length = 501

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          E  D+IV+G GI G+  A   A RG   L+LE  D 
Sbjct: 2  ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDL 37

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
             DV+V G GI G +A+ + A+ G   L+LE+    
Sbjct: 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKT-LLLE 37
           + ++GAG  G +A   L + G     +LE
Sbjct: 8  RIAIIGAGPAGLAAGMYLEQAGFHDYTILE 37

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A Length = 651

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          M +  + FDVI++G G  G+ AA   A+ GQ+TLLL
Sbjct: 23 MFYP-DPFDVIIIGGGHAGTEAAMAAARMGQQTLLL 57

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          DV+VVG GI G +AA  L   G   ++LE
Sbjct: 6  DVVVVGGGISGMAAAKLLHDSGLNVVVLE 34

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           V+V+G G  G  +A++L K G K  +LE
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLE 41

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +DVIV+G G  G +A   L   G KTLLLE
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLE 69

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          E +DVIV+G G+     +  ++  G+K L +++  +
Sbjct: 5  EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPY 40

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           V++VGAG+ G SAAY LA  G +  +LE
Sbjct: 35 HVVIVGAGMAGLSAAYVLAGAGHQVTVLE 63

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           + +  ++DVIV+G G  G  AA   A+ G   LLL+
Sbjct: 20 FQSNAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLD 56

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIR 56
           V++VGAG+ GS  A  L ++    L L  +D     G   G   T  
Sbjct: 3  QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSG---GRMTTAC 47

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +  + I++GAG  G   A QLAK G+   + + 
Sbjct: 3  QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDN 35

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 4  SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
            E  DV+++GAG  G   A +  KRG++ L+++ 
Sbjct: 24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDH 58

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 4  SGENFDVIVVGAGIMGSSAAYQLAKR------GQKTLLLE 37
          S     V+++G GI G +AA+ + K         +  L+E
Sbjct: 2  SDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVE 41

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           + DV++ G GI G+  AY L ++G + +++EQ
Sbjct: 5  NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQ 37

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 45/252 (17%), Positives = 72/252 (28%), Gaps = 49/252 (19%)

Query: 4   SGENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLE--------------QFDFLHHRGSS 48
           S     VI++GAGI G  AA  L + G Q  L+LE                   +  G+S
Sbjct: 5   SPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64

Query: 49  --HGESR---------------TIRATYPED--YYHPMVLESSLLWEQAQSEIGYKVYFK 89
             H                     R  + +D   Y           ++   EI      K
Sbjct: 65  WHHDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDNEMSK 124

Query: 90  AHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTEL--- 146
             + +       S  S      K  +  +       ++         E W G+  +L   
Sbjct: 125 FAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSA 184

Query: 147 --------GGVIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG 197
                   G         S+ Q +A       L+ + EVK    +  +    VTV    G
Sbjct: 185 KDTYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVK---SITREPSKNVTVNCEDG 241

Query: 198 EEFWGKKCVVTA 209
             +     ++T 
Sbjct: 242 TVYNADYVIITV 253

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 14/189 (7%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
            V+V+G+G++G S+A  LA++G    +L + D      S    S      +    + P +
Sbjct: 8   RVVVLGSGVIGLSSALILARKGYSVHILAR-DLPEDVSSQTFAS-----PWAGANWTPFM 61

Query: 69  LESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQK 128
             +    +    E  +K +        G +         A      + H   D     + 
Sbjct: 62  TLTDGPRQAKWEESTFKKW--VELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRP 119

Query: 129 YSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRG 188
                E P   +GVT +    +   K          K GA      E +TV  ++    G
Sbjct: 120 LPSS-ECPPGAIGVTYD-TLSVHAPKYCQYLARELQKLGATF----ERRTVTSLEQAFDG 173

Query: 189 GVTVVTSSG 197
              VV ++G
Sbjct: 174 ADLVVNATG 182

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 9  DVIVVGAGIMGSSAAYQLAKR--GQKTLLLE 37
           +++VG GI G +AAY   +        LLE
Sbjct: 6  RLVIVGGGITGLAAAYYAERAFPDLNITLLE 36

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          ++ DV+V+G G  G SA Y L + G   ++L+
Sbjct: 2  DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILD 33

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
           ++DVIV+G GI     +  L+  G+K L +++ D 
Sbjct: 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH 45

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           DV+VVGAG  G +AA + ++ G + +LL++
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLDE 159

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQ 38
            DV+VVGAG  G SAAY+++K    +  ++EQ
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ 71

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 4  SGENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLE 37
          +     VIVVGAG+ G SAA +L++ G    L+LE
Sbjct: 1  ATVGPRVIVVGAGMSGISAAKRLSEAGITDLLILE 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	100.0
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	100.0
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	100.0
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	100.0
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	100.0
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	100.0
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	100.0
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	100.0
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	100.0
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	100.0
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	100.0
3dme_A	369	Conserved exported protein; structural genomics, P	100.0
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	100.0
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	100.0
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	100.0
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	100.0
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.98
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.97
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.96
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.78
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.78
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.76
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.74
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.71
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.71
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.71
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.71
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.71
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.69
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.69
3atr_A	453	Conserved archaeal protein; saturating double bond	99.68
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.67
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.64
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.64
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.64
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.63
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.61
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.59
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.59
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.59
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.58
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.57
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.54
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.54
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.54
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.53
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.53
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.52
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.51
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.51
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.51
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.48
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.46
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.46
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.46
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.45
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.45
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.45
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.44
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.42
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.41
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.41
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.41
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.4
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.4
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.39
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.38
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.36
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.34
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.33
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.32
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.32
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.32
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.31
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.31
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.3
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.3
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.3
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.3
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.29
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.29
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.28
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.28
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.27
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.27
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.27
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.27
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.27
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.26
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.26
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.26
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.26
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.26
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.23
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.23
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.22
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.22
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.22
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.21
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.2
4dna_A	463	Probable glutathione reductase; structural genomic	99.19
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.18
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.18
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.18
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.18
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.17
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.17
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.16
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.15
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.15
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.15
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.15
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.13
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.13
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.13
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.13
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.12
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.12
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.12
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.12
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.12
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.09
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.08
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.08
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.08
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.07
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.06
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.06
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.06
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.05
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.05
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.05
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.05
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.04
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.03
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.03
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.02
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.0
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.99
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.99
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.99
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.98
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.97
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.97
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.97
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.95
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.95
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.92
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.92
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.92
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.92
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.91
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.9
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.9
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.88
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.88
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.87
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.87
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.86
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.86
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.85
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.85
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.84
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.84
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.83
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.81
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.81
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.8
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.8
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.77
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.77
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.76
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.75
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.74
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.73
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.72
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.7
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.7
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.69
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.69
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.67
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.66
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.61
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.6
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.6
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.58
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.58
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.58
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.55
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.54
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.54
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.53
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.5
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.5
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.49
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.48
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.48
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.46
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.43
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.43
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.43
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.42
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.41
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.37
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.37
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.36
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.36
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.36
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.35
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.32
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.3
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.29
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.28
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.27
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.25
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.17
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.07
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.06
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.06
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.05
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.04
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.04
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.02
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.97
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.96
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.96
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.93
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.9
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.82
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.81
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.81
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.76
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.76
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.71
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.7
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.68
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.67
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.66
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.64
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.64
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.63
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.61
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.61
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.57
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.56
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.51
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.51
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.5
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.46
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.39
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.32
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.15
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.08
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.98
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.96
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.94
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.83
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.74
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.73
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.68
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.64
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.63
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.55
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.52
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.45
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.43
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.42
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.3
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.27
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.24
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.2
4fk1_A	304	Putative thioredoxin reductase; structural genomic	96.16
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.12
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.06
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.05
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.02
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.01
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.0
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.99
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.97
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.92
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.92
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.85
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.84
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.8
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.73
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.7
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.68
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.66
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.64
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.64
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.63
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.58
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.58
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.56
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.56
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.54
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.52
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.52
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.51
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.49
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.47
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.44
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.42
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.36
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.34
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.34
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.29
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.26
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.24
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.22
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.19
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.18
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.18
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.16
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.14
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.11
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.11
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	95.1
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.08
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.04
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.99
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.94
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.93
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.91
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.88
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.88
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	94.87
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	94.84
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.83
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.81
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.8
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.76
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.75
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.72
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	94.69
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.65
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	94.65
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	94.63
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.63
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.61
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.61
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.59
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.59
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.52
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.52
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	94.51
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.5
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.5
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.48
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.46
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.43
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.41
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.4
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.39
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.36
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.36
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.33
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.31
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.29
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.28
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.27
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.27
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.23
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.23
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.16
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	94.16
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.16
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.15
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.14
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.14
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.12
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.05
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	94.02
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.99
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.97
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.96
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.95
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	93.95
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.94
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.92
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.92
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.91
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	93.91
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.91
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.9
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	93.9
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	93.89
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.88
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	93.85
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.85
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.83
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.82
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.75
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.71
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.71
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.69
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.69
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.68
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.68
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.62
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.6
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.6
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.58
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.57
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.56
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.53
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	93.49
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.49
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.48
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.41
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.4
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.33
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.24
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.22
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.2
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.16
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.14
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.12
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.11
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.08
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	93.05
4dna_A	463	Probable glutathione reductase; structural genomic	93.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	92.98
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	92.94
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.93
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.92
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	92.92
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	92.9
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	92.88
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.87
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	92.87
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	92.83
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.81
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	92.79
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.79
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	92.72
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.71
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	92.68
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	92.64
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.59
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.53
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.49
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	92.44
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.39
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.37
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	92.35
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.34
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	92.34
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.33
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.2
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	92.16
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.13
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	92.1
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.07
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.07
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.06
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.06
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.92
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	91.92
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.92
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	91.89
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	91.87
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.87
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.84
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	91.81
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	91.8
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	91.73
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	91.63
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	91.43
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.34
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.33
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	91.32
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.27
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	91.25
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	90.58
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.18
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	91.13
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.11
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.11
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	91.1
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	90.97
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	90.89
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.88
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	90.87
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	90.85
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.84
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.82
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.81
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	90.78
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	90.74
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.63
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	90.54
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.41
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	90.4
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	90.38
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	90.37
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	90.36

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=100.00  E-value=6.8e-46  Score=347.49  Aligned_cols=372  Identities=33%  Similarity=0.554  Sum_probs=288.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC-ccccchHHHHHHHHHHHHHhcCCe
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      ++||+|||||++|+++|++|+++|++|+|||+...++..+++..+.+.++..+.. ..+.++...+.+.|+++.+..+.+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   82 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHK   82 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCCc
Confidence            5899999999999999999999999999999988775446666666666655433 256677888899999998887776


Q ss_pred             eEeeeeeeeeCCC-ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .+...+.+.+... +...+....+.+...+++.+.++.+++.+.+|. +.......+++.+.+++++|.++++.|.+.++
T Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (389)
T 2gf3_A           83 IFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (389)
T ss_dssp             CEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTT-CCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             ceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCC-cccCCCceEEEeCCCcEEeHHHHHHHHHHHHH
Confidence            6666666655433 444456666677778888889999999888887 65566778899999999999999999999999


Q ss_pred             HcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCCc
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDE  244 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~~  244 (413)
                      +.|++++++++|++|..  +  ++.+.+++++| +++||.||+|+|.|+..+++.+ +..+|+.|.+++++.++....  
T Consensus       162 ~~Gv~i~~~~~v~~i~~--~--~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~-g~~~pl~~~rg~~~~~~~~~~--  233 (389)
T 2gf3_A          162 ARGAKVLTHTRVEDFDI--S--PDSVKIETANG-SYTADKLIVSMGAWNSKLLSKL-NLDIPLQPYRQVVGFFESDES--  233 (389)
T ss_dssp             HTTCEEECSCCEEEEEE--C--SSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGG-TEECCCEEEEEEEEEECCCHH--
T ss_pred             HCCCEEEcCcEEEEEEe--c--CCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhh-ccCCceEEEEEEEEEEecCcc--
Confidence            99999999999999998  6  34577888777 4999999999999999888876 767899999999998864320  


Q ss_pred             cccccCCCCceEEec-CCCeeEecCCCCCCCeEEEEe-CCCCcCCCCCCCCCC---CcchHHHHHHHHhhcCCCCCCCCC
Q 015072          245 ADYAVGGDFPSFASY-GDPHVYGTPSLEYPGLIKIAL-HRGYLCDPDRRPWGP---GPLLDSLKELIQGRFAGRVDSSGP  319 (413)
Q Consensus       245 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~-~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~p~~~~~~~~  319 (413)
                       .+.....+|.+... .+..+|++|..+.. .+.++. ..+...+++..+...   .+..+.+.+.+.+++|.+.+  .+
T Consensus       234 -~~~~~~~~p~~~~~~~~~~~y~~p~~~g~-~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~--~~  309 (389)
T 2gf3_A          234 -KYSNDIDFPGFMVEVPNGIYYGFPSFGGC-GLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANG--EL  309 (389)
T ss_dssp             -HHBGGGTCCEEEEEETTEEEEEECBSTTC-CEEEEESSCCEECCTTTCCCCTTSSHHHHHHHHHHHHHHCGGGCS--CE
T ss_pred             -cccccccCCEEEEeCCCCcEEEcCCCCCC-cEEEEEcCCCCccCcccccCccCCCHHHHHHHHHHHHHhCCCCCC--Cc
Confidence             11000124554432 22368888876522 344443 222222333222222   22678999999999999874  46


Q ss_pred             ceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccCCC
Q 015072          320 AATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKEN  394 (413)
Q Consensus       320 ~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~  394 (413)
                      ...|+|+|++|+|+.|+||++|..  +|+|+++||+|+|+++||++|+++|++|+++.+ +.+++.|+|+||...
T Consensus       310 ~~~w~g~r~~t~D~~p~ig~~~~~--~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~~~-~~~~~~~~~~Rf~~~  381 (389)
T 2gf3_A          310 KRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKT-EHDISIFSINRPALK  381 (389)
T ss_dssp             EEEEEEEEEECTTSCCEEEEETTE--EEEEEEECCTTCCGGGHHHHHHHHHHHHHHSCC-SSCCGGGCTTCGGGT
T ss_pred             eEEEEEEeccCCCCCeEEccCCCC--CCEEEEECCccccccccHHHHHHHHHHHcCCCC-CCCcccccccccccc
Confidence            788999999999999999999877  899999999999999999999999999995544 667899999999754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=100.00  E-value=9.9e-46  Score=345.45  Aligned_cols=363  Identities=17%  Similarity=0.193  Sum_probs=279.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC-
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY-   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   84 (413)
                      +++||+|||||++|+++|++|+ +|++|+|+|+.+..+ .+++..+.|.++..+....+.++...+.+.|.++.+.++. 
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g-~~as~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPG-YHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFCEH   85 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTT-SSGGGSCCCEECSSSSCHHHHHHHHHHHHHHHSCCTTSCSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCcc-ccccccccceeecccCCHHHHHHHHHHHHHHHHhhhhhCCc
Confidence            4689999999999999999999 699999999986553 3566667778877777666677777888888877655432 


Q ss_pred             eeEeeeeeeeeCCC-ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      ..+...+.+..... ....+....+.++..+++.+.++.+++.+.+|. +.......+++.+.++.++|..+++.|.+.+
T Consensus        86 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a  164 (381)
T 3nyc_A           86 PLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPV-LRRDKVFGATYDPTGADIDTDALHQGYLRGI  164 (381)
T ss_dssp             CSEEECCEEEECSSCCHHHHHHHHHHHHHHCTTCEEECHHHHHHHSTT-BCGGGCCCEEEETTCEEECHHHHHHHHHHHH
T ss_pred             ccccccceEEEechHHHHHHHHHHHHHHHcCCCcEEeCHHHHHHhCCC-cccccceEEEEcCCCceECHHHHHHHHHHHH
Confidence            23556666665443 344556666777778888999999999999987 5544456789999999999999999999999


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC-cceeEEEEEEEEEEecCC
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE-LPIQAVETSVCYWRIKEG  242 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~-~p~~~~~~~~~~~~~~~~  242 (413)
                      ++.|++++++++|++|..  +  ++.+.|++.+| +++||+||+|+|+|+..+.+.+ +.. +|+.|.+++++.++.++.
T Consensus       165 ~~~Gv~i~~~~~V~~i~~--~--~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~-g~~~~~~~p~rg~~~~~~~~~~  238 (381)
T 3nyc_A          165 RRNQGQVLCNHEALEIRR--V--DGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLA-GVRPLGLQPKRRSAFIFAPPPG  238 (381)
T ss_dssp             HHTTCEEESSCCCCEEEE--E--TTEEEEECSSE-EEEESEEEECCGGGHHHHHHHH-TCCCCCCEEEEEEEEEECCCTT
T ss_pred             HHCCCEEEcCCEEEEEEE--e--CCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHh-CCCCCceeeeEEEEEEECCCcC
Confidence            999999999999999998  7  34588988888 5999999999999999998887 765 799999999988764432


Q ss_pred             CccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCC-cchHHHHHHHHhhcCCCCCCCCCce
Q 015072          243 DEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPG-PLLDSLKELIQGRFAGRVDSSGPAA  321 (413)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~p~~~~~~~~~~  321 (413)
                      ..    . ..+|.+...+ ..+|++|..   |.+.++.......++.  +..++ ..++.+.+.+.+ +|.+.+. .+..
T Consensus       239 ~~----~-~~~p~~~~~~-~~~y~~p~~---g~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~l~~~-~~~~  305 (381)
T 3nyc_A          239 ID----C-HDWPMLVSLD-ESFYLKPDA---GMLLGSPANADPVEAH--DVQPEQLDIATGMYLIEE-ATTLTIR-RPEH  305 (381)
T ss_dssp             CC----C-TTCCEEEETT-SSCEEEEET---TEEEEECCCCEECCSS--CCCCCHHHHHHHHHHHHH-HBSCCCC-CCSE
T ss_pred             CC----c-CccceEEeCC-CCEEEEeCC---CcEEEeCCcCCCCCcc--cCCCChHHHHHHHHHHHh-cCCCccc-ceee
Confidence            11    1 2256555443 457888874   4444444322211111  11111 145677777765 5666653 5778


Q ss_pred             eeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCc------cccccccccccC
Q 015072          322 TQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQG------VELRHFRIARFK  392 (413)
Q Consensus       322 ~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~------~~~~~~~~~R~~  392 (413)
                      .|+|+||+|+|+.|+||++|..  +|+|+++||+|+|+++||++|+++|++|+++.++.      .+++.|+|+||.
T Consensus       306 ~w~G~r~~t~D~~p~ig~~~~~--~~l~~a~G~~g~G~~~ap~~g~~la~~i~g~~~~~~~~~~~~d~~~~~~~Rf~  380 (381)
T 3nyc_A          306 TWAGLRSFVADGDLVAGYAANA--EGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAMLSPRRLS  380 (381)
T ss_dssp             EEEEEEEECTTSCCEEEECTTS--TTEEEEECCTTCTTTTHHHHHHHHHHHHTTCCCCHHHHTTTCCHHHHCGGGGC
T ss_pred             eeEEccccCCCCCceecCCCCC--CCeEEEEcCCChhHhhCHHHHHHHHHHHhCCCCCcccccccCcccccCccccC
Confidence            9999999999999999999987  99999999999999999999999999999555532      578999999995

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.2e-45  Score=340.56  Aligned_cols=372  Identities=23%  Similarity=0.300  Sum_probs=284.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      |..++||+|||||++|+++|++|+++|++|+|||+...+  .++|..+.+.++..+......++...+.+.|+++.+..+
T Consensus         2 m~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~~--~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~   79 (382)
T 1y56_B            2 LPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIG--SGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYG   79 (382)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT--CSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC--CCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhC
Confidence            445799999999999999999999999999999998654  355666667777666655556777888889999888776


Q ss_pred             CeeEeeeeeeeeCCC--ChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      . .+...+.+.....  ..+.+....+.+...+.+.+.++.+++.+.+|. +.......+++.+.++.++|..+++.|.+
T Consensus        80 ~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  157 (382)
T 1y56_B           80 F-SFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPL-LDISEVIAASWNPTDGKADPFEATTAFAV  157 (382)
T ss_dssp             C-CEECCCEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTT-CCCTTCCEEEEETTCCEECHHHHHHHHHH
T ss_pred             C-CeeccceEEEEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCC-CCcccceEEEEcCCCeeECHHHHHHHHHH
Confidence            6 3445555554332  223445556667778888899999999888887 54455667889999999999999999999


Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC--cceeEEEEEEEEEE
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE--LPIQAVETSVCYWR  238 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~--~p~~~~~~~~~~~~  238 (413)
                      .+++.|++++++++|++|..  +  ++.+. |++.+| +++||.||+|+|.|+..+.+.+ +..  +|+.+.+++++.++
T Consensus       158 ~~~~~Gv~i~~~~~v~~i~~--~--~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~-g~~~~~~~~~~~g~~~~~~  231 (382)
T 1y56_B          158 KAKEYGAKLLEYTEVKGFLI--E--NNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMA-GIKTKIPIEPYKHQAVITQ  231 (382)
T ss_dssp             HHHHTTCEEECSCCEEEEEE--S--SSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHH-TCCSCCCCEEEEEEEEEEC
T ss_pred             HHHHCCCEEECCceEEEEEE--E--CCEEEEEEECCc-EEECCEEEECcchhHHHHHHHc-CCCcCcCCCeeEeEEEEEc
Confidence            99999999999999999998  6  34555 888888 5999999999999998887776 777  89999999988775


Q ss_pred             ecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCC
Q 015072          239 IKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSG  318 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~  318 (413)
                      ....    ..   ..+.+.......+|++|..+  |++.++......  .........+..+.+.+.+.+++|.+.+. .
T Consensus       232 ~~~~----~~---~~~~~~~~~~~~~y~~p~~~--g~~iG~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~p~l~~~-~  299 (382)
T 1y56_B          232 PIKR----GT---INPMVISFKYGHAYLTQTFH--GGIIGGIGYEIG--PTYDLTPTYEFLREVSYYFTKIIPALKNL-L  299 (382)
T ss_dssp             CCST----TS---SCSEEEESTTTTEEEECCSS--SCCEEECSCCBS--SCCCCCCCHHHHHHHHHHHHHHCGGGGGS-E
T ss_pred             cCCc----cc---CCCeEEecCCCeEEEEEeCC--eEEEecCCCCCC--CCCCCCCCHHHHHHHHHHHHHhCCCcCCC-C
Confidence            2221    10   12444433324689999765  544442211110  01011111226788899999999998763 5


Q ss_pred             CceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccCCCCCCC
Q 015072          319 PAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGN  398 (413)
Q Consensus       319 ~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~~~~~  398 (413)
                      +...|+|+||+|+|+.|+||++|..  +|+|+++||+|+|+++||++|+++|++|+++.+ ..+++.|+|+||...++.+
T Consensus       300 ~~~~~~g~r~~t~d~~p~ig~~~~~--~~~~~~~G~~g~G~~~a~~~g~~la~~i~~~~~-~~~~~~~~~~Rf~~~~~~~  376 (382)
T 1y56_B          300 ILRTWAGYYAKTPDSNPAIGRIEEL--NDYYIAAGFSGHGFMMAPAVGEMVAELITKGKT-KLPVEWYDPYRFERGELRT  376 (382)
T ss_dssp             EEEEEEEEEEECTTSCCEEEEESSS--BTEEEEECCTTCHHHHHHHHHHHHHHHHHHSSC-SSCGGGGCGGGTTTTCCC-
T ss_pred             ceEEEEeccccCCCCCcEeccCCCC--CCEEEEEecCcchHhhhHHHHHHHHHHHhCCCC-cCcccccCHhhhccCCCCC
Confidence            6778999999999999999999977  999999999999999999999999999995544 5688999999998877655


Q ss_pred             cc
Q 015072          399 VK  400 (413)
Q Consensus       399 ~~  400 (413)
                      ++
T Consensus       377 ~~  378 (382)
T 1y56_B          377 AA  378 (382)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=100.00  E-value=3.6e-44  Score=336.49  Aligned_cols=368  Identities=23%  Similarity=0.411  Sum_probs=280.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|++|+++|++|+|||+....+..+++..+.+.++..+....+.++...+...|.++.+..+.+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCERR   82 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhCcc
Confidence            35899999999999999999999999999999988765345666566666555554445566777888899888877766


Q ss_pred             eEeeeeeeeeCCCCh----HHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSEN----KSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      ++...+.+.....+.    +.+....+.+...+++.+.++..++.+.+|. +.......+++.+.++.++|..+++.|.+
T Consensus        83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  161 (397)
T 2oln_A           83 LIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGF-RGLPRDYEGFLQPDGGTIDVRGTLAALFT  161 (397)
T ss_dssp             CEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCC-CSCCTTCEEEEETTCEEEEHHHHHHHHHH
T ss_pred             HHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcC-ccCCCceeEEEcCCCCEEcHHHHHHHHHH
Confidence            666666665543322    4456666777778888888898888888887 55556678899999999999999999999


Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecC
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKE  241 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~  241 (413)
                      .+++.|++++++++|++|..  +  ++.+.|++++++ ++||.||+|+|+|+..+++.+ +..+|+.+.++++++++...
T Consensus       162 ~a~~~Gv~i~~~~~V~~i~~--~--~~~v~v~t~~g~-i~a~~VV~A~G~~s~~l~~~~-g~~~p~~~~~~~~~~~~~~~  235 (397)
T 2oln_A          162 LAQAAGATLRAGETVTELVP--D--ADGVSVTTDRGT-YRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT  235 (397)
T ss_dssp             HHHHTTCEEEESCCEEEEEE--E--TTEEEEEESSCE-EEEEEEEECCGGGHHHHHGGG-TCCCCEEEEEEEEEEEEBCS
T ss_pred             HHHHcCCEEECCCEEEEEEE--c--CCeEEEEECCCE-EEcCEEEEcCCcChHHHhhhc-CCCCCeeEEEEEEEEEeecC
Confidence            99999999999999999998  6  346778877764 999999999999998888877 77899999999999887443


Q ss_pred             CCccccccCCCCceEEecC-CC-----eeEecCCCCCC--CeEEEEeCC--CCcCCCCCCCCCCC-cchHHHHHHHHhhc
Q 015072          242 GDEADYAVGGDFPSFASYG-DP-----HVYGTPSLEYP--GLIKIALHR--GYLCDPDRRPWGPG-PLLDSLKELIQGRF  310 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~-~~-----~~~~~p~~~~~--g~~~~~~~~--~~~~~~~~~~~~~~-~~~~~l~~~~~~~~  310 (413)
                      .   .+    .+|.+.... +.     .+|++|..+..  +.+.++.+.  +...+++..+.... +..+.+.+.+.++|
T Consensus       236 ~---~~----~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  308 (397)
T 2oln_A          236 P---VT----EAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQMDRLSGWLRDHL  308 (397)
T ss_dssp             C---CS----CCCEEEEECCCCSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSSGGGCCSSCCHHHHHHHHHHHHHHC
T ss_pred             c---cc----CCCEEEEecCCCCcccceEEECCCCCCCCCceEEEEecCCCCCcCCCccccCCCCHHHHHHHHHHHHHhC
Confidence            1   11    245444322 21     58998876532  145555432  22223322222222 26788999999999


Q ss_pred             CCCCCCCCCceeeeeeee--ccCCCCeEEecCCC----CCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccc
Q 015072          311 AGRVDSSGPAATQLCMYS--MTPDKDFVIDFLGG----ELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELR  384 (413)
Q Consensus       311 p~~~~~~~~~~~~~g~~~--~t~d~~p~ig~~~~----~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~  384 (413)
                      |.+.+  .+...|+|+++  +|+|+.|+||++|.    .  +|+|+++|  |+|+++||++|+++|++|+++.+ ..+++
T Consensus       309 p~l~~--~~~~~~~g~~~~p~t~D~~p~ig~~~~~~~~~--~~l~~a~G--g~G~~~ap~~g~~la~~i~~~~~-~~~~~  381 (397)
T 2oln_A          309 PTVDP--DPVRTSTCLAVLPTDPERQFFLGTARDLMTHG--EKLVVYGA--GWAFKFVPLFGRICADLAVEDST-AYDIS  381 (397)
T ss_dssp             TTBCS--SCSEEEEEEEEEESSTTCCCEEEESTTTSTTG--GGEEEEEE--SSCGGGHHHHHHHHHHHHHHSCC-SSCCG
T ss_pred             CCCCC--CceeEEEEEecCCcCCCCCeEeecCCccccCC--CCEEEEeC--cchhhccHHHHHHHHHHHhCCCC-CCCcc
Confidence            99874  46788999988  99999999999986    6  89999999  78999999999999999995554 67899


Q ss_pred             cccccccCCC
Q 015072          385 HFRIARFKEN  394 (413)
Q Consensus       385 ~~~~~R~~~~  394 (413)
                      .|+++||...
T Consensus       382 ~f~~~Rf~~~  391 (397)
T 2oln_A          382 RLAPQSALLE  391 (397)
T ss_dssp             GGSCCC----
T ss_pred             ccccChhhhh
Confidence            9999999653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=100.00  E-value=9.1e-45  Score=337.76  Aligned_cols=362  Identities=29%  Similarity=0.581  Sum_probs=278.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC-ccccchHHHHHHHHHHHHHhcCC-
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESSLLWEQAQSEIGY-   84 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-   84 (413)
                      ++||+|||||++|+++|++|+++|++|+|||+....++.+++++..+.++..+.. ..+..+...+.+.|+++. ..++ 
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~   80 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELS-RHNED   80 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHH-TTCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHH-HhCCC
Confidence            4899999999999999999999999999999998776555555555555543432 345677788889999888 6665 


Q ss_pred             -eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           85 -KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                       ..+...+.+.+...+.+.+....+.++..+.+.+.++.+++.+.+|. +..+....+++.+.+++++|..+++.|.+.+
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  159 (372)
T 2uzz_A           81 DPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPE-IRVPDNYIGLFETDSGFLRSELAIKTWIQLA  159 (372)
T ss_dssp             SCSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTT-CCCCTTEEEEEESSCEEEEHHHHHHHHHHHH
T ss_pred             ccceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCC-ccCCCCceEEEeCCCcEEcHHHHHHHHHHHH
Confidence             34556666655544445566667777888999999999999999987 6556677899999999999999999999999


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCC
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGD  243 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~  243 (413)
                      ++.|++++++++|++|..  +  ++.+.+++.+|+ ++||.||+|+|+|+..+++.     +|+.|.++++++++.+.. 
T Consensus       160 ~~~G~~i~~~~~V~~i~~--~--~~~~~v~~~~g~-~~a~~vV~a~G~~s~~l~~~-----l~~~p~rg~~~~~~~~~~-  228 (372)
T 2uzz_A          160 KEAGCAQLFNCPVTAIRH--D--DDGVTIETADGE-YQAKKAIVCAGTWVKDLLPE-----LPVQPVRKVFAWYQADGR-  228 (372)
T ss_dssp             HHTTCEEECSCCEEEEEE--C--SSSEEEEESSCE-EEEEEEEECCGGGGGGTSTT-----CCCEEEECCEEEECCCGG-
T ss_pred             HHCCCEEEcCCEEEEEEE--c--CCEEEEEECCCe-EEcCEEEEcCCccHHhhccc-----cCceEEEEEEEEEEeccc-
Confidence            999999999999999998  6  345788888886 99999999999999877663     589999999888764321 


Q ss_pred             ccccccCCCCceEEec--CCCeeEecCCCCCCCeEEEEeCC-CCcCCC--CCCCCCC-CcchHHHHHHHHhhcCCCCCCC
Q 015072          244 EADYAVGGDFPSFASY--GDPHVYGTPSLEYPGLIKIALHR-GYLCDP--DRRPWGP-GPLLDSLKELIQGRFAGRVDSS  317 (413)
Q Consensus       244 ~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~g~~~~~~~~-~~~~~~--~~~~~~~-~~~~~~l~~~~~~~~p~~~~~~  317 (413)
                         +.....+|.+...  ....+|++|..+  +.++++.+. +...++  +..+... .+..+.+.+.+.+++|.+.+  
T Consensus       229 ---~~~~~~~p~~~~~~~~~~~~y~~p~~~--~~~~iG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~--  301 (372)
T 2uzz_A          229 ---YSVKNKFPAFTGELPNGDQYYGFPAEN--DALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVLPGIGC--  301 (372)
T ss_dssp             ---GSTTTTCCEEEEECTTCCEEEEECCSS--SCEEEEESSCCEECCSGGGCCCTTTSTTGGGSSHHHHHHHSCSCCC--
T ss_pred             ---cCccccCCEEEEecCCCCeEEecCCCC--CeEEEEecCCCCccCChhhccCCCCCHHHHHHHHHHHHHHCCCCCc--
Confidence               1111124544322  224578888754  445554422 111111  1111111 12677788999999999873  


Q ss_pred             CCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccC
Q 015072          318 GPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFK  392 (413)
Q Consensus       318 ~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~  392 (413)
                       ....|+|+||+|+|+.|+||++|..  +|+|+++||+|+|+++||++|+++|++|+++ ..+.+++.|+|+||.
T Consensus       302 -~~~~~~g~r~~t~d~~p~ig~~~~~--~~l~~~~G~~g~G~~~ap~~g~~la~~i~~~-~~~~~~~~~~~~Rf~  372 (372)
T 2uzz_A          302 -CLYGAACTYDNSPDEDFIIDTLPGH--DNTLLITGLSGHGFKFASVLGEIAADFAQDK-KSDFDLTPFRLSRFQ  372 (372)
T ss_dssp             -EEEECCCEEEECTTSCCCEEEETTE--EEEEEECCCCSCCGGGHHHHHHHHHHHHTTC-CCSSCCGGGCSTTCC
T ss_pred             -cceeeEEeeccCCCCCeEEecCCCC--CCEEEEeCCCccchhccHHHHHHHHHHHhCC-CCCCCccccCcCCCC
Confidence             5678999999999999999999977  8999999999999999999999999999954 446788999999984

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=100.00  E-value=1e-41  Score=320.91  Aligned_cols=371  Identities=21%  Similarity=0.207  Sum_probs=283.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHH-cC-CcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAK-RG-QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~-~g-~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||||++|+++|++|++ +| ++|+|||+...+  .++|..+.+.++..+.......+...+.+.|.++.+..+
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~--~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   97 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA--GGNMARNTTIIRSNYLWDESAGIYEKSLKLWEQLPEDLE   97 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTT--CSGGGTSCCCBCCCCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCC--CCcccccCceeeecCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999 99 999999998854  356666777777766665566777788889999988877


Q ss_pred             Cee-EeeeeeeeeCCCC--hHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccC-----CCCeEEEEecCCeeecHHHH
Q 015072           84 YKV-YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEI-----PENWVGVTTELGGVIKPTKA  155 (413)
Q Consensus        84 ~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~  155 (413)
                      .++ +...+.+......  .+.+....+.+...+.++++++.+++.+.+|. +..     .....+++.+.+++++|..+
T Consensus        98 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (405)
T 2gag_B           98 YDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPI-INTSDDIRYPVMGATWQPRAGIAKHDHV  176 (405)
T ss_dssp             CCCCCBCCCEEEEECSHHHHHHHHHHHHHHHTBTCCCEEECHHHHHHHCTT-SCCSTTSSSCCCEEEEETTCBBCCHHHH
T ss_pred             CCcCEecccEEEEEcCHHHHHHHHHHHHHHHhcCCCceEeCHHHHHhhCCC-CcccccccccceeEEEeCCCccCCHHHH
Confidence            765 3444555543322  23445566667778888899999999888887 543     35567899999999999999


Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEE
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVC  235 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~  235 (413)
                      ++.|.+.+++.|++++++++|++|..  ++ +..+.|++.+|+ +.||.||+|+|+|+..+.+.+ +..+|+.+.+++++
T Consensus       177 ~~~l~~~~~~~g~~i~~~~~v~~i~~--~~-~~~~~v~~~~g~-~~a~~vV~a~G~~s~~l~~~~-g~~~~~~~~~~~~~  251 (405)
T 2gag_B          177 AWAFARKANEMGVDIIQNCEVTGFIK--DG-EKVTGVKTTRGT-IHAGKVALAGAGHSSVLAEMA-GFELPIQSHPLQAL  251 (405)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEE--SS-SBEEEEEETTCC-EEEEEEEECCGGGHHHHHHHH-TCCCCEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEE--eC-CEEEEEEeCCce-EECCEEEECCchhHHHHHHHc-CCCCCccccceeEE
Confidence            99999999999999999999999998  63 244678888884 999999999999998887766 88899999999988


Q ss_pred             EEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCC
Q 015072          236 YWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVD  315 (413)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~  315 (413)
                      ..+.....   +     .+.+.. .+..+|++|..+  |.+.++.........+  .....+..+.+.+.+.+++|.+.+
T Consensus       252 ~~~~~~~~---~-----~~~~~~-~~~~~y~~p~~~--g~~~ig~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~p~l~~  318 (405)
T 2gag_B          252 VSELFEPV---H-----PTVVMS-NHIHVYVSQAHK--GELVMGAGIDSYNGYG--QRGAFHVIQEQMAAAVELFPIFAR  318 (405)
T ss_dssp             EEEEBCSC---C-----CSEEEE-TTTTEEEEECTT--SEEEEEEEECSSCCCS--SCCCTHHHHHHHHHHHHHCGGGGG
T ss_pred             EecCCccc---c-----CceEEe-CCCcEEEEEcCC--CcEEEEeccCCCCccc--cCCCHHHHHHHHHHHHHhCCcccc
Confidence            76522110   0     122222 234578888643  5444443221111111  111223788899999999999875


Q ss_pred             CCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccCCCC
Q 015072          316 SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENP  395 (413)
Q Consensus       316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~~  395 (413)
                      . .+...|+|+|++++|+.|+||++| .  +|+|+++|++|+|+++||.+|+++|++|.++.+ ..+++.|+++||...+
T Consensus       319 ~-~~~~~w~g~~~~t~d~~p~ig~~~-~--~~l~~~~G~~g~G~~~a~~~g~~la~~i~g~~~-~~~~~~~~~~R~~~~~  393 (405)
T 2gag_B          319 A-HVLRTWGGIVDTTMDASPIISKTP-I--QNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEP-HELNKPFSLERFETGH  393 (405)
T ss_dssp             C-EECEEEEEEEEEETTSCCEEEECS-S--BTEEEEECCGGGCSTTHHHHHHHHHHHHHHTSC-CTTTTTSCSTHHHHTC
T ss_pred             C-CcceEEeeccccCCCCCCEecccC-C--CCEEEEecCCCchhhHHHHHHHHHHHHHhCCCC-CccccccCcchhcCCc
Confidence            3 466789999999999999999988 4  899999999999999999999999999995554 5589999999998877


Q ss_pred             CCCcccc
Q 015072          396 KGNVKDY  402 (413)
Q Consensus       396 ~~~~~~~  402 (413)
                      ..++...
T Consensus       394 ~~~~~~~  400 (405)
T 2gag_B          394 LIDEHGA  400 (405)
T ss_dssp             CCCCTTT
T ss_pred             cccCccc
Confidence            6665543

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=100.00  E-value=1.7e-41  Score=323.16  Aligned_cols=369  Identities=20%  Similarity=0.223  Sum_probs=267.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcc-cCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQ-FDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||||++|+++|++|+++| ++|+|||+ ....  .++|..+.+.++..+.......+...+.+.|.++.+. +
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~--~g~S~~~~g~i~~~~~~~~~~~l~~~~~~~~~~l~~~-g   98 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG--SGDSGRSMAAFRTFFSSTMNRLVAGSTVRLFEDAQRG-G   98 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTT--CSGGGSSCCEEECCCSSHHHHHHHHHHHHHHHHHHHT-T
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCC--CCcccCCCcEecccCCCHHHHHHHHHHHHHHHHHHhc-C
Confidence            4689999999999999999999999 99999999 5443  3566777788887776655667778888889988776 6


Q ss_pred             Cee-EeeeeeeeeCCCC-hHHHHHHHHHHHhCCCCc-----ccc-----------CHHHHHHhcCCcccCCCCeEEEEec
Q 015072           84 YKV-YFKAHQFDMGPSE-NKSLRSVIASCRKNSVPH-----QVL-----------DCRQVLQKYSGRIEIPENWVGVTTE  145 (413)
Q Consensus        84 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~-----~~l-----------~~~~~~~~~p~~~~~~~~~~~~~~~  145 (413)
                      .++ +...+.+...... ...+....+.+...+.+.     +++           +.+++.. ..    ......+++.+
T Consensus        99 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~l~~~g~~~~~~~~~~~~~~-~~----~~~~~~~~~~~  173 (448)
T 3axb_A           99 EDLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAEV-LG----VGDVEGAVLIR  173 (448)
T ss_dssp             CCCCCBCCCEEEEECHHHHHHHHHHHTTSCCBTTTEEEECHHHHHHHHCCCCCCTTSSHHHH-HT----CCCCCEEEEES
T ss_pred             cccccccCCEEEEcCHHHHHHHHHHHHHHHhhCCCccccchhhhhhcccccccCCCHHHHHh-cc----CCCceEEEEeC
Confidence            554 3344444421111 122222333334456555     556           6666655 22    24456678888


Q ss_pred             CCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeec--------------cCCCcEEEEeCCccEE--EeCeEEEcC
Q 015072          146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKD--------------DVRGGVTVVTSSGEEF--WGKKCVVTA  209 (413)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~--------------~~~~~~~v~~~~g~~i--~ad~vV~A~  209 (413)
                      .++.+++.++++.|.+.+++.|++++++++|++|..  +              +++..+.|.+.+|+ +  .||.||+|+
T Consensus       174 ~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~~~~~~~~~~~~~~v~~V~t~~g~-i~~~Ad~VV~At  250 (448)
T 3axb_A          174 SAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVEL--KPRVELGIEGEPLPWQEARASAAVLSDGT-RVEVGEKLVVAA  250 (448)
T ss_dssp             SEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEE--EESSCCCCTTSSCTTSCEEEEEEEETTSC-EEEEEEEEEECC
T ss_pred             CCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEe--cccccccccccccccCCCceEEEEeCCCE-EeecCCEEEECC
Confidence            899999999999999999999999999999999976  3              22233467788885 8  999999999


Q ss_pred             CcChhhhhhhhcCCCcceeEEEEEEEEEEecCC-Ccc-----ccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCC
Q 015072          210 GAWVGKLVKKISGLELPIQAVETSVCYWRIKEG-DEA-----DYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRG  283 (413)
Q Consensus       210 G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~  283 (413)
                      |+|+..+++.+ +..+|+.|.+++++.++.... ...     .+.....+|.+...  ..+|++|..+. |.++++.+..
T Consensus       251 G~~s~~l~~~~-g~~~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~y~~p~~~~-g~~~iG~~~~  326 (448)
T 3axb_A          251 GVWSNRLLNPL-GIDTFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILP--KRVLVRPAPRE-GSFWVQLSDN  326 (448)
T ss_dssp             GGGHHHHHGGG-TCCCSEEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEET--TTEEEEEETTT-TEEEEEECCC
T ss_pred             CcCHHHHHHHc-CCCCcccccceEEEEeCCcccccccccccccccccCCCceEEcC--CceEEeecCCC-CeEEEecCCc
Confidence            99999898877 788999999999998874331 110     01111224555443  45888887531 4444444322


Q ss_pred             CcCCCCCCCC--CC-Ccc-hHHHHHHHHhhcCCCCCCCCCceeeeeeeec-cCCCCeEEecCCCCCCCCEEEEeCCCccc
Q 015072          284 YLCDPDRRPW--GP-GPL-LDSLKELIQGRFAGRVDSSGPAATQLCMYSM-TPDKDFVIDFLGGELGEDVVVAGGFSGHG  358 (413)
Q Consensus       284 ~~~~~~~~~~--~~-~~~-~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~-t~d~~p~ig~~~~~~~~~~~~~~G~~~~G  358 (413)
                      .. ++...+.  .. .+. .+.+.+.+.+++|.+.+. .+...|+|+||+ |+|+.|+||+++    +|+|+++|++|+|
T Consensus       327 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~-~~~~~w~G~r~~~t~d~~p~ig~~~----~~l~~a~G~~g~G  400 (448)
T 3axb_A          327 LG-RPFALEEDPQPEEHYYSLAILPILSLYLPQFQDA-YPSGGWAGHYDISFDANPVVFEPWE----SGIVVAAGTSGSG  400 (448)
T ss_dssp             TT-SCBCCCSSCCCCHHHHHHHTHHHHHHHCGGGTTC-CCSEEEEEEEEEETTSSCEEECGGG----CSEEEEECCTTCC
T ss_pred             cc-CCcccccccCCChHHHHHHHHHHHHHhCcCcccC-CcccceEEEeccccCCCCcEeeecC----CCEEEEECCCchh
Confidence            11 1111111  11 225 788999999999998863 567899999999 999999999987    7999999999999


Q ss_pred             cccchHHHHHHHHHHHcCCCC------cccccccc-ccc-cCCCC
Q 015072          359 FKMAPVVGRILADLVLSGEAQ------GVELRHFR-IAR-FKENP  395 (413)
Q Consensus       359 ~~~a~~~a~~~a~~i~~~~~~------~~~~~~~~-~~R-~~~~~  395 (413)
                      +++||++|+++|++|+++...      ..+++.|+ |+| |...+
T Consensus       401 ~~~ap~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~R~f~~~~  445 (448)
T 3axb_A          401 IMKSDSIGRVAAAVALGMESVELYGGVEMPVKWMGLEGRRYEQER  445 (448)
T ss_dssp             GGGHHHHHHHHHHHHTTCSEEECTTSCEEEGGGGSSTTCCCCCCS
T ss_pred             HhHhHHHHHHHHHHHcCCCcccccccceecHhHcCccccccccCC
Confidence            999999999999999955542      16789999 999 87643

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=100.00  E-value=1.3e-40  Score=316.18  Aligned_cols=368  Identities=19%  Similarity=0.245  Sum_probs=261.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCCCCCcceecccCCcccc------chHHHHHHHHH
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH------PMVLESSLLWE   76 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~------~~~~~~~~~~~   76 (413)
                      |..++||+|||||++|+++|++|+++|+ +|+|||+....++.+++......+...+....+.      .+...+...|.
T Consensus         3 ~~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   82 (438)
T 3dje_A            3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEAFNGWK   82 (438)
T ss_dssp             CCTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTCTTCSSCEEECCCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCccCCCCccEEEeccCCchhhhcchhHHHHHHHHHHHh
Confidence            4457999999999999999999999999 9999999988765555444444555555554455      66667777776


Q ss_pred             HHHHhcCCeeEeeeeeeeeCCCChHHHHHHHHHHH-hCCCCc-cccCHHHHHHhcCCcccCCCCeE--EEEecCC-eeec
Q 015072           77 QAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCR-KNSVPH-QVLDCRQVLQKYSGRIEIPENWV--GVTTELG-GVIK  151 (413)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~l~~~~~~~~~p~~~~~~~~~~--~~~~~~~-~~~~  151 (413)
                      .+.  .....+...+.+..... ...+..+..... ..+... ++++.+++.+.+|..+.......  +++.+.+ +.++
T Consensus        83 ~~~--~~~~~~~~~g~l~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~~g~~~  159 (438)
T 3dje_A           83 NDP--LFKPYYHDTGLLMSACS-QEGLDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAH  159 (438)
T ss_dssp             HCT--TTGGGEECCCEEEEECS-HHHHHHHHHHHCGGGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEEEC
T ss_pred             hCc--cccCcEeccceEEEecC-cchHHHHHHHHhhcccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCCCEEec
Confidence            542  11122444555544332 222222222222 345555 77888888887773011122233  8889999 9999


Q ss_pred             HHHHHHHHHHHHHHcCCeEecCc---eEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcce
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNT---EVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPI  227 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~---~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~  227 (413)
                      +..+++.|.+.+++.|++|++++   +|++|..  +  ++.+. |++.+|++++||.||+|+|+|+..+++ +   ..++
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~--~--~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~~-l---~~~~  231 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF--E--NNDVKGAVTADGKIWRAERTFLCAGASAGQFLD-F---KNQL  231 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE--E--TTEEEEEEETTTEEEECSEEEECCGGGGGGTSC-C---TTCC
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe--c--CCeEEEEEECCCCEEECCEEEECCCCChhhhcC-c---ccce
Confidence            99999999999999999999999   9999998  6  34555 889999779999999999999988866 3   3467


Q ss_pred             eEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeC-CCCcC-----------CCCCCCCCC
Q 015072          228 QAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALH-RGYLC-----------DPDRRPWGP  295 (413)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~-~~~~~-----------~~~~~~~~~  295 (413)
                      .|.++++.++.+++.....+   ..+|++.... ..+|+.|..+ ++.++++.+ .+...           .|...+..+
T Consensus       232 ~p~~~~~~~~~l~~~~~~~~---~~~p~~~~~~-~~~~~~p~~~-~~~l~i~~~~~g~~~~~~~~~~~~~~~p~~~~~~~  306 (438)
T 3dje_A          232 RPTAWTLVHIALKPEERALY---KNIPVIFNIE-RGFFFEPDEE-RGEIKICDEHPGYTNMVQSADGTMMSIPFEKTQIP  306 (438)
T ss_dssp             EEEEEEEEEEECCGGGHHHH---TTCCEEEETT-TEEECSCCTT-TCEEEEEECCSCEECEEECTTCCEEECCCCCSSCB
T ss_pred             eeEEEEEEEEEcChHHhhhh---cCCCEEEECC-CceecCCCCC-CCeEEEEeCCCCccCCccCCCcccccCCcccccCC
Confidence            77777777776554321112   2366665443 4577666533 355655432 22221           011011112


Q ss_pred             CcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072          296 GPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS  375 (413)
Q Consensus       296 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~  375 (413)
                      .+..+.+.+.+.++||.+.+. .+...|+|+|++|||+.|+||++|..  +|+|+++||+|+|++++|++|+++|++|+ 
T Consensus       307 ~~~~~~l~~~~~~~~P~l~~~-~~~~~~~g~~~~t~D~~piig~~p~~--~~l~~a~G~~g~G~~~ap~~g~~la~~i~-  382 (438)
T 3dje_A          307 KEAETRVRALLKETMPQLADR-PFSFARICWCADTANREFLIDRHPQY--HSLVLGCGASGRGFKYLPSIGNLIVDAME-  382 (438)
T ss_dssp             HHHHHHHHHHHHHHCGGGTTC-CCSEEEEEEEEECTTSCCEEEECSSC--TTEEEEECCTTCCGGGTTTHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcccccC-CcceeeEEEeCcCCCCCeEEeecCCC--CCEEEEECCCCcchhhhHHHHHHHHHHHh-
Confidence            226788999999999999874 56789999999999999999999987  99999999999999999999999999998 


Q ss_pred             CCCCcccccccccccc
Q 015072          376 GEAQGVELRHFRIARF  391 (413)
Q Consensus       376 ~~~~~~~~~~~~~~R~  391 (413)
                      |...+.+.+.|+++|.
T Consensus       383 g~~~~~~~~~~~~~~~  398 (438)
T 3dje_A          383 GKVPQKIHELIKWNPD  398 (438)
T ss_dssp             TCCCHHHHHHHSCCHH
T ss_pred             CCCChhhccccCCCCc
Confidence            6654667788888774

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=100.00  E-value=1e-40  Score=332.31  Aligned_cols=365  Identities=15%  Similarity=0.127  Sum_probs=262.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc--ccchHHHHHHHHHHHHHhcCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      .+||+|||||++|+++|+.|+++|++|+|||+....+ .+++....|.+.+......  ..++...+.....++.+..+.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g-~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPA-LGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPV  350 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS-CSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCccc-ccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCC
Confidence            4899999999999999999999999999999976554 3556666666665443321  223332233333344444454


Q ss_pred             ee-EeeeeeeeeCCCChHHHHHHHHHHHhCCCCcc---ccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHH
Q 015072           85 KV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ---VLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      .+ +...+.+.... +..... ....+...+++.+   +++.+++....+.    .....+++.+.++.++|..+++.|.
T Consensus       351 ~~~~~~~g~l~~~~-~~~~~~-~~~~~~~~g~~~~~~~~l~~~~~~~~~~l----~~~~gg~~~p~~g~v~p~~l~~aL~  424 (676)
T 3ps9_A          351 KFDHDWCGVTQLGW-DEKSQH-KIAQMLSMDLPAELAVAVEANAVEQITGV----ATNCSGITYPQGGWLCPAELTRNVL  424 (676)
T ss_dssp             CCCEECCCEEEECC-SHHHHH-HHHHHHTSCCCTTTCEEECHHHHHHHHSS----CCSSCEEEETTCEEECHHHHHHHHH
T ss_pred             CcCcCcCCeeeecC-CHHHHH-HHHHHHhcCCcHHHhhhCCHHHHHHhhCC----CccCCcEEecCCeeeCHHHHHHHHH
Confidence            44 22334444433 223332 2233445566655   8888888877663    4566788999999999999999999


Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEec
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK  240 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~  240 (413)
                      +.+++.|++|+++++|++|..  +  ++.+.|++.+|.++.||.||+|+|+|+..+....   .+|+.|.+|+++.++..
T Consensus       425 ~~a~~~Gv~i~~~t~V~~l~~--~--~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~---~lpl~p~rGq~~~~~~~  497 (676)
T 3ps9_A          425 ELAQQQGLQIYYQYQLQNFSR--K--DDCWLLNFAGDQQATHSVVVLANGHQISRFSQTS---TLPVYSVAGQVSHIPTT  497 (676)
T ss_dssp             HHHHHTTCEEEESCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECCGGGGGCSTTTT---TCSCEEEEEEEEEEECC
T ss_pred             HHHHhCCCEEEeCCeeeEEEE--e--CCeEEEEECCCCEEECCEEEECCCcchhcccccc---CCcceeecCEEEEECCC
Confidence            999999999999999999998  7  4568888888777999999999999998776654   47999999999988744


Q ss_pred             CCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCC-cCCCCCCCCCCCcchHHHHHHHHhhcCCCC---CC
Q 015072          241 EGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGY-LCDPDRRPWGPGPLLDSLKELIQGRFAGRV---DS  316 (413)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~---~~  316 (413)
                      +...       .++.....+   .|++|....+|.++++..... ..++.   . ..+..+.+.+.+.+++|.+.   +.
T Consensus       498 ~~~~-------~l~~~l~~~---~Yl~P~~~~~g~~~iG~t~~~~~~d~~---~-~~~~~~~~l~~l~~~~P~l~~~~~~  563 (676)
T 3ps9_A          498 PELA-------ELKQVLCYD---GYLTPQNPANQHHCIGASYHRGSEDTA---Y-SEDDQQQNRQRLIDCFPQAQWAKEV  563 (676)
T ss_dssp             TTGG-------GCCSEEESS---SEECCCBTTTTEEEEECCCEETCCCCC---C-CHHHHHHHHHHHHHHSTTCHHHHTC
T ss_pred             cccc-------cCCceeECC---eeeccccCCCCeEEEeeccCCCCCCCC---C-CHHHHHHHHHHHHHhCCCccccccC
Confidence            3211       123233322   688887622365555542211 11111   1 11256788888999999875   11


Q ss_pred             -CCCceeeeeeeeccCCCCeEEecCCC-----------------------CCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072          317 -SGPAATQLCMYSMTPDKDFVIDFLGG-----------------------ELGEDVVVAGGFSGHGFKMAPVVGRILADL  372 (413)
Q Consensus       317 -~~~~~~~~g~~~~t~d~~p~ig~~~~-----------------------~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~  372 (413)
                       ......|+|+||+|+|++|+||++|.                       .  +|+|+++||||+|+++||++|+++|++
T Consensus       564 d~~~~~~~~G~R~~t~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~~--~~l~~a~G~g~~Gl~~Ap~~ae~lA~~  641 (676)
T 3ps9_A          564 DVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVF--DDLFMFAALGSRGLCSAPLCAEILAAQ  641 (676)
T ss_dssp             CCTTCCEEEEEEEECTTCCCEEEEEECHHHHHHHTTTTTSCCTTCCSCCEE--EEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccceEEEEeCccCCcCCccCcCCChHHHHHHHHhhhccccccccCCCC--CCEeeeecccccHHHHHHHHHHHHHHH
Confidence             13578999999999999999999875                       4  899999999999999999999999999


Q ss_pred             HHcCCCCccc---cccccccccCCCCCCCcccc
Q 015072          373 VLSGEAQGVE---LRHFRIARFKENPKGNVKDY  402 (413)
Q Consensus       373 i~~~~~~~~~---~~~~~~~R~~~~~~~~~~~~  402 (413)
                      |+ |++.+++   ++.|+|+||..+++.+.++.
T Consensus       642 i~-g~~~pl~~~~l~~~~p~Rf~~r~l~~~~~~  673 (676)
T 3ps9_A          642 MS-DEPIPMDASTLAALNPNRLWVRKLLKGKAV  673 (676)
T ss_dssp             HT-TCCCSSBHHHHHTTCTTHHHHHHHHTTC--
T ss_pred             Hc-CCCCCCCHHHHhhhChHHhHHHHHhccCCC
Confidence            98 6665666   79999999988776665544

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=100.00  E-value=1.2e-40  Score=332.05  Aligned_cols=365  Identities=15%  Similarity=0.128  Sum_probs=263.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc--ccch----HHHHHHHHHHHHH
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPM----VLESSLLWEQAQS   80 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~   80 (413)
                      ++||+|||||++|+++|+.|+++|++|+|||++...+ .+++....|.+...+....  ..++    ...+.+.|.++..
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g-~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~  342 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPA-QGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLE  342 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTT-CSGGGCSCEEECCCCCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCccc-cccccccCCEEecCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence            5899999999999999999999999999999976554 3456666666665443221  2222    2335566666622


Q ss_pred             hcCCee-EeeeeeeeeCCCChHHHHHHHHHHHhCCCCcc---ccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHH
Q 015072           81 EIGYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ---VLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAV  156 (413)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                       .+.++ +...+.+.+.. ....... ...+...+++.+   .++.+++...++.    .....+++.+.++.++|..++
T Consensus       343 -~~~~~~~~~~g~l~~~~-~~~~~~~-~~~~~~~g~~~~~~~~l~~~~~~~~~~l----~~~~gg~~~p~~g~v~p~~l~  415 (689)
T 3pvc_A          343 -QGIAFDHQWCGVSQLAF-DDKSRGK-IEKMLHTQWPVEFAEAMSREQLSELAGL----DCAHDGIHYPAGGWLCPSDLT  415 (689)
T ss_dssp             -TTCCCCEECCCEEEECC-SHHHHHH-HHHHTTSCCCTTTCEEECHHHHHHHHSS----CCSSCEEEETTCEEECHHHHH
T ss_pred             -hccccccccCceEEecc-CHHHHHH-HHHHHhcCCChHHhhccCHHHHHHhcCC----CcccceEEecCCeEECHHHHH
Confidence             23443 33345554433 2233322 223345566655   8888888887763    456778999999999999999


Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc-EEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEE
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-EFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVC  235 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~  235 (413)
                      +.|.+.+++.|++|+++++|++|..  +  ++++.|++.+|+ ++.||.||+|+|+|+..+....   .+|+.|.+|+++
T Consensus       416 ~aL~~~a~~~Gv~i~~~t~V~~l~~--~--~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~---~lpl~p~rGq~~  488 (689)
T 3pvc_A          416 HALMMLAQQNGMTCHYQHELQRLKR--I--DSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTH---HLPLSAVRGQVS  488 (689)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEE--C--SSSEEEEEC-CCCCEEESEEEECCGGGTTCSTTTT---TSCCEEEEEEEE
T ss_pred             HHHHHHHHhCCCEEEeCCeEeEEEE--e--CCeEEEEeCCCcEEEECCEEEECCCcchhcccccc---CCccccccCcEE
Confidence            9999999999999999999999998  7  345888888876 6999999999999998776654   479999999999


Q ss_pred             EEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCC-cCCCCCCCCCCCcchHHHHHHHHhhcCCCC
Q 015072          236 YWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGY-LCDPDRRPWGPGPLLDSLKELIQGRFAGRV  314 (413)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~  314 (413)
                      .++......       .++.....+   .|++|....+|.++++..... ..++.   . ..+..+.+.+.+.+++|.+.
T Consensus       489 ~~~~~~~~~-------~l~~v~~~~---~Yl~P~~~~~g~~~iGat~~~~~~d~~---~-~~~~~~~ll~~l~~~~P~l~  554 (689)
T 3pvc_A          489 HIPTTPVLS-------QLQQVLCYD---GYLTPVNPANQHHCIGASYQRGDIATD---F-RLTEQQENRERLLRCLPQVS  554 (689)
T ss_dssp             EEECCTTGG-------GCCSEEESS---SEECCCBTTTTEEEEECCCEETBCCCC---C-CHHHHHHHHHHHHHHCTTCS
T ss_pred             EECCCCccc-------cCCeeEeCC---ceEccccCCCCeEEEEEeccCCCCCCC---C-CHHHHHHHHHHHHHhCCCcc
Confidence            887443211       123333332   688887522365555542211 11111   1 11256788889999999876


Q ss_pred             C---C-CCCceeeeeeeeccCCCCeEEecCCC-------------------------------CCCCCEEEEeCCCcccc
Q 015072          315 D---S-SGPAATQLCMYSMTPDKDFVIDFLGG-------------------------------ELGEDVVVAGGFSGHGF  359 (413)
Q Consensus       315 ~---~-~~~~~~~~g~~~~t~d~~p~ig~~~~-------------------------------~~~~~~~~~~G~~~~G~  359 (413)
                      .   . ..+...|+|+||+|+|++|+||++|.                               .  +|+|+++||||+|+
T Consensus       555 ~~~~~~~~~~~~w~G~R~~t~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~--~~l~~a~G~g~~Gl  632 (689)
T 3pvc_A          555 WPQQVDVSDNQARCGVRCAIRDHLPMVGAVPDYAATLAQYQDLSRRIQHGGESEVNDIAVAPVW--PELFMVGGLGSRGL  632 (689)
T ss_dssp             GGGGCCCTTCCEEEEEEEECTTSCCEEEEEECHHHHHHHSTTHHHHC--------CCCCCCCEE--EEEEEEECCTTCHH
T ss_pred             ccccccccccceeEEEeeecCCCCcccCcCCCHHHHHHHHHhhhccccccccccccccccCCCC--CChHHhhcccccHH
Confidence            1   1 13578999999999999999999885                               4  89999999999999


Q ss_pred             ccchHHHHHHHHHHHcCCCCccc---cccccccccCCCCCCCccccc
Q 015072          360 KMAPVVGRILADLVLSGEAQGVE---LRHFRIARFKENPKGNVKDYE  403 (413)
Q Consensus       360 ~~a~~~a~~~a~~i~~~~~~~~~---~~~~~~~R~~~~~~~~~~~~~  403 (413)
                      ++||++|++||++|+ |++.+.+   ++.|+|+||..+++.+.++..
T Consensus       633 ~~ap~~ae~lA~~i~-g~~~p~~~~~l~~~~p~Rf~~r~l~~~~~~~  678 (689)
T 3pvc_A          633 CSAPLVAEILAAQMF-GEPLPLDAKTLAALNPNRFWIRKLLKGRPVQ  678 (689)
T ss_dssp             HHHHHHHHHHHHHHT-TCCCSSCHHHHHTTCTTHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHc-CCCCCCCHHHHhhcChhHHHHHHHhcCCccc
Confidence            999999999999998 6665666   899999999998887777774

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=100.00  E-value=9.7e-41  Score=311.71  Aligned_cols=355  Identities=19%  Similarity=0.237  Sum_probs=260.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccC---CccccchHHHHHHHHHHHHHhc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESSLLWEQAQSEI   82 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   82 (413)
                      .++||+|||||++|+++|++|+++|++|+|||+...++  +++..+.|.+.....   ......+...+.+.|.++.+.+
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   93 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGG--RTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEEL   93 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTT--THHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCc--ccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999987653  455556666655443   2234556666777776554433


Q ss_pred             ----CCee-EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072           83 ----GYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        83 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                          +.++ +...+.+.+... ......+....+ . ...++++.+++...+|. +. .....+++.+.++.+++..+++
T Consensus        94 ~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~p~-~~-~~~~~~~~~~~~~~~~~~~~~~  168 (382)
T 1ryi_A           94 YALSGVDIRQHNGGMFKLAFS-EEDVLQLRQMDD-L-DSVSWYSKEEVLEKEPY-AS-GDIFGASFIQDDVHVEPYFVCK  168 (382)
T ss_dssp             HHHHCCCCCCBCCCEEEEESS-HHHHHHHHTTTT-S-TTEEEEEHHHHHHHCTT-SC-TTCCEEEEETTCCBCCHHHHHH
T ss_pred             HHhhCCCcCeeecceEEEEeC-HHHHHHHHHHhh-c-CCeEEECHHHHHHhCCC-CC-cccceEEEeCCCeEEcHHHHHH
Confidence                5554 334444444332 222222222222 1 45678888888888886 44 4456788888999999999999


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEE
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYW  237 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~  237 (413)
                      .|.+.+++.|++++++++|++|..  +  ++.+.|++.+| +++||.||+|+|.|+..+.+.+ +..+|+.+.+++++.+
T Consensus       169 ~l~~~~~~~g~~i~~~~~v~~i~~--~--~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~-~~~~~~~~~~g~~~~~  242 (382)
T 1ryi_A          169 AYVKAAKMLGAEIFEHTPVLHVER--D--GEALFIKTPSG-DVWANHVVVASGVWSGMFFKQL-GLNNAFLPVKGECLSV  242 (382)
T ss_dssp             HHHHHHHHTTCEEETTCCCCEEEC--S--SSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHT-TCCCCCEEEEEEEEEE
T ss_pred             HHHHHHHHCCCEEEcCCcEEEEEE--E--CCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhc-CCCCceeccceEEEEE
Confidence            999999999999999999999988  6  34567888777 5999999999999998888876 7788999999999887


Q ss_pred             EecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCC-cCCCCCCCCCCCcchHHHHHHHHhhcCCCCCC
Q 015072          238 RIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGY-LCDPDRRPWGPGPLLDSLKELIQGRFAGRVDS  316 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~  316 (413)
                      +.+...   +    .... ..   ...|++|..+  +.+.++..... ..+.    ....+..+.+.+.+.+++|.+.+.
T Consensus       243 ~~~~~~---~----~~~~-~~---~~~~~~p~~~--g~~~vG~~~~~~~~~~----~~~~~~~~~l~~~~~~~~p~l~~~  305 (382)
T 1ryi_A          243 WNDDIP---L----TKTL-YH---DHCYIVPRKS--GRLVVGATMKPGDWSE----TPDLGGLESVMKKAKTMLPAIQNM  305 (382)
T ss_dssp             ECCSSC---C----CSEE-EE---TTEEEEECTT--SEEEEECCCEETCCCC----SCCHHHHHHHHHHHHHHCGGGGGS
T ss_pred             CCCCCC---c----cceE-Ec---CCEEEEEcCC--CeEEEeecccccCCCC----CCCHHHHHHHHHHHHHhCCCcCCC
Confidence            643211   1    1122 22   2478888754  55555542211 1111    111226788999999999998753


Q ss_pred             CCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCcccc-ccccccccCCC
Q 015072          317 SGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVEL-RHFRIARFKEN  394 (413)
Q Consensus       317 ~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~-~~~~~~R~~~~  394 (413)
                       .....|+|+|++++|+.|+||++|..  +|+|+++|++|+|+++||++|+++|++|+++.. +.++ +.|+|+||...
T Consensus       306 -~~~~~w~g~~~~t~d~~p~ig~~~~~--~~l~~~~G~~g~G~~~a~~~g~~la~~i~~~~~-~~~~~~~~~~~Rf~~~  380 (382)
T 1ryi_A          306 -KVDRFWAGLRPGTKDGKPYIGRHPED--SRILFAAGHFRNGILLAPATGALISDLIMNKEV-NQDWLHAFRIDRKEAV  380 (382)
T ss_dssp             -EEEEEEEEEEEECSSSCCEEEEETTE--EEEEEEECCSSCTTTTHHHHHHHHHHHHTTCCC-CHHHHHHTCSCCC---
T ss_pred             -ceeeEEEEecccCCCCCcEeccCCCc--CCEEEEEcCCcchHHHhHHHHHHHHHHHhCCCC-CchhhcCCChhhcccC
Confidence             45678999999999999999999876  899999999999999999999999999995544 5567 99999999754

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=100.00  E-value=4.2e-38  Score=292.46  Aligned_cols=345  Identities=17%  Similarity=0.149  Sum_probs=250.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc---cccchHHHHHHHHHHHHHhc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED---YYHPMVLESSLLWEQAQSEI   82 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   82 (413)
                      +++||+|||||++|+++|++|+++|++|+|||+.+..+ .+++..+.+.++..+...   ...++...+.+.|.++.+..
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG-TGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAAR   81 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS-CSTTSSSCCEECCCCSSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC-CccCcCCccccccCccCCCCCHhHHHHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999986443 355666666665543221   22456667778888888777


Q ss_pred             CCeeEeeeeeeeeCCCC--hHHHHHHHHHHHhCCCC-ccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           83 GYKVYFKAHQFDMGPSE--NKSLRSVIASCRKNSVP-HQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      +.. +...+.+......  ...+..........+++ .+.++..++...+|. +   ....+.+.+..+.+++..+++.|
T Consensus        82 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~-~---~~~~~~~~~~~~~~~~~~~~~~l  156 (369)
T 3dme_A           82 GVP-HQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPA-L---HCTAALVSPSTGIVDSHALMLAY  156 (369)
T ss_dssp             TCC-EECCCEEEEECSHHHHTTHHHHHHHHHHTTCCCCEEEEHHHHHHHCTT-C---CCSEEEEETTCEEECHHHHHHHH
T ss_pred             CCC-cccCCEEEEecCHHHHHHHHHHHHHHHHcCCCceeecCHHHHHHhCCC-c---eeeeeeECCCCEEECHHHHHHHH
Confidence            766 3445555543322  23345566667778887 899999999998887 3   35678889999999999999999


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc--cEEEeCeEEEcCCcChhhhhhhhcCCC----cceeEEEEE
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG--EEFWGKKCVVTAGAWVGKLVKKISGLE----LPIQAVETS  233 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~vV~A~G~~~~~l~~~~~g~~----~p~~~~~~~  233 (413)
                      .+.+++.|++++++++|++|..  +++ +.+.|.+.+|  .+++||.||+|+|+|+..+++.+.|+.    .++.|.+|+
T Consensus       157 ~~~~~~~Gv~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~~~~~~~i~p~rG~  233 (369)
T 3dme_A          157 QGDAESDGAQLVFHTPLIAGRV--RPE-GGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGS  233 (369)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEE--CTT-SSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSCGGGSCCCEEEEEE
T ss_pred             HHHHHHCCCEEECCCEEEEEEE--cCC-ceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCCccccceeeecceE
Confidence            9999999999999999999998  632 3477888887  369999999999999998887663553    579999999


Q ss_pred             EEEEEecCCCccccccCCCCceEEec--CCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcC
Q 015072          234 VCYWRIKEGDEADYAVGGDFPSFASY--GDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFA  311 (413)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p  311 (413)
                      ++.++.+....        ...+...  ....+++++..+  |.+.++.+.+...+ .... ...+.++.+.+.+.+++|
T Consensus       234 ~~~~~~~~~~~--------~~~~~~p~~~~~~~~~~~~~~--g~~~iG~t~e~~~~-~~~~-~~~~~~~~l~~~~~~~~P  301 (369)
T 3dme_A          234 YFTLAGRAPFS--------RLIYPVPQHAGLGVHLTLDLG--GQAKFGPDTEWIAT-EDYT-LDPRRADVFYAAVRSYWP  301 (369)
T ss_dssp             EEECSSSCSCS--------SEEEECTTCSSCCCCEEECTT--SCEEECCCCEEESS-CCCC-CCGGGGGGHHHHHHTTCT
T ss_pred             EEEECCCCccC--------ceeecCCCCCCceEEEeCccC--CcEEECCCcccccc-cccc-cCHHHHHHHHHHHHHHCC
Confidence            87665221110        1111111  111233333332  44544442221011 1111 112278889999999999


Q ss_pred             CCCCCCCCceeeeeeeecc-----CCCCeEE-ec-CCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH
Q 015072          312 GRVDSSGPAATQLCMYSMT-----PDKDFVI-DF-LGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL  374 (413)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~t-----~d~~p~i-g~-~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~  374 (413)
                      .+.+. .+...|+|+||.+     +|+.|+| |+ ++..  +|+|+++||+++|+++||++|+.++++|.
T Consensus       302 ~l~~~-~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~~~~~--~~l~~~~G~~~~G~t~ap~~a~~~a~~i~  368 (369)
T 3dme_A          302 ALPDG-ALAPGYTGIRPKISGPHEPAADFAIAGPASHGV--AGLVNLYGIESPGLTASLAIAEETLARLA  368 (369)
T ss_dssp             TCCTT-CCEEEEEEEEEESSCTTSCCCCCEEECHHHHCC--TTEEEEECCCTTHHHHHHHHHHHHHHHHC
T ss_pred             CCChh-hceecceeccccccCCCCCcCCeEEecccccCC--CCEEEEeCCCCchHhccHHHHHHHHHHhh
Confidence            99864 5678899999997     5789998 87 4666  99999999999999999999999999984

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=100.00  E-value=2.3e-38  Score=322.12  Aligned_cols=372  Identities=17%  Similarity=0.178  Sum_probs=269.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      +++||+|||||++|+++|++|+++|+ +|+|||++...+..+++..+.|.+...........+...+.+.|.++.+ .+.
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~~~~~~~~l~~~s~~~~~~l~~-~~~   81 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTE-DGV   81 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEE-TTE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCcccceeCCceeecCCCCHHHHHHHHHHHHHHHHHHh-hCC
Confidence            46899999999999999999999998 9999999886533344555556655444444445566677777777642 233


Q ss_pred             eeEeeeeeeeeCCCC--hHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      ..+...+.+.+....  .+.+......+...|++.+.++.+++.+.+|. +.......+++.+.++.++|..+++.|.+.
T Consensus        82 ~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~~~~~l~~~e~~~~~p~-l~~~~~~gg~~~~~~g~v~p~~l~~~L~~~  160 (830)
T 1pj5_A           82 SCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPL-LDGENILGGLHVPSDGLASAARAVQLLIKR  160 (830)
T ss_dssp             ESEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTT-SCGGGCCEEEEETTCEEECHHHHHHHHHHH
T ss_pred             CCeeecCcEEEEeCHHHHHHHHHHHHHHHHcCCCeEEECHHHHHHhCcc-CCccceEEEEEECCCceEcHHHHHHHHHHH
Confidence            345556666554332  23344445566677888899999999999887 554456778999999999999999999999


Q ss_pred             HHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCC
Q 015072          163 AIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEG  242 (413)
Q Consensus       163 ~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~  242 (413)
                      +++.|++++++++|++|..  +++ ..+.|.+.+|+ ++||.||+|+|+|+..+.+.+ |..+|+.|.+++++.....+.
T Consensus       161 a~~~Gv~i~~~t~V~~i~~--~~~-~v~~V~t~~G~-i~Ad~VV~AaG~~s~~l~~~~-g~~~pl~p~~g~~~~~~~~~~  235 (830)
T 1pj5_A          161 TESAGVTYRGSTTVTGIEQ--SGG-RVTGVQTADGV-IPADIVVSCAGFWGAKIGAMI-GMAVPLLPLAHQYVKTTPVPA  235 (830)
T ss_dssp             HHHTTCEEECSCCEEEEEE--ETT-EEEEEEETTEE-EECSEEEECCGGGHHHHHHTT-TCCCCCEEEEEEEEEESCCGG
T ss_pred             HHHcCCEEECCceEEEEEE--eCC-EEEEEEECCcE-EECCEEEECCccchHHHHHHh-CCCccceeceeEEEEEecCcc
Confidence            9999999999999999998  622 33467788884 999999999999998887766 888999999999887653221


Q ss_pred             Ccc-cc-ccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCC-cCCCCC---------------CCC-CCCcchHHHH
Q 015072          243 DEA-DY-AVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGY-LCDPDR---------------RPW-GPGPLLDSLK  303 (413)
Q Consensus       243 ~~~-~~-~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~-~~~~~~---------------~~~-~~~~~~~~l~  303 (413)
                      ... .. .....+|++... +..+|++|..+  +++.++..... ...+..               .+. ...+.++.+.
T Consensus       236 ~~~~~~~~~~~~~pv~~~~-~~~~y~r~~~~--~l~iG~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~  312 (830)
T 1pj5_A          236 QQGRNDQPNGARLPILRHQ-DQDLYYREHGD--RYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAW  312 (830)
T ss_dssp             GTTTSCTTTCCCSCEEEEG-GGTEEEEEETT--EEEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEECCCHHHHHHHH
T ss_pred             cccccccccCCCCCeEEcC-CCCEEEEEeCC--eEEEeccCCCCcccCcccccccccccccccccccccCCCHHHHHHHH
Confidence            110 00 001235555432 23478887643  44444332110 001000               000 1112567888


Q ss_pred             HHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCcccc
Q 015072          304 ELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVEL  383 (413)
Q Consensus       304 ~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~  383 (413)
                      +.+.+++|.+.+. .+...|+|+|++|+|+.|+||++|..  +|+|+++|+   |+++||++|+++|++|+++.+ +.++
T Consensus       313 ~~~~~~~P~l~~~-~i~~~w~G~r~~t~D~~PiIG~~p~~--~gl~va~G~---G~~~ap~~g~~la~li~~~~~-~~dl  385 (830)
T 1pj5_A          313 EATKQLLPALADS-EIEDGFNGIFSFTPDGGPLLGESKEL--DGFYVAEAV---WVTHSAGVAKAMAELLTTGRS-ETDL  385 (830)
T ss_dssp             HHHHHHCGGGGGS-CEEEEEEEEEEECTTSCCEEEECSSS--BTEEEEESC---CGGGHHHHHHHHHHHHHHSSC-SSCC
T ss_pred             HHHHHhCcccccc-CcceEEEeecccCCCCCeeeccCCCC--CCEEEEECc---hHHhhHHHHHHHHHHHhCCCC-Cccc
Confidence            8999999998863 56789999999999999999999987  999999987   799999999999999996655 5678


Q ss_pred             ccccccccCCC
Q 015072          384 RHFRIARFKEN  394 (413)
Q Consensus       384 ~~~~~~R~~~~  394 (413)
                      +.|+|.||...
T Consensus       386 ~~~~~~Rf~~~  396 (830)
T 1pj5_A          386 GECDITRFEDV  396 (830)
T ss_dssp             TTTBGGGCCGG
T ss_pred             cccChhhhccc
Confidence            99999999764

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=100.00  E-value=4.6e-36  Score=276.59  Aligned_cols=312  Identities=10%  Similarity=-0.002  Sum_probs=218.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC------CcEEEEcccCCCCCCCCCCCCCcceecccCCcccc---chHHHHHHHHHHH
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG------QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH---PMVLESSLLWEQA   78 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g------~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~   78 (413)
                      +||+|||||++|+++|++|+++|      ++|+|||+....+  ++|..++|.+..........   .+...+.+.|.++
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~--~aS~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPL--TTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSH   78 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGG--SGGGTCCCBCCCCSSCCSCTHHHHHHHHHHHHHHTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCC--CccccCcceeecccCCCchHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999998      9999999987653  56666677766533322222   3333444444443


Q ss_pred             HHhc---CCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHH
Q 015072           79 QSEI---GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKA  155 (413)
Q Consensus        79 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  155 (413)
                      ....   ...+....+.+.......      ...+.+.+.+++.++.+++ ..+|.      ...+++.+ ++.++|..+
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~l~~~e~-~~~p~------~~~~~~~~-~~~v~p~~~  144 (351)
T 3g3e_A           79 VHSPNAENLGLFLISGYNLFHEAIP------DPSWKDTVLGFRKLTPREL-DMFPD------YGYGWFHT-SLILEGKNY  144 (351)
T ss_dssp             TTSTTHHHHTEEEEEEEEEESSCCC------CCGGGGTSEEEEECCHHHH-TTCTT------CCEEEEEE-EEEECHHHH
T ss_pred             hhccCCCCccEEEEEEEEEecCCcc------ccCHHHhCCCceECCHHHh-ccCCC------CceEEEec-ceEEcHHHH
Confidence            3322   112223444444332221      1233456677788998887 44453      34566666 599999999


Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEE
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVC  235 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~  235 (413)
                      ++.|.+.+++.|++++. ++|+++..  .   .         . ++||.||+|+|+|+..+++.     .|+.|.+++++
T Consensus       145 ~~~l~~~~~~~Gv~i~~-~~V~~i~~--~---~---------~-~~a~~VV~A~G~~s~~l~~~-----~~l~p~rg~~~  203 (351)
T 3g3e_A          145 LQWLTERLTERGVKFFQ-RKVESFEE--V---A---------R-EGADVIVNCTGVWAGALQRD-----PLLQPGRGQIM  203 (351)
T ss_dssp             HHHHHHHHHHTTCEEEE-CCCCCHHH--H---H---------H-TTCSEEEECCGGGGGGTSCC-----TTCEEEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEE-EEeCCHHH--h---h---------c-CCCCEEEECCCcChHhhcCC-----CceeecCCcEE
Confidence            99999999999999987 88887765  4   1         1 56999999999999887653     69999999999


Q ss_pred             EEEecCCCccccccCCCCceEEe----cCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcC
Q 015072          236 YWRIKEGDEADYAVGGDFPSFAS----YGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFA  311 (413)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p  311 (413)
                      .++.+. .        ..+.+..    ..+..+|++|..+  +++.+++......++.    ...+..+.+.+.+.+++|
T Consensus       204 ~~~~~~-~--------~~~~~~~~~~~~~~~~~y~~p~~~--~~~iGg~~~~~~~~~~----~~~~~~~~l~~~~~~~~P  268 (351)
T 3g3e_A          204 KVDAPW-M--------KHFILTHDPERGIYNSPYIIPGTQ--TVTLGGIFQLGNWSEL----NNIQDHNTIWEGCCRLEP  268 (351)
T ss_dssp             EEECTT-C--------CSEEEECCTTTCTTCSCEEEECSS--CEEEECCCEETCCCCS----CCHHHHHHHHHHHHHHCG
T ss_pred             EEeCCC-c--------ceEEEeccccCCCCceeEEEeCCC--cEEEeeeeecCCCCCC----CCHHHHHHHHHHHHHhCC
Confidence            887421 1        1222221    1234589998864  5555544221111111    112278899999999999


Q ss_pred             CCCCCCCCceeeeeeeeccCCCCeE----EecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072          312 GRVDSSGPAATQLCMYSMTPDKDFV----IDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS  375 (413)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~t~d~~p~----ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~  375 (413)
                      .+.+. .+...|+|+||+|+| .|+    ||++|..  +|+|+++||+|+|+++||++|+++|++|.+
T Consensus       269 ~l~~~-~i~~~w~G~r~~t~D-~p~~~~~ig~~~~~--~~~~~~~G~~g~G~~~ap~~g~~la~li~~  332 (351)
T 3g3e_A          269 TLKNA-RIIGERTGFRPVRPQ-IRLEREQLRTGPSN--TEVIHNYGHGGYGLTIHWGCALEAAKLFGR  332 (351)
T ss_dssp             GGGGC-EEEEEEEEEEEECSS-CEEEEEEECCSSSC--EEEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCC-cEeeeeEeeCCCCCC-ccceeeeccCCCCC--CeEEEEeCCCcchHhhhHHHHHHHHHHHHH
Confidence            98763 567899999999999 885    7777766  899999999999999999999999999983

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=100.00  E-value=2.7e-35  Score=276.21  Aligned_cols=326  Identities=17%  Similarity=0.123  Sum_probs=218.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCc-ce--ecccCCccccchHHHHHHHHHHHHH
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESR-TI--RATYPEDYYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~   80 (413)
                      .++||+|||||++|+++|++|+++  |++|+|||+....+  +++..+.+ .+  ...+... ...+...+.+.|.+   
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~--~~s~~~~g~~i~~~~~~~~~-~~~l~~~~~~~~~~---  108 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN--EEGATILAPGVWTAQDIPAG-QEAQAEWTREQLLG---  108 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSC--TTSHHHHCCCEECGGGCCTT-CHHHHHHHHHHHHT---
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCC--cchhccCCcceeecccCCch-HHHHHHHHHHHHHH---
Confidence            358999999999999999999999  99999999986653  33333333 22  2222222 45566666666665   


Q ss_pred             hcCC--ee-EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccC----CCCeEEEEecCCeeecHH
Q 015072           81 EIGY--KV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEI----PENWVGVTTELGGVIKPT  153 (413)
Q Consensus        81 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~  153 (413)
                      ..+.  +. +...+.+.....           ....+    .++..++...+|. +..    .....+++.+..+++++.
T Consensus       109 ~~~~~~~~~~~~~g~l~~~~~-----------~~~~g----~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~g~v~~~  172 (405)
T 3c4n_A          109 ALGSGKTLEVEDRPLLHLLPA-----------GEGSG----LTPTLDALADFPE-ALALLDPARLPVARVDPRALTYRPG  172 (405)
T ss_dssp             GGGSSCCCCEEECCEEEEESS-----------CCSSS----CEEHHHHTTTCHH-HHTTSCTTTSCEEEEETTCEEECHH
T ss_pred             HhCCCCCCcEEeeCeEEehhh-----------HhHCC----CCCHHHHHHhCCC-ccccccCCcceEEEEcCCCEEEcHH
Confidence            3333  22 334444332110           01111    3445554444443 221    456778899999999999


Q ss_pred             HHHHHHHHHHHHcCCeEecCceEE---------EEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhh-hhcCC
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVK---------TVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVK-KISGL  223 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~---------~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~-~~~g~  223 (413)
                      .+++.|.+.+++.|++++++++|+         +|..  +  ++.+.|++.+| +++||.||+|+|+|+..+++ .+ +.
T Consensus       173 ~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~--~--~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~-g~  246 (405)
T 3c4n_A          173 SLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTV--T--NTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGL-GL  246 (405)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-----------CBCCE-EEEEEEEEECCGGGHHHHHHHHH-CC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEe--e--CCeEEEEECCc-EEECCEEEECCCccHHHHHHHhc-CC
Confidence            999999999999999999999999         8877  5  34457777777 59999999999999988888 66 88


Q ss_pred             CcceeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCC---CcCCCC-----CC-CCC
Q 015072          224 ELPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRG---YLCDPD-----RR-PWG  294 (413)
Q Consensus       224 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~---~~~~~~-----~~-~~~  294 (413)
                      .+|+.+.+++++.++.+..    ..    .+.+.   ...+|++|..+  |.++++....   ...++.     .. ...
T Consensus       247 ~~~~~~~~g~~~~~~~~~~----~~----~~~~~---~~~~y~~p~~~--g~~~~G~t~~~~~~~~~~~~~~~~~~~~~~  313 (405)
T 3c4n_A          247 HTRHGRAYRQFPRLDLLSG----AQ----TPVLR---ASGLTLRPQNG--GYTLVPAIHHRDPHGYHPAGGSLTGVPTGL  313 (405)
T ss_dssp             CCCCEEEEEECCEECSCCC----TT----CCEEE---ETTEEEEEETT--EEEEECCCCSCBCSSCCCCCCCBTTBCCSS
T ss_pred             CCCcccceeEEEEECCCCc----cC----CCeEE---CCcEEEEEcCC--CeEEEeccccccccCcCcccccccccccCC
Confidence            8899999999876652211    10    12222   23488888754  5555544211   111111     00 011


Q ss_pred             CCcchHHHHHHHHhhcCCCCCCC--------CCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHH
Q 015072          295 PGPLLDSLKELIQGRFAGRVDSS--------GPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVG  366 (413)
Q Consensus       295 ~~~~~~~l~~~~~~~~p~~~~~~--------~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a  366 (413)
                      ..+.++.+.+.+ ++||.+.+..        .+...|+|+||+|+|+.|+||+++    +|+|+++||+|+ +++||++|
T Consensus       314 ~~~~~~~l~~~~-~~~P~l~~~~~~~~r~~~~i~~~w~G~r~~t~D~~P~ig~~~----~gl~~a~G~~g~-~~~ap~~a  387 (405)
T 3c4n_A          314 RRELLEDLVGLM-DAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAEELA----PGLHLLLGGPLA-DTLGLAAA  387 (405)
T ss_dssp             CHHHHHHHHHHT-TTCGGGGSSCBCCCSSGGGSCEEEEEEGGGCTTCCCEEEEEE----TTEEEEECCTTH-HHHHHHHH
T ss_pred             CHHHHHHHHHHH-HhCCCccccCccccccccceeeEEEeecCcCCCCCCEecccC----CCeEEEEccCcH-HHHHHHHH
Confidence            112455555443 8999887631        166799999999999999999987    799999999886 49999999


Q ss_pred             HHHHHHHHcCCC
Q 015072          367 RILADLVLSGEA  378 (413)
Q Consensus       367 ~~~a~~i~~~~~  378 (413)
                      +++|++|+++..
T Consensus       388 ~~la~~i~~~~~  399 (405)
T 3c4n_A          388 HELAQRVSASLE  399 (405)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHhCchh
Confidence            999999985443

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=100.00  E-value=9.9e-34  Score=262.20  Aligned_cols=319  Identities=13%  Similarity=0.008  Sum_probs=212.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCC---CCCCCCcceeccc---CCccccchHHHHHHHHHH
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRG---SSHGESRTIRATY---PEDYYHPMVLESSLLWEQ   77 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~---~s~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   77 (413)
                      |.+++||+|||||++|+++|++|+++|++|+|||+...+.+..   ++....+.+....   ......++...+.+.|.+
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g~s~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKWVE   82 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCcCCcCcccCcccccccCcccCCCchHHHHHHHHHHHHHHH
Confidence            4567999999999999999999999999999999987654211   1222233333221   122334555566666776


Q ss_pred             HHHh-cCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHH
Q 015072           78 AQSE-IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAV  156 (413)
Q Consensus        78 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      +... .++..   .+.+.+...+..   .....++..+.+++.++.+++    |.      ...+++. .+++++|..++
T Consensus        83 ~~~~~~g~~~---~~~~~~~~~~~~---~~~~~~~~~g~~~~~l~~~~~----p~------~~~g~~~-~~~~v~p~~~~  145 (363)
T 1c0p_A           83 LVPTGHAMWL---KGTRRFAQNEDG---LLGHWYKDITPNYRPLPSSEC----PP------GAIGVTY-DTLSVHAPKYC  145 (363)
T ss_dssp             HTTTTSSEEE---EEEEEEESSGGG---GGGGTTTTTSTTCEECCGGGS----ST------TCEEEEE-EEEECCHHHHH
T ss_pred             hCcccCCeEE---ECCEEEEecCcc---chhHHHHHhCCCcEECCHHHC----CC------ceEEEEE-ecceecHHHHH
Confidence            6444 44332   222322222211   112233445666677776543    22      2245555 77899999999


Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEE
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCY  236 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~  236 (413)
                      +.|.+.+++.|++++. ++|++|..  +        .     + +||.||+|+|+|+..+...   ...|+.|.+++++.
T Consensus       146 ~~l~~~~~~~G~~i~~-~~v~~l~~--~--------~-----~-~a~~VV~A~G~~s~~l~~~---~~~~~~p~rg~~~~  205 (363)
T 1c0p_A          146 QYLARELQKLGATFER-RTVTSLEQ--A--------F-----D-GADLVVNATGLGAKSIAGI---DDQAAEPIRGQTVL  205 (363)
T ss_dssp             HHHHHHHHHTTCEEEE-CCCSBGGG--T--------C-----S-SCSEEEECCGGGGGTSBTT---CCTTEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCEEEE-EEcccHhh--c--------C-----c-CCCEEEECCCcchhhccCc---ccCCccccCCeEEE
Confidence            9999999999999997 88887755  2        0     1 6999999999999877653   35799999999988


Q ss_pred             EEecCCCccccccCCCCceEEec-CCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCC
Q 015072          237 WRIKEGDEADYAVGGDFPSFASY-GDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVD  315 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~  315 (413)
                      ++.+..          ++.+... .....|++|..+  |.+.++.+.....   .......+..+.+.+.+.+++|.+..
T Consensus       206 ~~~~~~----------~~~~~~~~~~~~~y~~p~~~--g~~~iG~t~~~~~---~~~~~~~~~~~~l~~~~~~~~P~l~~  270 (363)
T 1c0p_A          206 VKSPCK----------RCTMDSSDPASPAYIIPRPG--GEVICGGTYGVGD---WDLSVNPETVQRILKHCLRLDPTISS  270 (363)
T ss_dssp             EECCCC----------CCEEECSCTTCCEEEEEETT--TEEEEECCCEETC---CCCSCCHHHHHHHHHHHHHHCGGGSS
T ss_pred             EeCCcc----------cceEeeccCCCcEEEEEcCC--CEEEEEeeeccCC---CCCCCCHHHHHHHHHHHHHhCccccC
Confidence            874331          1111111 112378888753  5555554321111   01111122678899999999998832


Q ss_pred             -----CCCCceeeeeeeeccCCCCeEEecC-C-------C----------CC-C--CCEEEEeCCCccccccchHHHHHH
Q 015072          316 -----SSGPAATQLCMYSMTPDKDFVIDFL-G-------G----------EL-G--EDVVVAGGFSGHGFKMAPVVGRIL  369 (413)
Q Consensus       316 -----~~~~~~~~~g~~~~t~d~~p~ig~~-~-------~----------~~-~--~~~~~~~G~~~~G~~~a~~~a~~~  369 (413)
                           ...+...|+|+||+|+|+.|++|++ +       .          .+ .  +|+|+++||+|+|+++||++|+++
T Consensus       271 ~~~~~~~~i~~~w~G~rp~t~d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~~~~~~a~G~~g~G~~~a~~~g~~~  350 (363)
T 1c0p_A          271 DGTIEGIEVLRHNVGLRPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAEDV  350 (363)
T ss_dssp             SSSGGGCEEEEEEEEEEEEETTSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEEEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcccccceEeeceEEECCCCCCCceeEEEecccccccccCccccccccccccccccceEEEecCCCCcchheeccHHHHH
Confidence                 0246789999999999999999873 1       0          00 1  589999999999999999999999


Q ss_pred             HHHHH
Q 015072          370 ADLVL  374 (413)
Q Consensus       370 a~~i~  374 (413)
                      |++|.
T Consensus       351 a~li~  355 (363)
T 1c0p_A          351 AQLVD  355 (363)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99997

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.98  E-value=8.6e-30  Score=244.89  Aligned_cols=344  Identities=15%  Similarity=0.111  Sum_probs=224.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccC--CccccchHHHHHHHHHHHHHhcCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ++||+|||||++|+++|+.|+++|++|+|||+.+..  .++|..+.+.++....  ......+..++...+..+.+... 
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~--~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~-   79 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLA--CATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAP-   79 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT--CSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCT-
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCC--CCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCC-
Confidence            589999999999999999999999999999998765  3566666677664321  12234555666666666554322 


Q ss_pred             eeEeeeeeeeeCCCC---hHHHHHHHHHHHhCCCCccccCHHHHHHhc--CCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSE---NKSLRSVIASCRKNSVPHQVLDCRQVLQKY--SGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      .+....+.+......   ..............+ ..++++.+++.+.+  |. +.. ....+++. .+++++|.+++..+
T Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~P~-l~~-~~~~~~~~-~~g~v~~~~l~~~l  155 (501)
T 2qcu_A           80 HIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLG-KRTSLPGSTGLRFGANSV-LKP-EIKRGFEY-SDCWVDDARLVLAN  155 (501)
T ss_dssp             TTEEEEEEEEECCTTTSCHHHHHHHHHHHHSSS-CCSSSCCCEEEECCTTSS-BCT-TCCEEEEE-EEEEECHHHHHHHH
T ss_pred             ccccccCeEeccCcccchHHHHHHHHHHHHhcC-CcEEECHHHHHHhhcCCC-cch-hceEEEEe-eCCEEcHHHHHHHH
Confidence            222222222221111   111122222222222 45677766655556  65 332 23344444 57889999999999


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe---CCcc--EEEeCeEEEcCCcChhhhhhh-hcCC-CcceeEEEE
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGE--EFWGKKCVVTAGAWVGKLVKK-ISGL-ELPIQAVET  232 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~vV~A~G~~~~~l~~~-~~g~-~~p~~~~~~  232 (413)
                      .+.+.+.|++++++++|+++..  +  ++.+.|++   .+|+  +++||.||+|+|+|+..+.+. +.+. ..|+.|.+|
T Consensus       156 ~~~a~~~Gv~i~~~~~V~~l~~--~--~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~~i~p~rG  231 (501)
T 2qcu_A          156 AQMVVRKGGEVLTRTRATSARR--E--NGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKG  231 (501)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEE--E--TTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCSSCBCCEEE
T ss_pred             HHHHHHcCCEEEcCcEEEEEEE--e--CCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCccccccccee
Confidence            9999999999999999999998  7  34566665   3564  699999999999999988775 4222 368999999


Q ss_pred             EEEEEEecCCCccccccCCCCceEEe-cCCCeeEecCCCCCCCeEEEEeCCC-CcCCCCCCCCCCCcchHHHHHHHHhhc
Q 015072          233 SVCYWRIKEGDEADYAVGGDFPSFAS-YGDPHVYGTPSLEYPGLIKIALHRG-YLCDPDRRPWGPGPLLDSLKELIQGRF  310 (413)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  310 (413)
                      +++.++  ....      ...+.+.. ...+.+|++|..+  |.+.+|.+.. ...++.... ...+..+.+.+.+.++|
T Consensus       232 ~~~~~~--~~~~------~~~~~~~~~~dg~~~~~~P~~~--g~~~iG~t~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~  300 (501)
T 2qcu_A          232 SHIVVP--RVHT------QKQAYILQNEDKRIVFVIPWMD--EFSIIGTTDVEYKGDPKAVK-IEESEINYLLNVYNTHF  300 (501)
T ss_dssp             EEEEEE--CSSS------CSCEEEEECTTSCEEEEEEETT--TEEEEECCCEECCSCGGGCC-CCHHHHHHHHHHHHHHB
T ss_pred             EEEEEC--CCCC------CceEEEeecCCCCEEEEEEcCC--CcEEEcCCCCCCCCCcCCCC-CCHHHHHHHHHHHHHhc
Confidence            988776  2111      11222332 2345689999754  5555554321 111111111 11227889999999999


Q ss_pred             C-CCCCCCCCceeeeeeeeccCCCCeEEecCCCC---------CCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072          311 A-GRVDSSGPAATQLCMYSMTPDKDFVIDFLGGE---------LGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG  376 (413)
Q Consensus       311 p-~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~---------~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~  376 (413)
                      | .+.+. .++..|+|+||.++|+.|+++.++..         ..++++.++   |.|++.++.+|+.+++++++.
T Consensus       301 p~~l~~~-~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~---Gg~~t~~~~~Ae~~~~~~~~~  372 (501)
T 2qcu_A          301 KKQLSRD-DIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVF---GGKLTTYRKLAEHALEKLTPY  372 (501)
T ss_dssp             SSCCCGG-GCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEE---CCCGGGHHHHHHHHHHHHGGG
T ss_pred             CCCCCcc-cEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEe---CccccchHHHHHHHHHHHHHh
Confidence            9 67653 56789999999999999988877531         002233333   337999999999999999843

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.97  E-value=3.5e-29  Score=243.35  Aligned_cols=342  Identities=15%  Similarity=0.101  Sum_probs=221.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccC--CccccchHHHHHHHHHHHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+++..+  ++|..+.+.++....  ......+..++...+..+... .
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~--GtS~~s~gli~~g~ryl~~~~~~l~~~~~~e~~~l~~~-~  107 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAE--GTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGI-A  107 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTC--SGGGSSCSEECCCGGGGGGTCHHHHHHHHHHHHHHHHH-C
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC--CcccccccccccccchhhccChHHHHHHHHHHHHHHHh-C
Confidence            46899999999999999999999999999999987654  556666666654321  111223444444444333322 1


Q ss_pred             CeeEeeeeeee--eCCC-----ChHHH---HHHHHHHH---hCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeee
Q 015072           84 YKVYFKAHQFD--MGPS-----ENKSL---RSVIASCR---KNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVI  150 (413)
Q Consensus        84 ~~~~~~~~~~~--~~~~-----~~~~~---~~~~~~~~---~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  150 (413)
                      ..+....+.+.  +...     ....+   ....+.+.   ..+...+.++.+++.+.+|. +.......+++.+ ++.+
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~e~~~~~P~-l~~~~~~gg~~~~-dg~v  185 (571)
T 2rgh_A          108 PHIPKPDPMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPF-LKKEGLKGAGVYL-DFRN  185 (571)
T ss_dssp             TTSSEECCEEEEEESSSSSCSCCHHHHHHHHHHHHHHHTCSSSTTCCEEECHHHHHHHCTT-SCCTTEEEEEEEC-CEEC
T ss_pred             cccccccCceEEeecccccccccHHHHHHHHHHHHHHhhhhccCCCcEEECHHHHHHhCcC-CchhhceEEEEec-CCeE
Confidence            11112222221  1110     11111   12223332   34566789999999999998 5533344556665 4788


Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---Cc--cEEEeCeEEEcCCcChhhhhhhhcCCC-
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SG--EEFWGKKCVVTAGAWVGKLVKKISGLE-  224 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~vV~A~G~~~~~l~~~~~g~~-  224 (413)
                      +|.+++..+.+.+.+.|++|+++++|+++..  +++ ..+.|+..   ++  .+++||.||+|+|+|+..+.+.. +.. 
T Consensus       186 ~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~--~~~-~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~-g~~~  261 (571)
T 2rgh_A          186 NDARLVIDNIKKAAEDGAYLVSKMKAVGFLY--EGD-QIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLN-FTRP  261 (571)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSEEEEEEEE--ETT-EEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTC-CSSC
T ss_pred             chHHHHHHHHHHHHHcCCeEEeccEEEEEEE--eCC-EEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhh-ccCc
Confidence            9999999999999999999999999999998  632 33344421   23  26999999999999999887754 543 


Q ss_pred             --cceeEEEEEEEEEEecCCCccccccCCCCceEEec---CCCeeEecCCCCCCCeEEEEeCCC-CcCCCCCCCCCCCcc
Q 015072          225 --LPIQAVETSVCYWRIKEGDEADYAVGGDFPSFASY---GDPHVYGTPSLEYPGLIKIALHRG-YLCDPDRRPWGPGPL  298 (413)
Q Consensus       225 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~  298 (413)
                        .++.|.+|+++.++.....       ...+.+...   +.+.+|++|..   +.+.+|++.. ...++.... ...+.
T Consensus       262 ~~~~i~p~rG~~l~~~~~~~~-------~~~~~~~~~~~~dgr~~~~~P~~---~~~~iG~t~~~~~~~~~~~~-~~~~~  330 (571)
T 2rgh_A          262 VSPKMRPTKGIHLVVDAKKLP-------VPQPTYFDTGKQDGRMVFAIPRE---NKTYFGTTDTDYQGDFTDPK-VTQED  330 (571)
T ss_dssp             CCCCBCCEEEEEEEEEGGGSC-------CSSCEEEECSSSSSCEEEEEEET---TEEEECCCCEECCSCSSSCC-CCHHH
T ss_pred             cCceeeccceEEEEeccccCC-------CCcEEEEeccCCCCcEEEEEEcC---CeEEEcCCCcCCCCCcCCCC-CCHHH
Confidence              5699999999988632211       112444332   33468888873   4444544221 111111111 11227


Q ss_pred             hHHHHHHHHhhcCCC--CCCCCCceeeeeeeeccCCCC---------eEEecCCCCCCCCEEEEeCCCccccccchHHHH
Q 015072          299 LDSLKELIQGRFAGR--VDSSGPAATQLCMYSMTPDKD---------FVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGR  367 (413)
Q Consensus       299 ~~~l~~~~~~~~p~~--~~~~~~~~~~~g~~~~t~d~~---------p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~  367 (413)
                      ++.+.+.+.++||.+  .+ ..+...|+|+||.++|+.         |+|+...    +|++.++|  |. +|.++.+|+
T Consensus       331 ~~~ll~~~~~~~P~~~l~~-~~v~~~waG~Rp~~~d~~~~~~~~~r~~~i~~~~----~gl~~v~G--Gk-~Tt~r~~Ae  402 (571)
T 2rgh_A          331 VDYLLDVINHRYPEANITL-ADIEASWAGLRPLLIGNSGSPSTISRGSSLEREP----DGLLTLSG--GK-ITDYRKMAE  402 (571)
T ss_dssp             HHHHHHHHHHHSTTTCCCG-GGCCEEEEEEECCBCC-----------EEEEECT----TSCEEEEE--CC-GGGHHHHHH
T ss_pred             HHHHHHHHHHhcCccCCch-hceeEEeEEeeeccCCCCCCcccCCCCcEEecCC----CCeEEEeC--cc-hhhHHHHHH
Confidence            889999999999974  43 256789999999998753         7787533    78886554  22 999999999


Q ss_pred             HHHHHHHc
Q 015072          368 ILADLVLS  375 (413)
Q Consensus       368 ~~a~~i~~  375 (413)
                      .+++++++
T Consensus       403 ~~~~~i~~  410 (571)
T 2rgh_A          403 GALRLIRQ  410 (571)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998863

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.96  E-value=1.1e-27  Score=232.36  Aligned_cols=343  Identities=17%  Similarity=0.124  Sum_probs=208.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccC--CccccchHHHHHHHHHHHHHhc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESSLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   82 (413)
                      +.++||+|||||++|+++|+.|+++|++|+|+|+++..+  ++|..+.+.++....  ......+..+.......+.+..
T Consensus        16 ~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~--GtS~~ss~lihgG~ryl~~~~~~l~~e~~~e~~~l~~~a   93 (561)
T 3da1_A           16 EKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFAS--GTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYENA   93 (561)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTC--SGGGSSCCEECC---------------CHHHHHHHHHHC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC--CcccCCcCccccchHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence            346999999999999999999999999999999997664  444445555443221  1111122222222222222221


Q ss_pred             CCeeEeeeeeee-eCCC-Ch-----HHHHHHHHHHH--hCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHH
Q 015072           83 GYKVYFKAHQFD-MGPS-EN-----KSLRSVIASCR--KNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPT  153 (413)
Q Consensus        83 ~~~~~~~~~~~~-~~~~-~~-----~~~~~~~~~~~--~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  153 (413)
                      . .+......+. .... ..     .......+.+.  ......+.++..++...+|. +.......+++.+ ++.+++.
T Consensus        94 p-~l~~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~-l~~~~~~gg~~~~-dg~vd~~  170 (561)
T 3da1_A           94 P-HVTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPL-LRKENLKGGGIYV-EYRTDDA  170 (561)
T ss_dssp             T-TTCEEEEEEEEECC---------------------------CEEECHHHHHHHCTT-SCCTTCCEEEEEE-EEECCHH
T ss_pred             c-hhccccceeEeecCCccHHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCcc-CChhhceeEEEec-CceEcHH
Confidence            1 0001111000 0000 00     00001111111  11334678999999999997 5533345555555 4699999


Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---Cc--cEEEeCeEEEcCCcChhhhhhhhcCCC--cc
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SG--EEFWGKKCVVTAGAWVGKLVKKISGLE--LP  226 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~vV~A~G~~~~~l~~~~~g~~--~p  226 (413)
                      +++..+.+.+.+.|++++++++|++|..  +++ ..+.|++.   +|  .+++|+.||+|+|+|+..+.+.+ |..  .+
T Consensus       171 ~l~~~L~~~a~~~G~~i~~~~~V~~l~~--~~g-~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~-g~~~~~~  246 (561)
T 3da1_A          171 RLTLEIMKEAVARGAVALNYMKVESFIY--DQG-KVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKD-RSKHGKY  246 (561)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEE--ETT-EEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTT-TCCCSSE
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEE--cCC-eEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhc-CCCCCce
Confidence            9999999999999999999999999998  632 33345443   23  36999999999999999888776 654  68


Q ss_pred             eeEEEEEEEEEEecCCCccccccCCCCceEEe--cCCCeeEecCCCCCCCeEEEEeCCC-CcCCCCCCCCCCCcchHHHH
Q 015072          227 IQAVETSVCYWRIKEGDEADYAVGGDFPSFAS--YGDPHVYGTPSLEYPGLIKIALHRG-YLCDPDRRPWGPGPLLDSLK  303 (413)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  303 (413)
                      +.|.+|+++.+......       ...+.+..  .+.+.+|++|. +  |.+.+|++.. ...++.... ...+.++.++
T Consensus       247 v~p~kG~~lvl~~~~~~-------~~~~~~~~~~~dgr~v~~iP~-~--g~~~iGtT~~~~~~~~~~~~-~t~~~i~~ll  315 (561)
T 3da1_A          247 LKLSKGVHLVVDQSRFP-------LRQAVYFDTESDGRMIFAIPR-E--GKTYIGTTDTFYDKDIASPR-MTVEDRDYIL  315 (561)
T ss_dssp             EEEEEEEEEEEEGGGSC-------CSSEEEECCSSSCCCEEEEEE-T--TEEEECCCCEEECSCTTCCC-CCHHHHHHHH
T ss_pred             EEeccEEEEEECCccCC-------CceEEEeccCCCCcEEEEEec-C--CCEEEcCCCCccCCCcCCCC-CCHHHHHHHH
Confidence            99999999887633211       11233322  23445788887 3  5555554321 111111111 1222788999


Q ss_pred             HHHHhhcCCCC--CCCCCceeeeeeeeccCC---------CCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072          304 ELIQGRFAGRV--DSSGPAATQLCMYSMTPD---------KDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADL  372 (413)
Q Consensus       304 ~~~~~~~p~~~--~~~~~~~~~~g~~~~t~d---------~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~  372 (413)
                      +.++++||.+.  . ..++..|+|+||.+.|         +..+|...+    ++++.++|  |. +|.++.+|+.++++
T Consensus       316 ~~~~~~~P~l~~~~-~~v~~~~aGlRPl~~~~~~~~~~~sR~~~i~~~~----~gli~i~G--gk-~Tt~r~mAe~~~d~  387 (561)
T 3da1_A          316 AAANYMFPSLRLTA-DDVESSWAGLRPLIHEEGKKASEISRKDEIFFSD----SGLISIAG--GK-LTGYRKMAERTVDA  387 (561)
T ss_dssp             HHHHHHCTTCCCCT-TTEEEEEEEEEEEEEC-----------CCEEECS----SCCEEECC--CC-STTHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCh-hhEEEEeEEeccccCCCCCCccccccceEEEecC----CCeEEEeC--Ch-hhhHHHHHHHHHHH
Confidence            99999999876  3 3577899999999765         234443332    66666664  44 99999999999998


Q ss_pred             HHc
Q 015072          373 VLS  375 (413)
Q Consensus       373 i~~  375 (413)
                      +.+
T Consensus       388 ~~~  390 (561)
T 3da1_A          388 VAQ  390 (561)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.78  E-value=7.8e-17  Score=156.31  Aligned_cols=222  Identities=15%  Similarity=0.060  Sum_probs=118.8

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCC----cEEEEeCCc---cEEEeCeEEEcCCcChhhhhhhh
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRG----GVTVVTSSG---EEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~----~~~v~~~~g---~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ..++...+.+.|.+.+.+.|++++++++|++++.  +  ++    ++.+++.++   .+++||+||.|+|.++ .+.+.+
T Consensus       115 ~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~--~--~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S-~vR~~l  189 (535)
T 3ihg_A          115 AMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQ--H--DDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS-LVRESL  189 (535)
T ss_dssp             BCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE--E--CGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC-HHHHHT
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--C--CCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc-hHHHHc
Confidence            4556688889999999999999999999999998  6  33    677766554   5799999999999998 555555


Q ss_pred             cCCCcceeEEEEEEEEEEecCCCccccccCCCC-ceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcch
Q 015072          221 SGLELPIQAVETSVCYWRIKEGDEADYAVGGDF-PSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLL  299 (413)
Q Consensus       221 ~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  299 (413)
                       |+..+..+.....+.+........ +...... ..+....+...++.|.... +.+.....    .+++..+....-..
T Consensus       190 -gi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~p~~~~-~~~~~~~~----~~~~~~~~~~~~~~  262 (535)
T 3ihg_A          190 -GIGRYGHGTLTHMVGVIFDADLSG-IMEPGTTGWYYLHHPEFKGTFGPTDRP-DRHTLFVE----YDPDEGERPEDFTP  262 (535)
T ss_dssp             -TCCEEEEEEEEEEEEEEEECCGGG-TSCTTCCEEEEEECSSCEEEEEECSST-TEEEEEEE----ECTTTTCCGGGCCH
T ss_pred             -CCCcCCCCccceEEEEEEeccChh-hccCCceEEEEEECCCceEEEEEecCC-CEEEEEEe----eCccccCccccCCH
Confidence             666555554444433333222211 1111101 1122222233344444322 22222111    11111000000034


Q ss_pred             HHHHHHHHhhcCCCCCCCCCceeeeeee--------eccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHH
Q 015072          300 DSLKELIQGRFAGRVDSSGPAATQLCMY--------SMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILAD  371 (413)
Q Consensus       300 ~~l~~~~~~~~p~~~~~~~~~~~~~g~~--------~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~  371 (413)
                      +.+.+.+++.++....  ...-.+...+        .+..++..++|       +-.....-++|+|+.+|..-|..|+.
T Consensus       263 e~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~grv~LvG-------DAAH~~~P~~GqG~n~ai~DA~~La~  333 (535)
T 3ihg_A          263 QRCVELIGLALDAPEV--KPELVDIQGWEMAARIAERWREGRVFLAG-------DAAKVTPPTGGMSGNAAVADGFDLAW  333 (535)
T ss_dssp             HHHHHHHHHHHTCSSC--CCEEEEEEEEEEEEEEESCSEETTEEECT-------TTTEECCSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCC--ceeEEEeeEeeeeEEEECccccCCEEEEe-------cccccCCCccCCccccccccHHHHHH
Confidence            5566667776653221  1111122111        12334555555       44555666788888887776666665


Q ss_pred             HHH---cCCCCccccccccccc
Q 015072          372 LVL---SGEAQGVELRHFRIAR  390 (413)
Q Consensus       372 ~i~---~~~~~~~~~~~~~~~R  390 (413)
                      .|.   .+...+..++.|.-.|
T Consensus       334 ~La~~l~g~~~~~lL~~Ye~eR  355 (535)
T 3ihg_A          334 KLAAVLQGQAGAGLLDTYEDER  355 (535)
T ss_dssp             HHHHHHTTSSCTTHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHhhHHHH
Confidence            553   2433334466665555

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.78  E-value=1.4e-17  Score=156.85  Aligned_cols=209  Identities=11%  Similarity=-0.009  Sum_probs=118.3

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc--EEEeCeEEEcCCcChhhhhhhhcCCCc
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--EFWGKKCVVTAGAWVGKLVKKISGLEL  225 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~vV~A~G~~~~~l~~~~~g~~~  225 (413)
                      ..+++..+.+.|.+.+.+.|++++++++|+++..  +++...+.+.+.+|+  +++||.||.|+|.++ .+.+.+ +...
T Consensus       101 ~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~--~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s-~l~~~~-g~~~  176 (421)
T 3nix_A          101 WQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKF--FGTDSVTTIEDINGNKREIEARFIIDASGYGR-VIPRMF-GLDK  176 (421)
T ss_dssp             EECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEE--ETTEEEEEEEETTSCEEEEEEEEEEECCGGGC-HHHHHT-TCEE
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--eCCEEEEEEEcCCCCEEEEEcCEEEECCCCch-hhHHhc-CCCC
Confidence            5678899999999999999999999999999998  633234567778887  699999999999988 444444 6655


Q ss_pred             ceeEEEEEEEEEEecCCCcc-ccccCCCCceEE--ecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHH
Q 015072          226 PIQAVETSVCYWRIKEGDEA-DYAVGGDFPSFA--SYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSL  302 (413)
Q Consensus       226 p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (413)
                      |........+...+...... .+.. .......  .....++|.+|..+  +...++............    . ..+.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~P~~~--~~~~vg~~~~~~~~~~~~----~-~~~~~  248 (421)
T 3nix_A          177 PSGFESRRTLFTHIKDVKRPVAAEM-EGNRITAVVHKPKVWIWVIPFSN--GNTSVGFVGEPSYFDEYT----G-TPEER  248 (421)
T ss_dssp             CCSSCCCEEEEEEEECTTCCC-----CCSEEEEEEEETTEEEEEEECTT--SEEEEEEEECHHHHTTSC----S-CHHHH
T ss_pred             CCcCCCcEEEEEEECCCcCCCccCC-CCeEEEEEeCCCCEEEEEEEECC--CCEEEEEEecHHHhhhcC----C-CHHHH
Confidence            54433344443333332111 1111 1122222  22344677778654  433333211111000000    0 23333


Q ss_pred             HHHHHhhcCCCCCC------CCCceeeee----eeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHH
Q 015072          303 KELIQGRFAGRVDS------SGPAATQLC----MYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADL  372 (413)
Q Consensus       303 ~~~~~~~~p~~~~~------~~~~~~~~g----~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~  372 (413)
                      .+.+.+.+|.+.+.      ......+.+    ...+..++.+++|.-.       .....+.|+|+.+|...|..+|+.
T Consensus       249 l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa-------~~~~P~~G~G~~~A~~~a~~la~~  321 (421)
T 3nix_A          249 MRAMIANEGHIAERFKSEEFLFEPRTIEGYAISASKLYGDGFVLTGNAT-------EFLDPIFSSGATFAMESGSKGGKL  321 (421)
T ss_dssp             HHHHHHTCTTTHHHHTTCCBSSCCEEEECCCBEESCSEETTEEECGGGT-------CBCCSTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHhcCccccCceeecccceeeeeeccCCEEEecccc-------cccCCcccccHHHHHHHHHHHHHH
Confidence            33444445543211      011122211    2234456777777433       334567899999999999999988


Q ss_pred             HHc
Q 015072          373 VLS  375 (413)
Q Consensus       373 i~~  375 (413)
                      |.+
T Consensus       322 l~~  324 (421)
T 3nix_A          322 AVQ  324 (421)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.74  E-value=5.2e-17  Score=157.59  Aligned_cols=312  Identities=15%  Similarity=0.100  Sum_probs=159.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      +++||+|||||++|+++|+.|+++|++|+|||+.+.....+..                ..+...+.+.++++    ++.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~----------------~~l~~~s~~~l~~l----Gl~  107 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRA----------------GALHIRTVETLDLR----GLL  107 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSC----------------CCBCHHHHHHHHTT----TCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceE----------------EEECHHHHHHHHHc----CCh
Confidence            4589999999999999999999999999999998665311111                11222233332221    110


Q ss_pred             e-EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           86 V-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      - +...+ .......          +  .+.....++..+.          ..     ..+....++...+.+.|.+.+.
T Consensus       108 ~~l~~~~-~~~~~~~----------~--~~~~~~~~~~~~~----------~~-----~~~~~~~i~~~~l~~~L~~~a~  159 (570)
T 3fmw_A          108 DRFLEGT-QVAKGLP----------F--AGIFTQGLDFGLV----------DT-----RHPYTGLVPQSRTEALLAEHAR  159 (570)
T ss_dssp             HHHTTSC-CBCSBCC----------B--TTBCTTCCBGGGS----------CC-----SCCSBBCCCHHHHHHHHHHHHH
T ss_pred             HHHHhcC-cccCCce----------e--CCccccccccccc----------CC-----CCCeeEEeCHHHHHHHHHHHHH
Confidence            0 00000 0000000          0  0000001110000          00     0122345677889999999998


Q ss_pred             HcCCeEecCceEEEEEeeeccCCCcEEEEe--CCc-cEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecC
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRGGVTVVT--SSG-EEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKE  241 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g-~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~  241 (413)
                      +.|++|+++++|++++.  +  ++.+.|++  .+| ++++||+||.|+|.++ .+.+.+ |+..+..+.....+...+..
T Consensus       160 ~~gv~i~~~~~v~~l~~--~--~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S-~vR~~l-Gi~~~~~~~~~~~~~~~v~~  233 (570)
T 3fmw_A          160 EAGAEIPRGHEVTRLRQ--D--AEAVEVTVAGPSGPYPVRARYGVGCDGGRS-TVRRLA-ADRFPGTEATVRALIGYVTT  233 (570)
T ss_dssp             HHTEECCBSCEEEECCB--C--SSCEEEEEEETTEEEEEEESEEEECSCSSC-HHHHHT-TCCCCCCCCCEEEEEEECCC
T ss_pred             hCCCEEEeCCEEEEEEE--c--CCeEEEEEEeCCCcEEEEeCEEEEcCCCCc-hHHHHc-CCCCccceeeeEEEEEEEEe
Confidence            88999999999999988  6  45566665  778 5799999999999998 454544 77666555555554444332


Q ss_pred             CCccccccCCCCceEEecCCCeeEe-cCCCCCCC-eEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCC
Q 015072          242 GDEADYAVGGDFPSFASYGDPHVYG-TPSLEYPG-LIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGP  319 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~  319 (413)
                      .... +.    +. +.......+++ .|..+..- .+........   ..  +.......+++.+.+.+.++....... 
T Consensus       234 ~~~~-~~----~~-~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~---~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~-  301 (570)
T 3fmw_A          234 PERE-VP----RR-WERTPDGILVLAFPPEGGLGPGWSSSSTGHS---PA--ADEGPVTLEDLGAAVARVRGTPLTLTE-  301 (570)
T ss_dssp             CSCS-SC----CC-CCCCCSSCEEECCCC------CEEEEEESCC----------CCCCHHHHHHHTTSSSSCCCCCCS-
T ss_pred             cCCC-cc----eE-EEecCCEEEEEEeecCCCeEEEEEEEeCCCC---cc--ccccCCCHHHHHHHHHHHhhcccccce-
Confidence            2211 00    00 01111222333 46543211 1222221110   00  011111467777777777775432211 


Q ss_pred             ceeeeeeeec--------cCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc---CCCCccccccccc
Q 015072          320 AATQLCMYSM--------TPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS---GEAQGVELRHFRI  388 (413)
Q Consensus       320 ~~~~~g~~~~--------t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~---~~~~~~~~~~~~~  388 (413)
                      ...|...++.        ..++..++|       +-.....-++|+|+.+|..-|..|+..|..   +......++.|.-
T Consensus       302 ~~~~~~~~~~~~~~a~~~~~grv~LvG-------DAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~~~~~lL~~Ye~  374 (570)
T 3fmw_A          302 PVSWLSRFGDASRQAKRYRSGRVLLAG-------DAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHD  374 (570)
T ss_dssp             CCEEEEEECCCCEECSCSEETTEEECG-------GGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             eeeeeEEeecccccccccccCCEEEEE-------ecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            1114333322        123333444       334455567888888877766666555432   4333334566655


Q ss_pred             cc
Q 015072          389 AR  390 (413)
Q Consensus       389 ~R  390 (413)
                      .|
T Consensus       375 eR  376 (570)
T 3fmw_A          375 ER  376 (570)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.71  E-value=2.7e-15  Score=143.62  Aligned_cols=306  Identities=16%  Similarity=0.132  Sum_probs=159.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ++++||+|||||++|+++|+.|+++|++|+|||+.+.....+.    +            ..+...+.+.++++    |+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r----~------------~~l~~~~~~~l~~l----Gl   69 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESR----G------------LGFTARTMEVFDQR----GI   69 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCC----S------------EEECHHHHHHHHHT----TC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCc----e------------eEECHHHHHHHHHC----CC
Confidence            4679999999999999999999999999999999865422111    1            11222333333322    21


Q ss_pred             ee-Eeee---eeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHH
Q 015072           85 KV-YFKA---HQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        85 ~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      .- +...   ....+                 .+.   .++...    .+      ..     .+....++...+.+.|.
T Consensus        70 ~~~~~~~~~~~~~~~-----------------~~~---~~~~~~----~~------~~-----~~~~~~i~~~~l~~~L~  114 (499)
T 2qa2_A           70 LPAFGPVETSTQGHF-----------------GGR---PVDFGV----LE------GA-----HYGVKAVPQSTTESVLE  114 (499)
T ss_dssp             GGGGCSCCEESEEEE-----------------TTE---EEEGGG----ST------TC-----CCEEEEEEHHHHHHHHH
T ss_pred             HHHHHhcccccccee-----------------cce---eccccc----CC------CC-----CCceEecCHHHHHHHHH
Confidence            10 0000   00000                 000   000000    00      00     01123456678888999


Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc---EEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEE
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE---EFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYW  237 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~---~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~  237 (413)
                      +.+.+.|++++++++|++++.  +  ++.+.+++.+++   +++||+||.|+|.+|. +.+.+ |+..+-.......+..
T Consensus       115 ~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~-VR~~l-g~~~~~~~~~~~~~~~  188 (499)
T 2qa2_A          115 EWALGRGAELLRGHTVRALTD--E--GDHVVVEVEGPDGPRSLTTRYVVGCDGGRST-VRKAA-GFDFPGTSASREMFLA  188 (499)
T ss_dssp             HHHHHTTCEEEESCEEEEEEE--C--SSCEEEEEECSSCEEEEEEEEEEECCCTTCH-HHHHT-TCCCCEECCCCCEEEE
T ss_pred             HHHHhCCCEEEcCCEEEEEEE--e--CCEEEEEEEcCCCcEEEEeCEEEEccCcccH-HHHHc-CCCCCCCCCccEEEEE
Confidence            999889999999999999998  7  456777766653   6999999999999985 44444 6555433322222222


Q ss_pred             EecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCC
Q 015072          238 RIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSS  317 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~  317 (413)
                      .+.....    + ..+ .+....+..+++.|..+  +.+.+.....   +....++......+++.+.+.+.++..... 
T Consensus       189 ~v~~~~~----~-~~~-~~~~~~~g~~~~~P~~~--g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-  256 (499)
T 2qa2_A          189 DIRGCEI----T-PRP-IGETVPLGMVMSAPLGD--GVDRIIVCER---GAPARRRTGPPPYQEVAAAWQRLTGQDISH-  256 (499)
T ss_dssp             EEESCCC----C-CEE-EEEEETTEEEEEEECSS--SCEEEEEEET---TCCCCCCSSSCCHHHHHHHHHHHHSCCCTT-
T ss_pred             EEEECCC----C-cce-EEEECCCeEEEEEEcCC--CEEEEEEEec---CCCCccccCCCCHHHHHHHHHHHhCCCCCc-
Confidence            2221111    0 001 11222334456666643  4332222100   000001111114567777777777642211 


Q ss_pred             CCceeeeeeee--------ccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH---cCCCCccccccc
Q 015072          318 GPAATQLCMYS--------MTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL---SGEAQGVELRHF  386 (413)
Q Consensus       318 ~~~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~---~~~~~~~~~~~~  386 (413)
                       ....|...++        +..++..++|       +-.....-++|+|+.+|..-|..|+..|.   .|...+..++.|
T Consensus       257 -~~~~~~~~~~~~~~~a~~~~~grv~L~G-------DAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~~L~~Y  328 (499)
T 2qa2_A          257 -GEPVWVSAFGDPARQVSAYRRGRVLLAG-------DSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTY  328 (499)
T ss_dssp             -CEEEEEEEECCCEEECSCSEETTEEECG-------GGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCTHHHHHH
T ss_pred             -cceeEEEEEeCCcEEcccccCCCEEEEe-------cccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence             1112322221        1223344444       34455666789998888776665554432   244333456667


Q ss_pred             ccccc
Q 015072          387 RIARF  391 (413)
Q Consensus       387 ~~~R~  391 (413)
                      .-.|.
T Consensus       329 e~eR~  333 (499)
T 2qa2_A          329 HEERH  333 (499)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.71  E-value=4.6e-17  Score=158.22  Aligned_cols=209  Identities=13%  Similarity=0.059  Sum_probs=113.7

Q ss_pred             CCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-Cc--cEEEeCeEEEcCCcChhhhhhhhcC
Q 015072          146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-SG--EEFWGKKCVVTAGAWVGKLVKKISG  222 (413)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g--~~i~ad~vV~A~G~~~~~l~~~~~g  222 (413)
                      ....++...+.+.|.+.+.+.|++++++++|+++..  ++ +..+.|.+. +|  .+++||.||.|+|.++. +.+.+ +
T Consensus       121 ~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~--~~-g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~-lr~~l-g  195 (591)
T 3i3l_A          121 HAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDL--SD-PDRVVLTVRRGGESVTVESDFVIDAGGSGGP-ISRKL-G  195 (591)
T ss_dssp             CEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEC--CS-TTCEEEEEEETTEEEEEEESEEEECCGGGCH-HHHHH-T
T ss_pred             eeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cC-CCEEEEEEecCCceEEEEcCEEEECCCCcch-hHHHc-C
Confidence            345678899999999999999999999999999998  62 355667665 66  47999999999999774 54554 5


Q ss_pred             CCcceeEEEEEEEEEEecC--CCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchH
Q 015072          223 LELPIQAVETSVCYWRIKE--GDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLD  300 (413)
Q Consensus       223 ~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (413)
                      ...+........+......  ......   .............+|.+|..+  +.+.++..............    ..+
T Consensus       196 ~~~~~~~~~~~av~~~~~~~~~~~~~~---~~~~~~~~~~~G~~w~iPl~~--~~~sv~~~~~~~~~~~l~~~----~~~  266 (591)
T 3i3l_A          196 VRQYDEFYRNFAVWSYFKLKDPFEGDL---KGTTYSITFEDGWVWMIPIKD--DLYSVGLVVDRSKSAEVREQ----GAD  266 (591)
T ss_dssp             CEEEEEEEEEEEEEEEEECCCSCCSTT---TTCEEEEEETTEEEEEEECSS--SEEEEEEEEEGGGHHHHHHH----CHH
T ss_pred             CCCCCccccceEEEEEEecCccccCCC---CCceEEEEcCCcEEEEEECCC--CeEEEEEEcCHHHHhhhccC----CHH
Confidence            4333322333333222111  111111   001112223445677777653  43333221100000000000    112


Q ss_pred             HHHHHHHhhcCCC----CC---C--CCCceeeee-eeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHH
Q 015072          301 SLKELIQGRFAGR----VD---S--SGPAATQLC-MYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILA  370 (413)
Q Consensus       301 ~l~~~~~~~~p~~----~~---~--~~~~~~~~g-~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a  370 (413)
                      .+.+.+.+.+|.+    ..   .  ...+..|.+ ...+..++..+||--       ...+..+.|.|+.+|...|..+|
T Consensus       267 ~~~~~l~~~~p~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLIGDA-------Ah~~~Pl~GqGinlAl~dA~~LA  339 (591)
T 3i3l_A          267 AFYSSTLAKCAKAMDILGGAEQVDEVRIVQDWSYDTEVFSADRFFLCGDA-------ACFTDPLFSQGVHLASQSAVSAA  339 (591)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCEECSCCEEEEEEEEEESCSEETTEEECGGG-------TCBCCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHHhcCccccCceEecccccchhhcccCCEEEEccc-------cccCCCcccccHHHHHHHHHHHH
Confidence            2223332333221    10   0  112233444 234456677777732       33445678999999999998888


Q ss_pred             HHHHc
Q 015072          371 DLVLS  375 (413)
Q Consensus       371 ~~i~~  375 (413)
                      +.|..
T Consensus       340 ~~L~~  344 (591)
T 3i3l_A          340 AAIDR  344 (591)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88763

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.71  E-value=2.9e-16  Score=148.11  Aligned_cols=206  Identities=11%  Similarity=0.016  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChh-hhhhhhcCC--Cc---
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGL--EL---  225 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~--~~---  225 (413)
                      ..+.+.|.+.+++.|++|+++++|++|..  +  ++.+. |+++ |+++.||.||+|++++.. .++......  ..   
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~--~--~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~  270 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILI--E--NGKAAGIIAD-DRIHDADLVISNLGHAATAVLCSEALSKEADAAYF  270 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE--E--TTEEEEEEET-TEEEECSEEEECSCHHHHHHHTTTTCCTTTTHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEE--E--CCEEEEEEEC-CEEEECCEEEECCCHHHHHHhcCCcccccCCHHHH
Confidence            67888999999999999999999999998  6  34444 6665 667999999999999864 444321011  00   


Q ss_pred             ----ceeEEEEEEEEEEecCCCccccccCCCCceEEecC-CCe-eEecCC-----CCCCCeEEEEeCCCCcCCCCCCCCC
Q 015072          226 ----PIQAVETSVCYWRIKEGDEADYAVGGDFPSFASYG-DPH-VYGTPS-----LEYPGLIKIALHRGYLCDPDRRPWG  294 (413)
Q Consensus       226 ----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~p~-----~~~~g~~~~~~~~~~~~~~~~~~~~  294 (413)
                          .+.+.....+.+........      ....+.... ... .+..++     ....|.-.+..+.....+  ..+ .
T Consensus       271 ~~~~~~~~~~~~~v~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~~p~~ap~G~~~l~~~~~~~~~--~~~-~  341 (425)
T 3ka7_A          271 KMVGTLQPSAGIKICLAADEPLVG------HTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAPE--NVK-N  341 (425)
T ss_dssp             HHHHHCCCBEEEEEEEEESSCSSC------SSSEEECCSSSSEEEEECGGGTCGGGSCTTCEEEEEEEEECGG--GGG-G
T ss_pred             HHhhCcCCCceEEEEeecCCCccC------cCEEEECCChhhcceEEeccCCCCCcCCCCCeEEEEEeccccc--ccc-c
Confidence                11222233334433332110      011111111 111 112221     111232111111100000  000 0


Q ss_pred             CCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeec-cCCCCeEEecCCCCCCCCEEEEeCCC----ccccccchHHHHHH
Q 015072          295 PGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSM-TPDKDFVIDFLGGELGEDVVVAGGFS----GHGFKMAPVVGRIL  369 (413)
Q Consensus       295 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~-t~d~~p~ig~~~~~~~~~~~~~~G~~----~~G~~~a~~~a~~~  369 (413)
                      .++..+.+.+.+.+++|........+..|....|. ++............  +|+|+++.+.    |.|+.-+.+.|+.+
T Consensus       342 ~~~~~~~~~~~l~~~~p~~~~~~~~v~~~~~~~P~~~~~~~~~~~~~~p~--~gL~laG~~~~~~gg~gv~~~~~s~~~~  419 (425)
T 3ka7_A          342 LESEIEMGLEDLKEIFPGKRYEVLLIQSYHDEWPVNRAASGTDPGNETPF--SGLYVVGDGAKGKGGIEVEGVALGVMSV  419 (425)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCEEEEEEEEEBTTBCSBSSCTTCCCCSBCSS--BTEEECSTTSCCTTCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCceEEEEEEEECCCccccccccCCCCCCCCCc--CCeEEeCCccCCCCCCccHHHHHHHHHH
Confidence            01256788888999999743111112234332332 33322222222222  6899977653    57777788899999


Q ss_pred             HHHHH
Q 015072          370 ADLVL  374 (413)
Q Consensus       370 a~~i~  374 (413)
                      ++.|+
T Consensus       420 ~~~i~  424 (425)
T 3ka7_A          420 MEKVL  424 (425)
T ss_dssp             HHC--
T ss_pred             HHHhh
Confidence            98876

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.71  E-value=3.2e-16  Score=149.84  Aligned_cols=204  Identities=12%  Similarity=0.075  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcCC-----Ccce
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGL-----ELPI  227 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~-----~~p~  227 (413)
                      .+.+.|.+.+.+  ++|+++++|++|..  +  ++++.|++.+|+++.||+||+|+.++.. .++... ..     .++.
T Consensus       236 ~l~~~l~~~l~~--~~i~~~~~V~~i~~--~--~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~~-~~~~~~~~~~~  308 (470)
T 3i6d_A          236 TLVEEIEKQLKL--TKVYKGTKVTKLSH--S--GSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSEL-PAISHLKNMHS  308 (470)
T ss_dssp             HHHHHHHHTCCS--EEEECSCCEEEEEE--C--SSSEEEEESSSCEEEESEEEECSCHHHHHHHTTTS-TTHHHHHTCEE
T ss_pred             HHHHHHHHhcCC--CEEEeCCceEEEEE--c--CCeEEEEECCCCEEECCEEEECCCHHHHHHHcCCc-hhhHHHhcCCC
Confidence            455544443322  68999999999998  7  4568899999977999999999998753 333221 10     2234


Q ss_pred             eEEEEEEEEEEecCCC-ccccccCCCCceEEec-CCC-e----eEe---cCCCCCCCe-EEEEeCCCCcCCCCCCCCCCC
Q 015072          228 QAVETSVCYWRIKEGD-EADYAVGGDFPSFASY-GDP-H----VYG---TPSLEYPGL-IKIALHRGYLCDPDRRPWGPG  296 (413)
Q Consensus       228 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~-~----~~~---~p~~~~~g~-~~~~~~~~~~~~~~~~~~~~~  296 (413)
                      .+.....+.++  ... ....    ....+... ... .    .|.   .|.....+. +...... ........+...+
T Consensus       309 ~~~~~v~l~~~--~~~~~~~~----~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~  381 (470)
T 3i6d_A          309 TSVANVALGFP--EGSVQMEH----EGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVG-KAGDESIVDLSDN  381 (470)
T ss_dssp             EEEEEEEEEES--STTCCCSS----CSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEEC-CSSCCGGGTSCHH
T ss_pred             CceEEEEEEEC--chhcCCCC----CCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEEC-CCCCccccCCCHH
Confidence            44333333332  211 1000    01111111 110 0    110   011111121 2111111 1111111111222


Q ss_pred             cchHHHHHHHHhhcCCCCCCCC--Cceeeeeeee-ccCCCCeEEecC-----CCCCCCCEEEEeC-CCccccccchHHHH
Q 015072          297 PLLDSLKELIQGRFAGRVDSSG--PAATQLCMYS-MTPDKDFVIDFL-----GGELGEDVVVAGG-FSGHGFKMAPVVGR  367 (413)
Q Consensus       297 ~~~~~l~~~~~~~~p~~~~~~~--~~~~~~g~~~-~t~d~~p~ig~~-----~~~~~~~~~~~~G-~~~~G~~~a~~~a~  367 (413)
                      +..+.+.+.+.+++|...+. .  .+..|....| ++++..+.+..+     ...  ++||+++. +.|.|+.-|...|+
T Consensus       382 ~~~~~~~~~l~~~~g~~~~p-~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~--~~l~~aG~~~~g~gv~~a~~sG~  458 (470)
T 3i6d_A          382 DIINIVLEDLKKVMNINGEP-EMTCVTRWHESMPQYHVGHKQRIKELREALASAY--PGVYMTGASFEGVGIPDCIDQGK  458 (470)
T ss_dssp             HHHHHHHHHHGGGSCCCSCC-SEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHS--TTEEECSTTTSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCc-eEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeecCCCCCHHHHHHHHH
Confidence            37788888899998864431 1  2345655443 444432211110     012  68999887 67788888999999


Q ss_pred             HHHHHHH
Q 015072          368 ILADLVL  374 (413)
Q Consensus       368 ~~a~~i~  374 (413)
                      .+|+.|+
T Consensus       459 ~aA~~i~  465 (470)
T 3i6d_A          459 AAVSDAL  465 (470)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999887

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.71  E-value=3.1e-15  Score=143.28  Aligned_cols=307  Identities=16%  Similarity=0.154  Sum_probs=157.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      +.+++||+|||||++|+++|+.|+++|++|+|||+.+.....+.    +            ..+...+.+.+++    .|
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r----~------------~~l~~~~~~~l~~----lG   67 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESR----G------------LGFTARTMEVFDQ----RG   67 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCC----S------------EEECHHHHHHHHT----TT
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCC----c------------ceECHHHHHHHHH----CC
Confidence            45679999999999999999999999999999999865432111    1            1112223333322    12


Q ss_pred             Cee-Eeee---eeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           84 YKV-YFKA---HQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        84 ~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      +.- +...   ....+                 .+.   .++...    .+.      .     .+....++...+.+.|
T Consensus        68 l~~~~~~~~~~~~~~~-----------------~~~---~~~~~~----~~~------~-----~~~~~~i~~~~l~~~L  112 (500)
T 2qa1_A           68 ILPRFGEVETSTQGHF-----------------GGL---PIDFGV----LEG------A-----WQAAKTVPQSVTETHL  112 (500)
T ss_dssp             CGGGGCSCCBCCEEEE-----------------TTE---EEEGGG----STT------G-----GGCEEEEEHHHHHHHH
T ss_pred             CHHHHHhccccccccc-----------------cce---eccccc----CCC------C-----CCceeecCHHHHHHHH
Confidence            110 0000   00000                 000   000000    000      0     0112345567888899


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc---EEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEE
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE---EFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCY  236 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~---~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~  236 (413)
                      .+.+.+.|++++++++|++++.  +  ++.+.+++.+++   +++||+||.|+|.+|. +.+.+ |+..+-.......+.
T Consensus       113 ~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~-VR~~l-g~~~~~~~~~~~~~~  186 (500)
T 2qa1_A          113 EQWATGLGADIRRGHEVLSLTD--D--GAGVTVEVRGPEGKHTLRAAYLVGCDGGRSS-VRKAA-GFDFPGTAATMEMYL  186 (500)
T ss_dssp             HHHHHHTTCEEEETCEEEEEEE--E--TTEEEEEEEETTEEEEEEESEEEECCCTTCH-HHHHT-TCCCCEECCCCEEEE
T ss_pred             HHHHHHCCCEEECCcEEEEEEE--c--CCeEEEEEEcCCCCEEEEeCEEEECCCcchH-HHHHc-CCCcCCCccceEEEE
Confidence            9999889999999999999998  6  456677665553   6999999999999985 44444 665554333222222


Q ss_pred             EEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCC
Q 015072          237 WRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDS  316 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~  316 (413)
                      ..+.....    + ..+ .+....+..+++.|..+  +.+.+.....   +....++......+++.+.+.+.++.....
T Consensus       187 ~~~~~~~~----~-~~~-~~~~~~~g~~~~~p~~~--g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  255 (500)
T 2qa1_A          187 ADIKGVEL----Q-PRM-IGETLPGGMVMVGPLPG--GITRIIVCER---GTPPQRRETPPSWHEVADAWKRLTGDDIAH  255 (500)
T ss_dssp             EEEESCCC----C-CEE-EEEEETTEEEEEEEETT--TEEEEEEEET---TCCC-----CCCHHHHHHHHHHHHSCCCTT
T ss_pred             EEEEeCCC----C-Cce-EEEECCCcEEEEEEcCC--CEEEEEEEcC---CCCCccccCCCCHHHHHHHHHHhcCCCCCc
Confidence            22221111    0 001 11222234455666533  4332222110   000001111114566777777777642211


Q ss_pred             CCCceeeeeeee--------ccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHH---cCCCCcccccc
Q 015072          317 SGPAATQLCMYS--------MTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVL---SGEAQGVELRH  385 (413)
Q Consensus       317 ~~~~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~---~~~~~~~~~~~  385 (413)
                        ....|...++        +..++..++|       +-.....-++|+|+.+|..-|..|+..|.   .|...+..++.
T Consensus       256 --~~~~~~~~~~~~~~~a~~~~~grv~L~G-------DAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~~~~~~L~~  326 (500)
T 2qa1_A          256 --AEPVWVSAFGNATRQVTEYRRGRVILAG-------DSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDS  326 (500)
T ss_dssp             --SEEEEEEEEECCEEECSCSEETTEEECG-------GGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             --cceeEEEEeccCcEEccccccCCEEEEE-------ccccCCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence              1112322221        1223344444       34455566788888887776655544432   24443345666


Q ss_pred             cccccc
Q 015072          386 FRIARF  391 (413)
Q Consensus       386 ~~~~R~  391 (413)
                      |.-+|.
T Consensus       327 Y~~eR~  332 (500)
T 2qa1_A          327 YHSERH  332 (500)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766653

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.69  E-value=2.9e-16  Score=147.20  Aligned_cols=61  Identities=15%  Similarity=0.124  Sum_probs=52.6

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..++...+.+.|.+.+.+  ++|+++++|++++.  +  ++.+.+++.+|+++.||.||.|+|.++.
T Consensus       122 ~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          122 CPVSRAELQREMLDYWGR--DSVQFGKRVTRCEE--D--ADGVTVWFTDGSSASGDLLIAADGSHSA  182 (407)
T ss_dssp             EEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECCCTTCS
T ss_pred             EEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEe--c--CCcEEEEEcCCCEEeeCEEEECCCcChH
Confidence            456778888888888766  88999999999998  7  4678899999989999999999999875

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.69  E-value=1.6e-16  Score=148.35  Aligned_cols=200  Identities=16%  Similarity=0.113  Sum_probs=103.1

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE-eCCc--cEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV-TSSG--EEFWGKKCVVTAGAWVGKLVKKISGLE  224 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g--~~i~ad~vV~A~G~~~~~l~~~~~g~~  224 (413)
                      ..++...+.+.|.+.+.+.|++++++++|+++..  +++ ....+. ..++  .+++||.||.|+|.++. +.+.+ +..
T Consensus        97 ~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~--~~~-~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~-vr~~~-g~~  171 (397)
T 3oz2_A           97 YVLERDKFDKHLAALAAKAGADVWVKSPALGVIK--ENG-KVAGAKIRHNNEIVDVRAKMVIAADGFESE-FGRWA-GLK  171 (397)
T ss_dssp             EEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE--ETT-EEEEEEEEETTEEEEEEEEEEEECCCTTCH-HHHHH-TCG
T ss_pred             EEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee--ccc-eeeeeeecccccceEEEEeEEEeCCccccH-HHHHc-CCC
Confidence            3567788889999999999999999999999988  632 222222 1223  26899999999999874 43444 543


Q ss_pred             cceeEEEEEE--EEEEecC-CCccccccCCCCceE-Ee--cCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcc
Q 015072          225 LPIQAVETSV--CYWRIKE-GDEADYAVGGDFPSF-AS--YGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPL  298 (413)
Q Consensus       225 ~p~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  298 (413)
                      .+..+.....  ..+.... .....      ...+ ..  ....+.+..|..+  +...++...  ..+...    ....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~--~~~~vg~~~--~~~~~~----~~~~  237 (397)
T 3oz2_A          172 SVILARNDIISALQYRMINVDVDPD------YTDFYLGSIAPAGYIWVFPKGE--GMANVGIGS--SINWIH----NRFE  237 (397)
T ss_dssp             GGCCCGGGEEEEEEEEEESCCCCTT------EEEEECSTTSTTEEEEEEEEET--TEEEEEEEE--ETTTSC----SHHH
T ss_pred             cccccceeeeeeEEEEeeccccCcc------cceeeeeccCCCceEEEeeccc--ceeEEEEee--ccchhh----hhhh
Confidence            3322221111  1122111 11100      1111 00  1122344444432  322222100  000000    0012


Q ss_pred             hHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEE-------eCCCccccccchHHHHHHHH
Q 015072          299 LDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVA-------GGFSGHGFKMAPVVGRILAD  371 (413)
Q Consensus       299 ~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~-------~G~~~~G~~~a~~~a~~~a~  371 (413)
                      .....+.+.+..|.+.+. ..+..+.+..+......|..+       ++++++       ..++|.|+.+|...|+.+|+
T Consensus       238 ~~~~l~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-------~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~  309 (397)
T 3oz2_A          238 LKNYLDRFIENHPGLKKG-QDIQLVTGGVSVSKVKMPITM-------PGLMLVGDAARLIDPITGGGIANAIVSGMYAAQ  309 (397)
T ss_dssp             HHHHHHHHHHTCHHHHTS-EEEEEEEEEEECCCCCSCCEE-------TTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccccc-ceeeeeeccccccCcccceee-------eeEEEcccccccCCCCcchhHHHHHHHHHHHHH
Confidence            333334444445555542 345566676666554444433       455553       23578899998888777776


Q ss_pred             HHH
Q 015072          372 LVL  374 (413)
Q Consensus       372 ~i~  374 (413)
                      .|.
T Consensus       310 ~i~  312 (397)
T 3oz2_A          310 VTK  312 (397)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.68  E-value=8.7e-15  Score=138.90  Aligned_cols=200  Identities=17%  Similarity=0.054  Sum_probs=108.1

Q ss_pred             CeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCc--EEEEeC-Ccc--EEEeCeEEEcCCcChhhhhhhhc
Q 015072          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGG--VTVVTS-SGE--EFWGKKCVVTAGAWVGKLVKKIS  221 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~-~g~--~i~ad~vV~A~G~~~~~l~~~~~  221 (413)
                      ...++...+.+.|.+.+.+.|++++++++|+++..  +++ ..  +.+.+. +|+  +++||.||.|+|.++. +.+.+ 
T Consensus        94 ~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~--~~~-~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~-vr~~l-  168 (453)
T 3atr_A           94 GFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF--EDG-YVKGAVLFNRRTNEELTVYSKVVVEATGYSRS-FRSKL-  168 (453)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE--ETT-EEEEEEEEETTTTEEEEEECSEEEECCGGGCT-TGGGS-
T ss_pred             cEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE--ECC-EEEEEEEEEcCCCceEEEEcCEEEECcCCchh-hHHhc-
Confidence            35677889999999999999999999999999988  622 22  334333 665  7999999999999875 43444 


Q ss_pred             CCCcce----eE---EEEEEEEEEecCCCccccccCCCCc-eEEe---cCCCeeEecCCCCCCCeEEEEeCCCCcCCCCC
Q 015072          222 GLELPI----QA---VETSVCYWRIKEGDEADYAVGGDFP-SFAS---YGDPHVYGTPSLEYPGLIKIALHRGYLCDPDR  290 (413)
Q Consensus       222 g~~~p~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~  290 (413)
                      +...|.    .+   .......+.......     ...+. .+..   ..+.++++.|..+  +.+.++........+  
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~P~~~--~~~~vg~~~~~~~~~--  239 (453)
T 3atr_A          169 PPELPITEDLDDKDADVAYREVLLTKEDIE-----DHDYLRIFIDQETSPGGYWWYFPKGK--NKVNVGLGIQGGMGY--  239 (453)
T ss_dssp             CTTSGGGCCCCGGGEEEEEEEEEEESSCCT-----TTTEEEEECCTTTSTTSCEEEEEEET--TEEEEEEEEESSSCC--
T ss_pred             CCCCCcccCCCcccceeeeEEEEecCCCcc-----CCCeEEEEECCCCCCCcEEEEEECCC--CeEEEEEEecCCCCC--
Confidence            543321    11   111111222222110     00111 1111   1234566666533  333332211001111  


Q ss_pred             CCCCCCcchHHHHHHHHhhcCCCCCCCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeC--------CCccccccc
Q 015072          291 RPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGG--------FSGHGFKMA  362 (413)
Q Consensus       291 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G--------~~~~G~~~a  362 (413)
                        .   ...+.+.+.+.++.|.+.+. ..+..+.+..|..   .|    .+....+++++ .|        +.|.|+.+|
T Consensus       240 --~---~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~---~~----~~~~~~~~v~l-vGDAAh~~~P~~G~G~~~A  305 (453)
T 3atr_A          240 --P---SIHEYYKKYLDKYAPDVDKS-KLLVKGGALVPTR---RP----LYTMAWNGIIV-IGDSGFTVNPVHGGGKGSA  305 (453)
T ss_dssp             --C---CHHHHHHHHHHHHCTTEEEE-EEEEEEEEEEECS---SC----CSCSEETTEEE-CGGGGTCSCTTTCCCHHHH
T ss_pred             --C---CHHHHHHHHHHhhhhhcCCC-eEEeccceeccCC---CC----CCceecCCEEE-EeCcccCCCCCccccHHHH
Confidence              0   13445555565555655532 2344455555431   11    11111245544 44        789999999


Q ss_pred             hHHHHHHHHHHH
Q 015072          363 PVVGRILADLVL  374 (413)
Q Consensus       363 ~~~a~~~a~~i~  374 (413)
                      ...|..+|+.|.
T Consensus       306 i~da~~la~~l~  317 (453)
T 3atr_A          306 MISGYCAAKAIL  317 (453)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998888875

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.67  E-value=9.4e-17  Score=154.97  Aligned_cols=203  Identities=10%  Similarity=0.044  Sum_probs=115.7

Q ss_pred             CeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCc-
Q 015072          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLEL-  225 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~-  225 (413)
                      ...+++..+.+.|.+.+.+.|++++++ +|+++..  ++++..+.|++.+|++++||.||.|+|.++.-+...+ +... 
T Consensus       167 ~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~--~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~-g~~~~  242 (511)
T 2weu_A          167 AYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQ--DERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTL-GGRFQ  242 (511)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEE--CTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCT-CCCEE
T ss_pred             eEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEE--cCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHh-CCCCc
Confidence            456889999999999999999999999 9999988  6332346788888877999999999999885332322 4332 


Q ss_pred             ---ceeEEEEEE-EEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHH
Q 015072          226 ---PIQAVETSV-CYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDS  301 (413)
Q Consensus       226 ---p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (413)
                         +..+....+ ..+....  .....+   ...........+|.+|..+  +...+....     ..  .....+..+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~g~~~~~P~~~--~~~~g~~~~-----~~--~~~~~~~~~~  308 (511)
T 2weu_A          243 SFSDVLPNNRAVALRVPREN--DEDMRP---YTTATAMSAGWMWTIPLFK--RDGNGYVYS-----DE--FISPEEAERE  308 (511)
T ss_dssp             ECTTTCCCCEEEEEEEECSS--GGGCCS---SEEEEEETTEEEEEEECSS--EEEEEEEEC-----TT--TSCHHHHHHH
T ss_pred             cccccCcccceEEEEeccCC--CCCCCc---ceeceecCCCcEEEEECCC--ceEEEEEEC-----CC--CCCHHHHHHH
Confidence               112222222 2222111  100111   1111222334577777643  222211111     00  0111113333


Q ss_pred             HHHHHHhhcCCCCCCCCCceeeeeeeecc-CCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcC
Q 015072          302 LKELIQGRFAGRVDSSGPAATQLCMYSMT-PDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSG  376 (413)
Q Consensus       302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t-~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~  376 (413)
                      +.+.+ ...|.+.+ ...+..|.+.++.. .++.+++|-       -......+.|+|+.+|...|..+|+.|.++
T Consensus       309 l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~rv~liGD-------AAh~~~P~~g~G~~~a~~da~~La~~l~~~  375 (511)
T 2weu_A          309 LRSTV-APGRDDLE-ANHIQMRIGRNERTWINNCVAVGL-------SAAFVEPLESTGIFFIQHAIEQLVKHFPGE  375 (511)
T ss_dssp             HHHHH-CTTCTTSC-CEEEECCCEEESCSEETTEEECGG-------GTEECCGGGCCHHHHHHHHHHHHHHTCCCT
T ss_pred             HHHHh-Cccccccc-ceeEEeeccccccccCCCEEEEec-------hhhccCccccccHHHHHHHHHHHHHHhccC
Confidence            33332 12232322 12344556665533 467777773       334556778999999999999999998744

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.64  E-value=4.3e-15  Score=142.16  Aligned_cols=205  Identities=9%  Similarity=0.064  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh-hhhhhhhcCC----Cccee
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV-GKLVKKISGL----ELPIQ  228 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~-~~l~~~~~g~----~~p~~  228 (413)
                      .+.+.|.+.+.+  ++|+++++|++|..  +  ++++.|++.+| ++.||+||+|++++. ..++... ..    .++..
T Consensus       237 ~l~~~l~~~l~~--~~i~~~~~V~~i~~--~--~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~~~-~~~~~~~~~~~  308 (475)
T 3lov_A          237 SLIERLEEVLER--SEIRLETPLLAISR--E--DGRYRLKTDHG-PEYADYVLLTIPHPQVVQLLPDA-HLPELEQLTTH  308 (475)
T ss_dssp             HHHHHHHHHCSS--CEEESSCCCCEEEE--E--TTEEEEECTTC-CEEESEEEECSCHHHHHHHCTTS-CCHHHHTCCEE
T ss_pred             HHHHHHHhhccC--CEEEcCCeeeEEEE--e--CCEEEEEECCC-eEECCEEEECCCHHHHHHHcCcc-CHHHHhcCCCC
Confidence            444444443322  79999999999998  7  45688999888 599999999999876 3444332 11    24555


Q ss_pred             EEEEEEEEEEecCCCccccccCCCCceEEe-cCCC-ee----Ee---cCCCCC-CCeEEEEeCCCCcCCCCCCCCCCCcc
Q 015072          229 AVETSVCYWRIKEGDEADYAVGGDFPSFAS-YGDP-HV----YG---TPSLEY-PGLIKIALHRGYLCDPDRRPWGPGPL  298 (413)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~---~p~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  298 (413)
                      ++...++.++.+.  ....    ....+.. ..+. .+    |.   .|.... ..++.... . ........+...++.
T Consensus       309 ~~~~v~l~~~~~~--~~~~----~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~-~-~~~~~~~~~~~~e~~  380 (475)
T 3lov_A          309 STATVTMIFDQQQ--SLPI----EGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFV-G-RPGNDHLVHESDEVL  380 (475)
T ss_dssp             EEEEEEEEEECCS--SCSS----SSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEE-C-BTTBCGGGGSCHHHH
T ss_pred             eEEEEEEEECCcC--CCCC----CCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEe-C-CCCCCcccCCCHHHH
Confidence            6655555555222  1100    0111111 1111 01    10   011111 11121111 1 111111111122237


Q ss_pred             hHHHHHHHHhhcCCCCCC-CCCceeeeeeee-ccCCCCeE---Eec-C-CCCCCCCEEEEe-CCCccccccchHHHHHHH
Q 015072          299 LDSLKELIQGRFAGRVDS-SGPAATQLCMYS-MTPDKDFV---IDF-L-GGELGEDVVVAG-GFSGHGFKMAPVVGRILA  370 (413)
Q Consensus       299 ~~~l~~~~~~~~p~~~~~-~~~~~~~~g~~~-~t~d~~p~---ig~-~-~~~~~~~~~~~~-G~~~~G~~~a~~~a~~~a  370 (413)
                      .+.+.+.+.++++...+. ...+..|....| ++++....   +.+ + ...  +++|+++ .+.+.|+.-|...|+.+|
T Consensus       381 ~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~--~~l~~aG~~~~g~g~~~a~~sG~~aA  458 (475)
T 3lov_A          381 QQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQY--PGIYLAGLAYDGVGLPDCVASAKTMI  458 (475)
T ss_dssp             HHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHS--TTEEECSTTTSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEccCCCCCCHHHHHHHHHHHH
Confidence            788888899998753321 001334554444 45543211   111 1 012  6899887 567789999999999999


Q ss_pred             HHHHcC
Q 015072          371 DLVLSG  376 (413)
Q Consensus       371 ~~i~~~  376 (413)
                      +.|+..
T Consensus       459 ~~i~~~  464 (475)
T 3lov_A          459 ESIELE  464 (475)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            999843

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.64  E-value=3.7e-15  Score=143.59  Aligned_cols=175  Identities=21%  Similarity=0.266  Sum_probs=97.7

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (413)
                      |.+++.++||+|||||++|+++|+.|+++|++|+|||+.+..... .    +..+.+     ............++.+..
T Consensus         1 M~~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-~----g~~~~~-----~~~~~~l~~lgl~~~~~~   70 (512)
T 3e1t_A            1 MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ-I----GESLLP-----ATVHGICAMLGLTDEMKR   70 (512)
T ss_dssp             ----CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCC-S----CCBCCH-----HHHTTHHHHTTCHHHHHT
T ss_pred             CCCCCccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCC-C----CcccCc-----chHHHHHHHhCcHHHHHH
Confidence            554555699999999999999999999999999999998754211 0    000000     000000111111222211


Q ss_pred             hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHH
Q 015072           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                       .+... .....+.+.....             .....          +..    ..   .........++...+.+.|.
T Consensus        71 -~~~~~-~~~~~~~~~~~~~-------------~~~~~----------~~~----~~---~~~~~~~~~v~r~~l~~~L~  118 (512)
T 3e1t_A           71 -AGFPI-KRGGTFRWGKEPE-------------PWTFG----------FTR----HP---DDPYGFAYQVERARFDDMLL  118 (512)
T ss_dssp             -TTCCE-ECEEEEECSSCSS-------------CEEEE----------SSS----SS---SSTTCCEEBCCHHHHHHHHH
T ss_pred             -cCCcc-ccCceEEecCCcc-------------ccccc----------ccc----CC---CCCcceeeEecHHHHHHHHH
Confidence             11111 1111111110000             00000          000    00   00011234577889999999


Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEeCCcc--EEEeCeEEEcCCcChhhhhhhh
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGE--EFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +.+.+.|++++++++|++|..  +++. .++.+.+.+|+  +++||.||.|+|.++. +.+.+
T Consensus       119 ~~a~~~Gv~i~~~~~V~~v~~--~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~-vr~~l  178 (512)
T 3e1t_A          119 RNSERKGVDVRERHEVIDVLF--EGERAVGVRYRNTEGVELMAHARFIVDASGNRTR-VSQAV  178 (512)
T ss_dssp             HHHHHTTCEEESSCEEEEEEE--ETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS-SGGGT
T ss_pred             HHHHhCCCEEEcCCEEEEEEE--ECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH-HHHHc
Confidence            999999999999999999998  6321 13556666774  7999999999999874 44444

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.64  E-value=6e-15  Score=141.24  Aligned_cols=213  Identities=14%  Similarity=0.075  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcC------CCc
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISG------LEL  225 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g------~~~  225 (413)
                      ..+.+.|.+.+.+.|++|+++++|++|..  +++ +.+.|++.++ ++.||+||+|++++.. .+++....      ..+
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~--~~~-~~~~v~~~~~-~~~ad~vv~a~p~~~~~~ll~~~~~~~~~~l~~~  309 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSL--QAE-GRWKVSLRDS-SLEADHVISAIPASVLSELLPAEAAPLARALSAI  309 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEE--CGG-GCEEEECSSC-EEEESEEEECSCHHHHHHHSCGGGHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEE--cCC-ceEEEEECCe-EEEcCEEEECCCHHHHHHhccccCHHHHHHHhcC
Confidence            47888899999889999999999999998  622 3378876544 5999999999998753 33322100      012


Q ss_pred             ceeEEEEEEEEEEecCCCccccccCCCCceEEec-C-CCee----Ee---cCCCC---CCCeEEEEeCCCCc--CCCCCC
Q 015072          226 PIQAVETSVCYWRIKEGDEADYAVGGDFPSFASY-G-DPHV----YG---TPSLE---YPGLIKIALHRGYL--CDPDRR  291 (413)
Q Consensus       226 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~----~~---~p~~~---~~g~~~~~~~~~~~--~~~~~~  291 (413)
                      +..+....  .+..+...   + +...+ .+... . +..+    |.   .|...   ...++.....+.+.  ......
T Consensus       310 ~~~~~~~v--~l~~~~~~---~-~~~~~-g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~  382 (477)
T 3nks_A          310 TAVSVAVV--NLQYQGAH---L-PVQGF-GHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGC  382 (477)
T ss_dssp             CEEEEEEE--EEEETTCC---C-SSCSS-EEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSC
T ss_pred             CCCcEEEE--EEEECCCC---C-CCCCc-eEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccC
Confidence            33333222  22222211   1 00001 11100 0 0000    00   01000   01111111100000  000000


Q ss_pred             CCCCCcchHHHHHHHHhhcCCCCCCC-CCceeee-eeeeccCCCCeEEecCCCC---CCCCEEEEeC-CCccccccchHH
Q 015072          292 PWGPGPLLDSLKELIQGRFAGRVDSS-GPAATQL-CMYSMTPDKDFVIDFLGGE---LGEDVVVAGG-FSGHGFKMAPVV  365 (413)
Q Consensus       292 ~~~~~~~~~~l~~~~~~~~p~~~~~~-~~~~~~~-g~~~~t~d~~p~ig~~~~~---~~~~~~~~~G-~~~~G~~~a~~~  365 (413)
                      +...++..+.+.+.+.++++...+.. ..+..|- ++-.++++..+.++.+...   ..+++++++. +.|.|+.-+...
T Consensus       383 ~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G~gv~~a~~s  462 (477)
T 3nks_A          383 VLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEGVAVNDCIES  462 (477)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSCCSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCCcHHHHHHH
Confidence            01122266777778888886433210 0112333 4444566665543322110   0157888765 678899999999


Q ss_pred             HHHHHHHHHcC
Q 015072          366 GRILADLVLSG  376 (413)
Q Consensus       366 a~~~a~~i~~~  376 (413)
                      |+.+|+.|+..
T Consensus       463 g~~aA~~il~~  473 (477)
T 3nks_A          463 GRQAAVSVLGT  473 (477)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999999843

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.63  E-value=5.4e-15  Score=137.85  Aligned_cols=158  Identities=18%  Similarity=0.238  Sum_probs=96.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcc-eecccCCc-cc----cchHHHHHHHHHH
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT-IRATYPED-YY----HPMVLESSLLWEQ   77 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~-~~~~~~~~-~~----~~~~~~~~~~~~~   77 (413)
                      +++++||+|||||++|+++|+.|+++|++|+|+|+.+..++.....+...+ +....... .+    ..+.....     
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l-----   98 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSAL-----   98 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHH-----
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHH-----
Confidence            345689999999999999999999999999999998876432111111111 11100000 00    00000000     


Q ss_pred             HHHhcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072           78 AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                        ...                   ...+....+...+++.....                 ....+.    ...+..+.+
T Consensus        99 --~~~-------------------~~~~~~~~~~~~Gi~~~~~~-----------------~g~~~~----~~~~~~l~~  136 (417)
T 3v76_A           99 --ARY-------------------RPQDFVALVERHGIGWHEKT-----------------LGQLFC----DHSAKDIIR  136 (417)
T ss_dssp             --HHS-------------------CHHHHHHHHHHTTCCEEECS-----------------TTEEEE----SSCHHHHHH
T ss_pred             --Hhc-------------------CHHHHHHHHHHcCCCcEEee-----------------CCEEee----CCCHHHHHH
Confidence              000                   01223333444444321111                 011121    234578889


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .|.+.+++.|++++++++|++|..  +  ++.+.|.+.+| +++||.||+|+|.++
T Consensus       137 ~L~~~l~~~Gv~i~~~~~V~~i~~--~--~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          137 MLMAEMKEAGVQLRLETSIGEVER--T--ASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEE--E--TTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEE--e--CCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            999999999999999999999988  6  45688888888 599999999999997

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.61  E-value=2.7e-14  Score=139.18  Aligned_cols=65  Identities=17%  Similarity=0.121  Sum_probs=51.7

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC------Cc---------cEEEeCeEEEcCCcC
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS------SG---------EEFWGKKCVVTAGAW  212 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~------~g---------~~i~ad~vV~A~G~~  212 (413)
                      ..++...+.+.|.+.+++.|++|+++++|+++..  ++++..+.|.+.      +|         .+++||.||.|+|.+
T Consensus       139 ~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~--~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~  216 (584)
T 2gmh_A          139 YVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILF--HEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCH  216 (584)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEE--CTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTT
T ss_pred             EEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEE--cCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCC
Confidence            4566788999999999999999999999999998  632223346654      33         579999999999999


Q ss_pred             hh
Q 015072          213 VG  214 (413)
Q Consensus       213 ~~  214 (413)
                      +.
T Consensus       217 S~  218 (584)
T 2gmh_A          217 GH  218 (584)
T ss_dssp             CH
T ss_pred             ch
Confidence            75

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.59  E-value=5.3e-14  Score=130.42  Aligned_cols=65  Identities=15%  Similarity=0.103  Sum_probs=54.2

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ..++...+.+.|.+.+.+.|++++++++|+++..  +   +  .|++.+|+++++|.||.|+|.++. +.+.+
T Consensus       102 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~---~--~v~~~~g~~~~ad~vV~AdG~~s~-vr~~l  166 (379)
T 3alj_A          102 RIMTRSHLHDALVNRARALGVDISVNSEAVAADP--V---G--RLTLQTGEVLEADLIVGADGVGSK-VRDSI  166 (379)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--T---T--EEEETTSCEEECSEEEECCCTTCH-HHHHH
T ss_pred             EEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--C---C--EEEECCCCEEEcCEEEECCCccHH-HHHHh
Confidence            4567788999999999999999999999999977  4   2  677788888999999999999885 44444

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.59  E-value=6.1e-15  Score=137.81  Aligned_cols=71  Identities=10%  Similarity=-0.011  Sum_probs=58.4

Q ss_pred             eeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcE--EEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCC
Q 015072          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGV--TVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLE  224 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~--~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~  224 (413)
                      ..++...+.+.|.+.+.+. |++++++++|+++..  +  ++.+  .|++.+|+++++|.||.|+|.++. +.+.+ +..
T Consensus       102 ~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~--~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~-vr~~l-g~~  175 (399)
T 2x3n_A          102 ILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQR--D--ERHAIDQVRLNDGRVLRPRVVVGADGIASY-VRRRL-LDI  175 (399)
T ss_dssp             EECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEE--C--TTSCEEEEEETTSCEEEEEEEEECCCTTCH-HHHHT-SCC
T ss_pred             ccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEE--c--CCceEEEEEECCCCEEECCEEEECCCCChH-HHHHh-CCC
Confidence            4567889999999999887 899999999999998  6  3456  788888888999999999999986 44444 543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.59  E-value=5.2e-15  Score=143.45  Aligned_cols=214  Identities=8%  Similarity=-0.031  Sum_probs=114.6

Q ss_pred             ecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCC
Q 015072          144 TELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGL  223 (413)
Q Consensus       144 ~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~  223 (413)
                      .+..+.+++..+.+.|.+.+.+.|++++.+ +|+++..  ++++..+.|.+.+|++++||.||.|+|.++.-+...+ +.
T Consensus       156 ~~~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~--~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~l-g~  231 (538)
T 2aqj_A          156 MSHAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRL--NNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQAL-KE  231 (538)
T ss_dssp             SCCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEE--CTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCT-CC
T ss_pred             CCccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEE--cCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHh-CC
Confidence            344577899999999999999999999988 8999988  6332346788888877999999999999885332222 43


Q ss_pred             Ccc----eeEEEEEEEEEEecCCCc-cccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcc
Q 015072          224 ELP----IQAVETSVCYWRIKEGDE-ADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPL  298 (413)
Q Consensus       224 ~~p----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  298 (413)
                      ..+    ..+... .+.+....... ..+.+   ...........++.+|..+  +...+....     .   ++.   .
T Consensus       232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~p~~~--~~~~g~v~~-----~---~~~---~  294 (538)
T 2aqj_A          232 PFIDMSDYLLCDS-AVASAVPNDDARDGVEP---YTSSIAMNSGWTWKIPMLG--RFGSGYVFS-----S---HFT---S  294 (538)
T ss_dssp             CEEECTTTCCCCE-EEEEEEECCHHHHCCCS---SEEEEECSSEEEEEEEETT--EEEEEEEEC-----T---TTS---C
T ss_pred             Cccccccccccce-EEEEecccCCcccCCCC---ceeeeecCCceEEEecCCC--ceEEEEEEc-----C---CCC---C
Confidence            211    011111 12222221100 00110   1111122234566666543  222211111     0   011   1


Q ss_pred             hHHHHHHHHhhcCC--CCCCCCCceeeeeeee-ccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHc
Q 015072          299 LDSLKELIQGRFAG--RVDSSGPAATQLCMYS-MTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLS  375 (413)
Q Consensus       299 ~~~l~~~~~~~~p~--~~~~~~~~~~~~g~~~-~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~  375 (413)
                      -+...+.+.+.++.  +.+ ...+..+.+.++ +..++..++|       +-......++|.|+.+|...|..|++.|.+
T Consensus       295 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~grvvliG-------DAAh~~~P~~gqG~~~a~~da~~La~~L~~  366 (538)
T 2aqj_A          295 RDQATADFLKLWGLSDNQP-LNQIKFRVGRNKRAWVNNCVSIG-------LSSCFLEPLESTGIYFIYAALYQLVKHFPD  366 (538)
T ss_dssp             HHHHHHHHHHHHTCCTTCC-CEEEECCCEEESCSEETTEEECG-------GGTEECCGGGSCHHHHHHHHHHHHHHTCCB
T ss_pred             hHHHHHHHHHHhcCCCCCC-ceEEeeccccccccccCCEEEEc-------ccccccCcchhccHHHHHHHHHHHHHHhhc
Confidence            12333444455532  221 112223334332 2233444444       333445667899999999999999998874


Q ss_pred             CCCCccccccc
Q 015072          376 GEAQGVELRHF  386 (413)
Q Consensus       376 ~~~~~~~~~~~  386 (413)
                      +...+..++.|
T Consensus       367 ~~~~~~~l~~Y  377 (538)
T 2aqj_A          367 TSFDPRLSDAF  377 (538)
T ss_dssp             TTCCHHHHHHH
T ss_pred             cCCCHHHHHHH
Confidence            43322234455

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.58  E-value=1.6e-14  Score=140.21  Aligned_cols=66  Identities=17%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             CeeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhh
Q 015072          147 GGVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~  215 (413)
                      ...+++..+.+.|.+.+++. |++++++ +|+++..  ++++..+.|++.+|+++.||.||.|+|.++.-
T Consensus       188 ~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~--~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          188 AWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQR--DANGNIESVRTATGRVFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             EEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEE--CTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred             ceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEE--cCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence            45688899999999999988 9999999 9999987  63323467888888889999999999998854

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.57  E-value=9.1e-14  Score=137.11  Aligned_cols=74  Identities=19%  Similarity=0.153  Sum_probs=55.0

Q ss_pred             eeecHHHHHHHHHHHHHHcCC--eEecCceEEEEEeeeccC--CCcEEEEeC------Cc--cEEEeCeEEEcCCcChhh
Q 015072          148 GVIKPTKAVSMFQTLAIKNGA--VLRDNTEVKTVLKVKDDV--RGGVTVVTS------SG--EEFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv--~i~~~~~V~~i~~~~~~~--~~~~~v~~~------~g--~~i~ad~vV~A~G~~~~~  215 (413)
                      ..++...+.+.|.+.+.+.|+  +++++++|++++.  +++  ...+.++..      +|  ++++||+||.|+|.++. 
T Consensus       136 ~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~--~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~-  212 (639)
T 2dkh_A          136 VILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKV--DHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN-  212 (639)
T ss_dssp             EECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEE--CTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH-
T ss_pred             EeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEE--CCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH-
Confidence            345667888999999999887  9999999999998  632  124666543      45  47999999999999985 


Q ss_pred             hhhhhcCCCc
Q 015072          216 LVKKISGLEL  225 (413)
Q Consensus       216 l~~~~~g~~~  225 (413)
                      +.+.+ |+..
T Consensus       213 vR~~l-g~~~  221 (639)
T 2dkh_A          213 VRRAI-GRQL  221 (639)
T ss_dssp             HHHHT-TCCC
T ss_pred             HHHHh-CCCC
Confidence            44444 5543

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.54  E-value=3.6e-13  Score=130.60  Aligned_cols=70  Identities=14%  Similarity=0.223  Sum_probs=50.5

Q ss_pred             eeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---c--cEEEeCeEEEcCCcChhhhhhhhcC
Q 015072          148 GVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---G--EEFWGKKCVVTAGAWVGKLVKKISG  222 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~vV~A~G~~~~~l~~~~~g  222 (413)
                      ..++...+.+.|.+.+.+.   ++++++|++++.  +  ++.+.+++.+   |  ++++||+||.|+|.++. +.+.+ |
T Consensus       133 ~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~--~--~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~~l-g  203 (549)
T 2r0c_A          133 AICPQHWLAPLLAEAVGER---LRTRSRLDSFEQ--R--DDHVRATITDLRTGATRAVHARYLVACDGASSP-TRKAL-G  203 (549)
T ss_dssp             EECCHHHHHHHHHHHHGGG---EECSEEEEEEEE--C--SSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH-HHHHH-T
T ss_pred             cccCHHHHHHHHHHHHHHh---cccCcEEEEEEE--e--CCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH-HHHHc-C
Confidence            3445566777888877765   888999999998  7  3456665433   5  36999999999999985 44444 6


Q ss_pred             CCcc
Q 015072          223 LELP  226 (413)
Q Consensus       223 ~~~p  226 (413)
                      +..+
T Consensus       204 ~~~~  207 (549)
T 2r0c_A          204 IDAP  207 (549)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5444

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.54  E-value=8.4e-14  Score=131.73  Aligned_cols=167  Identities=23%  Similarity=0.238  Sum_probs=97.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      +++||+|||||++|+++|+.|+++|.+|+|||+.+..++.....+...+.   +...  ..        +..+...+...
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~---~~~~--~~--------~~~~~~~~~~~   91 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCN---VTNR--LP--------LDEIVKHIPGN   91 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCC---CEEC--SC--------HHHHHHTCTBT
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCcee---ccCc--cc--------HHHHHHHhccC
Confidence            45899999999999999999999999999999987653211111110000   0000  00        01111111100


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      .......+..  ..   ..+..+++...|+++....                 ....+...   ..+..+++.|.+.+++
T Consensus        92 ~~~~~~~~~~--~~---~~~~~~~~~~~G~~~~~~~-----------------~g~~~p~~---~~~~~l~~~L~~~~~~  146 (447)
T 2i0z_A           92 GRFLYSAFSI--FN---NEDIITFFENLGVKLKEED-----------------HGRMFPVS---NKAQSVVDALLTRLKD  146 (447)
T ss_dssp             GGGGHHHHHH--SC---HHHHHHHHHHTTCCEEECG-----------------GGEEEETT---CCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHh--cC---HHHHHHHHHhcCCceEEee-----------------CCEEECCC---CCHHHHHHHHHHHHHH
Confidence            0000000000  00   1223334444444322111                 00111111   1357888999999999


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .|++++++++|++|..  ++ +..+.|++.+|++++||.||+|+|.++
T Consensus       147 ~GV~i~~~~~V~~i~~--~~-~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          147 LGVKIRTNTPVETIEY--EN-GQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             TTCEEECSCCEEEEEE--ET-TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             CCCEEEeCcEEEEEEe--cC-CcEEEEEECCCCEEECCEEEECCCCCc
Confidence            9999999999999997  62 233778888887799999999999998

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.54  E-value=6.5e-14  Score=131.77  Aligned_cols=57  Identities=12%  Similarity=0.148  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +..+.+.|.+.+++.|++|+++++|++|..  +  ++.+ |. .+|+++.||.||+|+|++..
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~--~--~~~v-V~-~~g~~~~ad~Vv~a~~~~~~  244 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINI--E--EKKV-YT-RDNEEYSFDVAISNVGVRET  244 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEET--T--TTEE-EE-TTCCEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE--E--CCEE-EE-eCCcEEEeCEEEECCCHHHH
Confidence            378889999999999999999999999998  7  4556 64 56667999999999998753

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.53  E-value=3.1e-13  Score=131.66  Aligned_cols=189  Identities=17%  Similarity=0.155  Sum_probs=107.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+.+..++  .+....+.+........ ...+......++..+.+....
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg--~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~  197 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG--NSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQ  197 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT--TGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC--cccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            468999999999999999999999999999999987753  33333333322111000 000000011122222221100


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      ..  ....+..   -.+...+.++++...|+++..+.      .++.     ......+.+.++.+.+..+++.|.+.++
T Consensus       198 ~~--~~~~~~~---~~~~~~~~i~~l~~~Gv~~~~~~------~~~g-----~~~~r~~~~~~~~~~~~~l~~~L~~~~~  261 (566)
T 1qo8_A          198 QN--DIKLVTI---LAEQSADGVQWLESLGANLDDLK------RSGG-----ARVDRTHRPHGGKSSGPEIIDTLRKAAK  261 (566)
T ss_dssp             CS--CHHHHHH---HHHHHHHHHHHHHHTTCCCCEEE------CCTT-----CSSCCEEECSSSSCHHHHHHHHHHHHHH
T ss_pred             CC--CHHHHHH---HHhccHHHHHHHHhcCCcccccc------ccCC-----CCCCceeecCCCCCCHHHHHHHHHHHHH
Confidence            00  0000000   00011233445555666543211      0111     1111223444555667889999999999


Q ss_pred             HcCCeEecCceEEEEEeeeccCCC--cEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +.|++|+++++|++|..  ++++.  ++.+.+.+|+  ++.||.||+|+|.++.
T Consensus       262 ~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          262 EQGIDTRLNSRVVKLVV--NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HTTCCEECSEEEEEEEE--CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             hcCCEEEeCCEEEEEEE--CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            99999999999999998  73122  2444444675  6899999999999985

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.53  E-value=1.2e-13  Score=128.27  Aligned_cols=158  Identities=16%  Similarity=0.123  Sum_probs=95.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcc-eecccCCc-c-c---cchHHHHHHHHHHHH
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT-IRATYPED-Y-Y---HPMVLESSLLWEQAQ   79 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~-~~~~~~~~-~-~---~~~~~~~~~~~~~~~   79 (413)
                      +++||+|||||++|+++|+.|+++|.+|+|+|+.+..++.....+...+ +......+ . +   ..+.....       
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l-------   75 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSAL-------   75 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHH-------
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHH-------
Confidence            3699999999999999999999999999999998765321110000000 01100000 0 0   00000000       


Q ss_pred             HhcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           80 SEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      ..                .   ...+..+++...|+++...+                 ...++ +..   ++..+.+.+
T Consensus        76 ~~----------------~---~~~~~~~~~~~~Gi~~~~~~-----------------~g~~~-p~~---~~~~l~~~L  115 (401)
T 2gqf_A           76 AR----------------Y---TNWDFISLVAEQGITYHEKE-----------------LGQLF-CDE---GAEQIVEML  115 (401)
T ss_dssp             HH----------------S---CHHHHHHHHHHTTCCEEECS-----------------TTEEE-ETT---CTHHHHHHH
T ss_pred             Hh----------------C---CHHHHHHHHHhCCCceEECc-----------------CCEEc-cCC---CHHHHHHHH
Confidence            00                0   01223334444554422111                 01112 211   567888999


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccC--CCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDV--RGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~--~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .+.+++.|++++++++|+++..  +++  ++.+.|+++++ +++||.||+|+|.++
T Consensus       116 ~~~~~~~Gv~i~~~~~v~~i~~--~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          116 KSECDKYGAKILLRSEVSQVER--IQNDEKVRFVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEE--CCSCSSCCEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHCCCEEEeCCEEEEEEc--ccCcCCCeEEEEECCC-EEECCEEEECCCCcc
Confidence            9999999999999999999987  511  13478888777 599999999999998

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.52  E-value=2.2e-12  Score=127.47  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=33.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHH-----cCCcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAK-----RGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~-----~g~~V~lvE~~~~~   42 (413)
                      .++||+|||||++|+++|..|++     .|++|+|||+.+..
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            36899999999999999999999     99999999997543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.51  E-value=7.8e-13  Score=129.01  Aligned_cols=182  Identities=19%  Similarity=0.189  Sum_probs=104.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+.+..++.  +....+.+........ ...+......++.++.+....
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~--s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~  202 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN--AKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQN  202 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTT--GGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc--hhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            3689999999999999999999999999999999876532  2222222221111000 000000001112222111000


Q ss_pred             eeEeeeeeeeeCCCChHH-------HHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKS-------LRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                                  ..+.+.       ..+.++++...|+++..+.      ..+.     ......+.+..+...+..+.+
T Consensus       203 ------------~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~g-----~~~~r~~~~~~g~~~g~~l~~  259 (571)
T 1y0p_A          203 ------------INDPALVKVLSSHSKDSVDWMTAMGADLTDVG------MMGG-----ASVNRAHRPTGGAGVGAHVVQ  259 (571)
T ss_dssp             ------------CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEE------CCTT-----CSSCCEEESTTTCCHHHHHHH
T ss_pred             ------------CCCHHHHHHHHHccHHHHHHHHhcCCCCccCc------ccCC-----cCCCeeEecCCCCCCHHHHHH
Confidence                        001111       1233444555565442110      0111     111123334444456788999


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCc--EEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGG--VTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .|.+.+++.|++|+++++|++|..  ++++..  +.+...+|+  ++.||.||+|+|.++.
T Consensus       260 ~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          260 VLYDNAVKRNIDLRMNTRGIEVLK--DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEE--CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHhcCCEEEeCCEeeEeEE--cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence            999999999999999999999998  631222  444444665  6899999999999875

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.51  E-value=5.3e-13  Score=128.51  Aligned_cols=58  Identities=16%  Similarity=0.048  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+.+.|.+.+++.|++|+++++|++|..  ++ +....|++++|+++.||.||.+++.+.
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~--~~-~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMET--TG-NKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE--ET-TEEEEEEETTSCEEECSCEEECCC---
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEe--eC-CeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            67889999999999999999999999999  73 244568899999999999999999875

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.48  E-value=5.5e-13  Score=124.89  Aligned_cols=62  Identities=13%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             eeecHHHHHHHHHHHHHH-cC-CeEecCceEEEEEeeeccCCCcEEEEeCC---c--cEEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIK-NG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSS---G--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~-~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~vV~A~G~~~~  214 (413)
                      ..++...+.+.|.+.+.+ .| ++++++++|+++..  +   +++.+.+.+   |  ++++||.||.|+|.++.
T Consensus       102 ~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~--~---~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          102 YSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE--R---DGRVLIGARDGHGKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE--E---TTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             eeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec--C---CccEEEEecCCCCCceEEecCEEEECCCccch
Confidence            345667888888888876 36 58999999999987  4   345565543   6  47999999999999885

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.46  E-value=9.4e-13  Score=126.10  Aligned_cols=165  Identities=21%  Similarity=0.233  Sum_probs=99.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHh--cC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSE--IG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   83 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+++..+++.                      ......|....-.  ..
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~----------------------~~~~g~w~~~~~~~~~~  163 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT----------------------KDTFGFWRKRTLNPESN  163 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHH----------------------HHHHHHHHHCCCCTTSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccc----------------------cchhccccccccccccc
Confidence            34899999999999999999999999999999986432100                      0000011100000  00


Q ss_pred             Cee------EeeeeeeeeCCCC-hHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHH
Q 015072           84 YKV------YFKAHQFDMGPSE-NKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAV  156 (413)
Q Consensus        84 ~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      ..+      .+..+.+...... ........+.+...+.+......        .            .+..+......+.
T Consensus       164 i~~g~gGag~~sdgkl~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~--------~------------~p~~G~~~~~~l~  223 (549)
T 3nlc_A          164 VQFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYV--------S------------KPHIGTFKLVTMI  223 (549)
T ss_dssp             SSSSTTGGGTTSCCCCCCCSCCTTCHHHHHHHHHHHTTCCGGGGTB--------S------------SCCCCHHHHHHHH
T ss_pred             ceeccCCcccccCCceEEEeccccccHHHHHHHHHHcCCCceEeec--------c------------ccccccchHHHHH
Confidence            000      0000111110001 11113344444555554322210        0            1222344557788


Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~  215 (413)
                      +.|.+.+++.|++++++++|++|..  +++ ..+.|++.+|+++.||.||+|+|.++..
T Consensus       224 ~~L~~~l~~~Gv~I~~~t~V~~I~~--~~~-~v~gV~l~~G~~i~Ad~VVlA~G~~s~~  279 (549)
T 3nlc_A          224 EKMRATIIELGGEIRFSTRVDDLHM--EDG-QITGVTLSNGEEIKSRHVVLAVGHSARD  279 (549)
T ss_dssp             HHHHHHHHHTTCEEESSCCEEEEEE--SSS-BEEEEEETTSCEEECSCEEECCCTTCHH
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEE--eCC-EEEEEEECCCCEEECCEEEECCCCChhh
Confidence            8999999999999999999999988  622 3456888888889999999999999863

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.46  E-value=1.8e-12  Score=126.22  Aligned_cols=199  Identities=16%  Similarity=0.155  Sum_probs=105.9

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (413)
                      |.....++||+|||||++|+++|+.|+++|.+|+||||....++  .+....|.+.............    ..+.+..+
T Consensus         1 m~~~~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g--~s~~a~GGi~~~~~~~~~ds~~----~~~~d~~~   74 (588)
T 2wdq_A            1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS--HTVSAQGGITVALGNTHEDNWE----WHMYDTVK   74 (588)
T ss_dssp             CCSCEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGS--GGGGCCSCEECCCCSSSCCCHH----HHHHHHHH
T ss_pred             CCCccccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC--cchhhCCccEEcCCCCCCCCHH----HHHHHHHH
Confidence            55455679999999999999999999999999999999876532  2222222222211110000000    01111111


Q ss_pred             hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCC----CCeEEEEecCCeeecHHHH
Q 015072           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIP----ENWVGVTTELGGVIKPTKA  155 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~  155 (413)
                      ......  ....+..   -.+...+.++++...|+++.......+. ..++. ....    ......+ ..+  ..+..+
T Consensus        75 ~g~~~~--d~~~v~~---~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g-~~~~~~~~~~~r~~~-~~d--~~g~~l  145 (588)
T 2wdq_A           75 GSDYIG--DQDAIEY---MCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGG-QSKNFGGEQAARTAA-AAD--RTGHAL  145 (588)
T ss_dssp             HTTTCS--CHHHHHH---HHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTT-CBSTTTCSBCCCEEC-STT--CHHHHH
T ss_pred             hcCCCC--CHHHHHH---HHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCC-ccccccccCcceEEE-cCC--CCHHHH
Confidence            100000  0000000   0001123445556667765443221110 00111 0000    0011111 111  134678


Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCc--EEEEe-CCcc--EEEeCeEEEcCCcChhhh
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGG--VTVVT-SSGE--EFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~--~~v~~-~~g~--~i~ad~vV~A~G~~~~~l  216 (413)
                      ++.|.+.+.+.|++|+++++|++|..  ++++..  +.+.. .+|+  ++.|+.||+|||.++..+
T Consensus       146 ~~~L~~~~~~~gv~i~~~~~v~~L~~--~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~y  209 (588)
T 2wdq_A          146 LHTLYQQNLKNHTTIFSEWYALDLVK--NQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIY  209 (588)
T ss_dssp             HHHHHHHHHHTTCEEEETEEEEEEEE--CTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGGS
T ss_pred             HHHHHHHHHhCCCEEEeCcEEEEEEE--CCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcccc
Confidence            88999999999999999999999988  622233  33332 5565  689999999999988643

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.46  E-value=8.4e-13  Score=127.53  Aligned_cols=65  Identities=14%  Similarity=0.153  Sum_probs=53.6

Q ss_pred             CeeecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          147 GGVIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ...+++..+.+.|.+.+.+ .|++++++ +|+++..  ++++..+.|++.+|++++||.||.|+|.++.
T Consensus       169 ~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~--~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          169 GYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIIN--NQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             EEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEE--CTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             eEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEe--cCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            4567889999999999998 89999998 6999988  6322345677777767999999999999875

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.45  E-value=3.8e-12  Score=119.21  Aligned_cols=63  Identities=13%  Similarity=0.078  Sum_probs=46.3

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +-..+.+.|.+.   .+..++++++|++++.  .+ ++.+.++++||++++||.||-|.|.+|. +.+.+
T Consensus       110 ~R~~L~~~L~~~---~~~~v~~~~~v~~~~~--~~-~~~v~v~~~dG~~~~adlvVgADG~~S~-vR~~l  172 (412)
T 4hb9_A          110 SRTELKEILNKG---LANTIQWNKTFVRYEH--IE-NGGIKIFFADGSHENVDVLVGADGSNSK-VRKQY  172 (412)
T ss_dssp             EHHHHHHHHHTT---CTTTEECSCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECCCTTCH-HHHHH
T ss_pred             eHHHHHHHHHhh---ccceEEEEEEEEeeeE--cC-CCeEEEEECCCCEEEeeEEEECCCCCcc-hHHHh
Confidence            334455544433   3457889999999987  53 3568899999999999999999999884 43444

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.45  E-value=3.6e-13  Score=129.54  Aligned_cols=59  Identities=19%  Similarity=0.189  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEE--EeCCcc-EEEeC-eEEEcCCcChh
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTV--VTSSGE-EFWGK-KCVVTAGAWVG  214 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~-~i~ad-~vV~A~G~~~~  214 (413)
                      .+++.|.+.+++.|++|+++++|++|..  ++++..+.|  ...++. +++|+ .||+|||.|+.
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~--~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~  265 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVT--DDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAY  265 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEE--CTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEE--CCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhh
Confidence            7889999999999999999999999998  632233333  333222 68995 99999999973

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.45  E-value=5.8e-13  Score=128.63  Aligned_cols=49  Identities=27%  Similarity=0.359  Sum_probs=41.6

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~~~~~~s~   49 (413)
                      |+...+++||+|||||++||++|++|+++ |++|+|+|+.+..||...|.
T Consensus         4 Ms~p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~   53 (513)
T 4gde_A            4 MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTD   53 (513)
T ss_dssp             --CCSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEE
T ss_pred             CCCCCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeE
Confidence            44445579999999999999999999985 99999999999998877663

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.44  E-value=2.9e-13  Score=126.15  Aligned_cols=67  Identities=12%  Similarity=-0.101  Sum_probs=51.6

Q ss_pred             ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEeCeEEEcCCcChhhhhhhh
Q 015072          150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ++...+.+.|.+.+.+.|++++++++|+++..  +++ +.+.|++ .+|+  +++||.||.|+|.++. +.+.+
T Consensus       100 ~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~--~~~-~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~-vr~~l  169 (394)
T 1k0i_A          100 YGQTEVTRDLMEAREACGATTVYQAAEVRLHD--LQG-ERPYVTFERDGERLRLDCDYIAGCDGFHGI-SRQSI  169 (394)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSCEEEEEEC--TTS-SSCEEEEEETTEEEEEECSEEEECCCTTCS-TGGGS
T ss_pred             echHHHHHHHHHHHHhcCCeEEeceeEEEEEE--ecC-CceEEEEecCCcEEEEEeCEEEECCCCCcH-HHHhc
Confidence            34467778888888888999999999999988  632 3456665 5776  6999999999999885 43433

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.42  E-value=6.5e-13  Score=130.44  Aligned_cols=193  Identities=15%  Similarity=0.172  Sum_probs=100.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc---ccchHHHHHHHHHHHHHh
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY---YHPMVLESSLLWEQAQSE   81 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   81 (413)
                      ..++||+|||||++|+++|+.|+++|.+|+||||....+  +.+....|.+........   ....    ...+.+..+.
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~--g~s~~a~GGi~a~~~~~~~g~~ds~----~~~~~dt~~~   76 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKR--SHSAAAQGGMQASLGNSKMSDGDNE----DLHFMDTVKG   76 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGG--SGGGGCCSCEECCCCCSGGGTTCCH----HHHHHHHHHH
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCC--CcccccCCCeEeccCCcccCCCCCH----HHHHHHHHHh
Confidence            346899999999999999999999999999999987653  222222222222111100   0000    0011111111


Q ss_pred             cCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccc-----------------cCHHHHHHhcCCcccCCCCeEEEEe
Q 015072           82 IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV-----------------LDCRQVLQKYSGRIEIPENWVGVTT  144 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----------------l~~~~~~~~~p~~~~~~~~~~~~~~  144 (413)
                      .+..+....... +    .....+.+.++...|+++..                 ++.+++...+..     ....+...
T Consensus        77 g~~~~d~~~v~~-~----~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~g~~~~~l~~~e~~~~~~~-----~~~gg~~~  146 (660)
T 2bs2_A           77 SDWGCDQKVARM-F----VNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHS-----RDFGGTKK  146 (660)
T ss_dssp             TTTCSCHHHHHH-H----HHHHHHHHHHHHHTTCCCCBCCSEEEECCCSSCCCEEEECGGGTTSBCC-----BCCTTCSS
T ss_pred             cCCCCCHHHHHH-H----HHHHHHHHHHHHHcCCCceecCCCcccccccccccccccchhhhhhhcc-----cccccccc
Confidence            110000000000 0    00012233444555554322                 222222111110     00001000


Q ss_pred             cCCee---ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEE-eCCcc--EEEeCeEEEcCCcChhh
Q 015072          145 ELGGV---IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVV-TSSGE--EFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       145 ~~~~~---~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~-~~~g~--~i~ad~vV~A~G~~~~~  215 (413)
                      +....   ..+..++..|.+.+.+.|++|++++.|++|..  +++. .++.+. +.+|+  .+.|+.||+|||+++..
T Consensus       147 ~R~~~~~d~tG~~l~~~L~~~a~~~gv~i~~~~~v~~L~~--~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          147 WRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIH--QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             CCEECSTTCHHHHHHHHHHHHHHHHTCEEECSEEEEEEEE--ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             ceeEeeCCCCHHHHHHHHHHHHHhCCCEEEECcEEEEEEe--cCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence            10000   12467889999999889999999999999987  6321 133333 25665  58999999999999853

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.41  E-value=6.8e-12  Score=116.95  Aligned_cols=58  Identities=10%  Similarity=-0.032  Sum_probs=47.1

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +...+.+.|.+.+  .|++++++++|+++..  +  ++.+.+++.+|+++++|.||.|+|.++.
T Consensus        97 ~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           97 SYDSIYGGLYELF--GPERYHTSKCLVGLSQ--D--SETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EHHHHHHHHHHHH--CSTTEETTCCEEEEEE--C--SSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             CHHHHHHHHHHhC--CCcEEEcCCEEEEEEe--c--CCEEEEEECCCCEEECCEEEECCCcchh
Confidence            3345666666554  5899999999999998  7  4568888888888999999999999885

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.41  E-value=2.4e-12  Score=125.31  Aligned_cols=189  Identities=17%  Similarity=0.191  Sum_probs=102.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCcc-ccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+.+..++.  +....+.+........ ...+......++.++.+. +.
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~--~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~-g~  201 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN--TKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKG-GR  201 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTT--GGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHH-TT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc--hhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHh-cC
Confidence            3579999999999999999999999999999999877532  2222222221111000 000000001122222211 10


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .. .....+...   .+.....++++...|+++..+.      .+..     ......+.+..+......+.+.|.+.++
T Consensus       202 ~~-~~~~~v~~~---~~~~~~~i~~l~~~Gv~~~~~~------~~gg-----~~~~r~~~~~~~~~~g~~l~~~L~~~~~  266 (572)
T 1d4d_A          202 NI-NDPELVKVL---ANNSSDSIDWLTSMGADMTDVG------RMGG-----ASVNRSHRPTGGAGVGAHVAQVLWDNAV  266 (572)
T ss_dssp             TC-SCHHHHHHH---HHTHHHHHHHHHHHTCCCCEEE------CCTT-----CSSCCEEESTTTCCHHHHHHHHHHHHHH
T ss_pred             CC-CCHHHHHHH---HHccHHHHHHHHhcCCcccccc------ccCC-----CcCCeeEecCCCCCCHHHHHHHHHHHHH
Confidence            00 000000000   0001223344444455432211      0111     0111122333344456788999999999


Q ss_pred             HcCCeEecCceEEEEEeeeccCCC--cEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +.|++|+++++|++|..  ++++.  ++.+.+.+|+  ++.||.||+|+|.++.
T Consensus       267 ~~gv~i~~~t~v~~l~~--~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          267 KRGTDIRLNSRVVRILE--DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HTTCEEESSEEEEEEEE--C--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HcCCeEEecCEEEEEEE--CCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            99999999999999988  63122  3444444664  6899999999999874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.41  E-value=1.3e-12  Score=119.95  Aligned_cols=65  Identities=9%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ....+.+.+.+.+++.|++++++++|+++..  +  ++.+. |+++++ ++.+|+||+|+|.++.+..+.+
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~--~--~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~  139 (357)
T 4a9w_A           74 ARAEVLAYLAQYEQKYALPVLRPIRVQRVSH--F--GERLRVVARDGR-QWLARAVISATGTWGEAYTPEY  139 (357)
T ss_dssp             BHHHHHHHHHHHHHHTTCCEECSCCEEEEEE--E--TTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCEEEcCCEEEEEEE--C--CCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCC
Confidence            3467778888888889999999999999998  6  45677 888888 5999999999999876544443

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.40  E-value=2.1e-12  Score=124.55  Aligned_cols=186  Identities=16%  Similarity=0.136  Sum_probs=88.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHH-HHHHHHHhcC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSL-LWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   83 (413)
                      ..++||+|||||++|+++|+.|++ |.+|+||||....+  +++....|.+......       ..+.+ .+.+..+...
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~--g~s~~a~Ggi~~~~~~-------~ds~~~~~~d~l~~g~   75 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTE--GSTFYAQGGIAAVFDE-------TDSIDSHVEDTLIAGA   75 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---------------CCS-------HHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCC--CChhhcCCCEEEecCC-------CCCHHHHHHHHHHhhc
Confidence            346899999999999999999999 99999999987654  3333333333322211       01111 1222221111


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccC----HHHH-HHhcCCcccCCCCeEEEEecCCeeecHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLD----CRQV-LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSM  158 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~----~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                      ..+  ....+..   -.....+.++++...|+++....    ..++ ...++. ....    ..+..  .-.....+++.
T Consensus        76 g~~--d~~~v~~---~~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg-~~~~----r~~~~--~d~~g~~l~~~  143 (540)
T 1chu_A           76 GIC--DRHAVEF---VASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGG-HSHR----RILHA--ADATGREVETT  143 (540)
T ss_dssp             TCC--CHHHHHH---HHHHHHHHHHHHHHTTCC---------------------------------------------CC
T ss_pred             ccC--CHHHHHH---HHHhHHHHHHHHHHcCCCcccCcccCcCCccccccccc-cccC----eEEEe--CCCCHHHHHHH
Confidence            000  0000000   00011234555666777654332    1111 011111 0000    00110  01123567777


Q ss_pred             HHHHHHH-cCCeEecCceEEEEEeeeccCC------Cc--EEEEe-CCcc--EEEeCeEEEcCCcChh
Q 015072          159 FQTLAIK-NGAVLRDNTEVKTVLKVKDDVR------GG--VTVVT-SSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~------~~--~~v~~-~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      |.+.+++ .|++|++++.|++|..  ++++      ..  +.+.. .+|+  ++.|+.||+|+|.++.
T Consensus       144 L~~~~~~~~gv~i~~~~~v~~L~~--~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          144 LVSKALNHPNIRVLERTNAVDLIV--SDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEE--GGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHcCCCCEEEeCcEEEEEEE--cCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            8888888 6999999999999987  5322      22  33332 3564  6899999999999885

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.40  E-value=4.2e-12  Score=123.82  Aligned_cols=193  Identities=13%  Similarity=0.166  Sum_probs=102.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||||||||++|+++|+.|+++|.+|+||||....+  +.+....|.+...........+.    ..+.+..+.... 
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~--g~s~~a~GGi~a~~~~~~~ds~~----~~~~dtl~~g~~-   89 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTR--SHTVAAQGGINAALGNMEDDNWR----WHFYDTVKGSDW-   89 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGG--SGGGGCCSCEECCCCSSSCCCHH----HHHHHHHHHTTT-
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC--CCchhhCCCcEecCCCCCCCCHH----HHHHHHHHhcCC-
Confidence            35899999999999999999999999999999987653  23222233332221110000000    011111111000 


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCC-----CCeEEEEecCCeeecHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIP-----ENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                       ......+..   -.....+.+.++...|+++......++. ..++. ...+     ......+.. +  .....+++.|
T Consensus        90 -l~d~~~v~~---l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~g~~~~~~R~~~~~-d--~tG~~l~~~L  161 (621)
T 2h88_A           90 -LGDQDAIHY---MTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGG-QSLQFGKGGQAHRCCCVA-D--RTGHSLLHTL  161 (621)
T ss_dssp             -CSCHHHHHH---HHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTT-CBSTTTTSCBCCCEECST-T--CHHHHHHHHH
T ss_pred             -CCCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCceeccccCc-ccccccCCCcceeEEEec-C--CCHHHHHHHH
Confidence             000000000   0001123445566677765443221111 01111 1100     000111111 0  1346788999


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEe-CCcc--EEEeCeEEEcCCcChhh
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVT-SSGE--EFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~-~~g~--~i~ad~vV~A~G~~~~~  215 (413)
                      .+.+.+.|++|++++.|++|..  +++. .++.+.. .+|+  .+.|+.||+|||+++..
T Consensus       162 ~~~~~~~gv~i~~~~~v~~Li~--~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          162 YGRSLRYDTSYFVEYFALDLLM--ENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHTTSCCEEEETEEEEEEEE--ETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHhCCCEEEEceEEEEEEE--ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            9998889999999999999988  6321 1233333 4665  68999999999999863

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.39  E-value=4.8e-12  Score=115.52  Aligned_cols=160  Identities=16%  Similarity=0.105  Sum_probs=87.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---cCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAK---RGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~---~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      +||+|||||++|+++|+.|++   +|++|+|+||.+..+++.++......     .                      +.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~-----~----------------------~~   54 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHN-----P----------------------QC   54 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSC-----T----------------------TC
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCC-----C----------------------Cc
Confidence            589999999999999999999   89999999998776554333211000     0                      00


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .+......+.........+....+.+...+....+...      ... ...... ...+....+.   ..+.+.+.+.  
T Consensus        55 ~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~-~~~~~~-~~~~~~~~g~---~~l~~~l~~~--  121 (342)
T 3qj4_A           55 TADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSP------IEG-MVMKEG-DCNFVAPQGI---SSIIKHYLKE--  121 (342)
T ss_dssp             EEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSC------EET-CCC--C-CEEEECTTCT---THHHHHHHHH--
T ss_pred             eEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchh------hcc-eeccCC-ccceecCCCH---HHHHHHHHHh--
Confidence            00000000111111111222223333222221111000      000 000000 1122222222   3455544443  


Q ss_pred             HcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                       .|++|+++++|++|..  +  ++++.|++.+|+++.+|.||+|+.+.
T Consensus       122 -~g~~i~~~~~V~~i~~--~--~~~~~v~~~~g~~~~ad~vV~A~p~~  164 (342)
T 3qj4_A          122 -SGAEVYFRHRVTQINL--R--DDKWEVSKQTGSPEQFDLIVLTMPVP  164 (342)
T ss_dssp             -HTCEEESSCCEEEEEE--C--SSSEEEEESSSCCEEESEEEECSCHH
T ss_pred             -cCCEEEeCCEEEEEEE--c--CCEEEEEECCCCEEEcCEEEECCCHH
Confidence             3899999999999998  7  46788988888778999999999853

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.38  E-value=4.9e-12  Score=119.79  Aligned_cols=61  Identities=16%  Similarity=0.054  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeecc-CCCcEEEEeCCccEEEeCeEEEcCCcChhhh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD-VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l  216 (413)
                      ..+.+.|.+.+++.|++|+++++|++|..  +. ++..+.|++ +|+++.||.||+|+|.|+..+
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~~l  303 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLY--KKDTGKFEGVKT-KLGTFKAPLVIADPTYFPEKC  303 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEE--ETTTTEEEEEEE-TTEEEECSCEEECGGGCGGGE
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEE--ECCCCeEEEEEE-CCeEEECCEEEECCCccchhh
Confidence            57889999999999999999999999988  61 223345666 466799999999999997644

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.36  E-value=1.1e-11  Score=109.88  Aligned_cols=38  Identities=39%  Similarity=0.502  Sum_probs=34.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~~   43 (413)
                      .++||+|||||++|+++|+.|+++ |.+|+|||+.+..+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~g   76 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPG   76 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence            358999999999999999999997 99999999987664

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.34  E-value=4e-11  Score=112.44  Aligned_cols=58  Identities=19%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      ..+.+.|.+.+++.|++|+++++|++|..  ++++..+.|++.+|++++||+||+|++.+
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~--d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVF--DDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEE--CTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEE--ecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            68899999999999999999999999987  53345677888888889999999999987

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.33  E-value=1.2e-11  Score=120.70  Aligned_cols=188  Identities=13%  Similarity=0.079  Sum_probs=99.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||||++|+++|+.|+++|  .+|+||||....++  .+....+.+...........      ..+.+......
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~--~s~~a~GGi~~~~~~~ds~~------~~~~d~~~~g~   75 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS--HTVAAEGGSAAVAQDHDSFE------YHFHDTVAGGD   75 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS--GGGGCCSCEECCCSTTCCHH------HHHHHHHHHTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCC--hHHHhcCccEEeCCCCCCHH------HHHHHHHHhcC
Confidence            3589999999999999999999999  99999999865532  22222222222111111110      01111111100


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      ..  .....+..   -.......++++...|+++.......+. ..++. ..   .....+. .+  .....+++.|.+.
T Consensus        76 ~~--~d~~~v~~---~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~---~~r~~~~-~d--~tg~~l~~~L~~~  143 (602)
T 1kf6_A           76 WL--CEQDVVDY---FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGG-MK---IERTWFA-AD--KTGFHMLHTLFQT  143 (602)
T ss_dssp             TC--SCHHHHHH---HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTT-CS---SCCEECS-TT--CHHHHHHHHHHHH
T ss_pred             CC--CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCcccccccCC-cc---CCeEEEc-CC--CCHHHHHHHHHHH
Confidence            00  00000000   0001123344555667654332211100 00111 00   0011111 11  1246788888888


Q ss_pred             HHHcC-CeEecCceEEEEEeeeccCC-CcEEEE-eCCcc--EEEeCeEEEcCCcChhh
Q 015072          163 AIKNG-AVLRDNTEVKTVLKVKDDVR-GGVTVV-TSSGE--EFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       163 ~~~~g-v~i~~~~~V~~i~~~~~~~~-~~~~v~-~~~g~--~i~ad~vV~A~G~~~~~  215 (413)
                      +.+.| +++++++.|++|..  +++. .++.+. +.+|+  .+.|+.||+|+|.++..
T Consensus       144 ~~~~gnv~i~~~~~v~~l~~--~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          144 SLQFPQIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HTTCTTEEEEETEEEEEEEE--ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred             HHhCCCcEEEeCCEEEEEEE--eCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence            88888 99999999999998  6321 123333 35676  69999999999999864

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.32  E-value=1.2e-11  Score=121.37  Aligned_cols=187  Identities=12%  Similarity=0.120  Sum_probs=100.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCCCCCCCc--ceecccCCccccchHHHHHHHHHH
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESR--TIRATYPEDYYHPMVLESSLLWEQ   77 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~------g~~V~lvE~~~~~~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   77 (413)
                      .++||||||||++|+++|+.|+++      |.+|+||||....+  +++.. .|  .+........       ....+..
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~--s~s~A-qG~~gi~a~l~~ds-------~e~~~~~   90 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLER--SGAVA-QGLSAINTYLGDNN-------ADDYVRM   90 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTT--CSTTT-TCEEEECCCCTTSC-------HHHHHHH
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCC--Ccccc-cCcchheeecCCCC-------HHHHHHH
Confidence            358999999999999999999998      99999999987653  22322 33  2222211100       0112222


Q ss_pred             HHHhc-CCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCcccc-CH-----HHHHHhcCCcccCCCCeEEEEecC---C
Q 015072           78 AQSEI-GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL-DC-----RQVLQKYSGRIEIPENWVGVTTEL---G  147 (413)
Q Consensus        78 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l-~~-----~~~~~~~p~~~~~~~~~~~~~~~~---~  147 (413)
                      ..... +..   ....+..   -.....+.+.++...|+++... ..     ......++. +....   +.....   .
T Consensus        91 ~~~~~~gl~---d~~~v~~---l~~~a~~~i~~L~~~Gv~f~~~~~~G~~~~g~~~~~fg~-~~~~g---g~~~~r~~~~  160 (662)
T 3gyx_A           91 VRTDLMGLV---REDLIYD---LGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGK-SLRNG---DKPVRSGRWQ  160 (662)
T ss_dssp             HHHHTTTCC---CHHHHHH---HHHHHHHHHHHHHHHTCCBCEECSSSCEECHHHHHHHTC-CTTTT---CCBCCSSTTC
T ss_pred             HHHhcCCCc---cHHHHHH---HHHHHHHHHHHHHHcCCCceecCCCCccccchhhhcccc-ccccC---ccccccceec
Confidence            21111 100   0000000   0001123344555667665433 10     111122222 11000   000000   1


Q ss_pred             eeecHHHHHHHHHHHHHHc--CCeEecCceEEEEEeeeccC--CCcEEE--E-eCCcc--EEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIKN--GAVLRDNTEVKTVLKVKDDV--RGGVTV--V-TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~--gv~i~~~~~V~~i~~~~~~~--~~~~~v--~-~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ..+....+.+.|.+.+++.  |++++.++.|++|..  +++  +..+.|  . ..+|+  .+.|+.||+|||+++.
T Consensus       161 ~~~~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~--~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          161 IMINGESYKVIVAEAAKNALGQDRIIERIFIVKLLL--DKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             EEEEETSHHHHHHHHHHHHHCTTTEECSEEECCCEE--CSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEE--eCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence            2234467788888888887  999999999999988  643  122333  2 24554  6899999999999875

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.32  E-value=1.1e-11  Score=116.89  Aligned_cols=41  Identities=46%  Similarity=0.604  Sum_probs=37.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      +||+|||||++|+++|+.|+++|++|+|||+.+..||++.+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   42 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYS   42 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecc
Confidence            79999999999999999999999999999998877766554

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.32  E-value=9.3e-12  Score=119.96  Aligned_cols=147  Identities=22%  Similarity=0.214  Sum_probs=95.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~-~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      .++||+|||||++|+++|..|+ +.|++|+|||+.+..|+.....        .+                      .+.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~--------~y----------------------pg~   56 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN--------RY----------------------PGA   56 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC--------CC----------------------TTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc--------CC----------------------CCc
Confidence            4589999999999999999999 8899999999987654311000        00                      011


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .+..+...+....                       . .+....++.    .          ....+...+.+.+.+.+.
T Consensus        57 ~~d~~s~~~~~~~-----------------------~-~~~~~~~~~----~----------~~~~~~~ei~~~l~~~~~   98 (540)
T 3gwf_A           57 LSDTESHLYRFSF-----------------------D-RDLLQESTW----K----------TTYITQPEILEYLEDVVD   98 (540)
T ss_dssp             EEEEEGGGSSCCS-----------------------C-HHHHHHCCC----S----------BSEEEHHHHHHHHHHHHH
T ss_pred             eecCCcceeeecc-----------------------c-cccccCCCC----c----------ccCCCHHHHHHHHHHHHH
Confidence            1111110000000                       0 001011110    0          122344677788888888


Q ss_pred             HcCC--eEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcC
Q 015072          165 KNGA--VLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISG  222 (413)
Q Consensus       165 ~~gv--~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g  222 (413)
                      +.|+  .++++++|+++..  +++...+.|++++|+++.+|+||+|+|.++.+..+.+.|
T Consensus        99 ~~g~~~~i~~~~~V~~i~~--~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG  156 (540)
T 3gwf_A           99 RFDLRRHFKFGTEVTSALY--LDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPG  156 (540)
T ss_dssp             HTTCGGGEEESCCEEEEEE--ETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTT
T ss_pred             HcCCcceeEeccEEEEEEE--eCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCC
Confidence            8888  8999999999998  643457899999998899999999999887655444433

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.31  E-value=1.4e-11  Score=117.86  Aligned_cols=58  Identities=12%  Similarity=0.212  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQS--T--ENCYNVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEE--C--SSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEe--e--CCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence            56777888888889999999999999988  6  4557888888888999999999998654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.31  E-value=2.1e-11  Score=110.90  Aligned_cols=120  Identities=22%  Similarity=0.280  Sum_probs=84.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      |++++||+|||||++|+++|+.|+++|++|+|||+.+..++..         ...++.                      
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~---------~~~~~~----------------------   50 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL---------TALYPE----------------------   50 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHH---------HHTCTT----------------------
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCee---------eccCCC----------------------
Confidence            3456899999999999999999999999999999976543100         000000                      


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      ..       + .                         .       .+. +              ..+.+..+...+.+.+
T Consensus        51 ~~-------~-~-------------------------~-------~~~-~--------------~~~~~~~~~~~l~~~~   75 (335)
T 2zbw_A           51 KY-------I-Y-------------------------D-------VAG-F--------------PKVYAKDLVKGLVEQV   75 (335)
T ss_dssp             SE-------E-C-------------------------C-------STT-C--------------SSEEHHHHHHHHHHHH
T ss_pred             ce-------e-e-------------------------c-------cCC-C--------------CCCCHHHHHHHHHHHH
Confidence            00       0 0                         0       000 0              0123456777777777


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .+.+++++++++|+++..  +  ++.+.+.+.+|+++.+|+||+|+|..+
T Consensus        76 ~~~~~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           76 APFNPVYSLGERAETLER--E--GDLFKVTTSQGNAYTAKAVIIAAGVGA  121 (335)
T ss_dssp             GGGCCEEEESCCEEEEEE--E--TTEEEEEETTSCEEEEEEEEECCTTSE
T ss_pred             HHcCCEEEeCCEEEEEEE--C--CCEEEEEECCCCEEEeCEEEECCCCCC
Confidence            778999999999999988  6  346788888887799999999999854

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.30  E-value=4.2e-11  Score=113.76  Aligned_cols=175  Identities=15%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCeeEe
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKVYF   88 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (413)
                      ||+|||||++|+++|+.|+++|++|+||||. ..+  +++....|.+..........  .    ..+.+..+....-  .
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~--g~s~~a~Ggi~~~~~~~d~~--~----~~~~d~l~~g~~~--~   69 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDG--GSTPIAKGGVAASVGSDDSP--E----LHAQDTIRVGDGL--C   69 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTC--SSGGGCCSCEECCCSTTCCH--H----HHHHHHHHHHTTC--S
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCC--chHHHHhCCeEEeCCCCCCH--H----HHHHHHHHhcCCc--C
Confidence            7999999999999999999999999999998 332  33333333333222211110  0    0111111110000  0


Q ss_pred             eeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHcCC
Q 015072           89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGA  168 (413)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv  168 (413)
                      ....+..   -.+...+..+++...|+++...     ...++. ...+   ...+.   +...+..+.+.|.+.+++.|+
T Consensus        70 d~~~v~~---~~~~~~~~i~~l~~~Gv~~~~~-----~~~~~g-~~~~---r~~~~---~d~~g~~l~~~L~~~~~~~gv  134 (472)
T 2e5v_A           70 DVKTVNY---VTSEAKNVIETFESWGFEFEED-----LRLEGG-HTKR---RVLHR---TDETGREIFNFLLKLAREEGI  134 (472)
T ss_dssp             CHHHHHH---HHHHHHHHHHHHHHTTCCCCSS-----CBCCTT-CSSC---CEECS---SSCHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHH---HHHHHHHHHHHHHHcCCCCCcc-----cccccC-cCcC---cEEEe---CCCCHHHHHHHHHHHHHhCCC
Confidence            0000000   0001123345555666654321     011111 1111   11111   123456788888888888899


Q ss_pred             eEecCceEEEEEeeeccCCCc--EEEEeCCccEEEeCeEEEcCCcChh
Q 015072          169 VLRDNTEVKTVLKVKDDVRGG--VTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       169 ~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +++++++| ++..  +++ ..  +.+.+.+|+ +.+|.||+|||.++.
T Consensus       135 ~i~~~~~v-~l~~--~~~-~v~Gv~v~~~~g~-~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          135 PIIEDRLV-EIRV--KDG-KVTGFVTEKRGLV-EDVDKLVLATGGYSY  177 (472)
T ss_dssp             CEECCCEE-EEEE--ETT-EEEEEEETTTEEE-CCCSEEEECCCCCGG
T ss_pred             EEEECcEE-EEEE--eCC-EEEEEEEEeCCCe-EEeeeEEECCCCCcc
Confidence            99999999 9987  521 22  233334454 789999999999885

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.30  E-value=1.8e-11  Score=118.18  Aligned_cols=68  Identities=21%  Similarity=0.192  Sum_probs=54.4

Q ss_pred             cHHHHHHHHHHHHHHcCC--eEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          151 KPTKAVSMFQTLAIKNGA--VLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv--~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +...+...+.+.+.+.++  .++++++|+++..  ++....+.|++.+|+++.||+||+|+|.++.+..+.+
T Consensus        97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~--~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i  166 (549)
T 4ap3_A           97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVL--DEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAF  166 (549)
T ss_dssp             BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEE--ETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEE--cCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCC
Confidence            346677778888888887  8899999999998  6434578999999988999999999998765444443

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.30  E-value=3.8e-11  Score=110.39  Aligned_cols=120  Identities=21%  Similarity=0.259  Sum_probs=85.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ++++||+|||||++|+++|+.|+++|++|+|||+.+..++...         ..++.                      .
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~---------~~~~~----------------------~   60 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA---------ALYPE----------------------K   60 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH---------HTCTT----------------------S
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc---------ccCCC----------------------c
Confidence            4468999999999999999999999999999999765431000         00000                      0


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .       + +                  .              .+. +              ..+++..+.+.+.+.+.
T Consensus        61 ~-------~-~------------------~--------------~~~-~--------------~~~~~~~~~~~l~~~~~   85 (360)
T 3ab1_A           61 H-------I-Y------------------D--------------VAG-F--------------PEVPAIDLVESLWAQAE   85 (360)
T ss_dssp             E-------E-C------------------C--------------STT-C--------------SSEEHHHHHHHHHHHHH
T ss_pred             c-------c-c------------------c--------------CCC-C--------------CCCCHHHHHHHHHHHHH
Confidence            0       0 0                  0              000 0              01234667777878888


Q ss_pred             HcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      +.+++++++++|+++..  .+ +..+.|.+.+|+++.+|+||+|+|..+
T Consensus        86 ~~~~~~~~~~~v~~i~~--~~-~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           86 RYNPDVVLNETVTKYTK--LD-DGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             TTCCEEECSCCEEEEEE--CT-TSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             HhCCEEEcCCEEEEEEE--CC-CceEEEEECCCcEEEeeEEEEccCCCc
Confidence            88999999999999998  62 236788888887899999999999854

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.30  E-value=3e-11  Score=112.63  Aligned_cols=59  Identities=5%  Similarity=-0.019  Sum_probs=47.5

Q ss_pred             ecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          150 IKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ++...+.+.|.+.+.  +++++++++|+++..  +  ++.+.|++.+|+++++|.||.|+|.++.
T Consensus       125 i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          125 INRNDLRAILLNSLE--NDTVIWDRKLVMLEP--G--KKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             ECHHHHHHHHHHTSC--TTSEEESCCEEEEEE--C--SSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             ECHHHHHHHHHhhcC--CCEEEECCEEEEEEE--C--CCEEEEEECCCcEEecCEEEECCCcchh
Confidence            455677777766553  368889999999998  6  4568888888888999999999999874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.29  E-value=7.9e-12  Score=120.59  Aligned_cols=70  Identities=14%  Similarity=0.038  Sum_probs=53.2

Q ss_pred             cHHHHHHHHHHHHHHcCC--eEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcC
Q 015072          151 KPTKAVSMFQTLAIKNGA--VLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISG  222 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv--~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g  222 (413)
                      ....+...+.+.+.+.++  .++++++|+++..  ++....|.|++++|+++.||+||+|+|.++.+..+.+.|
T Consensus        85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~--~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG  156 (545)
T 3uox_A           85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARY--VENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKG  156 (545)
T ss_dssp             BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEE--EGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTT
T ss_pred             CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEE--eCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCC
Confidence            346677777777777777  7889999999988  643467899999998899999999999877655444433

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.29  E-value=4.3e-11  Score=115.57  Aligned_cols=45  Identities=36%  Similarity=0.449  Sum_probs=40.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      +++||+|||||++|+++|+.|+++|++|+|+|+.+..||+..+..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~   47 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLR   47 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecc
Confidence            468999999999999999999999999999999998888766543

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.28  E-value=2.8e-11  Score=108.46  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=33.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ++++|||+|||||++|+++|++|+++|++|+|||++..+
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~g   41 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNR   41 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            345799999999999999999999999999999997543

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.28  E-value=4.3e-11  Score=115.37  Aligned_cols=66  Identities=17%  Similarity=0.190  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCc---EEEEeCCcc-EEEeCeEEEcCCcChhh--hhhhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGG---VTVVTSSGE-EFWGKKCVVTAGAWVGK--LVKKI  220 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~---~~v~~~~g~-~i~ad~vV~A~G~~~~~--l~~~~  220 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +++ +.   +.|++++|+ ++.+|.||+|+|.+.+.  ++..+
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~  325 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEE--DAN-GRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKIL  325 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEE--CTT-SBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEE--cCC-CceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHc
Confidence            457788888899999999999999999987  632 22   678888887 79999999999988764  45554

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.27  E-value=5.9e-11  Score=101.77  Aligned_cols=61  Identities=20%  Similarity=0.140  Sum_probs=48.2

Q ss_pred             cHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhh
Q 015072          151 KPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~  215 (413)
                      ++..+.+.+.+.+++. |++++ +++|+++..  ++ +..+.+.+.+|++++||.||+|+|.++..
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~--~~-~~v~~v~~~~g~~i~a~~VV~A~G~~s~~  127 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLHLF-QATATGLLL--EG-NRVVGVRTWEGPPARGEKVVLAVGSFLGA  127 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE--ET-TEEEEEEETTSCCEECSEEEECCTTCSSC
T ss_pred             CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEE--eC-CEEEEEEECCCCEEECCEEEECCCCChhh
Confidence            4467778888888886 99998 579999988  62 23346778888779999999999998763

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.27  E-value=1e-11  Score=120.25  Aligned_cols=66  Identities=15%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHcC--CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          153 TKAVSMFQTLAIKNG--AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       153 ~~~~~~l~~~~~~~g--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ..+.+.+...+.+.+  ..++++++|+++..  +++.+.+.|++++|++++||+||+|+|.++.+..+.+
T Consensus        94 ~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~--~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i  161 (542)
T 1w4x_A           94 PEILRYINFVADKFDLRSGITFHTTVTAAAF--DEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNF  161 (542)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEE--ETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCceEEcCcEEEEEEE--cCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCC
Confidence            455666666666655  67889999999998  6433578898888888999999999999876554444

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.27  E-value=5.8e-11  Score=112.36  Aligned_cols=66  Identities=14%  Similarity=0.081  Sum_probs=49.6

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---cc---EEEeCeEEEcCCcChhhhhhhh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---GE---EFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~---~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ....+.+.+.+.+.+.+..++++++|++|..  .  ++.+.|++.+   |+   ++.+|+||+|+|.++.+..+.+
T Consensus       113 ~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~--~--~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i  184 (447)
T 2gv8_A          113 HRHTIQEYQRIYAQPLLPFIKLATDVLDIEK--K--DGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNI  184 (447)
T ss_dssp             BHHHHHHHHHHHHGGGGGGEECSEEEEEEEE--E--TTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCC
T ss_pred             CHHHHHHHHHHHHHHhhCeEEeCCEEEEEEe--C--CCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCC
Confidence            3456777777777776788989999999988  6  4557776654   65   6999999999999876544433

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.27  E-value=4e-11  Score=114.62  Aligned_cols=48  Identities=33%  Similarity=0.439  Sum_probs=41.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      .++||+|||||++|+++|+.|+++|++|+|+|+.+..||+..+....+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g   62 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG   62 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCC
Confidence            468999999999999999999999999999999999888877654433

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.27  E-value=6.5e-11  Score=113.69  Aligned_cols=57  Identities=25%  Similarity=0.257  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+.+.|.+.+.+.| ++|+++++|++|..  .  ++.+.|++.+|++++||+||+|+|...
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~--~--~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVN--E--RDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEE--C--SSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEE--c--CCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            567888888888888 99999999999998  6  456888888887799999999999754

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.26  E-value=1.1e-10  Score=95.91  Aligned_cols=62  Identities=19%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +..+.+.+.+.+++.|++++.+ +|+++..  +  ++.+.+++++| ++++|.||+|+|.++. +.+.+
T Consensus        55 ~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~--~--~~~~~v~~~~g-~i~ad~vI~A~G~~~~-~~~~~  116 (180)
T 2ywl_A           55 GEELLRRLEAHARRYGAEVRPG-VVKGVRD--M--GGVFEVETEEG-VEKAERLLLCTHKDPT-LPSLL  116 (180)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEC-CCCEEEE--C--SSSEEEECSSC-EEEEEEEEECCTTCCH-HHHHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEeC-EEEEEEE--c--CCEEEEEECCC-EEEECEEEECCCCCCC-ccccC
Confidence            4567778888888999999999 9999988  6  34578888888 6999999999999874 54544

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.26  E-value=1e-11  Score=119.43  Aligned_cols=61  Identities=20%  Similarity=0.287  Sum_probs=49.4

Q ss_pred             eecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          149 VIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .++...+.+.+.+.+++ .|++++ +++|++|..  ++ +..+.|.+.+|+++.|+.||+|||.++
T Consensus       119 ~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~--e~-g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          119 QADKKRYREYMKKVCENQENLYIK-QEEVVDIIV--KN-NQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE--SS-SBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe--cC-CEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            45677888899888887 589995 789999988  62 234568888888899999999999874

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.26  E-value=2e-11  Score=112.56  Aligned_cols=59  Identities=17%  Similarity=0.164  Sum_probs=49.1

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+..+...+.+.+.+.|++++++++|+++..  +  ++.+.|.+.+++ +.+|+||+|+|.+..
T Consensus        86 ~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~-~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           86 SGETYAEYLQVVANHYELNIFENTVVTNISA--D--DAYYTIATTTET-YHADYIFVATGDYNF  144 (369)
T ss_dssp             BHHHHHHHHHHHHHHTTCEEECSCCEEEEEE--C--SSSEEEEESSCC-EEEEEEEECCCSTTS
T ss_pred             CHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE--C--CCeEEEEeCCCE-EEeCEEEECCCCCCc
Confidence            4466777788888889999999999999998  6  346788887775 999999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.26  E-value=2.9e-11  Score=109.27  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      +..+...+.+.+.+.|++++. ++|+++..  +  ++.+.+.+.+++++.+|+||+|+|.+.
T Consensus        69 ~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~--~--~~~~~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           69 ASDMIKVFNKHIEKYEVPVLL-DIVEKIEN--R--GDEFVVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             HHHHHHHHHHHHHTTTCCEEE-SCEEEEEE--C----CEEEEESSSCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEE-EEEEEEEe--c--CCEEEEEECCCCEEEcCEEEECcCCCC
Confidence            456777778888888999998 89999988  6  456888888877899999999999863

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.26  E-value=3.2e-11  Score=109.41  Aligned_cols=117  Identities=22%  Similarity=0.338  Sum_probs=84.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      +.+||+|||||++|+++|+.|+++|++|+|||+.+..++..         ...++.                      ..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~---------~~~~~~----------------------~~   54 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL---------SALYPE----------------------KY   54 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH---------HHHCTT----------------------SE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee---------hhcCCC----------------------ce
Confidence            45899999999999999999999999999999987643110         000000                      00


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                             +.                                 .++. +  +            .+.+..+...+.+.+.+
T Consensus        55 -------~~---------------------------------~~~~-~--~------------~~~~~~~~~~~~~~~~~   79 (332)
T 3lzw_A           55 -------IY---------------------------------DVAG-F--P------------KIRAQELINNLKEQMAK   79 (332)
T ss_dssp             -------EC---------------------------------CSTT-C--S------------SEEHHHHHHHHHHHHTT
T ss_pred             -------Ee---------------------------------ccCC-C--C------------CCCHHHHHHHHHHHHHH
Confidence                   00                                 0000 0  0            12346777788888888


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      .|++++++++|+++..  .+ ++.+.+.+.+|+ +.+|+||+|+|..
T Consensus        80 ~~~~~~~~~~v~~i~~--~~-~~~~~v~~~~g~-~~~d~vVlAtG~~  122 (332)
T 3lzw_A           80 FDQTICLEQAVESVEK--QA-DGVFKLVTNEET-HYSKTVIITAGNG  122 (332)
T ss_dssp             SCCEEECSCCEEEEEE--CT-TSCEEEEESSEE-EEEEEEEECCTTS
T ss_pred             hCCcEEccCEEEEEEE--CC-CCcEEEEECCCE-EEeCEEEECCCCC
Confidence            8999999999999998  62 137888888887 9999999999984

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.23  E-value=6.9e-10  Score=104.31  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChhhh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~~l  216 (413)
                      ..+.+.|.+.+++.|++|+++++|++|..  +  ++.+. |.+ +|+++.||+||+|+|.+...+
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~--~--~~~v~~v~~-~g~~~~ad~VV~a~~~~~~~~  293 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIM--E--NGKVVGVKS-EGEVARCKQLICDPSYVPDRV  293 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEE--E--TTEEEEEEE-TTEEEECSEEEECGGGCGGGE
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEE--e--CCEEEEEEE-CCeEEECCEEEECCCCCcccc
Confidence            68889999999889999999999999998  6  33443 444 677799999999999997533

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.23  E-value=1.2e-10  Score=114.73  Aligned_cols=186  Identities=14%  Similarity=0.104  Sum_probs=97.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHH---H-cCCcEEEEcccCCCCCCCCCCCCCcceecc--cCCccccchHHHHHHHHHHHH
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLA---K-RGQKTLLLEQFDFLHHRGSSHGESRTIRAT--YPEDYYHPMVLESSLLWEQAQ   79 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~---~-~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (413)
                      .++||+|||||++|+++|+.|+   + +|.+|+||||....++  ++. ..|.....  +...............+....
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s--~~~-a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~   97 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS--GAV-AQGLSAINTYIDLTGRSERQNTLEDYVRYVT   97 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC--STT-TTCEEEESCCCCSSSSBSCCCCHHHHHHHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCC--cce-ecccccccchhhHHHhcCCCCCHHHHHHHHH
Confidence            3589999999999999999999   6 8999999999876432  111 22222111  100000000000011122221


Q ss_pred             HhcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           80 SEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      .. +... .....+..   -.....+...++...|+++.....       .. +.....+       ...+++..+.+.+
T Consensus        98 ~~-g~~l-~d~~~v~~---~~~~~~~~i~~l~~~Gv~f~~~~~-------g~-~~~~~~~-------~~~~~g~~~~~~l  157 (643)
T 1jnr_A           98 LD-MMGL-AREDLVAD---YARHVDGTVHLFEKWGLPIWKTPD-------GK-YVREGQW-------QIMIHGESYKPII  157 (643)
T ss_dssp             HH-TTTC-CCHHHHHH---HHHHHHHHHHHHHHTTCCBCBCTT-------SC-BCBSSSS-------CEEEEETTHHHHH
T ss_pred             HH-hcCc-CcHHHHHH---HHHHHHHHHHHHHHcCCcceeCCC-------CC-ccCCCcc-------ccCCCcHHHHHHH
Confidence            11 1000 00000000   001112344556666765432210       00 0000000       0122345667777


Q ss_pred             HHHHHHc-CC-eEecCceEEEEEeeeccC--CCcEEEE---eCCcc--EEEeCeEEEcCCcChhhh
Q 015072          160 QTLAIKN-GA-VLRDNTEVKTVLKVKDDV--RGGVTVV---TSSGE--EFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       160 ~~~~~~~-gv-~i~~~~~V~~i~~~~~~~--~~~~~v~---~~~g~--~i~ad~vV~A~G~~~~~l  216 (413)
                      .+.+++. |+ ++++++.|++|..  +++  +....|.   ..+|+  .+.|+.||+|||.++..+
T Consensus       158 ~~~~~~~~gv~~i~~~~~v~~L~~--~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~y  221 (643)
T 1jnr_A          158 AEAAKMAVGEENIYERVFIFELLK--DNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLF  221 (643)
T ss_dssp             HHHHHHHHCGGGEECSEEEEEEEE--CTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSS
T ss_pred             HHHHHhcCCCcEEEecCEEEEEEE--cCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccccc
Confidence            7888777 99 9999999999998  632  1222232   24555  689999999999988643

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.22  E-value=1.5e-10  Score=104.18  Aligned_cols=119  Identities=20%  Similarity=0.275  Sum_probs=79.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      ++.|||+|||||++|+++|.+|+++|++|+|||+...++.+.     .|.+....                         
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~-----~G~~~~~~-------------------------   51 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAA-----GGQLTTTT-------------------------   51 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCT-----TCGGGGSS-------------------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccc-----CCCcCChH-------------------------
Confidence            345999999999999999999999999999999976543211     01111000                         


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      . ..                                       .+|. +  +.           .+++.++...+.+.+.
T Consensus        52 ~-i~---------------------------------------~~~g-~--~~-----------~i~~~~l~~~~~~~~~   77 (314)
T 4a5l_A           52 I-IE---------------------------------------NFPG-F--PN-----------GIDGNELMMNMRTQSE   77 (314)
T ss_dssp             E-EC---------------------------------------CSTT-C--TT-----------CEEHHHHHHHHHHHHH
T ss_pred             H-hh---------------------------------------hccC-C--cc-----------cCCHHHHHHHHHHHHh
Confidence            0 00                                       0010 0  00           1234566677777788


Q ss_pred             HcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      +.+.++.. ..|..+..  .  .....+.+.++.++.+|+||+|||+.
T Consensus        78 ~~~~~~~~-~~v~~~~~--~--~~~~~~~~~~~~~~~~~~liiATG~~  120 (314)
T 4a5l_A           78 KYGTTIIT-ETIDHVDF--S--TQPFKLFTEEGKEVLTKSVIIATGAT  120 (314)
T ss_dssp             HTTCEEEC-CCEEEEEC--S--SSSEEEEETTCCEEEEEEEEECCCEE
T ss_pred             hcCcEEEE-eEEEEeec--C--CCceEEEECCCeEEEEeEEEEccccc
Confidence            88888874 45666666  4  35566667788889999999999974

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.22  E-value=2.1e-11  Score=117.78  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             eeecHHHHHHHHHHHHHH-cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          148 GVIKPTKAVSMFQTLAIK-NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~-~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..++...+.+.+.+.+++ .|++++ +++|++|..  ++ +..+.|.+.+|.++.||.||+|+|.++
T Consensus       119 ~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~--e~-g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          119 AQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV--EN-DRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE--SS-SBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             hhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe--cC-CEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            346777888889888887 699995 689999987  62 244578888888899999999999975

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.22  E-value=1.2e-10  Score=111.36  Aligned_cols=135  Identities=16%  Similarity=0.121  Sum_probs=87.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      ..+||+|||||++|+++|..|+++|++|+|||+.+..+.. .      ..          .+...+...+.    .++..
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~-~------~~----------~~~~~~~~~l~----~~g~~  149 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH-N------VL----------HLWPFTIHDLR----ALGAK  149 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC-C------EE----------ECCHHHHHHHH----TTTHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC-C------cc----------cCChhHHHHHH----HcCCc
Confidence            4689999999999999999999999999999998765311 0      00          00011111111    11100


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                                            ..   .+   .          +..    ..         -..++...+.+.|.+.+.+
T Consensus       150 ----------------------~~---~~---~----------~~~----~~---------~~~~~~~~l~~~L~~~~~~  178 (497)
T 2bry_A          150 ----------------------KF---YG---R----------FCT----GT---------LDHISIRQLQLLLLKVALL  178 (497)
T ss_dssp             ----------------------HH---CT---T----------TTC----TT---------CCEEEHHHHHHHHHHHHHH
T ss_pred             ----------------------cc---cc---c----------ccc----cc---------cccCCHHHHHHHHHHHHHh
Confidence                                  00   00   0          000    00         0123446788888888888


Q ss_pred             cCCeEecCceEEEEEeeecc-CCCcEEEEe--C-Cc--cEEEeCeEEEcCCcChh
Q 015072          166 NGAVLRDNTEVKTVLKVKDD-VRGGVTVVT--S-SG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~-~~~~~~v~~--~-~g--~~i~ad~vV~A~G~~~~  214 (413)
                      .|++++++++|+++..  ++ ++..+.|++  . +|  +++++|.||+|+|.++.
T Consensus       179 ~gv~v~~~~~v~~i~~--~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          179 LGVEIHWGVKFTGLQP--PPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             TTCEEEESCEEEEEEC--CCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             CCCEEEeCCEEEEEEE--ecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            9999999999999987  52 124556655  4 66  36999999999999874

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.21  E-value=2.9e-10  Score=109.74  Aligned_cols=62  Identities=16%  Similarity=0.238  Sum_probs=49.2

Q ss_pred             eeecHHHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcE-EEEeCCccEEEeCeEEEcCCcChh
Q 015072          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGV-TVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~-~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..++...+.+.+.+.+++. |++++ +..|+++..  +  ++.+ .|.+.+|+++.||.||+|+|.|+.
T Consensus       112 ~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~--d--~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          112 AQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSA--N--SGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             EEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE--E--TTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             hhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEe--c--CCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence            3567778888888888874 89986 568999987  6  3334 477888888999999999998854

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.20  E-value=9.9e-11  Score=111.06  Aligned_cols=71  Identities=18%  Similarity=0.088  Sum_probs=52.6

Q ss_pred             ecHHHHHHHHHHHHHHcCCe--EecCceEEEEEeeeccCCCcEEEEeCC---c--cEEEeCeEEEcCCcChhhhhhhhcC
Q 015072          150 IKPTKAVSMFQTLAIKNGAV--LRDNTEVKTVLKVKDDVRGGVTVVTSS---G--EEFWGKKCVVTAGAWVGKLVKKISG  222 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~gv~--i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~vV~A~G~~~~~l~~~~~g  222 (413)
                      .....+.+.+.+.+.+.|++  ++++++|++|..  .++...+.|++.+   |  .++.+|+||+|+|.++.+..+.+.|
T Consensus        98 ~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~--~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG  175 (464)
T 2xve_A           98 PPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEF--NEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEG  175 (464)
T ss_dssp             CBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEE--ETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCCCCBT
T ss_pred             CCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEE--cCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccCCCCC
Confidence            34567788888888888988  889999999998  6332367776543   4  4689999999999877655444434

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.19  E-value=1.5e-10  Score=109.94  Aligned_cols=59  Identities=12%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE-eCCccEEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV-TSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +..+.+.+.+.+++.|++++.+++|+++..  +++ +.+.|+ +++|+ +.+|.||+|+|.+.+
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~-~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSA--DAD-GRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEE--CTT-SCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEE--cCC-CEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence            356778888889999999999999999988  622 336788 88888 999999999998765

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.18  E-value=3.5e-10  Score=112.92  Aligned_cols=43  Identities=40%  Similarity=0.404  Sum_probs=38.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.+..|++..+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T  377 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWD  377 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeee
Confidence            3579999999999999999999999999999998887765433

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.18  E-value=1.4e-09  Score=101.80  Aligned_cols=69  Identities=14%  Similarity=0.108  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcCCC
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGLE  224 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~~  224 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +++ ....|++++|+++.||.||+|+|...+ .++... |+.
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~-~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~-gl~  262 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEG--DGT-KVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA-GAS  262 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEE--SSS-BEEEEEESSSCEEECSEEEECSCCEESCHHHHHT-TCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEe--cCC-cEEEEEeCCCCEEEcCEEEECCCCccChHHHHhC-CCC
Confidence            467788888889999999999999999988  621 334688889988999999999998765 465554 543

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.18  E-value=1.1e-10  Score=104.83  Aligned_cols=58  Identities=17%  Similarity=0.235  Sum_probs=46.6

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ++..+.+.+.+.+.+.|++++. ++|+++..  +  ++.+.+.+.+|+++.+|+||+|+|.+.
T Consensus        57 ~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~--~--~~~~~v~~~~g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           57 SGLDFMQPWQEQCFRFGLKHEM-TAVQRVSK--K--DSHFVILAEDGKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             CHHHHHHHHHHHHHTTSCEEEC-SCEEEEEE--E--TTEEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHHcCCEEEE-EEEEEEEE--c--CCEEEEEEcCCCEEECCEEEECCCCCC
Confidence            3456677777778888999987 78999988  6  456778777887899999999999754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.18  E-value=1.2e-10  Score=106.02  Aligned_cols=57  Identities=16%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe---CCccEEEeCeEEEcCCcCh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT---SSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~vV~A~G~~~  213 (413)
                      +..+...+.+.+.+.|++++.++ |+++..  +  ...+.+.+   .++.++.+|+||+|+|...
T Consensus        83 ~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~--~--~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           83 GSELMDRMREQSTKFGTEIITET-VSKVDL--S--SKPFKLWTEFNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSC-EEEEEC--S--SSSEEEEETTCSSSCCEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeE-EEEEEE--c--CCEEEEEEEecCCCcEEEeCEEEECcCCCc
Confidence            46777788888888999999888 999988  6  46677776   3566799999999999853

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.17  E-value=7e-11  Score=107.32  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=46.4

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ++..+...+.+.+.+.|++++.++ |+++..  .  .+.+.|.+ +++++++|+||+|+|.+..
T Consensus        68 ~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~--~--~~~~~v~~-~~~~~~~~~vv~A~G~~~~  125 (333)
T 1vdc_A           68 LGVELTDKFRKQSERFGTTIFTET-VTKVDF--S--SKPFKLFT-DSKAILADAVILAIGAVAK  125 (333)
T ss_dssp             EHHHHHHHHHHHHHHTTCEEECCC-CCEEEC--S--SSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEeE-EEEEEE--c--CCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence            345677777788888899999876 999987  6  45677877 6777999999999998753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.17  E-value=2e-10  Score=102.45  Aligned_cols=56  Identities=9%  Similarity=0.007  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHc-CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKN-GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~-gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+...+.+.+.+. +++++ +++|+++..  +  ++.+.+.+.+++++.+|+||+|+|...
T Consensus        56 ~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~--~--~~~~~v~~~~g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           56 GEIIAEARRQIERYPTIHWV-EGRVTDAKG--S--FGEFIVEIDGGRRETAGRLILAMGVTD  112 (297)
T ss_dssp             HHHHHHHHHHHTTCTTEEEE-ESCEEEEEE--E--TTEEEEEETTSCEEEEEEEEECCCCEE
T ss_pred             HHHHHHHHHHHHhcCCeEEE-EeEEEEEEE--c--CCeEEEEECCCCEEEcCEEEECCCCCC
Confidence            55666676777666 67776 468999988  6  456888888888899999999999854

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.16  E-value=7.5e-10  Score=105.02  Aligned_cols=45  Identities=33%  Similarity=0.333  Sum_probs=40.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      .++||+|||||++|+++|+.|+++|++|+|+|+.+..||+..+..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~   48 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDT   48 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccc
Confidence            468999999999999999999999999999999988877765543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.15  E-value=4.9e-10  Score=105.31  Aligned_cols=49  Identities=22%  Similarity=0.338  Sum_probs=42.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCCCCCc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      .+++||+|||||++|+++|+.|+++| ++|+|+|+.+..||+..+....|
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G   53 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHG   53 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCC
Confidence            45689999999999999999999999 89999999999888777654433

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.15  E-value=2.4e-10  Score=103.11  Aligned_cols=55  Identities=20%  Similarity=0.403  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+...+.+.+.+.|++++. .+|+++..  +  ++.+.|.+ +++++.+|+||+|+|.+.
T Consensus        72 ~~~~~~~~~~~~~~~v~~~~-~~v~~i~~--~--~~~~~v~~-~~~~~~~~~li~AtG~~~  126 (319)
T 3cty_A           72 SELAKLFADHAANYAKIREG-VEVRSIKK--T--QGGFDIET-NDDTYHAKYVIITTGTTH  126 (319)
T ss_dssp             HHHHHHHHHHHHTTSEEEET-CCEEEEEE--E--TTEEEEEE-SSSEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-eeEEEEEE--e--CCEEEEEE-CCCEEEeCEEEECCCCCc
Confidence            45566667777788999987 78999987  6  35566766 455699999999999754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.15  E-value=2e-10  Score=110.09  Aligned_cols=45  Identities=29%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      +.+.+||+|||||++|+++|+.|+++|++|+|+|+.+..||+..+
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~   52 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWT   52 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCE
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceee
Confidence            345689999999999999999999999999999999988876544

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.15  E-value=5.4e-10  Score=106.52  Aligned_cols=44  Identities=27%  Similarity=0.242  Sum_probs=39.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~~~~~~s   48 (413)
                      .+.+||+|||||++|+++|++|+++| .+|+|+|+.+..||...+
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            34689999999999999999999998 799999999888777665

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.13  E-value=1.3e-09  Score=101.00  Aligned_cols=67  Identities=19%  Similarity=0.107  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcCC
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGL  223 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~  223 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+++|+++.+|.||+|+|.+.+ .+++.+ |+
T Consensus       186 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~-g~  253 (384)
T 2v3a_A          186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKK--A--GEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAA-GL  253 (384)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECSCEEECCHHHHHT-TC
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEe--c--CCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHC-CC
Confidence            567788888888899999999999999988  6  3567788888888999999999998866 365554 54

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.13  E-value=9.2e-10  Score=106.11  Aligned_cols=45  Identities=38%  Similarity=0.458  Sum_probs=40.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~~~~~~~s~~   50 (413)
                      +++||+|||||++|+++|+.|+++| ++|+|+|+.+..||+..+..
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~   52 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVT   52 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeee
Confidence            4689999999999999999999999 99999999999988876643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.13  E-value=1.2e-09  Score=104.85  Aligned_cols=59  Identities=20%  Similarity=0.292  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++.+|.||+|+|.+.+
T Consensus       222 d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  280 (499)
T 1xdi_A          222 DADAALVLEESFAERGVRLFKNARAASVTR--T--GAGVLVTMTDGRTVEGSHALMTIGSVPN  280 (499)
T ss_dssp             SHHHHHHHHHHHHHTTCEEETTCCEEEEEE--C--SSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEE--e--CCEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            346778888889999999999999999988  6  3457787888888999999999998765

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.13  E-value=1.3e-09  Score=97.46  Aligned_cols=37  Identities=32%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~   43 (413)
                      ++||+|||||++|+++|+.|+++  |++|+|||+....+
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~G  117 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG  117 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccC
Confidence            58999999999999999999997  99999999987664

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.12  E-value=2.6e-10  Score=103.12  Aligned_cols=58  Identities=22%  Similarity=0.172  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeecc-CCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD-VRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+.+.+.+.+.+.|++++. .+|+++..  +. ++..+.+.+.+|+++.+|+||+|+|.+.
T Consensus        65 ~~~~~~l~~~~~~~gv~~~~-~~v~~i~~--~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           65 MELAQRMHQQAEKFGAKVEM-DEVQGVQH--DATSHPYPFTVRGYNGEYRAKAVILATGADP  123 (325)
T ss_dssp             HHHHHHHHHHHHHTTCEEEE-CCEEEEEE--CTTSSSCCEEEEESSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEe-eeEEEEEe--ccCCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            55666777778888999986 68999987  51 1122667667777899999999999854

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.12  E-value=6.7e-10  Score=105.81  Aligned_cols=65  Identities=17%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++.+|.||+|+|...+ .++..+
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~  266 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEG--E--NGKVARVITDKRTLDADLVILAAGVSPNTQLARDA  266 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEE--S--SSBEEEEEESSCEEECSEEEECSCEEECCHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEc--c--CCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhC
Confidence            356778888889999999999999999988  6  4556677778888999999999998755 455554

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.12  E-value=4.2e-10  Score=101.14  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      +.+|||+|||||++|+++|.+|+++|++|+|||++..+
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~g   41 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPG   41 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            34799999999999999999999999999999987544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.12  E-value=5.5e-10  Score=106.96  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---Cc--cEEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~vV~A~G~~~~  214 (413)
                      +..+.+.+.+.+++.|++++.+++|+++..  +  ++.+.+...   +|  +++.+|.||+|+|...+
T Consensus       238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~--~--~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~  301 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVK--S--GDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS  301 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEE--E--TTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEE--e--CCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence            356777888888899999999999999988  6  344444433   14  47999999999997543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.12  E-value=5e-10  Score=105.89  Aligned_cols=59  Identities=17%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +++ +.+.+.+.+|+++.+|.||+|+|...+
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVK--NTD-GSLTLELEDGRSETVDCLIWAIGREPA  266 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEE--CTT-SCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--eCC-cEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            46777888888889999999999999988  622 346788888888999999999998654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.09  E-value=5.4e-10  Score=106.33  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  +..+.+.++++ ++.+|.||+|+|.+.+
T Consensus       215 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~--~~~~~v~~~~~-~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAH--M--DGEFVLTTTHG-ELRADKLLVATGRTPN  272 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTCCEEEEEE--E--TTEEEEEETTE-EEEESEEEECSCEEES
T ss_pred             CHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--e--CCEEEEEECCc-EEEcCEEEECCCCCcC
Confidence            456788888889999999999999999988  6  34566766644 5999999999998765

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.08  E-value=5.2e-10  Score=106.67  Aligned_cols=60  Identities=10%  Similarity=-0.008  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc-cEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG-EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  ++++..+.+.+++| +++.+|.||+|+|...+
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  286 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEK--NVETDKLKIHMNDSKSIDDVDELIWTIGRKSH  286 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEE--CC-CCCEEEEETTSCEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEE--cCCCcEEEEEECCCcEEEEcCEEEECCCCCCc
Confidence            46777788888889999999999999987  52222367888888 67999999999997554

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.08  E-value=3.6e-09  Score=94.04  Aligned_cols=38  Identities=42%  Similarity=0.443  Sum_probs=34.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~   43 (413)
                      .++||+|||||++|+++|+.|+++  |++|+|+|+.+..+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~g  103 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG  103 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccc
Confidence            347999999999999999999998  99999999987765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.08  E-value=7.2e-09  Score=96.59  Aligned_cols=70  Identities=17%  Similarity=0.179  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcCCCc
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGLEL  225 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~~~  225 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  ++ +....|++++|+++.||.||+|+|...+ .+++.. |+..
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~-~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~-gl~~  253 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAA--EG-DRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAA-GLPT  253 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEE--ET-TEEEEEEETTSCEEECSEEEECCCEEECCHHHHHT-TCCB
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEe--cC-CcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhC-CCCC
Confidence            467788888889999999999999999988  62 2344678889988999999999998765 466655 5433

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.07  E-value=9.4e-10  Score=106.30  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~   40 (413)
                      ..+||+||||||.+|+.+|.+|++. +.+|+|||++.
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            3579999999999999999999985 78999999987

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.06  E-value=1.1e-09  Score=105.09  Aligned_cols=57  Identities=11%  Similarity=0.038  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .++.+.+.+.+++.|+++++++.|+++..  .  ++.+.+...+++++.+|.|++|+|-..
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~--~--~~~~~v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTK--M--DDKILVEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEe--c--CCeEEEEEcCCCeEEEEEEEEcccccC
Confidence            56778888999999999999999999998  6  467778888888899999999999653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.06  E-value=1e-10  Score=109.93  Aligned_cols=36  Identities=17%  Similarity=0.141  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +++||+|||||++|+++|+.|+++|++|+|||+...
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~   56 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKP   56 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCCh
Confidence            457999999999999999999999999999999763

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.06  E-value=8.6e-10  Score=100.20  Aligned_cols=55  Identities=24%  Similarity=0.352  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEE-EeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTV-VTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v-~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+...+.+.+.+.|++++.++ |+++..  .   +.+.+ .+.+++++.+|+||+|+|...
T Consensus        71 ~~~~~~l~~~~~~~~v~~~~~~-v~~i~~--~---~~~~v~~~~~g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A           71 PELMDEMREQALRFGADLRMED-VESVSL--H---GPLKSVVTADGQTHRARAVILAMGAAA  126 (335)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCC-EEEEEC--S---SSSEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEee-EEEEEe--C---CcEEEEEeCCCCEEEeCEEEECCCCCc
Confidence            4566667777788899999876 888876  4   34566 677787899999999999854

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.05  E-value=9.8e-10  Score=98.63  Aligned_cols=59  Identities=17%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccC-CCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV-RGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+...+.+.+.+.|++++.+++|+.+..  +.. ...+.+.+++|+++.+|+||+|+|.+.
T Consensus        56 ~~~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           56 QKLAGALKVHVDEYDVDVIDSQSASKLIP--AAVEGGLHQIETASGAVLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHHHHHHHHHTSCEEEECSCCEEEEEC--CSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEccCEEEEEEe--cccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            45666677777788999999999999987  521 236788888887799999999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.05  E-value=9.7e-10  Score=99.13  Aligned_cols=55  Identities=11%  Similarity=0.080  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+...+.+.+.+.|++++.++ |+++..  +  .+.+.+ +.+++++.+|+||+|+|...
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~-v~~i~~--~--~~~~~v-~~~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           62 PLLMERMHEHATKFETEIIFDH-INKVDL--Q--NRPFRL-NGDNGEYTCDALIIATGASA  116 (320)
T ss_dssp             HHHHHHHHHHHHHTTCEEECCC-EEEEEC--S--SSSEEE-EESSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEee-eeEEEe--c--CCEEEE-EeCCCEEEcCEEEECCCCCc
Confidence            4566666777788899999876 888887  6  456666 55666799999999999753

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.05  E-value=4.1e-09  Score=99.89  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+++++|+++.+|.||+|+|...+
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~~D~vv~A~G~~p~  265 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVP--E--AKGARVELEGGEVLEADRVLVAVGRRPY  265 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEE--e--CCEEEEEECCCeEEEcCEEEECcCCCcC
Confidence            56777888888889999999999999988  6  3457777777878999999999998765

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.05  E-value=3.7e-09  Score=100.81  Aligned_cols=58  Identities=19%  Similarity=0.094  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC--Cc-cEEEeCeEEEcCCcCh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS--SG-EEFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g-~~i~ad~vV~A~G~~~  213 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+...  +| +++.+|.||+|+|...
T Consensus       220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~--~--~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          220 DEQVAKEAQKILTKQGLKILLGARVTGTEV--K--NKQVTVKFVDAEGEKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEE--C--SSCEEEEEESSSEEEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEE--c--CCEEEEEEEeCCCcEEEECCEEEEeeCCcc
Confidence            356777888888999999999999999988  6  344555544  33 5799999999999754

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.04  E-value=2e-09  Score=102.19  Aligned_cols=58  Identities=14%  Similarity=0.047  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc-EEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+++.+|+ ++.+|.||+|+|...+
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  265 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALER--D--AQGTTLVAQDGTRLEGFDSVIWAVGRAPN  265 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEE--E--TTEEEEEETTCCEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--e--CCeEEEEEeCCcEEEEcCEEEECCCCCcC
Confidence            46677788888899999999999999987  6  334778888888 8999999999998654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.03  E-value=1.6e-10  Score=106.94  Aligned_cols=51  Identities=10%  Similarity=-0.065  Sum_probs=41.7

Q ss_pred             eecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          149 VIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .++...+.+.|.+.+.+.|++++++++|+++..  .   .          ++++|.||.|+|.++.
T Consensus        94 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~---~----------~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           94 GVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L---P----------LADYDLVVLANGVNHK  144 (381)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C---C----------GGGCSEEEECCGGGGG
T ss_pred             eecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c---c----------cccCCEEEECCCCCch
Confidence            456678899999999888999999999987754  2   1          1579999999999885

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.03  E-value=8.4e-10  Score=105.46  Aligned_cols=59  Identities=20%  Similarity=0.141  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +++ +.+.+++.+|+++.+|.||+|+|...+
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~-~~~~v~~~~G~~i~~D~vv~a~G~~p~  289 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTK--NAD-GTRHVVFESGAEADYDVVMLAIGRVPR  289 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEE--CTT-SCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCC-CEEEEEECCCcEEEcCEEEEccCCCcC
Confidence            56778888889999999999999999988  622 347788888878999999999998765

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.02  E-value=9.6e-09  Score=97.96  Aligned_cols=60  Identities=15%  Similarity=-0.070  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC-------ccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS-------GEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~-------g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++.++.|+++..  .+++..+.+.+.+       |+++.+|.||+|+|...+
T Consensus       228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~  294 (478)
T 3dk9_A          228 SMISTNCTEELENAGVEVLKFSQVKEVKK--TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPN  294 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEE--CSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--cCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccC
Confidence            56777888888999999999999999987  6322135666654       256999999999997544

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.00  E-value=9.7e-09  Score=95.85  Aligned_cols=69  Identities=19%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcCCCc
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGLEL  225 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~~~  225 (413)
                      +..+.+.+.+.+++.|+++++++.|+++..  +  +....|++++|+++.+|.||+|+|...+ .++..+ |+.+
T Consensus       184 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~-gl~~  253 (410)
T 3ef6_A          184 GRRIGAWLRGLLTELGVQVELGTGVVGFSG--E--GQLEQVMASDGRSFVADSALICVGAEPADQLARQA-GLAC  253 (410)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEC--S--SSCCEEEETTSCEEECSEEEECSCEEECCHHHHHT-TCCB
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEec--c--CcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhC-CCcc
Confidence            356777888888899999999999999988  6  3455788888988999999999998765 466655 5433

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.00  E-value=2.8e-09  Score=102.50  Aligned_cols=59  Identities=14%  Similarity=0.163  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccC-CCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV-RGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      ..+...+.+.+.+.|++++.+++|+++..  +.. ++.+.|.+.+|+++.+|+||+|+|.+.
T Consensus       267 ~~l~~~l~~~~~~~gv~v~~~~~v~~i~~--~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          267 QKLAGALKAHVSDYDVDVIDSQSASKLVP--AATEGGLHQIETASGAVLKARSIIIATGAKW  326 (521)
T ss_dssp             HHHHHHHHHHHHTSCEEEECSCCEEEEEC--CSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEe--ccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            45666777778888999999999999986  421 236788888887899999999999854

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.00  E-value=4.7e-10  Score=106.69  Aligned_cols=57  Identities=14%  Similarity=0.033  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccC-CCc--EEEEeCCcc----EEEeCeEEEcCCc
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV-RGG--VTVVTSSGE----EFWGKKCVVTAGA  211 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~-~~~--~~v~~~~g~----~i~ad~vV~A~G~  211 (413)
                      ..+...+...+.+.+++++++++|++|..  +++ ++.  +.|++.+++    ++.+|+||+|+|.
T Consensus       127 ~~~~~~l~~~~~~~~~~i~~~~~V~~i~~--~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          127 MEFNDYLRWVASHFQEQSRYGEEVLRIEP--MLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHHHHHHHHTTCTTTEEESEEEEEEEE--EEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCEEEEEEE--ecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            45666676777777899999999999988  521 122  466666654    7999999999997

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.99  E-value=2.6e-09  Score=101.59  Aligned_cols=58  Identities=12%  Similarity=0.067  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHH-HHcCCeEecCceEEEEEeeeccCCCcEEEEeC--Cc--cEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLA-IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS--SG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~-~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g--~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+ ++.|++++++++|+++..  +  ++.+.+.+.  +|  +++.+|.||+|+|...+
T Consensus       215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          215 EDVTNALVGALAKNEKMKFMTSTKVVGGTN--N--GDSVSLEVEGKNGKRETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECSCEEEEEEE--C--SSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhhcCCcEEEeCCEEEEEEE--c--CCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence            46677888888 899999999999999988  6  334555543  56  57999999999998754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.99  E-value=6.3e-09  Score=101.88  Aligned_cols=62  Identities=13%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +  .+  .|.+.+|+++.+|.||+|+|...+ .++..+
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~--~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~  290 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEE--N--GA--VVRLKSGSVIQTDMLILAIGVQPESSLAKGA  290 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEG--G--GT--EEEETTSCEEECSEEEECSCEEECCHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEec--C--CC--EEEECCCCEEEcCEEEEccCCCCChHHHHhc
Confidence            56778888889999999999999999987  5  23  355678888999999999998755 355544

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.99  E-value=9.7e-09  Score=98.06  Aligned_cols=60  Identities=17%  Similarity=0.018  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc-----EEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-----EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-----~i~ad~vV~A~G~~~~  214 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  .++ +.+.+++.+++     ++.+|.||+|+|...+
T Consensus       226 d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~-~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          226 DQQMAELVAASMEERGIPFLRKTVPLSVEK--QDD-GKLLVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEETEEEEEEEE--CTT-SCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             CHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCC-CcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence            356777888888999999999999999987  532 33455543332     6999999999997543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.98  E-value=2e-09  Score=102.27  Aligned_cols=38  Identities=34%  Similarity=0.490  Sum_probs=34.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      +++||+|||||++|+++|..|++.|++|+|||+.+..|
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~G   40 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELG   40 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            36999999999999999999999999999999766554

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.97  E-value=2.1e-09  Score=102.67  Aligned_cols=40  Identities=35%  Similarity=0.605  Sum_probs=35.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      |+.++||+|||||++|+++|..|++.|++|+|||+.+..+
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~G   42 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLG   42 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            3446899999999999999999999999999999965543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.97  E-value=5.8e-09  Score=99.75  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +++ +.+.+++.+|+++.+|.||+|+|...+
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~-~~~~v~~~~G~~i~~D~vv~a~G~~p~  293 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSL--NTD-GSKHVTFESGKTLDVDVVMMAIGRIPR  293 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEE--CTT-SCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCC-ceEEEEECCCcEEEcCEEEECCCCccc
Confidence            46777888888999999999999999988  622 346788888888999999999998654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.97  E-value=2.5e-09  Score=96.09  Aligned_cols=57  Identities=12%  Similarity=0.164  Sum_probs=41.5

Q ss_pred             cHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEE-EeCCccEEEeCeEEEcCCcC
Q 015072          151 KPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTV-VTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v-~~~~g~~i~ad~vV~A~G~~  212 (413)
                      .+..+...+.+.+.+.|++++.+ +|+++ .  ++..+.+.+ ...++ ++.+|+||+|+|..
T Consensus        60 ~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~--~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           60 DGISFMAPWSEQCMRFGLKHEMV-GVEQI-L--KNSDGSFTIKLEGGK-TELAKAVIVCTGSA  117 (315)
T ss_dssp             CHHHHHHHHHHHHTTTCCEEECC-CEEEE-E--ECTTSCEEEEETTSC-EEEEEEEEECCCEE
T ss_pred             CHHHHHHHHHHHHHHcCcEEEEE-EEEEE-e--cCCCCcEEEEEecCC-EEEeCEEEEeeCCC
Confidence            34567777778888889999977 89999 7  621156663 22333 69999999999973

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.95  E-value=1.1e-08  Score=97.31  Aligned_cols=44  Identities=41%  Similarity=0.482  Sum_probs=38.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s~   49 (413)
                      ..+||+|||||++|+++|+.|+++|+ +|+|+|+.+..||+..+.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~   47 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT   47 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeec
Confidence            46899999999999999999999998 899999998887776554

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.95  E-value=4e-09  Score=100.64  Aligned_cols=39  Identities=31%  Similarity=0.409  Sum_probs=34.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      +.++||+|||||++|+++|..|+++|++|+|||+.+..+
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~G   41 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLG   41 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcC
Confidence            346899999999999999999999999999999965543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.92  E-value=9.2e-09  Score=98.71  Aligned_cols=45  Identities=36%  Similarity=0.443  Sum_probs=39.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~   49 (413)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+.+..||+..+.
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~   75 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTY   75 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEE
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeee
Confidence            346899999999999999999999999999999998887765543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.92  E-value=7.1e-09  Score=103.22  Aligned_cols=39  Identities=38%  Similarity=0.377  Sum_probs=35.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+.+..++
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG  428 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGG  428 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            468999999999999999999999999999999876654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.92  E-value=2.1e-08  Score=96.00  Aligned_cols=59  Identities=12%  Similarity=0.071  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccE-EEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEE-FWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~-i~ad~vV~A~G~~~~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +++ +.+.+.+++|++ +.+|.||+|+|...+
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKK--VSD-KNLSIHLSDGRIYEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE--SST-TCEEEEETTSCEEEEESEEEECCCBCCT
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEE--cCC-ceEEEEECCCcEEEECCEEEECCCCCcC
Confidence            46777888888999999999999999987  522 346777888887 999999999998765

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.92  E-value=7.3e-09  Score=100.06  Aligned_cols=37  Identities=32%  Similarity=0.390  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~   42 (413)
                      .++|++|||+|.+|+++|++|++. |.+|+|+|++...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            469999999999999999999998 8999999998654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.91  E-value=1.5e-08  Score=96.91  Aligned_cols=57  Identities=11%  Similarity=0.051  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC--Cc--cEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS--SG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g--~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++. ++++++++|+++..  +  ++.+.+...  +|  +++.+|.||+|+|...+
T Consensus       215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~--~--~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          215 EEMKRYAEKTFNEE-FYFDAKARVISTIE--K--EDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             HHHHHHHHHHHHTT-SEEETTCEEEEEEE--C--SSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             HHHHHHHHHHHhhC-cEEEECCEEEEEEE--c--CCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence            56777777777777 99999999999988  6  345556553  66  57999999999997544

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.90  E-value=8.7e-09  Score=98.16  Aligned_cols=60  Identities=22%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEE-----eCCccEEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVV-----TSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~-----~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +++ ..+.+.     +.+++++.+|.||+|+|...+
T Consensus       219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~-~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          219 DMEISKNFQRILQKQGFKFKLNTKVTGATK--KSD-GKIDVSIEAASGGKAEVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEE--CTT-SCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCceEEEEEE--cCC-ceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence            456777888888999999999999999988  622 225555     345667999999999998654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.90  E-value=1.7e-08  Score=97.05  Aligned_cols=35  Identities=31%  Similarity=0.579  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            46899999999999999999999999999999865

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.88  E-value=9.4e-09  Score=97.87  Aligned_cols=39  Identities=33%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      +.++||+|||||++|+++|..|++.|++|+|||+.+..|
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~G   42 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   42 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            346999999999999999999999999999999986554

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.88  E-value=3.5e-08  Score=96.24  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeecc-----------------CCCcEEEEeCCccEEEeCeEEEcCCcChh-
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD-----------------VRGGVTVVTSSGEEFWGKKCVVTAGAWVG-  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~-----------------~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-  214 (413)
                      ..+...+.+.+++.|+++++++.|+++..  +.                 .++.+.+...+|+++.+|.||+|+|...+ 
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  269 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSY--QVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET  269 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEE--ECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEec--cccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence            56777888888999999999999999976  31                 12456677788888999999999998765 


Q ss_pred             hhhhhh
Q 015072          215 KLVKKI  220 (413)
Q Consensus       215 ~l~~~~  220 (413)
                      .++..+
T Consensus       270 ~l~~~~  275 (565)
T 3ntd_A          270 QLARDA  275 (565)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            455544

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.87  E-value=1.2e-08  Score=95.28  Aligned_cols=59  Identities=12%  Similarity=0.119  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKK  219 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~  219 (413)
                      ..+.+.+.+.+++.|++++++++|++++.  +   +   +.+++|+++.+|.||+|+|.....++..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~---~---v~~~~g~~~~~D~vi~a~G~~~~~~l~~  276 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--H---E---IVDEKGNTIPADITILLPPYTGNPALKN  276 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--S---E---EEETTSCEEECSEEEEECCEECCHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--C---e---EEECCCCEEeeeEEEECCCCCccHHHHh
Confidence            56778888888999999999999999876  4   2   5667888899999999999877666554

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.87  E-value=1.4e-09  Score=96.18  Aligned_cols=42  Identities=31%  Similarity=0.388  Sum_probs=37.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ++||+|||||++|+++|+.|+++|++|+|+||.+..|++..+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~   43 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS   43 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence            389999999999999999999999999999999887765544

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.86  E-value=8.2e-09  Score=98.05  Aligned_cols=34  Identities=38%  Similarity=0.494  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++||+|||||++|+++|..|+++|++|+|||+..
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~   36 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY   36 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5899999999999999999999999999999973

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.86  E-value=2.2e-08  Score=95.63  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            346999999999999999999999999999999843

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.85  E-value=5.1e-09  Score=100.09  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC---CcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG---QKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g---~~V~lvE~~~~   41 (413)
                      +++||+|||||++|+++|..|++.|   .+|+|||+.+.
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            3589999999999999999999988   99999999764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.85  E-value=6e-09  Score=98.63  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~   42 (413)
                      +||+|||||++|+++|+.|+++  |.+|+|||+++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            6899999999999999999998  8999999998754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.84  E-value=1.3e-09  Score=104.11  Aligned_cols=61  Identities=15%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcCCCcc
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGLELP  226 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~~~p  226 (413)
                      +.+++.|+++++++.|+++..  +  +....+.+.+|+++.+|.||+|+|.+.+ .+++.+ |..+.
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~--~--~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~-g~~~~  326 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEG--N--EKVERVIDMNNHEYKVDALIFADGRRPDINPITQA-GGKLR  326 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEEC--S--SSCCEEEETTCCEEECSEEEECCCEEECCHHHHHT-TCCEE
T ss_pred             HHHHhCCcEEEeCCeeEEEec--C--CceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhc-CCCcc
Confidence            566778999999999999987  6  3444566788888999999999999866 476665 65443

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.84  E-value=1e-08  Score=94.70  Aligned_cols=39  Identities=21%  Similarity=0.339  Sum_probs=33.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..++.+|+|||||++|+++|..|...+.+|+|||+.+..
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            345789999999999999999997778999999997653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.83  E-value=1.4e-08  Score=96.14  Aligned_cols=34  Identities=38%  Similarity=0.473  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++||+|||||++|+++|..|++.|++|+|||+..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   36 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCC
Confidence            5899999999999999999999999999999973

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.81  E-value=4.7e-09  Score=101.48  Aligned_cols=37  Identities=32%  Similarity=0.483  Sum_probs=33.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~   41 (413)
                      ..+||+||||||.+|+.+|.+|++.| .+|+|||++..
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999987 69999999865

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.81  E-value=1.5e-08  Score=95.86  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~   42 (413)
                      ++||+|||||++|+++|+.|++.  |++|+|||+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999998  7899999997643

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.80  E-value=8.4e-09  Score=96.89  Aligned_cols=46  Identities=22%  Similarity=0.259  Sum_probs=36.8

Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .+.+.|++++.+++|+.+..  +  +.  .|.+.+|+++.+|++|+|+|...
T Consensus        69 ~~~~~gv~~~~~~~v~~i~~--~--~~--~v~~~~g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           69 AYAAQNIQLLGGTQVTAINR--D--RQ--QVILSDGRALDYDRLVLATGGRP  114 (431)
T ss_dssp             HHHHTTEEEECSCCEEEEET--T--TT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHhCCCEEEeCCEEEEEEC--C--CC--EEEECCCCEEECCEEEEcCCCCc
Confidence            34567999999999999988  5  23  46667787899999999999854

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.80  E-value=7.9e-08  Score=91.59  Aligned_cols=63  Identities=16%  Similarity=0.132  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKK  219 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~  219 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  +....+.++++ ++.+|.||+|+|...+ .+++.
T Consensus       226 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~--~~v~~v~~~~~-~i~~D~vi~a~G~~p~~~~l~~  289 (480)
T 3cgb_A          226 DGDMAEYIYKEADKHHIEILTNENVKAFKG--N--ERVEAVETDKG-TYKADLVLVSVGVKPNTDFLEG  289 (480)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEE--S--SBEEEEEETTE-EEECSEEEECSCEEESCGGGTT
T ss_pred             CHHHHHHHHHHHHHcCcEEEcCCEEEEEEc--C--CcEEEEEECCC-EEEcCEEEECcCCCcChHHHHh
Confidence            356778888889999999999999999987  5  23334556544 5999999999998754 34443

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.77  E-value=3.8e-08  Score=93.39  Aligned_cols=35  Identities=37%  Similarity=0.522  Sum_probs=33.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ++||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~~   40 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEV   40 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            69999999999999999999999999999999863

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.77  E-value=9.4e-08  Score=92.63  Aligned_cols=37  Identities=43%  Similarity=0.540  Sum_probs=33.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..++|++|||+|.+|+++|++|++.|++|+|+|++..
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3469999999999999999999999999999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.76  E-value=1.2e-08  Score=96.01  Aligned_cols=34  Identities=32%  Similarity=0.602  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHH---cCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAK---RGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~---~g~~V~lvE~~~   40 (413)
                      ..||+|||||++|+++|+.|++   .|++|+|||+.+
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~   40 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND   40 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence            3689999999999999999999   799999999875

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.75  E-value=1.9e-08  Score=96.99  Aligned_cols=36  Identities=36%  Similarity=0.418  Sum_probs=33.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~-~g~~V~lvE~~~~~   42 (413)
                      +||+||||||.+|+.+|.+|++ .+.+|+|||++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            5899999999999999999999 68999999998644

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.74  E-value=9.6e-09  Score=95.42  Aligned_cols=51  Identities=29%  Similarity=0.466  Sum_probs=42.6

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCCCC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~~~~~~s~~~   51 (413)
                      |..|+.++||+|||||++|+++|++|+++ |++|+|+|+++..||...+...
T Consensus         1 m~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~   52 (399)
T 1v0j_A            1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAE   52 (399)
T ss_dssp             ---CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEEC
T ss_pred             CCcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccc
Confidence            55566679999999999999999999999 9999999999988877766543

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.73  E-value=2.9e-08  Score=95.90  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~-~g~~V~lvE~~~~   41 (413)
                      .+||+||||+|.+|+.+|.+|++ .|++|+|||++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            47999999999999999999998 5789999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.72  E-value=1.6e-08  Score=94.37  Aligned_cols=41  Identities=22%  Similarity=0.219  Sum_probs=32.9

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccCC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFDF   41 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~~   41 (413)
                      |..+.+++||+|||||++|+++|..|++.|.  +|+|||+.+.
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~   43 (408)
T 2gqw_A            1 MSQEALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   43 (408)
T ss_dssp             -----CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCCCCCCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCC
Confidence            5544567899999999999999999999998  5999999754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.70  E-value=3.9e-08  Score=92.92  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~   42 (413)
                      +||+|||||++|+++|..|++.  |++|+|||+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            4799999999999999999998  9999999997653

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.70  E-value=6.4e-08  Score=93.26  Aligned_cols=36  Identities=31%  Similarity=0.490  Sum_probs=33.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+||+||||+|.+|+.+|.+|++ |.+|+|+|++...
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            45899999999999999999999 9999999998653

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.69  E-value=1.6e-07  Score=88.20  Aligned_cols=61  Identities=16%  Similarity=0.083  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCc--cEEEeCeEEEcCCcChhhhhhhh
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSG--EEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ...+.+.+.++++|+++++++.|++++.  +    .+.+...+|  +++.+|.||+|+|...+.++...
T Consensus       201 ~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~----~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~  263 (430)
T 3hyw_A          201 ASKRLVEDLFAERNIDWIANVAVKAIEP--D----KVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASA  263 (430)
T ss_dssp             THHHHHHHHHHHTTCEEECSCEEEEECS--S----EEEEECTTSCEEEEECSEEEEECEEECCHHHHTT
T ss_pred             HHHHHHHHHHHhCCeEEEeCceEEEEeC--C----ceEEEeeCCCceEeecceEEEeccCCCchHHHhc
Confidence            3445666778889999999999999866  3    445555444  47999999999998766665544

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.69  E-value=4.7e-08  Score=92.51  Aligned_cols=34  Identities=29%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~   41 (413)
                      +||+|||||++|+++|..|++.  |++|+|||+.+.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            5899999999999999999998  999999999764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.67  E-value=4.2e-07  Score=86.05  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++||+|||||++|+++|..|++.|++|+|||++.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCC
Confidence            46899999999999999999999999999999954

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.66  E-value=6.9e-09  Score=95.23  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      -.|++|||||++|+++|..|++.| +|+|||+++.
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCC
Confidence            469999999999999999999999 9999999764

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.61  E-value=2.1e-07  Score=90.58  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=33.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~-~g~~V~lvE~~~~~   42 (413)
                      .++|++|||+|.+|+++|.+|++ .|.+|+|||++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            46999999999999999999999 79999999998643

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.60  E-value=2.1e-08  Score=93.41  Aligned_cols=56  Identities=20%  Similarity=0.123  Sum_probs=44.9

Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +.+++.|++++.++++..++.  +  .....+.+++|+++.+|.||+|+|...+.++...
T Consensus       210 ~~l~~~gi~v~~~~~v~~v~~--~--~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~  265 (401)
T 3vrd_B          210 FGTENALIEWHPGPDAAVVKT--D--TEAMTVETSFGETFKAAVINLIPPQRAGKIAQSA  265 (401)
T ss_dssp             TTSTTCSEEEECTTTTCEEEE--E--TTTTEEEETTSCEEECSEEEECCCEEECHHHHHT
T ss_pred             HHHHhcCcEEEeCceEEEEEe--c--ccceEEEcCCCcEEEeeEEEEecCcCCchhHhhc
Confidence            334567899999999999887  6  4456788899999999999999998766666654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.58  E-value=2.3e-06  Score=84.94  Aligned_cols=39  Identities=28%  Similarity=0.392  Sum_probs=35.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ..+||+|||||++|+++|..|+++|++|+|||+.+..++
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg  410 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG  410 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence            358999999999999999999999999999999876643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.58  E-value=2e-07  Score=87.62  Aligned_cols=54  Identities=13%  Similarity=0.033  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..+.+.+.+.+++.|++++++++|++++.  .      .+.+++|+++.+|.||+|+|...+
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~--~------~v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAING--N------EITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEET--T------EEEETTSCEEECSEEEECCCEEES
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEecC--C------eeeecCCeEEeeeeEEEEeceecC
Confidence            45566777888899999999999988766  3      356688888999999999997543

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.58  E-value=1.2e-07  Score=90.79  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .++|++|||+|.+|+++|++|++.|++|+|||++..
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            469999999999999999999999999999999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.55  E-value=3.9e-07  Score=87.00  Aligned_cols=65  Identities=12%  Similarity=0.026  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc----EEEeCeEEEcCCcChhhhhhhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE----EFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~----~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      +..+.+.+.+.+++.||+++++++|++++.  +  .........+|+    ++.+|.||+|+|...+++..++
T Consensus       271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~--~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l  339 (502)
T 4g6h_A          271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEE--K--QLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDL  339 (502)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEECS--S--EEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHH
T ss_pred             CHHHHHHHHHHHHhcceeeecCceEEEEeC--C--ceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhH
Confidence            367788888999999999999999999977  4  233344455653    6999999999997665554443

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.54  E-value=9.1e-07  Score=83.85  Aligned_cols=54  Identities=24%  Similarity=0.296  Sum_probs=41.5

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-C--cc--EEEeCeEEEcCCcChh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-S--GE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~--g~--~i~ad~vV~A~G~~~~  214 (413)
                      +.+.+.+++.|++++++++|+++..  +  ++.+.+.+. +  |+  ++.+|.||+|+|...+
T Consensus       214 ~~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~  272 (464)
T 2eq6_A          214 ALLRRALEKEGIRVRTKTKAVGYEK--K--KDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR  272 (464)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEEE--E--TTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHhcCCEEEcCCEEEEEEE--e--CCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence            3445666778999999999999988  6  344556554 5  65  7999999999997654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.54  E-value=1.1e-07  Score=87.45  Aligned_cols=44  Identities=32%  Similarity=0.534  Sum_probs=39.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~   49 (413)
                      ..+||+|||||++|+++|++|+++|++|+|+|+.+..||...+.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~   71 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDC   71 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCE
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCcccee
Confidence            46899999999999999999999999999999998887766554

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.53  E-value=2.5e-07  Score=88.61  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=34.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..++|++|||+|.+|+.+|++|++.|.+|+|||++..
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4569999999999999999999999999999998853

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.50  E-value=7.6e-07  Score=87.27  Aligned_cols=34  Identities=38%  Similarity=0.574  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..+||+|||||++|+++|..|+++|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            4689999999999999999999999999999974

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.50  E-value=1.8e-06  Score=80.99  Aligned_cols=65  Identities=18%  Similarity=0.267  Sum_probs=47.5

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeec-cCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcCCC
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKD-DVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGLE  224 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~-~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~~  224 (413)
                      +.+.+.+++.|++++++++|+++..  . +++....+.+.+|+++.+|.||+|+|...+ .+++.+ |+.
T Consensus       195 ~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~-gl~  261 (431)
T 1q1r_A          195 AFYEHLHREAGVDIRTGTQVCGFEM--STDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAA-GLQ  261 (431)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEEE--CTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHT-TCC
T ss_pred             HHHHHHHHhCCeEEEeCCEEEEEEe--ccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhcc-CCC
Confidence            3445666778999999999999975  3 212334677888888999999999998754 566654 543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.49  E-value=1.3e-07  Score=86.25  Aligned_cols=46  Identities=28%  Similarity=0.393  Sum_probs=40.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc-CCCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF-DFLHHRGSSHG   50 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~-~~~~~~~~s~~   50 (413)
                      ...+||+|||||++|+++|+.|+++|++|+|+|+. +..||+..+..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~   88 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFH   88 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEEC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeec
Confidence            45689999999999999999999999999999999 87777665543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.48  E-value=1.7e-06  Score=86.64  Aligned_cols=39  Identities=31%  Similarity=0.364  Sum_probs=35.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.+..++
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG  426 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG  426 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCC
Confidence            457999999999999999999999999999999877654

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.48  E-value=1.2e-07  Score=85.55  Aligned_cols=41  Identities=39%  Similarity=0.385  Sum_probs=35.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHH--cCCcEEEEcccCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAK--RGQKTLLLEQFDFLHHRG   46 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~--~g~~V~lvE~~~~~~~~~   46 (413)
                      .++||+|||||++|+++|++|++  .|++|+|||+.+..|+..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~  106 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceE
Confidence            35899999999999999999986  499999999988776543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.46  E-value=5.4e-07  Score=92.79  Aligned_cols=37  Identities=35%  Similarity=0.505  Sum_probs=34.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      .+||+|||||++|+++|..|+++|++|+|||+++..+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            5799999999999999999999999999999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.43  E-value=1.9e-06  Score=82.10  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  217 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ  217 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            35799999999999999999999999999998754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.43  E-value=2.1e-06  Score=81.24  Aligned_cols=54  Identities=20%  Similarity=0.198  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---CccEEEeCeEEEcCCcChh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.+.+.+++.|++++++++|+++..  +  ++.+.+.+.   +++++.+|.||+|+|...+
T Consensus       215 ~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          215 AIIKKRLKKKGVEVVTNALAKGAEE--R--EDGVTVTYEANGETKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             HHHHHHHHHTTCEEEESEEEEEEEE--E--TTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEE--e--CCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence            3445566778999999999999987  6  334555543   4557999999999997654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.43  E-value=1.7e-07  Score=85.89  Aligned_cols=46  Identities=26%  Similarity=0.488  Sum_probs=39.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      +||+|||||++|+++|++|+++|++|+|+|+++..||...+....+
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g   47 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG   47 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCC
Confidence            7999999999999999999999999999999988877666544333

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.42  E-value=2.3e-06  Score=80.75  Aligned_cols=54  Identities=17%  Similarity=0.127  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+.+++.|++++++++|+++..  +  +....+.+ +++++.+|.||+|+|...+
T Consensus       194 ~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          194 TDVLTEEMEANNITIATGETVERYEG--D--GRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHHHHHHHHTTTEEEEESCCEEEEEC--S--SBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             HHHHHHHHHhCCCEEEcCCEEEEEEc--c--CcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence            34455667778999999999999987  6  23334555 4456999999999997654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.41  E-value=3.1e-06  Score=78.74  Aligned_cols=59  Identities=20%  Similarity=0.273  Sum_probs=45.0

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhhcCCC
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKISGLE  224 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~~g~~  224 (413)
                      +.+.+.+++.|++++++++|+++..     +   .|++.+|+++.+|.||+|+|...+ .+++.. |+.
T Consensus       191 ~~l~~~l~~~GV~i~~~~~v~~i~~-----~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-gl~  250 (408)
T 2gqw_A          191 DFVARYHAAQGVDLRFERSVTGSVD-----G---VVLLDDGTRIAADMVVVGIGVLANDALARAA-GLA  250 (408)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEET-----T---EEEETTSCEEECSEEEECSCEEECCHHHHHH-TCC
T ss_pred             HHHHHHHHHcCcEEEeCCEEEEEEC-----C---EEEECCCCEEEcCEEEECcCCCccHHHHHhC-CCC
Confidence            3455667788999999999998863     2   466678888999999999998754 566655 543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.37  E-value=1.9e-06  Score=82.08  Aligned_cols=53  Identities=21%  Similarity=0.081  Sum_probs=40.8

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC----ccEEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS----GEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~----g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+++.|++++++++|+++..  +  ++.+.+++.+    |+++.+|.||+|+|...+
T Consensus       231 ~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~  287 (482)
T 1ojt_A          231 VWQKQNEYRFDNIMVNTKTVAVEP--K--EDGVYVTFEGANAPKEPQRYDAVLVAAGRAPN  287 (482)
T ss_dssp             HHHHHHGGGEEEEECSCEEEEEEE--E--TTEEEEEEESSSCCSSCEEESCEEECCCEEEC
T ss_pred             HHHHHHHhcCCEEEECCEEEEEEE--c--CCeEEEEEeccCCCceEEEcCEEEECcCCCcC
Confidence            345566778999999999999988  6  3445565554    667999999999998654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.37  E-value=3.1e-07  Score=88.23  Aligned_cols=48  Identities=27%  Similarity=0.314  Sum_probs=41.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~   53 (413)
                      +.+||+|||||++|+++|+.|+++|++|+|+|+.+..||+..+....+
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g   59 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDG   59 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC
Confidence            458999999999999999999999999999999999887766544333

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.36  E-value=3.9e-07  Score=84.05  Aligned_cols=43  Identities=26%  Similarity=0.478  Sum_probs=38.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~   49 (413)
                      ++||+|||||++|+++|+.|+++|++|+|+|+++..||...+.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~   45 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA   45 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccc
Confidence            4799999999999999999999999999999998887766553

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.36  E-value=5.1e-06  Score=78.77  Aligned_cols=53  Identities=21%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC-Cc--cEEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS-SG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g--~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+++.|++++++++|+++..  +  ++.+.+... +|  +++.+|.||+|+|...+
T Consensus       217 ~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          217 EIEKQFKKLGVTILTATKVESIAD--G--GSQVTVTVTKDGVAQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHHHHHHTCEEECSCEEEEEEE--C--SSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHcCCEEEeCcEEEEEEE--c--CCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence            344566778999999999999988  6  334555543 55  57999999999997654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.36  E-value=4.7e-06  Score=79.51  Aligned_cols=60  Identities=17%  Similarity=0.133  Sum_probs=47.1

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      +.+.+.+++.|+++++++.|+++..  +  ++.+.+++.+|+++.+|.||+|+|...+ .++...
T Consensus       230 ~~~~~~l~~~GV~v~~~~~V~~i~~--~--~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~  290 (493)
T 1m6i_A          230 NWTMEKVRREGVKVMPNAIVQSVGV--S--SGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTG  290 (493)
T ss_dssp             HHHHHHHHTTTCEEECSCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECCCEEECCTTHHHH
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEe--c--CCeEEEEECCCCEEECCEEEECCCCCccHHHHHHc
Confidence            3445566778999999999999987  5  3456788888988999999999998765 455544

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.35  E-value=5.1e-06  Score=78.43  Aligned_cols=55  Identities=15%  Similarity=0.100  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          155 AVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       155 ~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.+.+.+.+++.|++++++++|+++..  .  ++.+.+.++++ ++.+|.||+|+|...+
T Consensus       191 ~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~~v~v~~~~g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          191 MVAEVQKSLEKQAVIFHFEETVLGIEE--T--ANGIVLETSEQ-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             HHHHHHHHHHTTTEEEEETCCEEEEEE--C--SSCEEEEESSC-EEEESEEEECSCCBCC
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEc--c--CCeEEEEECCC-EEEeCEEEECcCCCCC
Confidence            344555667778999999999999997  5  34557777777 6999999999997543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.32  E-value=6.8e-06  Score=77.58  Aligned_cols=54  Identities=11%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEE-EEeCCccEEEeCeEEEcCCcChh
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVT-VVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .+.+.+.+++.|++++++++|+++..  +  ++.+. +.+ +|+++.+|.||+|+|...+
T Consensus       194 ~~~l~~~l~~~Gv~i~~~~~v~~i~~--~--~~~v~~v~~-~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          194 TDILAKDYEAHGVNLVLGSKVAAFEE--V--DDEIITKTL-DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHHHHHHHHTTCEEEESSCEEEEEE--E--TTEEEEEET-TSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHCCCEEEcCCeeEEEEc--C--CCeEEEEEe-CCCEEECCEEEECcCCCCC
Confidence            34455667788999999999999987  5  33343 444 6777999999999997654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.30  E-value=6.4e-06  Score=78.62  Aligned_cols=53  Identities=15%  Similarity=0.141  Sum_probs=39.9

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      +.+.+.+++.|++++++++|+++..  +  +....+.+ +|+++.+|.||+|+|...+
T Consensus       240 ~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          240 DLMAKNMEEHGIQLAFGETVKEVAG--N--GKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHHHHHHTTTCEEEETCCEEEEEC--S--SSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHhCCeEEEeCCEEEEEEc--C--CcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence            3455667778999999999999987  5  23333545 5667999999999997644

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.29  E-value=5.1e-06  Score=78.56  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||||.+|+.+|..|++.|.+|+|+|+.+.
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  205 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER  205 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence            35799999999999999999999999999998754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.28  E-value=5.3e-06  Score=78.80  Aligned_cols=54  Identities=24%  Similarity=0.203  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeC---Cc--cEEEeCeEEEcCCcChh
Q 015072          157 SMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTS---SG--EEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~vV~A~G~~~~  214 (413)
                      +.+.+.+++.|++++++++|+++..  +  ++.+.+...   +|  +++.+|.||+|+|...+
T Consensus       222 ~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          222 KQFQRSLEKQGMKFKLKTKVVGVDT--S--GDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHHHHHHHSSCCEECSEEEEEEEC--S--SSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred             HHHHHHHHHcCCEEEeCCEEEEEEE--c--CCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence            3445667788999999999999988  6  334555432   34  57999999999998654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.27  E-value=4.8e-06  Score=76.27  Aligned_cols=54  Identities=22%  Similarity=0.273  Sum_probs=41.3

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      .+.+.+++.|++++++++|+++..  +      .+.+++|+ +.+|.||+|+|...+ .+++.+
T Consensus       188 ~l~~~l~~~gV~i~~~~~v~~i~~--~------~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~  242 (367)
T 1xhc_A          188 MIKDMLEETGVKFFLNSELLEANE--E------GVLTNSGF-IEGKVKICAIGIVPNVDLARRS  242 (367)
T ss_dssp             HHHHHHHHTTEEEECSCCEEEECS--S------EEEETTEE-EECSCEEEECCEEECCHHHHHT
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEe--e------EEEECCCE-EEcCEEEECcCCCcCHHHHHhC
Confidence            344566778999999999998865  3      25567888 999999999998755 365554

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.25  E-value=6.7e-07  Score=85.49  Aligned_cols=57  Identities=18%  Similarity=0.100  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC------CcEEEEeCCc-----cEEEeCeEEEcCCc
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR------GGVTVVTSSG-----EEFWGKKCVVTAGA  211 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~------~~~~v~~~~g-----~~i~ad~vV~A~G~  211 (413)
                      .++..+|...+.+.+..++++++|+++..  .+.+      ..+.|++.++     +++.|+.||+|+|.
T Consensus       145 ~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~--~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          145 LEFEDYMRWCAQQFSDVVAYGEEVVEVIP--GKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHHHHTTGGGEEESEEEEEEEE--ECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCceEcceEEEeecc--ccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence            56667777777776777889999999987  5321      2477776433     26899999999994

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.17  E-value=1.3e-06  Score=85.54  Aligned_cols=40  Identities=25%  Similarity=0.429  Sum_probs=35.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ...+||+|||||++|+++|+.|+++|++|+|||+.+..++
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg   83 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG   83 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCC
Confidence            3468999999999999999999999999999999887654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.07  E-value=6.2e-06  Score=74.29  Aligned_cols=36  Identities=39%  Similarity=0.393  Sum_probs=33.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      +||+|||||.+|+.+|+.|+++|++|+|+|+.+...
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~   37 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM   37 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence            689999999999999999999999999999987543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.06  E-value=2.2e-05  Score=74.40  Aligned_cols=35  Identities=11%  Similarity=0.225  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~   41 (413)
                      ..+|+|||||.+|+-+|..|++.  +.+|+++++.+.
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            46899999999999999999999  899999998754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.06  E-value=3.8e-06  Score=79.11  Aligned_cols=39  Identities=28%  Similarity=0.426  Sum_probs=35.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.+..|+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG  159 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG  159 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence            458999999999999999999999999999999876643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.05  E-value=4.5e-05  Score=68.26  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~  178 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  178 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            579999999999999999999999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.04  E-value=5.5e-05  Score=72.09  Aligned_cols=33  Identities=24%  Similarity=0.187  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..+++|||||..|+-+|..|++.|.+|+++++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  217 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRS  217 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence            357999999999999999999999999999874

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.04  E-value=2.9e-05  Score=73.16  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            4899999999999999999999999999998653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.02  E-value=4.5e-05  Score=68.79  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~  185 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRP  185 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC
Confidence            579999999999999999999999999998864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.97  E-value=5.4e-05  Score=69.25  Aligned_cols=56  Identities=13%  Similarity=0.121  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHcC-CeEecCceEEEEEeeeccCCCcEEEEeCCccEEE-eCeEEEcCCcChhh
Q 015072          156 VSMFQTLAIKNG-AVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFW-GKKCVVTAGAWVGK  215 (413)
Q Consensus       156 ~~~l~~~~~~~g-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~-ad~vV~A~G~~~~~  215 (413)
                      .+.+.+.+++.| ++++.+++|+++..  +  .+.+.+.+.+|+++. +|.||+|+|...+.
T Consensus       217 ~~~l~~~l~~~g~v~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          217 RQRLGNVIKQGARIEMNVHYTVKDIDF--N--NGQYHISFDSGQSVHTPHEPILATGFDATK  274 (369)
T ss_dssp             HHHHHHHHHTTCCEEEECSCCEEEEEE--E--TTEEEEEESSSCCEEESSCCEECCCBCGGG
T ss_pred             HHHHHHHHhhCCcEEEecCcEEEEEEe--c--CCceEEEecCCeEeccCCceEEeeccCCcc
Confidence            344555566776 99999999999976  5  345667778887665 59999999987653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.96  E-value=6.6e-06  Score=82.93  Aligned_cols=43  Identities=35%  Similarity=0.436  Sum_probs=38.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ..++|+|||||++|+++|+.|+++|++|+|+|+.+..||+..+
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~  319 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT  319 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceee
Confidence            3579999999999999999999999999999999888776544

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.96  E-value=6.5e-06  Score=81.44  Aligned_cols=43  Identities=35%  Similarity=0.436  Sum_probs=38.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+..||...+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~  148 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT  148 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            4589999999999999999999999999999999888776544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.93  E-value=5.3e-05  Score=69.10  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~  196 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH  196 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            479999999999999999999999999998864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.90  E-value=0.00014  Score=69.83  Aligned_cols=32  Identities=25%  Similarity=0.196  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            46999999999999999999999999999874

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.82  E-value=0.00016  Score=68.51  Aligned_cols=35  Identities=29%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||||..|+-+|..|++.|.+|+++++.+.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  206 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR  206 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            35799999999999999999999999999998653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.81  E-value=0.0003  Score=68.77  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+++|||||.+|+-+|..|++.|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999875

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.81  E-value=2e-05  Score=76.31  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=49.9

Q ss_pred             EEEecCCeeecHHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccC-CCcEEEEeCCccEEEeCeEEEcCCc
Q 015072          141 GVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV-RGGVTVVTSSGEEFWGKKCVVTAGA  211 (413)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~g~~i~ad~vV~A~G~  211 (413)
                      +++++.+|.   ..+.++|.+.+...|++++++++|.+|..  +++ +....|.+.+|++++||+||.....
T Consensus       369 g~~yp~GG~---g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~--~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~  435 (650)
T 1vg0_A          369 PFLFPLYGQ---GELPQCFCRMCAVFGGIYCLRHSVQCLVV--DKESRKCKAVIDQFGQRIISKHFIIEDSY  435 (650)
T ss_dssp             SEEEETTCT---THHHHHHHHHHHHTTCEEESSCCEEEEEE--ETTTCCEEEEEETTSCEEECSEEEEEGGG
T ss_pred             ceEEeCCch---hHHHHHHHHHHHHcCCEEEeCCEeeEEEE--eCCCCeEEEEEeCCCCEEEcCEEEEChhh
Confidence            344444443   67889999999999999999999999998  742 2344566678989999999985543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.76  E-value=9.7e-05  Score=66.05  Aligned_cols=35  Identities=29%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~  188 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT  188 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC
Confidence            35799999999999999999999999999998643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.76  E-value=0.00015  Score=65.30  Aligned_cols=35  Identities=31%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~  207 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH  207 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            35799999999999999999999999999998643

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.71  E-value=2.3e-05  Score=73.82  Aligned_cols=38  Identities=24%  Similarity=0.197  Sum_probs=34.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHH-c------CCcEEEEcccCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAK-R------GQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~-~------g~~V~lvE~~~~~~~   44 (413)
                      .+||+|||||++|+++|..|++ +      |.+|+|||+.+..++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg   47 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG   47 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCC
Confidence            5799999999999999999999 7      999999999876543

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.70  E-value=2.7e-05  Score=74.20  Aligned_cols=39  Identities=21%  Similarity=0.373  Sum_probs=34.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~   42 (413)
                      ++.++||+|||||++|+++|..|+++  |.+|+|||+.+..
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            44568999999999999999999887  8899999998643

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.68  E-value=2.7e-05  Score=76.44  Aligned_cols=36  Identities=25%  Similarity=0.428  Sum_probs=33.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcC--------CcEEEEcccC-CC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRG--------QKTLLLEQFD-FL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g--------~~V~lvE~~~-~~   42 (413)
                      .++|+|||||++|+++|+.|+++|        ++|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            478999999999999999999998        9999999987 66

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.67  E-value=0.00022  Score=68.66  Aligned_cols=35  Identities=17%  Similarity=0.182  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            35799999999999999999999999999999764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.66  E-value=0.00016  Score=64.66  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~  188 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP  188 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC
Confidence            579999999999999999999999999998753

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.64  E-value=0.00045  Score=61.38  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  176 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRD  176 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCC
Confidence            3579999999999999999999999999998754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.64  E-value=0.0002  Score=64.24  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+++|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  185 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD  185 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            579999999999999999999999999999754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.63  E-value=0.00017  Score=64.22  Aligned_cols=33  Identities=30%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~  180 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRD  180 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCC
Confidence            579999999999999999999999999998764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.61  E-value=4.8e-05  Score=78.94  Aligned_cols=38  Identities=24%  Similarity=0.361  Sum_probs=34.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~   44 (413)
                      .+||+|||||++|+++|+.|+++|+ +|+|||+.+..||
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG  225 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG  225 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCST
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCc
Confidence            5799999999999999999999999 7999999876654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.61  E-value=5.1e-05  Score=71.54  Aligned_cols=38  Identities=24%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~~~   43 (413)
                      ..+||+|||||++|+.+|..|+++|  ++|+|||+.+..+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence            4589999999999999999999998  9999999987664

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.57  E-value=0.0011  Score=63.80  Aligned_cols=35  Identities=20%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            45799999999999999999999999999998764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.56  E-value=0.00028  Score=62.69  Aligned_cols=33  Identities=36%  Similarity=0.329  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~  177 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  177 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCc
Confidence            579999999999999999999999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.51  E-value=0.00023  Score=68.57  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            35799999999999999999999999999999764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.51  E-value=0.00057  Score=61.26  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~  187 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRD  187 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecC
Confidence            579999999999999999999999999998754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.50  E-value=0.00029  Score=62.11  Aligned_cols=52  Identities=13%  Similarity=0.211  Sum_probs=39.4

Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      +.+.+.|++++. ++|+++..  +   +  .+.+.+|+++.+|.||+|+|...+ .++..+
T Consensus       182 ~~l~~~gv~i~~-~~v~~i~~--~---~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~  234 (297)
T 3fbs_A          182 ALLAARGVRVET-TRIREIAG--H---A--DVVLADGRSIALAGLFTQPKLRITVDWIEKL  234 (297)
T ss_dssp             HHHHHTTCEEEC-SCEEEEET--T---E--EEEETTSCEEEESEEEECCEEECCCSCHHHH
T ss_pred             HHHHHCCcEEEc-ceeeeeec--C---C--eEEeCCCCEEEEEEEEEccCcccCchhHHhc
Confidence            345567999985 89999877  5   2  677788888999999999997633 555554

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.46  E-value=0.00041  Score=62.31  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~  192 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  192 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCC
Confidence            3579999999999999999999999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.39  E-value=0.00035  Score=62.94  Aligned_cols=34  Identities=24%  Similarity=0.324  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~  188 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD  188 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCC
Confidence            3579999999999999999999999999998754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.32  E-value=0.0019  Score=60.82  Aligned_cols=35  Identities=11%  Similarity=0.104  Sum_probs=29.7

Q ss_pred             CccEEEECCCHHHHHHHHHHH--------------------HcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLA--------------------KRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~--------------------~~g~-~V~lvE~~~~   41 (413)
                      ..+|+|||+|..|+-+|..|+                    +.|. +|+||++...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            357999999999999999999                    5576 6999988654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.15  E-value=0.0016  Score=61.22  Aligned_cols=58  Identities=16%  Similarity=0.093  Sum_probs=38.8

Q ss_pred             HHHHHHHHHH------cCCeEecCceEEEEEeeeccCCCcEEEEe--------------CCc--cEEEeCeEEEcCCcCh
Q 015072          156 VSMFQTLAIK------NGAVLRDNTEVKTVLKVKDDVRGGVTVVT--------------SSG--EEFWGKKCVVTAGAWV  213 (413)
Q Consensus       156 ~~~l~~~~~~------~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--------------~~g--~~i~ad~vV~A~G~~~  213 (413)
                      .+.+.+.+.+      .|+++++++.+++|..  ++.-..+.+..              .+|  +++.+|.||+|+|...
T Consensus       249 ~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p  326 (456)
T 1lqt_A          249 IKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG  326 (456)
T ss_dssp             HHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEEC
T ss_pred             HHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEcccccc
Confidence            4445555555      6899999999999987  52112244331              134  3699999999999866


Q ss_pred             hh
Q 015072          214 GK  215 (413)
Q Consensus       214 ~~  215 (413)
                      ..
T Consensus       327 ~~  328 (456)
T 1lqt_A          327 VP  328 (456)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.08  E-value=0.0015  Score=62.66  Aligned_cols=33  Identities=36%  Similarity=0.329  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~  388 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  388 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCc
Confidence            579999999999999999999999999998754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.98  E-value=0.0023  Score=66.05  Aligned_cols=33  Identities=12%  Similarity=0.087  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|+|||+|..|+-+|..|++.|.+|+|||+.+
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~  317 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARS  317 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            579999999999999999999999999999854

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.96  E-value=0.00092  Score=52.65  Aligned_cols=36  Identities=17%  Similarity=0.434  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ....|+|||+|..|..+|..|.+.|.+|+++|+.+.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            456899999999999999999999999999998653

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.94  E-value=0.014  Score=56.21  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~  219 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP  219 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence            3579999999999999999999999999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.83  E-value=0.0012  Score=51.02  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..++|+|+|..|..+|..|.++|++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.74  E-value=0.0034  Score=58.90  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=30.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..+|+|||||.+|+-+|..+.+.|. +|+++++.+
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            3579999999999999999999997 599998764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.68  E-value=0.015  Score=60.37  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      .+|+|||||.+|+-+|..|++.|. +|+|+++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            389999999999999999999996 899999854

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.64  E-value=0.0017  Score=49.90  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|+|||+|..|..+|..|.+.|++|+++|+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999753

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.63  E-value=0.0091  Score=55.78  Aligned_cols=52  Identities=12%  Similarity=-0.056  Sum_probs=37.0

Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe--CC-----ccEEEeCeEEEcCCcChhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT--SS-----GEEFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~-----g~~i~ad~vV~A~G~~~~~  215 (413)
                      .+.+.+++.|++++++++|++|+.  +    .+.+..  .+     ++++.+|.||+|+|.....
T Consensus       213 ~~~~~l~~~gI~~~~~~~v~~v~~--~----~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~  271 (437)
T 3sx6_A          213 ILTKGLKEEGIEAYTNCKVTKVED--N----KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVP  271 (437)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEET--T----EEEEEEECTTSCEEEEEEEECSEEEEECCEECCH
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEC--C----eEEEEecccCCccccceEEEEeEEEEcCCCcCch
Confidence            344566778999999999999976  4    233332  33     4579999999999854433

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.55  E-value=0.0028  Score=48.82  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +-.|+|||.|..|..+|..|.+.|++|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            4579999999999999999999999999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.52  E-value=0.0058  Score=55.14  Aligned_cols=33  Identities=18%  Similarity=0.371  Sum_probs=29.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|.+|+-+|..|++.| +|+++.+..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            357999999999999999999998 699998763

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.45  E-value=0.003  Score=46.81  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~   40 (413)
                      ...|+|+|+|..|..++..|.+.| ++|+++++..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            357999999999999999999999 8999999853

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.43  E-value=0.0044  Score=48.56  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +..++|+|+|..|..+|..|.+.|++|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            356999999999999999999999999999986

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.42  E-value=0.38  Score=46.76  Aligned_cols=46  Identities=26%  Similarity=0.398  Sum_probs=40.5

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCC
Q 015072            2 EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS   47 (413)
Q Consensus         2 ~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~   47 (413)
                      ..+.++|||+|||+|+.|+.+|..|++.|++|++||+++..||..+
T Consensus         3 ~~~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            3 DNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             CCCCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             ccCCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence            4455689999999999999999999999999999999998776543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.30  E-value=0.004  Score=55.29  Aligned_cols=40  Identities=35%  Similarity=0.637  Sum_probs=30.8

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      |+|+++..+|+|||+|..|.++|+.|+..+.  +|+++|...
T Consensus         1 ~~m~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            1 MEMVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             ------CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            5543445789999999999999999999987  899999764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.27  E-value=0.035  Score=52.81  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~   40 (413)
                      .+|+|||+|.+|+-++..|+++  +.+|+++-+.+
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            5799999999999999999986  67999997754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.24  E-value=0.0037  Score=55.20  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|.|||+|..|...|..++..|++|+|+|..+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.20  E-value=0.0047  Score=53.97  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|..+|..|++.|++|+++|+.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            579999999999999999999999999999753

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=96.16  E-value=0.034  Score=48.93  Aligned_cols=54  Identities=7%  Similarity=0.040  Sum_probs=35.7

Q ss_pred             HHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh-hhhhhh
Q 015072          163 AIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG-KLVKKI  220 (413)
Q Consensus       163 ~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~-~l~~~~  220 (413)
                      +.+.|+.++.+ .++.+..  ++ .....+++.+|+++.+|.+|+++|...+ .++..+
T Consensus       190 l~~~g~~~~~~-~v~~~~~--~~-~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~  244 (304)
T 4fk1_A          190 LSNKNIPVITE-SIRTLQG--EG-GYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQL  244 (304)
T ss_dssp             HHTTTCCEECS-CEEEEES--GG-GCCCEEEETTSCEECCCEEEECCEEECSSCHHHHT
T ss_pred             hhccceeEeee-eEEEeec--CC-CeeeeeeccccceeeecceeeeeccccCChhhhhc
Confidence            34467777754 4777766  52 2344577889988999999998886543 444444

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.12  E-value=0.0054  Score=56.25  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            57999999999999999999999999999987654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.06  E-value=0.0051  Score=54.34  Aligned_cols=40  Identities=33%  Similarity=0.425  Sum_probs=31.5

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |....+.++|.|||.|..|...|..|++.|++|+++++.+
T Consensus         1 M~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            1 MSLTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4433345689999999999999999999999999999764

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.02  E-value=0.0078  Score=53.78  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      .++|+|||+|..|..+|..|++.|+ +|+|+|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            4689999999999999999999998 999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.01  E-value=0.0067  Score=46.68  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|+|+|+|..|..+|..|.+.|++|+++|+..
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.00  E-value=0.005  Score=54.59  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            4799999999999999999999999999998754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.99  E-value=0.0066  Score=54.11  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|+|||+|..|...|..|++.|++|+++++..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            579999999999999999999999999999853

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.97  E-value=0.0076  Score=53.61  Aligned_cols=34  Identities=24%  Similarity=0.493  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..+|+|||+|..|..+|..|++.|+ +|+++|...
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            4579999999999999999999998 999999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.92  E-value=0.0097  Score=52.62  Aligned_cols=36  Identities=33%  Similarity=0.516  Sum_probs=32.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ....+|.|||.|..|...|..|++.|++|+++++.+
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            345689999999999999999999999999998764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.92  E-value=0.0086  Score=52.86  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|..+|..|++.|++|+++|+.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999853

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.85  E-value=0.0062  Score=50.89  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|+|||+|..|..+|..|.++|++|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            49999999999999999999999999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.84  E-value=0.0071  Score=53.66  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|+|||+|..|.+.|..|++.|++|++++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            569999999999999999999999999999853

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.80  E-value=0.0088  Score=48.37  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~   40 (413)
                      ...|+|||+|..|..+|..|.+. |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            35799999999999999999999 99999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.73  E-value=0.03  Score=52.50  Aligned_cols=36  Identities=39%  Similarity=0.431  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP  202 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch
Confidence            357999999999999999999999999999987543

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.70  E-value=0.0072  Score=53.19  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|.|||.|..|...|..|++.|++|+++|+.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.68  E-value=0.01  Score=53.65  Aligned_cols=34  Identities=32%  Similarity=0.485  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++|.|||+|..|.++|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4689999999999999999999999999999853

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.66  E-value=0.01  Score=55.70  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            357999999999999999999999999999987653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.64  E-value=0.013  Score=52.65  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ++|+|||+|..|...|..|++.|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            57999999999999999999999999999874

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.64  E-value=0.011  Score=53.67  Aligned_cols=33  Identities=30%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .++|+|||+|..|...|..|++.|++|+++++.
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            357999999999999999999999999999875

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.63  E-value=0.0089  Score=52.52  Aligned_cols=33  Identities=27%  Similarity=0.563  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|+|||+|..|...|..|++.|.+|+++++..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            569999999999999999999999999999863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.58  E-value=0.014  Score=51.84  Aligned_cols=34  Identities=18%  Similarity=0.486  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..+|+|||+|..|..+|..|+..|+ +|+|+|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            3579999999999999999999998 999999753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.58  E-value=0.0097  Score=52.67  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+++..
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            3579999999999999999999999999999754

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.56  E-value=0.01  Score=55.42  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|.|||.|..|+.+|..|+++|++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            579999999999999999999999999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.56  E-value=0.012  Score=52.33  Aligned_cols=34  Identities=32%  Similarity=0.515  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      .++|+|||+|..|..+|..|++.|+  +|+++|+..
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4679999999999999999999998  999999853

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.54  E-value=0.012  Score=55.49  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++|.|||.|..|+.+|..|++.|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789999999999999999999999999999753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.52  E-value=0.01  Score=54.78  Aligned_cols=34  Identities=21%  Similarity=0.413  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..++|.|||.|..|+.+|..|++ |++|+++|.++
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            34689999999999999999998 99999999864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.52  E-value=0.013  Score=53.71  Aligned_cols=36  Identities=22%  Similarity=0.411  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||+|..|+.+|..|++.|.+|+|+|+.+..
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV  180 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcch
Confidence            467999999999999999999999999999987653

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.51  E-value=0.016  Score=51.17  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      +..+|.|||+|..|.++|+.|++.|+ +|+|+|..
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34679999999999999999999999 99999986

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.49  E-value=0.015  Score=52.02  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=32.3

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |+.......|.|||.|..|.+.|..|.+.|++|+++|+.+
T Consensus         2 m~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            2 MTTKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             ----CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCccCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4433445679999999999999999999999999999864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.47  E-value=0.013  Score=55.02  Aligned_cols=34  Identities=32%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||.|.+|+++|..|.++|++|++.|...
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4679999999999999999999999999999854

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.44  E-value=0.016  Score=48.00  Aligned_cols=35  Identities=17%  Similarity=0.344  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .++|.|||+|..|.+.|..|++.|++|+++++.+.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46799999999999999999999999999998643

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.42  E-value=0.014  Score=51.76  Aligned_cols=32  Identities=31%  Similarity=0.614  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ++|.|||+|..|...|..|++.|++|+++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            46999999999999999999999999999875

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.36  E-value=0.016  Score=50.70  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||+|..|...|..|++.|++|+++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            49999999999999999999999999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.34  E-value=0.0059  Score=57.28  Aligned_cols=35  Identities=20%  Similarity=0.432  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +.++|+|+|+|-.|..+|..|.+.|++|+|||+++
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            34679999999999999999999999999999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.34  E-value=0.014  Score=50.97  Aligned_cols=34  Identities=29%  Similarity=0.554  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ....|.|||+|..|...|..|+ +|++|+++|+.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            3578999999999999999999 999999999864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.29  E-value=0.056  Score=50.97  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV  213 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence            357999999999999999999999999999987653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.26  E-value=0.013  Score=54.91  Aligned_cols=35  Identities=26%  Similarity=0.199  Sum_probs=32.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~-g~-~V~lvE~~~~   41 (413)
                      .++|.|||+|..|+.+|..|+++ |+ +|+++|.+..
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            46799999999999999999999 99 9999998765

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.24  E-value=0.019  Score=53.40  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..|.|||+|..|..+|..|++.|++|+++|..+.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999998643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.22  E-value=0.02  Score=47.59  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ....|+|||||-+|...|..|.+.|.+|+|++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            3468999999999999999999999999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.19  E-value=0.056  Score=51.04  Aligned_cols=36  Identities=31%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  220 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETV  220 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence            357999999999999999999999999999987653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.18  E-value=0.019  Score=54.04  Aligned_cols=35  Identities=29%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||||.+|+-+|..|++.|.+|+|+|+.+..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL  201 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            57999999999999999999999999999987543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.18  E-value=0.019  Score=54.09  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|.|||+|..|..+|..|+++|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.16  E-value=0.022  Score=50.78  Aligned_cols=34  Identities=21%  Similarity=0.476  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..+|+|||+|..|..+|..|++.|+ +|+|+|.+.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            3579999999999999999999999 999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.14  E-value=0.019  Score=50.74  Aligned_cols=32  Identities=19%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|+|||+|..|...|..|+ .|.+|+++++..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            57999999999999999999 999999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.11  E-value=0.025  Score=50.07  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++|.|||.|..|...|..|++.|++|+++|+.+
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4679999999999999999999999999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.11  E-value=0.021  Score=53.09  Aligned_cols=35  Identities=11%  Similarity=0.293  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +.++.|||.|..|+.+|..|+++|++|+++|+++.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999999999999999999999999998754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.10  E-value=0.058  Score=51.26  Aligned_cols=36  Identities=11%  Similarity=0.248  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI  211 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            357999999999999999999999999999987653

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.08  E-value=0.028  Score=53.85  Aligned_cols=35  Identities=17%  Similarity=0.072  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||||+.|+-.|..+++.|.+|+|+++...
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            46799999999999999999999999999987543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.04  E-value=0.02  Score=51.70  Aligned_cols=35  Identities=20%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..++|.|||.|..|...|..|++.|++|+++++.+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34689999999999999999999999999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.99  E-value=0.014  Score=50.30  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ....|+|||||-.|...|..|.+.|.+|+||+...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            34679999999999999999999999999998753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.94  E-value=0.027  Score=49.99  Aligned_cols=34  Identities=29%  Similarity=0.511  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      ...+|+|||+|..|.++|+.|+..|+  +|+++|..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            34679999999999999999999987  89999975

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.93  E-value=0.023  Score=52.42  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=31.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +...|+|||.|+.|+.+|..|+++|++|+.+|-+.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            34689999999999999999999999999999764

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.91  E-value=0.025  Score=50.65  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ++++|.|||+|..|...|..|++.|++|+++++.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3578999999999999999999999999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.88  E-value=0.026  Score=49.74  Aligned_cols=32  Identities=41%  Similarity=0.688  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|+|||+|..|.++|+.|+..|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            59999999999999999999998  999999764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.88  E-value=0.018  Score=51.03  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc-----C-CcEEEEcc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR-----G-QKTLLLEQ   38 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~-----g-~~V~lvE~   38 (413)
                      ++|.|||+|..|...|..|++.     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            5799999999999999999999     9 99999987

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=94.87  E-value=0.025  Score=53.65  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            357999999999999999999999999999987654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=94.84  E-value=0.02  Score=54.11  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=32.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  221 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI  221 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCch
Confidence            468999999999999999999999999999987654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.83  E-value=0.025  Score=53.08  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999764

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.81  E-value=0.026  Score=48.04  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|.|||+|..|..+|..|++.|++|+++++.+
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4689999999999999999999999999998764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.80  E-value=0.025  Score=52.78  Aligned_cols=35  Identities=31%  Similarity=0.412  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            47999999999999999999999999999987654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.76  E-value=0.088  Score=49.86  Aligned_cols=36  Identities=31%  Similarity=0.482  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI  233 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence            357999999999999999999999999999987654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.75  E-value=0.031  Score=48.86  Aligned_cols=34  Identities=29%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ++|.|||.|..|...|..|++.|++|+++++.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4599999999999999999999999999998643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.72  E-value=0.036  Score=49.11  Aligned_cols=35  Identities=29%  Similarity=0.596  Sum_probs=30.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +..+|+|||+|..|.++|+.|+..|.  +|.++|...
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            34689999999999999999998875  899999753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=94.69  E-value=0.032  Score=51.56  Aligned_cols=36  Identities=31%  Similarity=0.442  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            457999999999999999999999999999987543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.65  E-value=0.044  Score=48.58  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|.|||+|..|...|..|++.|++|+++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3679999999999999999999999999998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=94.65  E-value=0.033  Score=49.34  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=30.3

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      |++| +..+|+|||+|..|.++|+.|+.+|.  +|.|+|..
T Consensus         1 m~~m-~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            1 MNKF-KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             ---C-CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCC-CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            5433 34689999999999999999999885  89999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=94.63  E-value=0.031  Score=48.20  Aligned_cols=33  Identities=18%  Similarity=0.419  Sum_probs=29.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~~   39 (413)
                      .+.|.|||+|..|...|..|++.|++ |.++++.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~   43 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT   43 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            46799999999999999999999998 8899874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.63  E-value=0.036  Score=48.95  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      .+|+|||+|..|..+|+.|+..|+ +|+|+|...
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            469999999999999999999997 999999753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.61  E-value=0.027  Score=52.94  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~   40 (413)
                      ++|.|||.|..|+.+|..|++.  |++|+++|+..
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5799999999999999999999  89999999764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.61  E-value=0.032  Score=49.53  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=29.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..+|+|||+|..|...|..|++.|++|+++ +.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            467999999999999999999999999999 54

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.59  E-value=0.022  Score=53.16  Aligned_cols=36  Identities=19%  Similarity=0.306  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ...|+|||.|.+|+++|..|+++|++|++.|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            356999999999999999999999999999986543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.59  E-value=0.026  Score=52.60  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||+|..|+.+|..|++.|++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            49999999999999999999999999999753

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.52  E-value=0.027  Score=49.51  Aligned_cols=34  Identities=24%  Similarity=0.455  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++|.|||+|..|...|..|++.|++|+++++.+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3579999999999999999999999999998753

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.52  E-value=0.023  Score=47.43  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEE-EcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLL-LEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~l-vE~~~   40 (413)
                      ++|.|||+|..|...|..|++.|++|++ ++++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            5799999999999999999999999999 77653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=94.51  E-value=0.091  Score=49.56  Aligned_cols=36  Identities=31%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV  222 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcc
Confidence            357999999999999999999999999999987543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.50  E-value=0.042  Score=48.67  Aligned_cols=34  Identities=15%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..+|.|||+|..|.++|+.|+..|+ +|+|+|...
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4579999999999999999999998 999999764

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.50  E-value=0.013  Score=49.04  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .++|.|||.|..|.+.|..|+++|++|+++++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            467999999999999999999999999999874

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.48  E-value=0.11  Score=49.23  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc---CCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR---GQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~---g~~V~lvE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.   |.+|+|+++.+..
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            5799999999999999999999   9999999987653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.46  E-value=0.04  Score=49.01  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcC----CcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRG----QKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g----~~V~lvE~~~   40 (413)
                      .++|.|||+|..|...|..|.+.|    ++|+++++..
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            457999999999999999999999    7999998754

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.43  E-value=0.04  Score=48.68  Aligned_cols=32  Identities=31%  Similarity=0.716  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~   40 (413)
                      +|+|||+|..|..+|..|++.  |.+|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            499999999999999999985  78999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.41  E-value=0.097  Score=50.55  Aligned_cols=35  Identities=37%  Similarity=0.412  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.|.+|+++++.+..
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            47999999999999999999999999999987643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.40  E-value=0.046  Score=45.38  Aligned_cols=34  Identities=24%  Similarity=0.224  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+.|.|||+|..|...|..|++.|++|+++++..
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999998753

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.39  E-value=0.035  Score=49.66  Aligned_cols=30  Identities=30%  Similarity=0.477  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      +|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            499999999999999999999999999998

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.36  E-value=0.039  Score=48.95  Aligned_cols=34  Identities=18%  Similarity=0.088  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~   40 (413)
                      .++|.|||.|..|..+|..|++.| ++|+++++..
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            357999999999999999999999 9999999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.36  E-value=0.038  Score=50.89  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +..|+|||.|-.|..+|..|.+.|++|++||+++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3569999999999999999999999999999875

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.33  E-value=0.047  Score=48.33  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      ..|.|||.|..|.+.|..|++.|+  +|+++|+.+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            579999999999999999999999  999999864

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.31  E-value=0.036  Score=49.28  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++|.|||.|..|...|..|++.|++|+++++.+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            3579999999999999999999999999999864

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.29  E-value=0.043  Score=51.67  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  209 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRC  209 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcc
Confidence            357999999999999999999999999999987653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.28  E-value=0.042  Score=51.70  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+++++.+..
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            357999999999999999999999999999987543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.27  E-value=0.038  Score=48.26  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||.|..|...|..|++.|++|+++++.+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            59999999999999999999999999999864

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.27  E-value=0.043  Score=48.90  Aligned_cols=33  Identities=12%  Similarity=-0.050  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHH-HHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSS-AAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~-~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||.|-+|++ +|..|.++|++|++.|+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            56999999999997 8999999999999999864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.23  E-value=0.055  Score=47.90  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ..+|.|||+|..|.++|+.|+..|+ +|.|+|...
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            3579999999999999999999988 999999764

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.23  E-value=0.051  Score=49.45  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+.+
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4679999999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.16  E-value=0.045  Score=46.59  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            3579999999999999999999997 8999998754

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=94.16  E-value=0.043  Score=48.71  Aligned_cols=32  Identities=31%  Similarity=0.524  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|+|||+|..|.++|..|++.|+  +|+++|...
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            49999999999999999999999  999999753

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.16  E-value=0.046  Score=49.19  Aligned_cols=35  Identities=26%  Similarity=0.515  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      .+.+|+|+|||.+|+.+|..|...|. +|+++|+..
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            45789999999999999999999998 999999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.15  E-value=0.04  Score=51.98  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~   40 (413)
                      .++|.|||.|..|+.+|..|+++  |++|+++|++.
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            35799999999999999999998  78999999753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.14  E-value=0.1  Score=49.46  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc---CCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR---GQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~---g~~V~lvE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.   |.+|+|+|+.+..
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence            35799999999999999999999   9999999987643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.14  E-value=0.041  Score=48.66  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      .++|.|||.|..|...|..|++.|+ +|+++++.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4679999999999999999999999 99999985

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.12  E-value=0.049  Score=49.09  Aligned_cols=34  Identities=24%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+.+
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.05  E-value=0.042  Score=51.67  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            35799999999999999999999999999997643

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=94.02  E-value=0.058  Score=46.29  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC----CcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG----QKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g----~~V~lvE~~~~   41 (413)
                      ++|.|||+|..|...|..|++.|    ++|+++++...
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            46999999999999999999999    79999998643

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.97  E-value=0.037  Score=50.90  Aligned_cols=31  Identities=19%  Similarity=0.368  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||.|..|+.+|..|++ |++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            49999999999999999999 99999999764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.96  E-value=0.16  Score=47.82  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF  215 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            357999999999999999999999999999987643

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.95  E-value=0.064  Score=50.30  Aligned_cols=34  Identities=15%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++|.|||.|..|..+|..|+++|++|+++++.+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3679999999999999999999999999999875

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=93.95  E-value=0.045  Score=47.77  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|+|||+|..|.++|+.|++.|+  +|+|+|..+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            49999999999999999999988  899999754

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.94  E-value=0.054  Score=47.57  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      ..+|.|||+|..|..+|+.|+.+|+  +|+|+|...
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            3679999999999999999999998  999999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.92  E-value=0.069  Score=46.55  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +.|.|||+ |..|...|..|++.|++|+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~   44 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIA   44 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            47999999 999999999999999999999875

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.92  E-value=0.065  Score=50.62  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +...|.|||.|..|..+|..|+++|++|+++++.+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35789999999999999999999999999999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.91  E-value=0.031  Score=50.71  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +|.|||+|..|...|..|++.|++|+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            7999999999999999999999999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=93.91  E-value=0.17  Score=48.26  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.|.+|+++|+.+..
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            67999999999999999999999999999987643

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.91  E-value=0.055  Score=48.65  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      .+.+|+|+|+|.+|..+|..|...|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45789999999999999999999998 89999986

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.90  E-value=0.054  Score=51.01  Aligned_cols=35  Identities=23%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+.+|.|||.|..|...|..|+++|++|+++++.+
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            45789999999999999999999999999999763

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=93.90  E-value=0.057  Score=49.94  Aligned_cols=36  Identities=33%  Similarity=0.465  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV  187 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch
Confidence            457999999999999999999999999999987654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=93.89  E-value=0.059  Score=49.61  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            57999999999999999999999999999987654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.88  E-value=0.062  Score=47.51  Aligned_cols=35  Identities=20%  Similarity=0.529  Sum_probs=31.8

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ...|+|.|| |..|..++..|.++|++|+++++...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            467999999 99999999999999999999988654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=93.85  E-value=0.079  Score=46.00  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC---cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ---KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~---~V~lvE~~~   40 (413)
                      +.|.|||+|..|.+.|..|.+.|+   +|+++|+++
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            569999999999999999999998   999999864

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.85  E-value=0.17  Score=48.06  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV  217 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            357999999999999999999999999999987653

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.83  E-value=0.055  Score=44.72  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=28.8

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            9 DVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +|+||| +|..|..+|..|++.|++|+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            489999 9999999999999999999999874

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.82  E-value=0.073  Score=46.28  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +.|+|+|+|..|..++..|.++|++|+++.+...
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999988643

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.75  E-value=0.061  Score=47.62  Aligned_cols=35  Identities=29%  Similarity=0.567  Sum_probs=30.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      .++.+|+|||+|..|.++|+.|+..+.  ++.|+|..
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            345789999999999999999999876  89999974

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.71  E-value=0.072  Score=45.28  Aligned_cols=32  Identities=13%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC----cEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ----KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~----~V~lvE~~   39 (413)
                      ++|.|||+|..|...|..|.+.|+    +|++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            469999999999999999999998    99999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.71  E-value=0.052  Score=50.78  Aligned_cols=34  Identities=15%  Similarity=0.055  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCc-EEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~-V~lvE~~~   40 (413)
                      ..+|+|||+|.+|+-+|..|++.|.+ |+|+++.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            35799999999999999999999998 99999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.69  E-value=0.054  Score=47.54  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|.|||+|..|...|..|++.|++|+++++..
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999998753

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.69  E-value=0.059  Score=47.61  Aligned_cols=32  Identities=19%  Similarity=0.452  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~   40 (413)
                      +|+|||+|..|..+|..|+++|  .+|+++|+..
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            5999999999999999999999  6999999753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.68  E-value=0.028  Score=47.45  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=30.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+..++|+|+|-.|..+|..|.+.|+ |+++|+++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            34679999999999999999999999 999998753

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.68  E-value=0.067  Score=47.33  Aligned_cols=34  Identities=18%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +..|+|+|| |..|..++..|.++|++|.++.+..
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   45 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN   45 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCC
Confidence            347999997 9999999999999999999998864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.62  E-value=0.07  Score=46.29  Aligned_cols=31  Identities=32%  Similarity=0.492  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .|.|||+|..|...|..|.+.|++|+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4999999999999999999999999999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.60  E-value=0.057  Score=49.20  Aligned_cols=34  Identities=12%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g-------~~V~lvE~~~~   41 (413)
                      ++|.|||+|..|...|..|++.|       ++|+++++...
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            46999999999999999999999       99999998643

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.60  E-value=0.058  Score=46.87  Aligned_cols=33  Identities=15%  Similarity=0.155  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +.|+|+|+|..|..++..|.++|++|+++.+..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            579999999999999999999999999998754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.58  E-value=0.066  Score=45.96  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEccc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~   39 (413)
                      .|.|||+|..|...|..|++.| ++|+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            4999999999999999999999 999999875

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.57  E-value=0.042  Score=49.56  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g-------~~V~lvE~~~~   41 (413)
                      ++|.|||+|..|...|..|++.|       ++|+++++...
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            57999999999999999999999       89999998643

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.56  E-value=0.079  Score=46.50  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.||| .|..|.+.|..|++.|++|+++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            4799999 99999999999999999999998753

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.53  E-value=0.059  Score=44.99  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +.|+|+|| |..|..++..|.++|++|+++.+...
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            46999996 99999999999999999999998643

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=93.49  E-value=0.07  Score=52.97  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.49  E-value=0.026  Score=43.54  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=29.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...|+|||+|..|..+|..|.+.|.+|+++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            357999999999999999999999999999875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.48  E-value=0.072  Score=46.94  Aligned_cols=32  Identities=28%  Similarity=0.497  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|.|||+|..|.++|+.|++.|.  +|+|+|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            49999999999999999999987  899999754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.41  E-value=0.24  Score=46.68  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            57999999999999999999999999999874

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.40  E-value=0.085  Score=49.77  Aligned_cols=33  Identities=15%  Similarity=0.323  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|.|||.|..|...|..|+++|++|+++++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999763

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.33  E-value=0.077  Score=46.44  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||.|..|...|..|++.|++|+++++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            49999999999999999999999999998753

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.24  E-value=0.059  Score=49.75  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+..|||.|..|+.+|..|+++|++|+++|.++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            578999999999999999999999999999875

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.22  E-value=0.065  Score=46.96  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+|.+||-|..|...|..|.++|++|+++|+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.20  E-value=0.078  Score=46.06  Aligned_cols=35  Identities=37%  Similarity=0.502  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            4789999999999999999999997 8999998754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.16  E-value=0.091  Score=49.46  Aligned_cols=33  Identities=36%  Similarity=0.588  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|.|||+|..|...|..|+++|++|+++++..
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            369999999999999999999999999999753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.14  E-value=0.098  Score=43.30  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=29.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|+|+|| |..|..++..|.++|++|+++.+..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            3999996 9999999999999999999998853

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.12  E-value=0.05  Score=50.11  Aligned_cols=30  Identities=23%  Similarity=0.231  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHH-cCCcEEEEc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAK-RGQKTLLLE   37 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~-~g~~V~lvE   37 (413)
                      ++|+|||+|..|...|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            469999999999999999998 499999998

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.11  E-value=0.099  Score=46.28  Aligned_cols=34  Identities=35%  Similarity=0.613  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      ...+|+|||+|..|.++|+.|+..|.  ++.|+|..
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            34689999999999999999999987  89999974

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.08  E-value=0.1  Score=46.14  Aligned_cols=34  Identities=18%  Similarity=0.324  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      ..+|.|||+|..|.++|+.|+.+|+  +|+|+|...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            4689999999999999999999997  899999643

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=93.05  E-value=0.11  Score=46.07  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~   42 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+...
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve   70 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVS   70 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEec
Confidence            4689999999999999999999997 89999987543

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=93.00  E-value=0.24  Score=46.40  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~  204 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE  204 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            45799999999999999999999999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=92.98  E-value=0.095  Score=50.91  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  222 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV  222 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            57999999999999999999999999999987643

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=92.94  E-value=0.069  Score=52.97  Aligned_cols=33  Identities=39%  Similarity=0.598  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|..+|..|+++|++|+++|+.+
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.93  E-value=0.12  Score=44.33  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...++|||+|-+|.++|+.|++.|.+|+|+.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999998864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.92  E-value=0.12  Score=44.71  Aligned_cols=33  Identities=12%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...++|+|+|-+|..+|..|++.|.+|+++++.
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            357999999999999999999999999999875

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=92.92  E-value=0.14  Score=43.14  Aligned_cols=39  Identities=23%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CCCCCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015072            1 MEFSGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 M~~~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      |.+......++|.|| |-.|..+|..|+++|++|+++++.
T Consensus         1 M~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 3d3w_A            1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CccccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            443334456899988 799999999999999999999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=92.90  E-value=0.11  Score=43.26  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|+|+|| |..|..++..|.++|++|+++.+..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            3999998 9999999999999999999998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=92.88  E-value=0.12  Score=48.62  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +.+|.|||.|..|...|..|+++|++|+++++..
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            3679999999999999999999999999999753

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.87  E-value=0.1  Score=47.16  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .|+|||||..|..+|+.+.+.|++|+++|.++.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            599999999999999999999999999997654

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=92.87  E-value=0.1  Score=45.60  Aligned_cols=32  Identities=28%  Similarity=0.498  Sum_probs=29.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|+|.|| |..|..++.+|.++|++|+++.|.+
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4999998 9999999999999999999997753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=92.83  E-value=0.11  Score=43.58  Aligned_cols=34  Identities=24%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+.|+|.|| |..|..++..|.++|++|+++.+..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            467999998 9999999999999999999998864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.81  E-value=0.13  Score=45.95  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=29.5

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      ..+|+|||+ |..|.++|+.|+.+|.  +|+|+|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            467999998 9999999999999985  89999975

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=92.79  E-value=0.13  Score=41.87  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +.|+|+|| |..|..++..|.++|++|+++.+...
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            46999998 99999999999999999999988643

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.79  E-value=0.13  Score=45.62  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      ...+|.|||+|..|.++|+.|+.+|.  +++|+|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            34689999999999999999999987  89999965

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=92.72  E-value=0.08  Score=47.15  Aligned_cols=33  Identities=33%  Similarity=0.356  Sum_probs=29.3

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCC-------cEEEEccc
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQ-------KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~-------~V~lvE~~   39 (413)
                      .++|+|+|| |..|..++..|.++|+       +|.++|..
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            357999998 9999999999999886       89999874

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.71  E-value=0.12  Score=44.91  Aligned_cols=32  Identities=34%  Similarity=0.480  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      .|.|||+|..|.+.|..|++.|+  +|+++|+..
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            59999999999999999999998  899998753

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=92.68  E-value=0.1  Score=44.80  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      .|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            499999999999999999999999999765

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=92.64  E-value=0.15  Score=43.01  Aligned_cols=39  Identities=21%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             CCCCCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015072            1 MEFSGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 M~~~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      |....+...++|.|| |-.|..+|..|+++|++|+++++.
T Consensus         1 m~~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            1 MKLNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             --CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CccCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            433334456899988 899999999999999999999875

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.59  E-value=0.11  Score=47.58  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.53  E-value=0.11  Score=48.78  Aligned_cols=36  Identities=31%  Similarity=0.443  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++. |.+|+++++.+..
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            35799999999999999999999 9999999987543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.49  E-value=0.1  Score=44.72  Aligned_cols=32  Identities=16%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ++|.|||.|..|...|..|.+.|++|.++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence            46999999999999999999999999999875

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=92.44  E-value=0.12  Score=44.06  Aligned_cols=35  Identities=31%  Similarity=0.493  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            4679999999999999999999997 8999998754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.39  E-value=0.16  Score=45.16  Aligned_cols=34  Identities=32%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             CCccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +...|+|.|| |..|..++..|.++|++|+++.+.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467999998 999999999999999999999875

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.37  E-value=0.11  Score=45.27  Aligned_cols=31  Identities=32%  Similarity=0.367  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|.|||+|..|...|..|++ |++|+++++..
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            59999999999999999999 99999998753

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=92.35  E-value=0.092  Score=52.03  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|.+|..+|..++..|++|+|+|..+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            579999999999999999999999999999764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.34  E-value=0.16  Score=45.45  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..|.|||.|..|.+.|..|++.|++|+++++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~   48 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECC
Confidence            46999999999999999999999999999875

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=92.34  E-value=0.12  Score=44.98  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|.|||+|-.|.++|+.|..++.  ++.|+|...
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            49999999999999999998875  799999653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.33  E-value=0.083  Score=46.19  Aligned_cols=32  Identities=31%  Similarity=0.521  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +.|.|||+|..|...|..|++.|++|++++ ..
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            469999999999999999999999999998 53

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.20  E-value=0.12  Score=48.35  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...|+|||+|-+|...+..|.+.|.+|+|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            467999999999999999999999999999975

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=92.16  E-value=0.14  Score=47.12  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEc
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE   37 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE   37 (413)
                      |++...|+|+|+|..|..++..+.+.|++|.++|
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4445789999999999999999999999999999

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.13  E-value=0.19  Score=43.07  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             CCCCCCCccEEEECC-CH--HHHHHHHHHHHcCCcEEEEcccC
Q 015072            1 MEFSGENFDVIVVGA-GI--MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 M~~~~~~~dvvIIGg-G~--aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |.+......++|.|| |.  .|..+|..|+++|.+|+++++..
T Consensus         1 M~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            543334456889997 45  89999999999999999997753

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=92.10  E-value=0.11  Score=46.36  Aligned_cols=33  Identities=30%  Similarity=0.306  Sum_probs=29.5

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCC-------cEEEEccc
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQ-------KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~-------~V~lvE~~   39 (413)
                      .++|+|||| |..|.++++.|...|.       +|.++|..
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            468999998 9999999999999885       79999875

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.07  E-value=0.16  Score=45.06  Aligned_cols=35  Identities=34%  Similarity=0.585  Sum_probs=30.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      .++.+|+|||+|..|.++|+.|+..++  ++.|+|..
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            345789999999999999999998876  89999974

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.07  E-value=0.14  Score=46.29  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|+|+|+|.+|..++..|+..|.+|+++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.06  E-value=0.15  Score=48.09  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            357999999999999999999999999999987643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.06  E-value=0.17  Score=46.16  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||+|.+|+.+|..|...|.+|+++|+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4579999999999999999999999999999764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.92  E-value=0.12  Score=44.58  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...++|+|+|-+|..+|+.|++.|.+|+|+++..
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999998763

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=91.92  E-value=0.17  Score=44.58  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      +|.|||+|..|.++|+.|+..++ +|.|+|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999999888 699999753

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.92  E-value=0.16  Score=44.42  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ...++|||+|-+|..+|..|++.|. +|+|+++..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999997 999998763

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=91.89  E-value=0.2  Score=44.69  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             CCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +.+.|+|.|| |..|..++..|+++|++|+++++..
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~   39 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLV   39 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3467999985 9999999999999999999998754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=91.87  E-value=0.21  Score=42.79  Aligned_cols=40  Identities=25%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             CCCCCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            1 MEFSGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 M~~~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |..|.....++|.|| |-.|..+|..|+++|++|+++++..
T Consensus         1 M~~m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (267)
T 2gdz_A            1 MAHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   41 (267)
T ss_dssp             -CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCH
Confidence            554444456888886 6789999999999999999998753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.87  E-value=0.17  Score=45.86  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|+|+|..|..+|..|+..|.+|+++|+..
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999998753

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.84  E-value=0.16  Score=43.94  Aligned_cols=33  Identities=30%  Similarity=0.508  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..++|||+|-+|..+|..|.+.|.+|+++++..
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            579999999999999999999999999998763

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=91.81  E-value=0.13  Score=45.51  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=28.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcC--CcEEEEcccC
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g--~~V~lvE~~~   40 (413)
                      +|+|||+ |..|.++|+.|++.|  .+|.++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            5999998 999999999999988  6899999764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=91.80  E-value=0.16  Score=44.30  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~   39 (413)
                      +.|.|||+|..|...|..|++.  |.+|+++|+.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            5699999999999999999998  5799999875

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=91.73  E-value=0.44  Score=45.16  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--------------CCcEEEEcccCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKR--------------GQKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~--------------g~~V~lvE~~~~~   42 (413)
                      .++|||||++|+-+|..|++.              ..+|+|||+.+..
T Consensus       219 ~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          219 SIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             ceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            599999999999999988753              3689999998654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=91.63  E-value=0.24  Score=45.03  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ....|+|||+|-.|..++..+.+.|++|+++|..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            456799999999999999999999999999987543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=91.43  E-value=0.25  Score=44.53  Aligned_cols=34  Identities=26%  Similarity=0.649  Sum_probs=30.0

Q ss_pred             CccEEEECC-CHHHHHHHHHHHH--cCCcEEEEcccC
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAK--RGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~--~g~~V~lvE~~~   40 (413)
                      ...|+|.|| |..|..++..|.+  .|++|+++++..
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~   46 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFR   46 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCC
Confidence            467999976 9999999999999  899999998754

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=91.34  E-value=0.27  Score=45.37  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=31.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ....|+|||+|..|..++..+.+.|++|.++|..+
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            34679999999999999999999999999998653

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.33  E-value=0.23  Score=42.25  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      .++|||+|-+|.++++.|.+.|. +|+|+++..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999998 999998864

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=91.32  E-value=0.19  Score=45.21  Aligned_cols=35  Identities=26%  Similarity=0.502  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            4679999999999999999999997 8999998654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.27  E-value=0.18  Score=43.53  Aligned_cols=35  Identities=17%  Similarity=0.139  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ...++|||+|-+|..+|+.|++.|. +|+|+.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            3579999999999999999999998 8999988753

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=91.25  E-value=0.14  Score=45.46  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             CCccEEEEC-CCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015072            6 ENFDVIVVG-AGIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIG-gG~aG~~~A~~L~~~g--~~V~lvE~~~   40 (413)
                      +.++|+||| +|..|.++++.|+++|  .+|.++|...
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~   44 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVN   44 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            346899999 7999999999999988  6899998643

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=90.58  E-value=0.038  Score=45.32  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+.|.|||+|..|...|..|.+.|++|+++++..
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   52 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNP   52 (201)
Confidence            3569999999999999999999999999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.18  E-value=0.22  Score=45.22  Aligned_cols=33  Identities=33%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...|+|||+|.+|..+|..|+..|.+|+++|+.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            457999999999999999999999999999875

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=91.13  E-value=0.23  Score=47.52  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~   42 (413)
                      ...|+|||+|-.|+.+|..|++.|. +++|+|.+...
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve  362 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVS  362 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCc
Confidence            4689999999999999999999997 89999987543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.11  E-value=0.23  Score=44.44  Aligned_cols=36  Identities=17%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             CCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +...|+|.|| |..|..++..|.++|++|+++++...
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            3467999998 99999999999999999999988643

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.11  E-value=0.3  Score=40.45  Aligned_cols=32  Identities=16%  Similarity=0.166  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHH-HcCCcEEEEcccC
Q 015072            9 DVIVVGA-GIMGSSAAYQLA-KRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~-~~g~~V~lvE~~~   40 (413)
                      .|+|+|| |..|..+|..|+ +.|++|+++.+..
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            3999995 999999999999 8999999998763

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=91.10  E-value=0.23  Score=41.86  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=30.0

Q ss_pred             CCCCCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            1 MEFSGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         1 M~~~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      |..+.+...++|.|| |-.|..+|..|+++|++|+++++...
T Consensus         1 M~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            1 MAASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             -----CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCccCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            443444456888886 57799999999999999999988653

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=90.97  E-value=0.2  Score=44.01  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             CccEEEECCC-HHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAG-IMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG-~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...++|||+| +.|..+|..|...|..|+++++.
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            4689999999 67999999999999999999875

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=90.89  E-value=0.25  Score=43.28  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|+|+|| |..|..++..|.++|++|.++.+..
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            45999998 9999999999999999999998864

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=90.88  E-value=0.31  Score=44.47  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|||+|..|..+|..+.+.|++|+++|..+
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            4579999999999999999999999999998754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=90.87  E-value=0.16  Score=50.73  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVG--AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIG--gG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .+|+|||  ||.+|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            5799999  99999999999999999999999875

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=90.85  E-value=0.34  Score=41.41  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             CCCCCCCccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015072            1 MEFSGENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 M~~~~~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      |.+..+...++|.|| |-.|..+|..|+++|++|+++++.
T Consensus         1 m~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (263)
T 3ai3_A            1 MDMGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQ   40 (263)
T ss_dssp             CCCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            443333455888876 678999999999999999999875

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.84  E-value=0.23  Score=47.94  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..++|||+|-.|..+|..|.+.|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            67999999999999999999999999999988654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.82  E-value=0.27  Score=42.10  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .++|||+|-+|..+|..|.+.|.+|+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            7999999999999999999999999999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.81  E-value=0.26  Score=43.17  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...+.|||+|-+|..+|..|...|.+|+++++..
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4679999999999999999999999999999753

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=90.78  E-value=0.23  Score=47.42  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=31.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~V  362 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  362 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            4689999999999999999999997 8999998754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=90.74  E-value=0.26  Score=43.26  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=29.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|+|+|| |..|..++..|.++|++|.++.+..
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            46999997 9999999999999999999998863

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.63  E-value=0.28  Score=42.81  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|.|||.|-+|..+|..|...|.+|+++++..
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4579999999999999999999999999999753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=90.54  E-value=0.31  Score=42.20  Aligned_cols=33  Identities=33%  Similarity=0.407  Sum_probs=29.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.+.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            4579999999999999999999998 69999875

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=90.41  E-value=0.045  Score=50.92  Aligned_cols=43  Identities=21%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             HHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          163 AIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       163 ~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      +.+.|++++. .+|++|..  +  ++  .|++++|+++.+|++|+|+|+.
T Consensus        66 ~~~~gv~~i~-~~v~~Id~--~--~~--~V~~~~g~~i~YD~LViAtG~~  108 (430)
T 3hyw_A           66 LPKFNIEFIN-EKAESIDP--D--AN--TVTTQSGKKIEYDYLVIATGPK  108 (430)
T ss_dssp             GGGGTEEEEC-SCEEEEET--T--TT--EEEETTCCEEECSEEEECCCCE
T ss_pred             HHHCCcEEEE-eEEEEEEC--C--CC--EEEECCCCEEECCEEEEeCCCC
Confidence            3456899884 58999988  5  23  4677889889999999999974

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=90.40  E-value=0.31  Score=42.90  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            4579999999999999999999998 89999875

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=90.38  E-value=0.33  Score=41.74  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.+..
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4679999999999999999999996 999998753

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=90.37  E-value=0.29  Score=43.73  Aligned_cols=34  Identities=21%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...|+|.|| |..|..++..|.++|++|+++++..
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           27 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            467999998 9999999999999999999998753

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=90.36  E-value=0.31  Score=43.83  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...|+|+|.|-.|..+|..|.+.|.+|++.|..
T Consensus       173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            467999999999999999999999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	9e-21
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-10
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	8e-19
d2gf3a2	104	d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus s	2e-18
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	6e-15
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	3e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	3e-11
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-09
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.003
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-09
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-09
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	5e-09
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-08
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	3e-08
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-08
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-08
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	5e-08
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	1e-07
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-07
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	3e-07
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	4e-07
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	4e-07
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	6e-07
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	1e-06
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	1e-06
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-06
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-06
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	3e-06
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-06
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	4e-06
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	8e-06
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	1e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-05
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	1e-05
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	2e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	3e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-05
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	3e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	3e-05
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	4e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	5e-05
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	6e-05
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	6e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	7e-05
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	7e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	7e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	1e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	1e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	2e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	3e-04
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	3e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	4e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	4e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	5e-04
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	5e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	7e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	8e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.001
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.002

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 89.4 bits (220), Expect = 9e-21
 Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 6/214 (2%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63

Query: 67  MVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
           + L S  LW + + E  +K++ K      GP    +  +      K       L     +
Sbjct: 64  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123

Query: 127 QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDV 186
            K    I +PEN+  +     GV+     +  ++ LA   GA +  +T V+      D  
Sbjct: 124 NKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPD-- 181

Query: 187 RGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI 220
              V + T++G  +   K +V+ GAW  KL+ K+
Sbjct: 182 --SVKIETANG-SYTADKLIVSMGAWNSKLLSKL 212

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 346 EDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARF 391
            +VV+A GFSGHGFK +  VG +L+ L L+G+ +  ++  F I R 
Sbjct: 230 SNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTE-HDISIFSINRP 274

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 84.0 bits (206), Expect = 8e-19
 Identities = 33/209 (15%), Positives = 60/209 (28%), Gaps = 5/209 (2%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKT-LLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
            ++++GAGI+G++ A +L  RG     +L+Q       GS+      +  T P       
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASF 62

Query: 68  VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
              +         +                    +                 L      Q
Sbjct: 63  AKYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQ 122

Query: 128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR 187
           +    ++      G+     G+    +AV +        G   R +T V  + +    V 
Sbjct: 123 ELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVT 182

Query: 188 GGVTVVTSSGEEFWGKKCVVTAGAWVGKL 216
           G  T    +         V  AG W  K+
Sbjct: 183 GVQT----ADGVIPADIVVSCAGFWGAKI 207

>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 104

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 227 IQAVETSVCYWRIKEGDEADYAVGGDFPSF-ASYGDPHVYGTPSLEYPGLIKIALHRGYL 285
           +Q     V ++   E DE+ Y+   DFP F     +   YG PS    GL       G  
Sbjct: 1   LQPYRQVVGFF---ESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQK 57

Query: 286 CDPD--RRPWGPGP-LLDSLKELIQGRFAGRVDSSGPAATQLCMYSMT 330
            DPD   R +G  P    +L+  ++    G  +        +CMY+ T
Sbjct: 58  IDPDTINREFGVYPEDESNLRAFLEEYMPG-ANGE-LKRGAVCMYTKT 103

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 72.5 bits (176), Expect = 6e-15
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 10/217 (4%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
            +++ +V+G GI+GS+ AY LAK  + T L E         ++   +  + A    +   
Sbjct: 3   RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGG--RTTSAAAGMLGAHAECEERD 60

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
                +       +                       L        +      +      
Sbjct: 61  AFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWY 120

Query: 126 LQKYSGRIEIPENW---VGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKV 182
            ++     E   +         +    ++P      +   A   GA + ++T V      
Sbjct: 121 SKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVL----- 175

Query: 183 KDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKK 219
             +  G    + +   + W    VV +G W G   K+
Sbjct: 176 HVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQ 212

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 348 VVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIAR 390
           ++ A G   +G  +AP  G +++DL+++ E     L  FRI R
Sbjct: 233 ILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR 275

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 60.6 bits (146), Expect = 3e-11
 Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 4/165 (2%)

Query: 10  VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVL 69
           V+V+GAG++G S A  + +R    L          R +    +  + A   + Y      
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTD-VAAGLWQPYTSEPSN 61

Query: 70  ESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKY 129
                W Q             +  +MG +          +         VL  R++  + 
Sbjct: 62  PQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRE 121

Query: 130 SGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNT 174
              +++  ++         +++  K +        + G       
Sbjct: 122 ---LDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRK 163

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           ++DVIV+G GI     +  L+  G+K L +++ D     G   GE+ ++  +   + + 
Sbjct: 4  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY---G---GEAASVTLSQLYEKFK 57

Query: 66 PMVLESSLLWEQAQSEIGYKVYFKAHQFDM 95
             +       +   +  + V         
Sbjct: 58 QNPISKEERESKFGKDRDWNVDLIPKFLMA 87

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAG 210
           F  L+   G     +T +  VL  KD  +     V +    F     +    
Sbjct: 242 FARLSAIYGGTYMLDTPIDEVLYKKDTGK--FEGVKTKLGTFKAPLVIADPT 291

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 15/99 (15%), Positives = 33/99 (33%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E +DVIV+G G+     +  ++  G+K L +++  +     SS      +   +      
Sbjct: 5   EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGP 64

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLR 104
           P  +     W             +  +  +     + L 
Sbjct: 65  PETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLD 103

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 55.0 bits (131), Expect = 3e-09
 Identities = 35/205 (17%), Positives = 61/205 (29%), Gaps = 41/205 (20%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           +DVIV+G G  G  AA   A+ G   LLL++ + L  + +  G  R              
Sbjct: 3   YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCN------------ 50

Query: 68  VLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQ 127
                 +  +   +   K      +F        +   +I       V  +  D  ++  
Sbjct: 51  ------VTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFP 104

Query: 128 KYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR 187
             +    +                    V    T     G  +R NT V+T+       +
Sbjct: 105 VSNKAQSV--------------------VDALLTRLKDLGVKIRTNTPVETIEYENGQTK 144

Query: 188 GGVTVVTSSGEEFWGKKCVVTAGAW 212
               V+  +GE       V+  G  
Sbjct: 145 A---VILQTGEVLETNHVVIAVGGK 166

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 54.7 bits (130), Expect = 5e-09
 Identities = 26/250 (10%), Positives = 51/250 (20%), Gaps = 27/250 (10%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
               V+V+G+G++G S+A  LA++G    +L +        SS   +          +  
Sbjct: 5   SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP--EDVSSQTFASPWAGANWTPFMT 62

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
                     +    E  +K + +            + R      +              
Sbjct: 63  LTDGP----RQAKWEESTFKKWVELVPTGHAMWLKGTRRFA----QNEDGLLGHWYKDIT 114

Query: 126 LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD 185
                             T     +   K          K GA                 
Sbjct: 115 PNYRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFERR------------ 162

Query: 186 VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGDEA 245
                TV +           V   G     +           +     +     +     
Sbjct: 163 -----TVTSLEQAFDGADLVVNATGLGAKSIAGIDDQARGGPRVEAERIVLPLDRTKSPL 217

Query: 246 DYAVGGDFPS 255
               G    +
Sbjct: 218 SLGRGSARAA 227

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (125), Expect = 3e-08
 Identities = 16/88 (18%), Positives = 31/88 (35%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
          +D I+VG+G+ G+  A +L K  +K L++E+ + +     +          Y    +H  
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTN 61

Query: 68 VLESSLLWEQAQSEIGYKVYFKAHQFDM 95
                          +     A   D 
Sbjct: 62 DKYIWDYVNDLVEFNRFTNSPLAIYKDK 89

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E  DV+++G+G  G +AA      G K +LLE+       G++   +  + A   +    
Sbjct: 22  ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP--GGNTKLAAGGMNAAETKPQAK 79

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDM 95
             + +   +      + G  +        +
Sbjct: 80  LGIEDKKQIMIDDTMKGGRNINDPELVKVL 109

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 52.3 bits (124), Expect = 4e-08
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
          E   V+VVGAG  G +A+    K G   +L+++  F    G+S   +  + A   +    
Sbjct: 18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS--GGNSMISAGGMNAVGTKQQTA 75

Query: 66 PMVLESSLLWEQ 77
            V +    + +
Sbjct: 76 HGVEDKVEWFIE 87

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 51.8 bits (123), Expect = 4e-08
 Identities = 34/235 (14%), Positives = 66/235 (28%), Gaps = 42/235 (17%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           +  + I++GAG  G   A QLAK G+   + +    +  +    G          E    
Sbjct: 3   QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNL-EVTPA 61

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
             + ++    + A +      +             K L  +        +          
Sbjct: 62  HYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQI---------- 111

Query: 126 LQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDD 185
                                         V M ++   K GA +   +EV  V ++++D
Sbjct: 112 ------------------------------VEMLKSECDKYGAKILLRSEVSQVERIQND 141

Query: 186 VRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIK 240
            +    +  +S +       V T G  +  L     G ++  Q     V   R  
Sbjct: 142 EKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQF-GIPVIPPRAV 195

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49
          +  DV+VVG+G  G SAA      G K +L+E+   +   G++ 
Sbjct: 15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI--GGNAK 56

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 51.1 bits (121), Expect = 1e-07
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 5  GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYY 64
          G+    +V+G+G  G+ AA +L + G  T ++E            G S     +  + + 
Sbjct: 5  GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM-----------GRSWDTPGSDGKIFC 53

Query: 65 HPMVLESSLLW 75
            +  +   +W
Sbjct: 54 GMLNPDKRSMW 64

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          M+     FD +V+GAG  G  AA Q+++ GQ   LL +
Sbjct: 1  MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSK 38

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49
          +V VVG GI G + A+ L  RG   +LLE    L     +H
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTH 42

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          DV+VVG GI G +AA  L   G   ++LE  D +
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 34

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
          +  D +V+G G+ G  AA    ++G  T++L        R  S
Sbjct: 4  QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK--RSHS 44

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 47.7 bits (113), Expect = 6e-07
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          + V++VGAG  G+  A+ LA++G +  LL Q
Sbjct: 3  YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQ 33

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 15/87 (17%), Positives = 29/87 (33%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
            +V+G G   + +A +L + G +TL+LE     +  G        +        +    
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNR 63

Query: 69 LESSLLWEQAQSEIGYKVYFKAHQFDM 95
           E+ L        +   +   A   D 
Sbjct: 64 TEAPLGSFLWLDVVNRNIDPYAGVLDR 90

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
          ++  +++VGAG  G+    QLA++G +  +++Q D   H G   G S   R +      H
Sbjct: 1  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD---HIG---GNSYDARDSETNVMVH 54

Query: 66 PM 67
            
Sbjct: 55 VY 56

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
           V++VGAG+ G SAAY LA  G +  +LE  +  
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           +DV++VG+G +G + A +L   G K  + +
Sbjct: 4  KYDVVIVGSGPIGCTYARELVGAGYKVAMFD 34

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 1  MEFSGENFDVIVVGAGIMGSSAAYQLAK------RGQKTLLLEQ 38
          ME   E  DV++VGAG  G SAA +L +      +  +  L+E+
Sbjct: 26 MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEK 69

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 22/145 (15%), Positives = 39/145 (26%), Gaps = 5/145 (3%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHGES-RTIRATYPEDYYH 65
            D+++ GAGI G S A  L + G  K  LLE    +   G         + A        
Sbjct: 2   IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGP 61

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
            +   +    E    +      +   +     +            +   +        Q 
Sbjct: 62  ALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ 121

Query: 126 LQKYSGRIEIPENW---VGVTTELG 147
             +    +E  E     V +    G
Sbjct: 122 AVRTGLGVERIEERDGRVLIGARDG 146

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50
           V ++GAG  G      L K G   ++LE+    +  G    
Sbjct: 4  QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRA 45

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          V V+GAG+ G +AAY+L   G    + E     
Sbjct: 4  VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL-HHRGSSHGESRTIRATYPEDYYH 65
          +FD+I++G G  G +AA + AK  +K ++L+             G +       P+   H
Sbjct: 3  DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMH 62

Query: 66 PMVLESSLLWEQAQSEIGYKVYFKAHQFDM 95
             L    L +        +   K     M
Sbjct: 63 QAALLGQALKDSRNYGWKLEDTVKHDWEKM 92

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKT-LLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           VIVVGAG+ G SAA +L++ G    L+LE  D +  R      +               
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 61

Query: 68 VLESSLLWEQAQSEIGYKVYFKAHQFD 94
            + + +W    S +  + +     + 
Sbjct: 62 GGKMNPIWPIVNSTLKLRNFRSDFDYL 88

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
           VI++G+G+ G +AA QL   G    LLE  D +
Sbjct: 7  KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 40

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
          + FDVIV+GAG  G  AA + A+ G KT L+E++     + +  G    +     +    
Sbjct: 2  QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLD 61

Query: 66 PM 67
            
Sbjct: 62 SS 63

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           +D I+VGAG  G  AA +L++ G+K LLLE
Sbjct: 2  PYDYIIVGAGPGGIIAADRLSEAGKKVLLLE 32

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL 42
            DV+VVGAG  G SAAY+++K    +  ++EQ    
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 69

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
          ++ DV+++G G  G  AA + A+ G  T  +E+      RG   G    +     +   +
Sbjct: 4  KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEK------RGKLGGTCLNVGCIPSKALLN 57

Query: 66 PMVLESSLLWEQAQSEIGYKVYFKAHQFDM 95
             L   +  E  +  I      K +  + 
Sbjct: 58 NSHLFHQMHTEAQKRGIDVNGDIKINVANF 87

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
          +  DV+++G G  G  AA + A+ G KT  +E+   L     + G   +    +    YH
Sbjct: 2  DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 61

Query: 66 PM 67
            
Sbjct: 62 EA 63

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 2  EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKT-LLLE 37
          + SG   D I+ G G+ G + A +L +    + L++E
Sbjct: 12 DVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIE 48

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
            +DV+V+G G  G SAA+  A  G K  ++E++  L
Sbjct: 5  AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           + DV+++G+G  G S A +LA +  + ++L 
Sbjct: 6  HSCDVLIIGSGAAGLSLALRLADQH-QVIVLS 36

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +D+IV+G G  G +AA + A+   K  L+E
Sbjct: 2  YDLIVIGGGSGGMAAARRAARHNAKVALVE 31

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
          E  DV+VVGAG  G  A Y+L + G+   ++E   
Sbjct: 6  EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 40

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          +D I +G G  G   +  L   G + L+++++ FL
Sbjct: 43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL 77

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          ++D I +G G  G ++  + A  GQK  L+E
Sbjct: 2  HYDYIAIGGGSGGIASINRAAMYGQKCALIE 32

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 2  EFSGENFDVIVVGAGIMGSSAAYQLAKRGQKT-LLLE 37
          + +G+ +D I+ G G+ G + A +L +  +   L++E
Sbjct: 19 KVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           + VVG  I G +AA  L   G    + E+
Sbjct: 6  RIAVVGGSISGLTAALMLRDAGVDVDVYER 35

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           ++D +V+G G  G ++A + A+ G +  ++E
Sbjct: 2  ASYDYLVIGGGSGGLASARRAAELGARAAVVE 33

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 12/90 (13%), Positives = 32/90 (35%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
            +D++V+GAG  G  A +  A   +K + +      H          T           
Sbjct: 2  RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKL 61

Query: 66 PMVLESSLLWEQAQSEIGYKVYFKAHQFDM 95
           +   + +   +  +  G+++  ++ + + 
Sbjct: 62 MVTGANYMDTIRESAGFGWELDRESVRPNW 91

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           + +VVGAG  G  AA + A+ GQK  ++E
Sbjct: 4  TETLVVGAGPGGYVAAIRAAQLGQKVTIVE 33

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 6   ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           + FD++V+GAG  G  AA+  A   +K + +     +H          T           
Sbjct: 2   KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKL 61

Query: 66  PMVLESSLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRK 112
            +     +   +  +  G++      + +   +        + +  K
Sbjct: 62  MVTGAQYMEHLRESAGFGWEFDRTTLRAEW-KNLIAVKDEAVLNINK 107

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 12/30 (40%), Positives = 22/30 (73%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +DV++VG+G  G++AA   A++G +T L+ 
Sbjct: 2  YDVLIVGSGPAGAAAAIYSARKGIRTGLMG 31

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
            V+GAGIMG   AYQ A +G   L+ +  +    +G +      +            +
Sbjct: 7  AAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKM 65

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
             ++++G G  G  AA +  + G  T+L+E 
Sbjct: 5  QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG 36

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLE 37
            D+ +VGAG  G  AA   A+     K  L+ 
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALIS 37

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 9  DVIVVGAGIMGSSAAYQLA-----KRGQKTLLLEQFDFLHHRGSSHG-ESRTIRA 57
          DV++VGAG  G  AA  L+     K   K  ++++     + G + G + RT+ +
Sbjct: 9  DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLES 63

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
          V V+G G+MG+  A   A  G   +L++Q + +  +     E    +    +   +P 
Sbjct: 7  VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPK 64

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 6  ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE---QFDFLHHRGSSHGESRTIRATYPED 62
           N  + +VG+G    +AA   A+   K LL E     D       +          +PE 
Sbjct: 4  HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEG 63

Query: 63 YYHPMVLESSLLWEQAQ 79
               + +     +Q++
Sbjct: 64 ILGVELTDKF--RKQSE 78

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAK----RGQKTLLLE 37
            D++++G G  G  AAY+ A      G K  L+E
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 55

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL 42
            DVI+VGAG  G SAAY +AK     K  ++E     
Sbjct: 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 7/43 (16%), Positives = 21/43 (48%)

Query: 7  NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49
          +  ++++G+G  G +AA   A+   + +L+   +      ++ 
Sbjct: 5  HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	100.0
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	100.0
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.95
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.75
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.72
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	99.71
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.67
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.67
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.66
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.63
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.58
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.51
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.46
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.46
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.44
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.43
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.41
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.39
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.31
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.31
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.28
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.28
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.27
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.26
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.25
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.22
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.22
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.21
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.19
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.18
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.18
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.17
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.17
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.13
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.12
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.11
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.09
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.09
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.08
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.05
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.05
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.05
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.04
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.04
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.04
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.03
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.03
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.02
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.01
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.97
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.95
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.94
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.92
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.92
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.89
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.83
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.82
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.77
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.75
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.75
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.71
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.7
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.68
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.67
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.62
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.6
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.59
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.58
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.58
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.54
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.52
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.49
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.49
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.47
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.47
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.45
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.44
d1kifa2	93	D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823	98.43
d1ryia2	88	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.41
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.39
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.35
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.34
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.32
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.29
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.24
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.17
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.15
d1c0pa2	95	D-aminoacid oxidase {Rhodotorula gracilis [TaxId:	98.02
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.95
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.84
d2gf3a2	104	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.82
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.72
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.54
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.53
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.37
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.29
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.28
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.2
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.14
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.05
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.95
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.84
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.84
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.81
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.73
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.73
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.71
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.66
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.55
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.47
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.46
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.45
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.15
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.82
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.8
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.79
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.77
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.71
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.7
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.64
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.61
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.57
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.5
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.5
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.49
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.45
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.44
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.42
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.38
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.34
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.32
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.28
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.27
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.17
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.05
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.87
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.79
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.7
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.63
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.51
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.26
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.01
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.92
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.87
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.82
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.67
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.66
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.64
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.63
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.63
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.54
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.51
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.5
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.12
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.08
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	92.85
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.53
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.53
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.04
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.94
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.87
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.8
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.52
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.15
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.99
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.92
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.8
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.78
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.73
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.68
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.29
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.2
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	89.44
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.43
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.27
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.07
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.95
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.89
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.83
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.76
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	88.49
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.33
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.25
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	88.0
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.86
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.84
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	87.81
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.49
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.37
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	86.58
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.2
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	86.13
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.89
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.53
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.52
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	84.46
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	84.4
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	84.32
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	84.32
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	83.96
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.9
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.89
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.82
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	83.76
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.75
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.64
d1pj5a3	119	N,N-dimethylglycine oxidase {Arthrobacter globifor	83.51
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.91
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	82.91
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	82.88
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	82.7
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	82.29
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.27
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	81.98
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	81.84
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	81.72
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.56
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	81.54
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	81.45
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	81.33
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	81.29
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	81.26
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.25
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.23
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.18
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.85
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.55
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	80.41
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	80.06

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=100.00  E-value=3.5e-35  Score=260.11  Aligned_cols=274  Identities=35%  Similarity=0.627  Sum_probs=226.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC-ccccchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   84 (413)
                      .+|||+|||||++|+++|++|+++|++|+|||+.+.+++.+++.+..+.++..+.. ..+.++...+.+.|.++.++.+.
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~   81 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence            46999999999999999999999999999999988776666666666666555543 44567788899999999999988


Q ss_pred             eeEeeeeeeeeC-CCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMG-PSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      +.+...+.+... ..+...+....+..+..+.+.+.++.+++.+.+|. ++.+....+++.+.+++++|..++..|.+.+
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~-~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a  160 (281)
T d2gf3a1          82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELA  160 (281)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTT-CCCCTTEEEEEETTCEEEEHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhc-ccccccceeeecccccccccccccccccccc
Confidence            887777766654 33345566777777888999999999999999998 7777888899999999999999999999999


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEEEEEecCCC
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVCYWRIKEGD  243 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~~~~~~~~~  243 (413)
                      ++.|++++++++|++|..  +  ++.+.|+|++|+ +.||+||+|+|+|+..+++++ |+.+                  
T Consensus       161 ~~~Gv~i~~~~~V~~i~~--~--~~~v~V~t~~g~-i~a~~VViAaG~~s~~l~~~l-g~~~------------------  216 (281)
T d2gf3a1         161 EARGAKVLTHTRVEDFDI--S--PDSVKIETANGS-YTADKLIVSMGAWNSKLLSKL-NLDI------------------  216 (281)
T ss_dssp             HHTTCEEECSCCEEEEEE--C--SSCEEEEETTEE-EEEEEEEECCGGGHHHHGGGG-TEEC------------------
T ss_pred             ccccccccCCcEEEEEEE--E--CCEEEEEECCcE-EEcCEEEECCCCcchhhHHhc-CCcc------------------
Confidence            999999999999999999  7  567899999887 999999999999999988776 3110                  


Q ss_pred             ccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCCCCCCceee
Q 015072          244 EADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQ  323 (413)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~  323 (413)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (281)
T d2gf3a1         217 --------------------------------------------------------------------------------  216 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccccCCC
Q 015072          324 LCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKEN  394 (413)
Q Consensus       324 ~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R~~~~  394 (413)
                             ++..+.++..|..  ++++++.|++|+|+.++|..|+++++++..+++ ..|+..|++.|+.-+
T Consensus       217 -------~~~~~~~~~~P~~--~~~~~~~g~~g~g~~~~p~~G~~~~~~~~~~~~-~~d~~~f~~~R~~~~  277 (281)
T d2gf3a1         217 -------PDEHFIIDLHPEH--SNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKT-EHDISIFSINRPALK  277 (281)
T ss_dssp             -------CTSCCEEEEETTE--EEEEEEECCTTCCGGGHHHHHHHHHHHHHHSCC-SSCCGGGCTTCGGGT
T ss_pred             -------ccccceeccccCC--CCEEEEeccCCcccccChhHHHHHHHHHhcCCC-CCCchhhCCCCccch
Confidence                   0122234445555  788999999999999999999999999998877 568999999997654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=100.00  E-value=1.3e-33  Score=249.32  Aligned_cols=267  Identities=22%  Similarity=0.347  Sum_probs=205.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCc---cccchHHHHHHHHHHHHH
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED---YYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   80 (413)
                      |++++||+|||||++|+++|++|+++|++|+|||+++.++  ++|+.+.|.++..+...   ...++...+.+.|+.+..
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~~--gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~~l~~   78 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGG--RTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGE   78 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTT--THHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHH
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC--Ccccccccccccccccccccccchhhhhhhhhcccccc
Confidence            3457999999999999999999999999999999987653  56666677766544322   234556667777765533


Q ss_pred             h----cCCee-EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHH
Q 015072           81 E----IGYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKA  155 (413)
Q Consensus        81 ~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  155 (413)
                      +    .++++ +...+.+.+.. .......+ .. .......+.++..++.+..|. +. .....+++.+.++.++|..+
T Consensus        79 ~~~~~~g~~~~~~~~g~l~l~~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~p~-~~-~~~~g~~~~~~~g~i~~~~~  153 (276)
T d1ryia1          79 ELYALSGVDIRQHNGGMFKLAF-SEEDVLQL-RQ-MDDLDSVSWYSKEEVLEKEPY-AS-GDIFGASFIQDDVHVEPYFV  153 (276)
T ss_dssp             HHHHHHCCCCCCBCCCEEEEES-SHHHHHHH-HT-TTTSTTEEEEEHHHHHHHCTT-SC-TTCCEEEEETTCCBCCHHHH
T ss_pred             ccccccccccccccccceeeee-eccccccc-cc-ccccccccccccccccccCcc-cc-cceeEEEEeccceeeecccc
Confidence            3    35554 33444444433 22222211 11 111224578889999999887 44 45677899999999999999


Q ss_pred             HHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEEEE
Q 015072          156 VSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETSVC  235 (413)
Q Consensus       156 ~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~~~  235 (413)
                      ++.|.+.+++.|++|+++++|++|..  +  ++.+.|++++|+ +.||.||+|+|+|+..+++++ |++           
T Consensus       154 ~~~l~~~~~~~Gv~i~~~~~V~~i~~--~--~~~~~V~t~~g~-i~a~~vV~AaG~~s~~l~~~~-G~~-----------  216 (276)
T d1ryia1         154 CKAYVKAAKMLGAEIFEHTPVLHVER--D--GEALFIKTPSGD-VWANHVVVASGVWSGMFFKQL-GLN-----------  216 (276)
T ss_dssp             HHHHHHHHHHTTCEEETTCCCCEEEC--S--SSSEEEEETTEE-EEEEEEEECCGGGTHHHHHHT-TCC-----------
T ss_pred             hhHHHHHHHHcCCEEecceEEEeEEe--e--cceEEEecCCeE-EEcCEEEECCCccHHHHHhhc-CCC-----------
Confidence            99999999999999999999999998  7  567889998886 999999999999999998876 421           


Q ss_pred             EEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHHHhhcCCCCC
Q 015072          236 YWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVD  315 (413)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~  315 (413)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (276)
T d1ryia1         217 --------------------------------------------------------------------------------  216 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceeeeeeeeccCCCCeEEecCCCCCCCCEEEEeCCCccccccchHHHHHHHHHHHcCCCCccccccccccc
Q 015072          316 SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIAR  390 (413)
Q Consensus       316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~~a~~i~~~~~~~~~~~~~~~~R  390 (413)
                                    +++..|+++.+|..  .++++++|+.++|+.++|..|+++++++++++....++.+|+|+|
T Consensus       217 --------------~~~~~p~~~~~p~~--~~~~~~~g~~~~gi~~~p~~g~~i~~~~~~~~~~~~~l~~f~~dr  275 (276)
T d1ryia1         217 --------------NADGKPYIGRHPED--SRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR  275 (276)
T ss_dssp             --------------CCSSCCEEEEETTE--EEEEEEECCSSCTTTTHHHHHHHHHHHHTTCCCCHHHHHHTCSCC
T ss_pred             --------------cccccceeccccCC--CCEEECCCCCCCeEEECccHHHHHHHHHhcCCCCcccccCCCCCC
Confidence                          24667899998887  889999999999999999999999999996766555689999998

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.95  E-value=4e-27  Score=210.36  Aligned_cols=219  Identities=18%  Similarity=0.231  Sum_probs=174.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      .||+|||||++|+++|++|+++|. +|+||||+....+.++|..+.|.++..+.......+...+...|.++.+. +...
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~~~~gas~~~~G~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~   80 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTED-GVSC   80 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEET-TEES
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCccccccccceeccCCCCHHHHHHHHHHHHHHHhhhhc-cccc
Confidence            589999999999999999999996 79999998765545677777888887777666677777778878777543 3333


Q ss_pred             EeeeeeeeeCCCC--hHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           87 YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      +...+.+......  .+........++..+.+.+.++.+++.+.++. ........+++.+.+++++|..++..+.+.++
T Consensus        81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~p~~l~~~l~~~a~  159 (305)
T d1pj5a2          81 FNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPL-LDGENILGGLHVPSDGLASAARAVQLLIKRTE  159 (305)
T ss_dssp             EECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTT-SCGGGCCEEEEETTCEEECHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHhhcccccccchHHhhhhccc-ccccccccceecccccccchhhhhhhHHhhhh
Confidence            5566666554322  23345556666777888899999999998887 44345577899999999999999999999999


Q ss_pred             HcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhhcCCCcceeEEEEE
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKISGLELPIQAVETS  233 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~~g~~~p~~~~~~~  233 (413)
                      +.|++++++++|++|..  +++ ..+.|.|++|+ ++||+||+|+|+|+.++++.+ |..+|+.+....
T Consensus       160 ~~gv~i~~~~~V~~i~~--~~~-~v~~V~T~~g~-i~a~~VV~aaG~~s~~l~~~~-g~~lP~~~~~~~  223 (305)
T d1pj5a2         160 SAGVTYRGSTTVTGIEQ--SGG-RVTGVQTADGV-IPADIVVSCAGFWGAKIGAMI-GMAVPPDGGPLL  223 (305)
T ss_dssp             HTTCEEECSCCEEEEEE--ETT-EEEEEEETTEE-EECSEEEECCGGGHHHHHHTT-TCCCCTTSCCEE
T ss_pred             cccccccCCceEEEEEE--eCC-EEEEEecccee-EECCEEEEecchhHHHHHHHc-CCcccccccccc
Confidence            99999999999999999  732 44568888886 999999999999999998887 888888765543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.75  E-value=7.2e-18  Score=146.42  Aligned_cols=184  Identities=13%  Similarity=-0.028  Sum_probs=102.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCC-----ccccchHHHHHHHHHHH
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-----DYYHPMVLESSLLWEQA   78 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   78 (413)
                      |....+|+|||||++|+++|++|+++|++|+|||++..++  +++..+.+.+......     .............+..+
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPED--VSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKW   80 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC--TTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCC--CcchhhhhhhcccccccccccchhhhhhhhhHHHHHHH
Confidence            4556789999999999999999999999999999987653  3444444443332211     11122222333344444


Q ss_pred             HHhcCCee-EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072           79 QSEIGYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      .+...... ....+...+........   .............++...           .......+...+..+|+..++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~d~~~~~~  146 (268)
T d1c0pa1          81 VELVPTGHAMWLKGTRRFAQNEDGLL---GHWYKDITPNYRPLPSSE-----------CPPGAIGVTYDTLSVHAPKYCQ  146 (268)
T ss_dssp             HHHTTTTSSEEEEEEEEEESSGGGGG---GGTTTTTSTTCEECCGGG-----------SSTTCEEEEEEEEECCHHHHHH
T ss_pred             HHHHhhhhhheeccEEEEEecchhhh---hHHHHhhccccccCchhh-----------cccccccccccceecCHHHHHH
Confidence            44333221 23333333322211110   000111111122222211           1112223444567889999999


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      .+.+.+++.|++|+. .+|+++..                ....++.||+|+|.|+..+....
T Consensus       147 ~l~~~~~~~Gv~i~~-~~v~~~~~----------------~~~~~~~vv~a~G~~a~~l~~~~  192 (268)
T d1c0pa1         147 YLARELQKLGATFER-RTVTSLEQ----------------AFDGADLVVNATGLGAKSIAGID  192 (268)
T ss_dssp             HHHHHHHHTTCEEEE-CCCSBGGG----------------TCSSCSEEEECCGGGGGTSBTTC
T ss_pred             HHHHHHHHCCCEEEE-eEecchHH----------------ccccceEEEECCchhhhhhhhhc
Confidence            999999999998863 23322211                12458999999999998765543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.72  E-value=4.1e-17  Score=144.87  Aligned_cols=190  Identities=19%  Similarity=0.212  Sum_probs=107.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHH-HHHHHHHHHhcC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLES-SLLWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   83 (413)
                      ..++||||||||++|+++|++|+++|++|+||||.+..++  +|....+.+...............+ ...+.+.... +
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG--~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~-~   90 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG--NAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKG-G   90 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--TGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHH-T
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC--cceecCCCCccccchhhhhhhccchHHHHHHHHHhh-h
Confidence            3469999999999999999999999999999999987753  3333333333222111000000001 1111111111 1


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      .... . ..+.  ..-.+...+..+++...|+++.....      ..     .......+.+.........+++.+.+.+
T Consensus        91 ~~~~-d-~~lv--~~~~~~~~~~i~~L~~~Gv~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~a  155 (308)
T d1y0pa2          91 QNIN-D-PALV--KVLSSHSKDSVDWMTAMGADLTDVGM------MG-----GASVNRAHRPTGGAGVGAHVVQVLYDNA  155 (308)
T ss_dssp             TTCS-C-HHHH--HHHHHHHHHHHHHHHHTTCCCCEEEC------CT-----TCSSCCEEESTTTCCHHHHHHHHHHHHH
T ss_pred             hhcc-c-hHHH--HHHHHhhhHHHHHHHHcCCCcccccc------cc-----ccccccccccccccchHHHHHHHHHHHH
Confidence            0000 0 0000  00001113344556666665432210      00     1111223334444445567888899999


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCC--cEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      .+.|++++++++|+++..  ++++.  ++.+...++.  +++|+.||+|||.++.
T Consensus       156 ~~~gv~i~~~~~v~~li~--~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  208 (308)
T d1y0pa2         156 VKRNIDLRMNTRGIEVLK--DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  208 (308)
T ss_dssp             HHTTCEEESSEEEEEEEE--CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HhccceEEEeeccchhhh--hcccccccccccccccceeEeecCeEEEccCcccc
Confidence            999999999999999988  64333  3344444433  6899999999999875

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.71  E-value=7.2e-19  Score=151.04  Aligned_cols=182  Identities=12%  Similarity=0.091  Sum_probs=103.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC----CCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhc--
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL----HHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEI--   82 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   82 (413)
                      +|+|||||++|+++|++|+++|++|+++|+....    .+..++....+.+.+.............+...+.......  
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~~~~ts~~a~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGS   81 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCTTSSSGGGSCCBCCCCSSCCSSTHHHHHHHHHHHHHHTTTTS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCCCCChhHhhhceecccccccccHHHHHHHHHHHHHhhhhhcc
Confidence            4999999999999999999999987777663321    1223444445555544433333334444444444443321  


Q ss_pred             --CCee-EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHH
Q 015072           83 --GYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMF  159 (413)
Q Consensus        83 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                        .... +...+.+.+.......     ...+......+.+.....    +    ........+.+.++++||..++.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~----~----~~~~~~~~~~~~~~~id~~~~~~~L  148 (246)
T d1kifa1          82 PNAANMGLTPVSGYNLFREAVPD-----PYWKDMVLGFRKLTPREL----D----MFPDYRYGWFNTSLILEGRKYLQWL  148 (246)
T ss_dssp             TTTTTTTEEEEEEEEEESSCCCC-----CTTTTTSEEEEECCHHHH----T----TSTTCCEEEEEEEEEECHHHHHHHH
T ss_pred             ccCCceeEEEcccEEEecCchhh-----hhHHhhccchhhhccccc----c----CCcccceEEEccceEEcHHHHHHHH
Confidence              1111 2223333322111000     000111111233333221    1    1234456677888999999999999


Q ss_pred             HHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhh
Q 015072          160 QTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKK  219 (413)
Q Consensus       160 ~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~  219 (413)
                      .+.+++.|++|+.. +|++++.  .            + ...+|.||+|||.|+..+..+
T Consensus       149 ~~~~~~~G~~~~~~-~v~~l~~--~------------~-~~~~d~vVnctG~~a~~l~~d  192 (246)
T d1kifa1         149 TERLTERGVKFFLR-KVESFEE--V------------A-RGGADVIINCTGVWAGVLQPD  192 (246)
T ss_dssp             HHHHHHTTCEEEEC-CCCCHHH--H------------H-HTTCSEEEECCGGGHHHHSCC
T ss_pred             HHHHHHCCCEEEEe-EeCCHHH--h------------c-cCCCCEEEECCcccccccCCC
Confidence            99999999998743 4554433  2            0 134789999999999877553

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.69  E-value=1.1e-16  Score=137.55  Aligned_cols=167  Identities=22%  Similarity=0.212  Sum_probs=94.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      +|||+|||||++|+++|+.|+++|++|+|||+++..++.....+.....   ....  ...        ..+........
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~---~~~~--~~~--------~~~~~~~~~~~   68 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCN---VTNR--LPL--------DEIVKHIPGNG   68 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCC---CEEC--SCH--------HHHHHTCTBTG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCccee---cccc--ccc--------chhhcccccch
Confidence            4999999999999999999999999999999987764321111110000   0000  000        00000000000


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                           ..................+...+++......                 .. ..+  .......+.+.|.+.+++.
T Consensus        69 -----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~-~~~--~~~~~~~i~~~L~~~~~~~  123 (251)
T d2i0za1          69 -----RFLYSAFSIFNNEDIITFFENLGVKLKEEDH-----------------GR-MFP--VSNKAQSVVDALLTRLKDL  123 (251)
T ss_dssp             -----GGGHHHHHHSCHHHHHHHHHHTTCCEEECGG-----------------GE-EEE--TTCCHHHHHHHHHHHHHHT
T ss_pred             -----hhhhhhhhhhhhHHHHHHHHhcCCccccccc-----------------cc-eec--ccccHHHHHHHHHHHHHHc
Confidence                 0000000000001222333333432211110                 00 011  1112356788899999999


Q ss_pred             CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          167 GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       167 gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      |++++++++|++|..  ++ +....|.++++++++||+||+|+|+.+-
T Consensus       124 gv~i~~~~~v~~i~~--~~-~~~~~v~~~~g~~i~a~~vI~AtGg~S~  168 (251)
T d2i0za1         124 GVKIRTNTPVETIEY--EN-GQTKAVILQTGEVLETNHVVIAVGGKSV  168 (251)
T ss_dssp             TCEEECSCCEEEEEE--ET-TEEEEEEETTCCEEECSCEEECCCCSSS
T ss_pred             CCcccCCcEEEEEEE--EC-CEEEEEEeCCCCeEecCeEEEccCCccc
Confidence            999999999999998  63 2344577888988999999999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.67  E-value=2.2e-16  Score=135.83  Aligned_cols=161  Identities=16%  Similarity=0.119  Sum_probs=92.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcc-eecccCCc-c----ccchHHHHHHHHHH
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT-IRATYPED-Y----YHPMVLESSLLWEQ   77 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~-~~~~~~~~-~----~~~~~~~~~~~~~~   77 (413)
                      |.+.+||+|||||++|+++|+.|+++|++|+|||+.+..+......+..++ +.+....+ .    ..+......     
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l-----   75 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSAL-----   75 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHH-----
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHh-----
Confidence            345699999999999999999999999999999999876422111111111 11110000 0    000000000     


Q ss_pred             HHHhcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHH
Q 015072           78 AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVS  157 (413)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                        ..                   .........+...+.....-+                 ....+...    ....+.+
T Consensus        76 --~~-------------------~~~~~~~~~~~~~g~~~~~~~-----------------~~~~~~~~----~a~~i~~  113 (253)
T d2gqfa1          76 --AR-------------------YTNWDFISLVAEQGITYHEKE-----------------LGQLFCDE----GAEQIVE  113 (253)
T ss_dssp             --HH-------------------SCHHHHHHHHHHTTCCEEECS-----------------TTEEEETT----CTHHHHH
T ss_pred             --hh-------------------hcccchhhhhhhcCcceeeec-----------------CCcccccc----chhHHHH
Confidence              00                   000122233333333211100                 01111111    2367888


Q ss_pred             HHHHHHHHcCCeEecCceEEEEEeeeccCCC--cEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          158 MFQTLAIKNGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      .|.+.+++.|++++++++|+++..  .+++.  .+.+. .++++++||+||+|||..+-
T Consensus       114 ~L~~~~~~~gV~i~~~~~V~~i~~--~~~~~~v~~~~~-~~~~~~~a~~VIiAtGG~S~  169 (253)
T d2gqfa1         114 MLKSECDKYGAKILLRSEVSQVER--IQNDEKVRFVLQ-VNSTQWQCKNLIVATGGLSM  169 (253)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEE--CCSCSSCCEEEE-ETTEEEEESEEEECCCCSSC
T ss_pred             HHHHHHHHcCCCeecCceEEEEEe--ecCCceeEEEEe-cCCEEEEeCEEEEcCCcccc
Confidence            899999999999999999999998  53332  23343 45556999999999998763

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.67  E-value=3.7e-16  Score=139.41  Aligned_cols=189  Identities=17%  Similarity=0.165  Sum_probs=106.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccc-cchHHHHHHHHHHHHHhcCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYY-HPMVLESSLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   84 (413)
                      +++||+|||+|++|+++|+.|+++|++|+||||.+..++  +|....+.+......... ..........++.+..... 
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG--~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~-   98 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG--NTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGR-   98 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCT--TGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT-
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC--cccccCCcccccCchhhhhcccCCCHHHHHHHHHhccc-
Confidence            468999999999999999999999999999999988753  333333333221110000 0000000111222221110 


Q ss_pred             eeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHH
Q 015072           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      ..... ..+.   .-.+...+.++++...|+++..+.      .++.     ......+.+..+......+.+.|.+.+.
T Consensus        99 ~~~d~-~~~~---~~~~~~~~~i~~l~~~Gv~~~~~~------~~~g-----~~~~~~~~~~~~~~~~~~~~~~l~~~a~  163 (322)
T d1d4ca2          99 NINDP-ELVK---VLANNSSDSIDWLTSMGADMTDVG------RMGG-----ASVNRSHRPTGGAGVGAHVAQVLWDNAV  163 (322)
T ss_dssp             TCSCH-HHHH---HHHHTHHHHHHHHHHTTCCCCEEE------CCTT-----CSSCCEEESTTTCCSHHHHHHHHHHHHH
T ss_pred             cccCH-HHhh---hhhhhhhhhhhhhhhhcccccccc------cccc-----cccccccccccccchhHHHHHHHHHHHH
Confidence            00000 0000   000111334455666666543221      1111     1111223334444456778899999999


Q ss_pred             HcCCeEecCceEEEEEeeeccCCC--cEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      +.|++|+++++|+++..  ++++.  ++.+...++.  .+.|+.||+|||.++.
T Consensus       164 ~~gv~i~~~t~v~~li~--d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         164 KRGTDIRLNSRVVRILE--DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             HTTCEEETTEEEEEEEC--CSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             hcCceEEEeeecccccc--cccccccceEEEeecccEEEEeCCeEEEcCCCccc
Confidence            99999999999999988  64333  3444444433  6899999999999875

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.63  E-value=1.2e-15  Score=135.68  Aligned_cols=190  Identities=18%  Similarity=0.137  Sum_probs=106.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHH-HHHHHHHHHhcC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLES-SLLWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   83 (413)
                      .+++||||||+|++|+++|++|+++|++|+||||.+..++  +|..+.+.+...............+ ...++++.....
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG--~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~   94 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG--NSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGR   94 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT--TGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC--chhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhc
Confidence            4579999999999999999999999999999999987753  3333333333211110000000000 111222221111


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      ......  .+   ..-.+...+.++++...|+++.....      ...     ........+..+......+++.|.+.+
T Consensus        95 ~~~d~~--lv---~~~~~~a~~~i~~l~~~Gv~~~~~~~------~gg-----~~~~r~~~~~~g~~~g~~i~~~L~~~~  158 (317)
T d1qo8a2          95 QQNDIK--LV---TILAEQSADGVQWLESLGANLDDLKR------SGG-----ARVDRTHRPHGGKSSGPEIIDTLRKAA  158 (317)
T ss_dssp             TCSCHH--HH---HHHHHHHHHHHHHHHHTTCCCCEEEC------CTT-----CSSCCEEECSSSSCHHHHHHHHHHHHH
T ss_pred             cccchh--HH---HHHHhhhhhhhhhHHHhhhccccccc------ccC-----cccccccccccccccchhhhHHHHHHh
Confidence            000000  00   00001112334555666665422110      011     011112233344445567889999999


Q ss_pred             HHcCCeEecCceEEEEEeeeccCCC--cEEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          164 IKNGAVLRDNTEVKTVLKVKDDVRG--GVTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ++.|++++++++|+++..  ++++.  ++.+...+++  .+.|+.||+|||.|..
T Consensus       159 ~~~g~~i~~~~~v~~l~~--~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         159 KEQGIDTRLNSRVVKLVV--NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             HHTTCCEECSEEEEEEEE--CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             hhccceeeeccchhheee--cccccceeeEeecccceEEEEeccceEEecccccc
Confidence            999999999999999977  54333  3444555554  5889999999999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=3.2e-15  Score=129.64  Aligned_cols=45  Identities=29%  Similarity=0.436  Sum_probs=41.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      |+.+|||||||||++|+++|+.|+++|++|+|||+++..||+.++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t   46 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   46 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEE
Confidence            667899999999999999999999999999999999988876654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.51  E-value=7.7e-14  Score=124.98  Aligned_cols=61  Identities=16%  Similarity=0.300  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEE-eCCcc--EEEeCeEEEcCCcChh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVV-TSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~-~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      ...+...|.+.+.+.|++|+.++.++++..  +++. .++.+. ..+|+  ++.|+.||+|||.+..
T Consensus       157 G~~i~~~l~~~~~~~gv~i~~~~~~~~li~--~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVSIQDRKEAIALIH--QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEE--ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHHhccccccceeeeeeccc--ccccccceeEEeccCCcEEEEecCeEEEecccccc
Confidence            467788888999999999999999999988  6331 122333 35665  6899999999999875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.46  E-value=3.8e-13  Score=117.29  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCC--eEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          153 TKAVSMFQTLAIKNGA--VLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv--~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ..+.+++...+++.++  .|+++++|+++..  +++.+.|.|++.+++++++|.||+|+|..+.+..+.+
T Consensus        85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~--de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~  152 (298)
T d1w4xa1          85 PEILRYINFVADKFDLRSGITFHTTVTAAAF--DEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGAL  152 (298)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEE--ETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHH
T ss_pred             chHHHHHHHHHHHcCCcccccCCcEEEEEEE--ecCCCceeeccccccccccceEEEeecccccccCCcc
Confidence            5677778888888887  5999999999997  6445789999999989999999999999887666655

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=124.65  Aligned_cols=41  Identities=39%  Similarity=0.494  Sum_probs=38.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~   49 (413)
                      ||+|||||++|+++|++|+++|++|+|+|+.+..||+..+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~   41 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL   41 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEE
Confidence            89999999999999999999999999999999988876654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.44  E-value=1.1e-13  Score=122.85  Aligned_cols=43  Identities=37%  Similarity=0.509  Sum_probs=38.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~   50 (413)
                      +||+|||||++|+++|++|+++|++|+|+|+.+..||+..+..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~   43 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA   43 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEe
Confidence            4799999999999999999999999999999999888766543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.3e-12  Score=114.74  Aligned_cols=200  Identities=16%  Similarity=0.159  Sum_probs=105.1

Q ss_pred             CCCCCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHH
Q 015072            1 MEFSGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQS   80 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (413)
                      |+...+++||+|||+|++||++|+.++++|.+|+|+||.+..++  .|....|.+............    ...+.+..+
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg--~s~~A~GGi~a~~~~~~~Ds~----e~~~~Dtl~   74 (330)
T d1neka2           1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS--HTVSAQGGITVALGNTHEDNW----EWHMYDTVK   74 (330)
T ss_dssp             CCCCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGS--GGGGCCSCEECCCCSSSCCCH----HHHHHHHHH
T ss_pred             CCCCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCC--cHHHHhhhHheEcCCCCCCCH----HHHHHHHHH
Confidence            66556789999999999999999999999999999999877643  222222223221111000000    111111111


Q ss_pred             hcCCeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHh-cCC-cccCCCCeEEEEecCCeeecHHHHHHH
Q 015072           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQK-YSG-RIEIPENWVGVTTELGGVIKPTKAVSM  158 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~-~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                      . +... .....+.   .-.+.-.+.++++...++++........... +.. ......... ......+......+...
T Consensus        75 a-G~~l-~d~~~v~---~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~-~~~~~~~d~~G~~i~~~  148 (330)
T d1neka2          75 G-SDYI-GDQDAIE---YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQA-ARTAAAADRTGHALLHT  148 (330)
T ss_dssp             H-HTSC-SCHHHHH---HHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSS-EEEECCTTCHHHHHHHH
T ss_pred             h-hhhc-cCHHHHH---HHHHHhHHHHHHHhhccccccccCCCceehhccCcccccccCccc-ccccccCCccHHHHHHH
Confidence            1 0000 0000000   0001113345566677776543332211000 000 000000000 00001111123567788


Q ss_pred             HHHHHHHcCCeEecCceEEEEEeeeccCCCc---EEEEeCCcc--EEEeCeEEEcCCcChh
Q 015072          159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGG---VTVVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~---~~v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                      |.+.+++.+++++.++.+.++..  .+++..   +.....+|+  .+.++.||+|||.+..
T Consensus       149 L~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         149 LYQQNLKNHTTIFSEWYALDLVK--NQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEE--CTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGG
T ss_pred             HHHHHHhcCCeEEEEEEEEEeee--eccccceeeeeEEccCCcEEEEeccEEEEcCCCccc
Confidence            88888889999999999999877  533322   223445666  6889999999999875

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=6.8e-13  Score=116.96  Aligned_cols=187  Identities=13%  Similarity=0.045  Sum_probs=94.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||+|++|+++|+.++++  |.+|+|+||....++  .|....|.+.....+.+..+      ..+.+......
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g--~s~~A~GGi~a~~~~~Ds~e------~~~~dt~~~g~   75 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS--HTVAAEGGSAAVAQDHDSFE------YHFHDTVAGGD   75 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS--GGGGCCSCEECCCSTTCCHH------HHHHHHHHHTT
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC--cHHHHhhhHhhhcCCCCCHH------HHHHHHHhhcc
Confidence            469999999999999999999987  679999999876542  33222333322222211111      11222211111


Q ss_pred             CeeEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHH-HhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHH
Q 015072           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-QKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      .... + ..+   ..-.+.......++...+.++......... ..++.     ......+....  .....++..+.+.
T Consensus        76 ~~~d-~-~~v---~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~-----~~~~r~~~~~~--~~g~~~~~~~l~~  143 (311)
T d1kf6a2          76 WLCE-Q-DVV---DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGG-----MKIERTWFAAD--KTGFHMLHTLFQT  143 (311)
T ss_dssp             TCSC-H-HHH---HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTT-----CSSCCEECSTT--CHHHHHHHHHHHH
T ss_pred             CccH-H-HHH---HHHHHhhhHhHHhhhhcccccccccccccccccccc-----ccccccccccc--chhhHHHHhHHHH
Confidence            0000 0 000   000011123344555666554333211100 00010     00001111111  1123344444444


Q ss_pred             -HHHcCCeEecCceEEEEEeeeccCC-CcEE-EEeCCcc--EEEeCeEEEcCCcChh
Q 015072          163 -AIKNGAVLRDNTEVKTVLKVKDDVR-GGVT-VVTSSGE--EFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 -~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~-v~~~~g~--~i~ad~vV~A~G~~~~  214 (413)
                       .+..+++++.+++|++|..  +++. .++. +...+|+  .+.|+.||+|||.+..
T Consensus       144 ~~~~~~v~i~~~~~v~~Ll~--d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         144 SLQFPQIQRFDEHFVLDILV--DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             HTTCTTEEEEETEEEEEEEE--ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHccCcceeEeeeEeeeeEe--cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccc
Confidence             4445799999999999988  7432 1222 2346676  5689999999999875

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=5.9e-12  Score=93.13  Aligned_cols=53  Identities=19%  Similarity=0.198  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCC
Q 015072          155 AVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAG  210 (413)
Q Consensus       155 ~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G  210 (413)
                      +.+.+.+.++++|+++++++.|+++..  ++ +..+.+++++|+++.+|.||+|+|
T Consensus        64 ~~~~~~~~l~~~GV~~~~~~~v~~i~~--~~-~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          64 ISETLVEVMNAEGPQLHTNAIPKAVVK--NT-DGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHHHSCEEECSCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECSC
T ss_pred             hHHHHHHHHHHCCCEEEeCCEEEEEEE--cC-CcEEEEEECCCCEEEcCEEEEecC
Confidence            445566777888999999999999988  63 245788899999999999999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.31  E-value=3.7e-11  Score=90.97  Aligned_cols=98  Identities=18%  Similarity=0.255  Sum_probs=76.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+++|||||++|+-+|..|++.|.+|+|+|+.+.....                                         
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~-----------------------------------------   73 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-----------------------------------------   73 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc-----------------------------------------
Confidence            468999999999999999999999999999997654100                                         


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                      .+                               +..+.+.+.+.++++
T Consensus        74 --------------------------------~~-------------------------------~~~~~~~~~~~~~~~   90 (133)
T d1q1ra2          74 --------------------------------VT-------------------------------APPVSAFYEHLHREA   90 (133)
T ss_dssp             --------------------------------TS-------------------------------CHHHHHHHHHHHHHH
T ss_pred             --------------------------------cc-------------------------------chhhhhhhhhccccc
Confidence                                            00                               022334455667788


Q ss_pred             CCeEecCceEEEEEeeeccCC-CcEEEEeCCccEEEeCeEEEcCC
Q 015072          167 GAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGEEFWGKKCVVTAG  210 (413)
Q Consensus       167 gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~~i~ad~vV~A~G  210 (413)
                      |+++++++.|++++.  ..++ ....+.+++|+++.+|.||+|+|
T Consensus        91 GV~i~~~~~v~~i~~--~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          91 GVDIRTGTQVCGFEM--STDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             TCEEECSCCEEEEEE--CTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccEEEeCCeEEEEEE--eCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999999988  6433 33457889999999999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.31  E-value=3.4e-12  Score=114.59  Aligned_cols=44  Identities=36%  Similarity=0.450  Sum_probs=39.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~   49 (413)
                      +..+|+|||||++|+++|++|+++|++|+|+|+.+..||+..+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~   72 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTY   72 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEE
Confidence            45689999999999999999999999999999999888776653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.28  E-value=8.1e-11  Score=101.03  Aligned_cols=46  Identities=11%  Similarity=-0.022  Sum_probs=40.7

Q ss_pred             HcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChh
Q 015072          165 KNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~  214 (413)
                      ..++.++++++|+++..  .  .+.+.++++||+++++|.+|.|.|.++.
T Consensus       108 ~~~~~~~~~~~v~~~~~--~--~~~v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1         108 FGPERYHTSKCLVGLSQ--D--SETVQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             HCSTTEETTCCEEEEEE--C--SSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             cccceeecCcEEEEEEe--e--CCceEEEECCCCEEEEEEEecccccccc
Confidence            35688999999999998  7  5678999999999999999999998875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.28  E-value=6.1e-11  Score=87.89  Aligned_cols=95  Identities=22%  Similarity=0.235  Sum_probs=74.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+++|||||+.|+-+|..|++.|.+|+|+|+.+..-.                                          
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~------------------------------------------   59 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP------------------------------------------   59 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------------------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC------------------------------------------
Confidence            46799999999999999999999999999998754310                                          


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                                  . +.                  .++.+.+.+.+++.
T Consensus        60 --------------------------------------------~-~d------------------~ei~~~l~~~l~~~   76 (119)
T d3lada2          60 --------------------------------------------A-VD------------------EQVAKEAQKILTKQ   76 (119)
T ss_dssp             --------------------------------------------T-SC------------------HHHHHHHHHHHHHT
T ss_pred             --------------------------------------------c-cc------------------chhHHHHHHHHHhc
Confidence                                                        0 00                  34455666778889


Q ss_pred             CCeEecCceEEEEEeeeccCCCcEEEEeC--Cc-cEEEeCeEEEcCC
Q 015072          167 GAVLRDNTEVKTVLKVKDDVRGGVTVVTS--SG-EEFWGKKCVVTAG  210 (413)
Q Consensus       167 gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g-~~i~ad~vV~A~G  210 (413)
                      |++++++++|++++.  +  ++.+.++..  ++ +++.||.|++|+|
T Consensus        77 Gv~i~~~~~v~~i~~--~--~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          77 GLKILLGARVTGTEV--K--NKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TEEEEETCEEEEEEE--C--SSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             CceeecCcEEEEEEE--e--CCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            999999999999998  7  345555543  33 3799999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.27  E-value=5.3e-11  Score=88.35  Aligned_cols=92  Identities=22%  Similarity=0.301  Sum_probs=72.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+++|||||++|+-+|..|+++|.+|+|+|+.+..-..                                         
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----------------------------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc-----------------------------------------
Confidence            468999999999999999999999999999987643100                                         


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                      .+                               +..+.+.+.+.++++
T Consensus        69 --------------------------------~~-------------------------------~~~~~~~~~~~l~~~   85 (121)
T d1d7ya2          69 --------------------------------AA-------------------------------PATLADFVARYHAAQ   85 (121)
T ss_dssp             --------------------------------TS-------------------------------CHHHHHHHHHHHHTT
T ss_pred             --------------------------------cC-------------------------------CHHHHHHHHHHHHHC
Confidence                                            00                               023444556777889


Q ss_pred             CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCC
Q 015072          167 GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAG  210 (413)
Q Consensus       167 gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G  210 (413)
                      |+++++++.|+++..  .      .+.++||+++.||.||+|+|
T Consensus        86 GV~i~~~~~v~~~~~--~------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          86 GVDLRFERSVTGSVD--G------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TCEEEESCCEEEEET--T------EEEETTSCEEECSEEEECSC
T ss_pred             CcEEEeCCEEEEEeC--C------EEEECCCCEEECCEEEEeeC
Confidence            999999999988765  3      35678899999999999998

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.26  E-value=5e-11  Score=106.16  Aligned_cols=63  Identities=13%  Similarity=0.037  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCC---cc---EEEeCeEEEcCCcChhhhhh
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSS---GE---EFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~---~i~ad~vV~A~G~~~~~l~~  218 (413)
                      ...+.+.|...+...+..|+++++|++|+.  +  ++.|.|++.+   ++   +..||.||+|+|.++.+..+
T Consensus       112 ~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~--~--~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~~~  180 (335)
T d2gv8a1         112 RHTIQEYQRIYAQPLLPFIKLATDVLDIEK--K--DGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYTG  180 (335)
T ss_dssp             HHHHHHHHHHHHGGGGGGEECSEEEEEEEE--E--TTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCCC
T ss_pred             hHHHHHHHHHHHHHhhhcccCceEEEEEEe--c--CCEEEEEEEecCCCCeEEEEEeeEEEEcccccccceec
Confidence            356667777777777788999999999999  7  4566665432   22   45799999999998864433

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.25  E-value=2.9e-11  Score=105.60  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ++||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            48999999999999999999999999999999764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.22  E-value=1.8e-10  Score=85.22  Aligned_cols=54  Identities=22%  Similarity=0.197  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCC
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAG  210 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G  210 (413)
                      ++.+.+.+.++++|+++++++.|++|..  .+ ++...+.+++|+++.||.||+|+|
T Consensus        63 ~~~~~~~~~l~~~GI~v~~~~~v~~i~~--~~-~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          63 ELRKQLTEQLRANGINVRTHENPAKVTK--NA-DGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECSC
T ss_pred             hhhHHHHHHHhhCcEEEEcCCEEEEEEE--CC-CCEEEEEECCCCEEEcCEEEEecC
Confidence            3445666778889999999999999988  53 245678889999999999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.22  E-value=5.5e-11  Score=87.71  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            368999999999999999999999999999997543

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=3.6e-11  Score=105.63  Aligned_cols=39  Identities=26%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ++++||||||+|++|+++|+.+++.| +|+||||.+..++
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG   43 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG   43 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCC
Confidence            35699999999999999999999888 9999999987653

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.1e-10  Score=87.30  Aligned_cols=52  Identities=15%  Similarity=0.157  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCC
Q 015072          155 AVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAG  210 (413)
Q Consensus       155 ~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G  210 (413)
                      +.+.+.+.+++.|+++++++.|+++..  +  ++.+.+++++|+++.||.||+|+|
T Consensus        85 ~~~~~~~~l~~~GV~~~~~~~V~~i~~--~--~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          85 LSNWTMEKVRREGVKVMPNAIVQSVGV--S--SGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHTTTCEEECSCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHhCCcEEEeCCEEEEEEe--c--CCEEEEEECCCCEEECCEEEEeec
Confidence            444566777889999999999999988  7  567789999999999999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=3.9e-10  Score=83.82  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||+.|+-+|..|++.|.+|+|+|+.+..
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            468999999999999999999999999999987543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=9.8e-11  Score=95.94  Aligned_cols=34  Identities=38%  Similarity=0.635  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|||||||||.+|+.+|+.+++.|.+++||+++.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            5999999999999999999999999999999863

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.17  E-value=5.2e-10  Score=82.34  Aligned_cols=95  Identities=11%  Similarity=0.144  Sum_probs=75.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+..-   .                                       
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il---~---------------------------------------   59 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL---R---------------------------------------   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC---T---------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc---c---------------------------------------
Confidence            4579999999999999999999999999999875431   0                                       


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                                  . +                  +..+.+.+.+.+++.
T Consensus        60 --------------------------------------------~-~------------------d~~~~~~~~~~l~~~   76 (117)
T d1onfa2          60 --------------------------------------------K-F------------------DESVINVLENDMKKN   76 (117)
T ss_dssp             --------------------------------------------T-S------------------CHHHHHHHHHHHHHT
T ss_pred             --------------------------------------------c-c------------------cHHHHHHHHHHHHhC
Confidence                                                        0 0                  034455666778889


Q ss_pred             CCeEecCceEEEEEeeeccCCCcEEEEeCCccEEE-eCeEEEcC
Q 015072          167 GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFW-GKKCVVTA  209 (413)
Q Consensus       167 gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~-ad~vV~A~  209 (413)
                      |++++++++|++++.  .++ +.+.+++++|+++. +|.||+|.
T Consensus        77 gV~i~~~~~v~~i~~--~~~-~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          77 NINIVTFADVVEIKK--VSD-KNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TCEEECSCCEEEEEE--SST-TCEEEEETTSCEEEEESEEEECC
T ss_pred             CCEEEECCEEEEEEE--cCC-CeEEEEECCCCEEEeCCEEEEeC
Confidence            999999999999987  532 56788899998664 69999983

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.17  E-value=1.1e-10  Score=104.75  Aligned_cols=39  Identities=31%  Similarity=0.508  Sum_probs=34.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHH----cCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAK----RGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~----~g~~V~lvE~~~~~~~   44 (413)
                      .++||||||+|++|+++|+.|++    +|++|+||||....++
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg   62 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS   62 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence            35899999999999999999986    5999999999887754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.13  E-value=3.7e-10  Score=84.10  Aligned_cols=97  Identities=20%  Similarity=0.171  Sum_probs=73.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCee
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+++|||||+.|+-+|..+++.|.+|+|+|+.+..-.   .                                      
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~---~--------------------------------------   64 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ---G--------------------------------------   64 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST---T--------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc---c--------------------------------------
Confidence            46799999999999999999999999999999754310   0                                      


Q ss_pred             EeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHHc
Q 015072           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                       .+                               ..+.+.+.+.+++.
T Consensus        65 ---------------------------------~d-------------------------------~~~~~~l~~~l~~~   80 (125)
T d1ojta2          65 ---------------------------------AD-------------------------------RDLVKVWQKQNEYR   80 (125)
T ss_dssp             ---------------------------------SC-------------------------------HHHHHHHHHHHGGG
T ss_pred             ---------------------------------ch-------------------------------hhHHHHHHHHHHHc
Confidence                                             00                               24445566778889


Q ss_pred             CCeEecCceEEEEEeeeccCCCcEEEEeCCcc--EEEeCeEEEcCC
Q 015072          167 GAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE--EFWGKKCVVTAG  210 (413)
Q Consensus       167 gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~vV~A~G  210 (413)
                      |++++.+++|++++.  .+++..+.++..+|+  ++.+|.|++|+|
T Consensus        81 gv~~~~~~~v~~v~~--~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          81 FDNIMVNTKTVAVEP--KEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             EEEEECSCEEEEEEE--ETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             CcccccCcEEEEEEE--cCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            999999999999998  632222333344433  699999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.12  E-value=6.6e-10  Score=82.12  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            468999999999999999999999999999987653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.11  E-value=1.4e-09  Score=80.16  Aligned_cols=53  Identities=13%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcC
Q 015072          154 KAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTA  209 (413)
Q Consensus       154 ~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~  209 (413)
                      .+.+.+.+.+++.|++++++++|++++.  .+ ++.+.+++++|+++.||.||+|.
T Consensus        65 ~~~~~l~~~l~~~GV~v~~~~~v~~ie~--~~-~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          65 TLREELTKQLTANGIQILTKENPAKVEL--NA-DGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHHhcCcEEEcCCEEEEEEE--cC-CCeEEEEECCCcEEEeCEEEEeC
Confidence            4445667788889999999999999987  52 25677889999999999999983

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.09  E-value=9.9e-10  Score=81.73  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+++|||||+.|+-.|..|++.|.+|+|+|+.+..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            457999999999999999999999999999997653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.09  E-value=6.7e-10  Score=82.67  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|+|||||+.|+-+|..|+++|.+|+|+|+.+.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            35899999999999999999999999999999754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.08  E-value=2.1e-10  Score=99.47  Aligned_cols=36  Identities=39%  Similarity=0.556  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLH   43 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~   43 (413)
                      +||+|||||++|+++|+.|+++|. +|+|+|+.+...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            689999999999999999999996 999999987653

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.05  E-value=6.8e-10  Score=99.53  Aligned_cols=34  Identities=47%  Similarity=0.621  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .||+||||+|.+|+.+|.+|++.|++|+|||++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5999999999999999999999999999999984

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.05  E-value=9.4e-10  Score=99.20  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=33.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++||||||+|.+|+.+|++|+++|++|+|||++.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46999999999999999999999999999999873

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.05  E-value=4.9e-10  Score=93.26  Aligned_cols=39  Identities=33%  Similarity=0.394  Sum_probs=35.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      .+|||+|||||++|+++|..+++.|++|+|||+....||
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG   40 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGG   40 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCC
Confidence            469999999999999999999999999999999877654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.04  E-value=9.1e-10  Score=81.88  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+++|||||++|+-+|..|+++|.+|+|+|+.+.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            4799999999999999999999999999998654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.04  E-value=2.7e-09  Score=79.33  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ...++|||||+.|+-.|..|++.|.+|+++++.+..
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            367999999999999999999999999999987543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.4e-09  Score=78.41  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+++|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            35799999999999999999999999999999754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=4.3e-09  Score=77.98  Aligned_cols=33  Identities=24%  Similarity=0.181  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..+++|||||+.|+-+|..|++.|.+|+|++++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            357999999999999999999999999999864

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.03  E-value=1.7e-09  Score=97.32  Aligned_cols=42  Identities=33%  Similarity=0.460  Sum_probs=37.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHH------cCCcEEEEcccCCCCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAK------RGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~------~g~~V~lvE~~~~~~~~   45 (413)
                      +.++|||||||||++|+++|+.|++      +|++|+||||+...+..
T Consensus        29 ~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            4457999999999999999999998      79999999999887543

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.02  E-value=1.3e-09  Score=98.74  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~   40 (413)
                      ++||+||||||.+|+.+|.+|++.+ ++|+|||+++
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            4699999999999999999999975 7999999985

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.01  E-value=3.4e-10  Score=102.07  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .||||||+|++|+.+|++|+++|++|+|||++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            689999999999999999999999999999974

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.97  E-value=9.3e-10  Score=89.31  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          152 PTKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      +.+++..+.+++++.|+++... .|+++..  .  .+.+.+.+..++ +.+|.+++++|..
T Consensus        66 ~~el~~~~~~q~~~~g~~i~~~-~V~~~~~--~--~~~~~v~~~~~~-~~~~~~~~a~g~~  120 (192)
T d1vdca1          66 GVELTDKFRKQSERFGTTIFTE-TVTKVDF--S--SKPFKLFTDSKA-ILADAVILAIGAV  120 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECC-CCCEEEC--S--SSSEEEECSSEE-EEEEEEEECCCEE
T ss_pred             chHHHHHHHHHHHhhcceeeee-eEEeccc--c--cCcEEeccccee-eeeeeEEEEeeee
Confidence            3567777888888899999754 6888887  6  456677666555 8999999999964

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=6.6e-10  Score=92.19  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ++|||+|||||++|+++|..|++.|++|+|||++..+
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~G   37 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELG   37 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence            4699999999999999999999999999999997644

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=2e-09  Score=87.14  Aligned_cols=113  Identities=14%  Similarity=0.203  Sum_probs=77.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcceecccCCccccchHHHHHHHHHHHHHhcCCe
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESSLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (413)
                      +..||+|||||++|+++|..|++.|++|+|||+.+..+....+..    +.                             
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~----i~-----------------------------   50 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTE----VE-----------------------------   50 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSB----CC-----------------------------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccch----hh-----------------------------
Confidence            468999999999999999999999999999998765431110000    00                             


Q ss_pred             eEeeeeeeeeCCCChHHHHHHHHHHHhCCCCccccCHHHHHHhcCCcccCCCCeEEEEecCCeeecHHHHHHHHHHHHHH
Q 015072           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLQKYSGRIEIPENWVGVTTELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                                                                .++.   ++           ....+..+...+...+.+
T Consensus        51 ------------------------------------------~~~~---~~-----------~~~~~~~~~~~~~~~~~~   74 (190)
T d1trba1          51 ------------------------------------------NWPG---DP-----------NDLTGPLLMERMHEHATK   74 (190)
T ss_dssp             ------------------------------------------CSTT---CC-----------SSCBHHHHHHHHHHHHHH
T ss_pred             ------------------------------------------hhhc---cc-----------cccchHHHHHHHHHHHHh
Confidence                                                      0000   00           001234566666777888


Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcCh
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~  213 (413)
                      .++++.. ..|+++..  .  +..+.+.+.++. +.++.+|+++|...
T Consensus        75 ~~~~~~~-~~V~~~~~--~--~~~~~v~~~~~~-~~~~~viva~G~~~  116 (190)
T d1trba1          75 FETEIIF-DHINKVDL--Q--NRPFRLNGDNGE-YTCDALIIATGASA  116 (190)
T ss_dssp             TTCEEEC-CCEEEEEC--S--SSSEEEEESSCE-EEEEEEEECCCEEE
T ss_pred             cCcEEec-ceeEEEec--C--CCcEEEEEeeee-Eeeeeeeeecceee
Confidence            8888875 46888888  6  456677766655 99999999999643

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.92  E-value=2e-09  Score=91.77  Aligned_cols=35  Identities=34%  Similarity=0.509  Sum_probs=32.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ||++|||||++|+++|.++++.|++|+|||++..+
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~G   36 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLG   36 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            89999999999999999999999999999997643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.92  E-value=3.7e-09  Score=95.70  Aligned_cols=36  Identities=28%  Similarity=0.521  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~~   41 (413)
                      ++||+||||||.+|+.+|.+|++.| ++|+|||++..
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999987 79999999963

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=5.6e-10  Score=97.24  Aligned_cols=47  Identities=26%  Similarity=0.473  Sum_probs=41.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCCcc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT   54 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~~~   54 (413)
                      +||+|||||++|+++|++|+++|++|+|+|+.+..||.+.+....|.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g~   48 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGI   48 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTE
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCCE
Confidence            79999999999999999999999999999999999887766544443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.2e-09  Score=98.56  Aligned_cols=48  Identities=31%  Similarity=0.387  Sum_probs=42.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES   52 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~~   52 (413)
                      .++.+|+|||||++||++|++|+++|++|+|+|+.+..||+..|....
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~   50 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG   50 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEET
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeC
Confidence            456789999999999999999999999999999999999887765433

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=1.8e-08  Score=84.37  Aligned_cols=37  Identities=32%  Similarity=0.478  Sum_probs=34.6

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      +|||+|||||++|+++|.++++.|++|+|||+.+..+
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            6999999999999999999999999999999987654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.77  E-value=5.8e-09  Score=92.90  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+||+||||+|.+|+.+|.+|++. ++|+|||++..
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            358999999999999999999986 99999999863

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=4.3e-09  Score=83.20  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=36.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ....+|+|||||++|+++|+.|+++|++|+|+|+.+..||
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG   80 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG   80 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCT
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCc
Confidence            3457999999999999999999999999999999988764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.75  E-value=3.1e-09  Score=92.02  Aligned_cols=44  Identities=41%  Similarity=0.467  Sum_probs=38.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~~~~~s~~~   51 (413)
                      .||+|||||++|+++|+.|+++|+ +|+|+|+.+..||+..+...
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~   45 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNF   45 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEecc
Confidence            389999999999999999999996 79999999988887665433

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=2.4e-09  Score=89.74  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=36.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      |.++|||+|||||++|+++|.+|++.|++|+|||+.+..||
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG   42 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG   42 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcce
Confidence            55689999999999999999999999999999998766543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.70  E-value=4.6e-09  Score=92.67  Aligned_cols=44  Identities=30%  Similarity=0.347  Sum_probs=39.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~~~   51 (413)
                      .+|+|||||++|+++|++|+++|++|+|+|+++..||+..+...
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~   45 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQ   45 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEecc
Confidence            46999999999999999999999999999999998887766443

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.68  E-value=5.5e-09  Score=91.40  Aligned_cols=43  Identities=26%  Similarity=0.478  Sum_probs=38.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s~   49 (413)
                      +.+|+|||||++|+++|+.|+++|++|+|+|+.+..||.+.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~   44 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA   44 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEE
Confidence            4679999999999999999999999999999999988766553

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.67  E-value=9.1e-09  Score=85.73  Aligned_cols=38  Identities=45%  Similarity=0.585  Sum_probs=35.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      ++|||+|||||++|+++|.+|+++|++|+|||+....+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            57999999999999999999999999999999976554

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.62  E-value=1.3e-08  Score=87.59  Aligned_cols=41  Identities=37%  Similarity=0.450  Sum_probs=36.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRG   46 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~V~lvE~~~~~~~~~   46 (413)
                      .++||+|||||++|+++|++|+++ |++|+|+|+.+..|+..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~   73 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   73 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCce
Confidence            468999999999999999999875 99999999988776443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=2.3e-07  Score=74.20  Aligned_cols=33  Identities=36%  Similarity=0.608  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .|||+|||||++|+++|..+++.|++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            389999999999999999999999999999974

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.59  E-value=1.3e-08  Score=84.94  Aligned_cols=39  Identities=36%  Similarity=0.599  Sum_probs=35.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      .+|||+|||||++|+++|..|+++|++|+|||+.+..|+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG   43 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGG   43 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence            469999999999999999999999999999999876543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.58  E-value=1.5e-08  Score=91.19  Aligned_cols=39  Identities=26%  Similarity=0.441  Sum_probs=35.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      |+.+|||||||+|++|+++|.+|+++|++|+|||++...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            456899999999999999999999999999999997543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.58  E-value=1.2e-07  Score=76.80  Aligned_cols=49  Identities=27%  Similarity=0.219  Sum_probs=38.0

Q ss_pred             HHHHHcCCeEecCceEEEEEeeeccCCCcEEEEe-CCcc--EEEeCeEEEcCCcCh
Q 015072          161 TLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVT-SSGE--EFWGKKCVVTAGAWV  213 (413)
Q Consensus       161 ~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~vV~A~G~~~  213 (413)
                      +.+.+.|++++++++|++|+.  +  ++.+.++. .+|+  ++.+|.+|+|+|.+.
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~--~--~~~v~~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQP--K--EHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEET--T--TTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHCCcEEEEeeceeeEee--c--cccceeeecccccccccccceeeEeeccee
Confidence            445678999999999999988  6  45666653 4444  578999999999754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8e-09  Score=84.99  Aligned_cols=44  Identities=16%  Similarity=0.246  Sum_probs=36.9

Q ss_pred             HHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          163 AIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       163 ~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      +++.|++++++++|++|+.  +  ..  +|++++|+++.+|.+|+|+|.-
T Consensus        93 ~~~~gI~~~~g~~V~~id~--~--~~--~V~l~dG~~i~~d~lViAtG~~  136 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDV--R--DN--MVKLNDGSQITYEKCLIATGGT  136 (213)
T ss_dssp             STTCEEEEEETCCEEEEEG--G--GT--EEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHCCeEEEeCCEEEEeec--c--Cc--eeeeccceeeccceEEEeeeee
Confidence            3567899999999999987  5  23  5778899999999999999964

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.52  E-value=2.7e-08  Score=82.30  Aligned_cols=39  Identities=23%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ...++|++|||||++|+++|..+++.|++|+|||++..+
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~G   40 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALG   40 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTT
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            345799999999999999999999999999999997654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.49  E-value=9.4e-08  Score=75.21  Aligned_cols=52  Identities=21%  Similarity=0.131  Sum_probs=37.5

Q ss_pred             HHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcChhhhhhhh
Q 015072          162 LAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAWVGKLVKKI  220 (413)
Q Consensus       162 ~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~~~~l~~~~  220 (413)
                      ...+.++++++++.|+.+..  .   .. .+ +.+++++.+|.+|+|+|.....+....
T Consensus        61 ~~~~~~v~~~~~~~v~~i~~--~---~~-~~-~~~~~~i~~D~li~a~G~~~~~~~~~~  112 (167)
T d1xhca1          61 WYRKRGIEIRLAEEAKLIDR--G---RK-VV-ITEKGEVPYDTLVLATGAPNVDLARRS  112 (167)
T ss_dssp             HHHHHTEEEECSCCEEEEET--T---TT-EE-EESSCEEECSEEEECCCEECCHHHHHT
T ss_pred             HHHhccceeeeecccccccc--c---cc-cc-cccccccccceeEEEEEecCCchhhhc
Confidence            34556899999999999877  4   22 23 344556999999999998766665544

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.49  E-value=1.5e-07  Score=78.46  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC---CcEEEEcccCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG---QKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g---~~V~lvE~~~~~   42 (413)
                      ++|+|||||++|+++|.++++.|   ++|+|+|+...+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~G   39 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIG   39 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCC
Confidence            57999999999999999998865   579999997654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.47  E-value=4.7e-08  Score=80.98  Aligned_cols=37  Identities=35%  Similarity=0.401  Sum_probs=34.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~   43 (413)
                      +||++|||||++|+++|..+++.|++|+|||+...+|
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG   39 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG   39 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence            5999999999999999999999999999999987653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.8e-08  Score=80.79  Aligned_cols=36  Identities=25%  Similarity=0.466  Sum_probs=33.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      +||++|||||++|+++|.++++.|++|+|||++..+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~G   38 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLG   38 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence            699999999999999999999999999999997654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.45  E-value=1.1e-07  Score=79.27  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=36.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      ....+|+|||||++|+++|..|+++|++|+|+|+.+..|+
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG   86 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCC
Confidence            4568999999999999999999999999999999887653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.44  E-value=9.6e-08  Score=77.28  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~~   43 (413)
                      ..+|+|||||++|+++|+.|+++|+ +|+|+|+.+..+
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            4679999999999999999999998 599999987764

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.43  E-value=1.8e-07  Score=65.43  Aligned_cols=93  Identities=8%  Similarity=-0.206  Sum_probs=57.6

Q ss_pred             eeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCCcCCCCCCCCCCCcchHHHHHHH
Q 015072          227 IQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELI  306 (413)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  306 (413)
                      ++|.|||++.++.+... +.+.. . .+  ........|++|..+  +++++++......+...    ..+..++|.+.+
T Consensus         1 i~PvrGQil~v~~P~~~-~~~~~-~-~~--~~~~~~~~yivpr~~--~~viG~T~e~~~~d~~~----~~~~~~~i~~~a   69 (93)
T d1kifa2           1 LQPGRGQIIKVDAPWLK-NFIIT-H-DL--ERGIYNSPYIIPGLQ--AVTLGGTFQVGNWNEIN----NIQDHNTIWEGC   69 (93)
T ss_dssp             CEEEEEEEEEEECTTCC-SEEEE-E-CT--TTCTTCSCEEEECSS--SEEEECCCEETCCCCSC----CHHHHHHHHHHH
T ss_pred             CccccceEEEEcCCCCc-cceee-c-cc--cccCCCceEEEECCC--CEEEEEEeecCCCCCCC----CHHHHHHHHHHH
Confidence            57999999998854211 11100 0 00  011234579999853  65554442221222221    122889999999


Q ss_pred             HhhcCCCCCCCCCceeeeeeeeccC
Q 015072          307 QGRFAGRVDSSGPAATQLCMYSMTP  331 (413)
Q Consensus       307 ~~~~p~~~~~~~~~~~~~g~~~~t~  331 (413)
                      .+++|.+.+. .++..|+|+||++|
T Consensus        70 ~~~~P~l~~~-~i~~~~~GlRP~rP   93 (93)
T d1kifa2          70 CRLEPTLKDA-KIVGEYTGFRPVRP   93 (93)
T ss_dssp             HHHSGGGGGC-EEEEEEEEEEEECS
T ss_pred             HHHHhhhcCC-CeeeEEEeecCCCC
Confidence            9999999974 77889999999886

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.41  E-value=3.8e-07  Score=62.91  Aligned_cols=87  Identities=9%  Similarity=-0.077  Sum_probs=57.1

Q ss_pred             eeEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCCC-cCCCCCCCCCCCcchHHHHHH
Q 015072          227 IQAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGY-LCDPDRRPWGPGPLLDSLKEL  305 (413)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  305 (413)
                      +.|+||+++.++.+....        ......   ..+|++|..+  |.+.+|++.+. ..+...    ..+..+.|.+.
T Consensus         1 l~PvKGq~l~v~~~~~~~--------~~~i~~---~~~yiip~~~--g~~~iG~T~e~~~~d~~~----~~~~~~~l~~~   63 (88)
T d1ryia2           1 FLPVKGECLSVWNDDIPL--------TKTLYH---DHCYIVPRKS--GRLVVGATMKPGDWSETP----DLGGLESVMKK   63 (88)
T ss_dssp             CEEEEEEEEEEECCSSCC--------CSEEEE---TTEEEEECTT--SEEEEECCCEETCCCCSC----CHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCcc--------CCEEeC---CCEEEEECCC--CCEEEccEEEECCCCCCC----CHHHHHHHHHH
Confidence            579999999988543211        112222   2378998854  66656553322 122221    12288999999


Q ss_pred             HHhhcCCCCCCCCCceeeeeeeeccC
Q 015072          306 IQGRFAGRVDSSGPAATQLCMYSMTP  331 (413)
Q Consensus       306 ~~~~~p~~~~~~~~~~~~~g~~~~t~  331 (413)
                      +.+++|.+.+. .+++.|+|+||.|.
T Consensus        64 a~~~~P~l~~~-~v~~~waGlRP~t~   88 (88)
T d1ryia2          64 AKTMLPAIQNM-KVDRFWAGLRPGTK   88 (88)
T ss_dssp             HHHHCGGGGGS-EEEEEEEEEEEECS
T ss_pred             HHHHCCCcCCC-cEeEEEEeeCCCCC
Confidence            99999999874 67889999999873

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=7.5e-08  Score=80.58  Aligned_cols=38  Identities=24%  Similarity=0.201  Sum_probs=34.2

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCCCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g-------~~V~lvE~~~~~~~   44 (413)
                      .++|+|||||++||++|++|+++|       ++|+|+|+.+..||
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG   46 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG   46 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCC
Confidence            368999999999999999999987       48999999988764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.35  E-value=4.2e-07  Score=72.52  Aligned_cols=41  Identities=17%  Similarity=0.030  Sum_probs=33.9

Q ss_pred             cCCeEecCceEEEEEeeeccCCCcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          166 NGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       166 ~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      .+++++++++|+++..  +  .  ..+.+++|+++.+|.+|+|+|..
T Consensus        68 ~~i~~~~~~~v~~i~~--~--~--~~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDP--Q--A--HTVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             TTCEEEETCCEEEEET--T--T--TEEEETTSCEEECSEEEECCCEE
T ss_pred             CCeEEEEecccccccc--c--c--ceeEecCCcEeeeeeEEEEEEEE
Confidence            5788999999999887  5  2  24567889999999999999964

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.34  E-value=1.1e-07  Score=84.65  Aligned_cols=38  Identities=32%  Similarity=0.363  Sum_probs=33.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHH-----HcCCcEEEEcccCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLA-----KRGQKTLLLEQFDFL   42 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~-----~~g~~V~lvE~~~~~   42 (413)
                      +..|||+|||||++|+++|..|+     ++|++|+|+|+.+..
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            34599999999999999999997     469999999998655

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=2.3e-07  Score=80.93  Aligned_cols=41  Identities=39%  Similarity=0.395  Sum_probs=36.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRG   46 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~~~   46 (413)
                      .++||+|||||++|+++|+.|+++  |++|+|+|+.+..|+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   91 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS   91 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCccee
Confidence            368999999999999999999975  99999999998876543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=2.8e-07  Score=76.55  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHH   44 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~--g~~V~lvE~~~~~~~   44 (413)
                      .+|+|||||++|+++|..|+++  |++|+|+|+.+..||
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            4799999999999999999886  779999999987753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.24  E-value=6.3e-07  Score=75.94  Aligned_cols=40  Identities=25%  Similarity=0.532  Sum_probs=36.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~   44 (413)
                      .++||++|||||++|+.+|..|++.|.+|+|||+.+..||
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG   79 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG   79 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccc
Confidence            3579999999999999999999999999999999877654

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.17  E-value=9.4e-07  Score=73.57  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~   42 (413)
                      +.||++|||||++|+++|.++++.|. +|+|+|+....
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~   39 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH   39 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeeccc
Confidence            57999999999999999999999876 68899886543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.15  E-value=6.6e-07  Score=74.78  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~~   42 (413)
                      ++||++|||||++|+++|..+++.|. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            57999999999999999999999885 69999987654

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.02  E-value=4.6e-06  Score=58.14  Aligned_cols=87  Identities=7%  Similarity=-0.105  Sum_probs=54.7

Q ss_pred             eEEEEEEEEEEecCCCccccccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCCC-CcCCCCCCCCCCCcchHHHHHHH
Q 015072          228 QAVETSVCYWRIKEGDEADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRG-YLCDPDRRPWGPGPLLDSLKELI  306 (413)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~  306 (413)
                      +|.|||++.++.+...         .+..........|++|..+  |.+++|++.+ ...++..    ..+..++|++.+
T Consensus         2 ~PvRGQ~~~v~~p~~~---------~~~~~~~~~~~~Yiipr~~--g~vviG~T~e~~~~d~~~----~~~~~~~il~~a   66 (95)
T d1c0pa2           2 EPIRGQTVLVKSPCKR---------CTMDSSDPASPAYIIPRPG--GEVICGGTYGVGDWDLSV----NPETVQRILKHC   66 (95)
T ss_dssp             EEEEEEEEEEECCCCC---------CEEECSCTTCCEEEEEETT--TEEEEECCCEETCCCCSC----CHHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCc---------ccEEEecCCCeEEEEECCC--CEEEEEEEEEECCCcCCC----CHHHHHHHHHHH
Confidence            6899999988854311         1222222344589999863  6565555322 1222221    122789999999


Q ss_pred             HhhcCCCCCC-----CCCceeeeeeeec
Q 015072          307 QGRFAGRVDS-----SGPAATQLCMYSM  329 (413)
Q Consensus       307 ~~~~p~~~~~-----~~~~~~~~g~~~~  329 (413)
                      .+++|.+.+.     ..++..|+|+||.
T Consensus        67 ~~~~P~L~~~~~~~~~~v~~~~~GlRP~   94 (95)
T d1c0pa2          67 LRLDPTISSDGTIEGIEVLRHNVGLRPA   94 (95)
T ss_dssp             HHHCGGGSSSSSGGGCEEEEEEEEEEEE
T ss_pred             HHhCccccccccccCccEEEeEEEeCCC
Confidence            9999998632     2456789999995

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.95  E-value=2.8e-05  Score=59.71  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             ccEEEE--CCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVV--GAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvII--GgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..++||  |||..|+.+|-.|+++|.+|+||++.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            345555  9999999999999999999999998654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.84  E-value=1.6e-05  Score=63.04  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .-+|+|||||.+|+.+|..|++.|.+|+|++..+.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            35799999999999999999999999888887654

>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.82  E-value=3.1e-05  Score=54.66  Aligned_cols=98  Identities=24%  Similarity=0.359  Sum_probs=67.4

Q ss_pred             eeEEEEEEEEEEecCCCccccccCCCCceEE-ecCCCeeEecCCCCCCCeEEEEe-CCCCcCCCCCCCC--CCC-cchHH
Q 015072          227 IQAVETSVCYWRIKEGDEADYAVGGDFPSFA-SYGDPHVYGTPSLEYPGLIKIAL-HRGYLCDPDRRPW--GPG-PLLDS  301 (413)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~-~~~~~~~~~~~~~--~~~-~~~~~  301 (413)
                      |++.|..+.+++..+..  ... ...+|.+. ..++..+|+.|..+..| ++++. +.+...+|+..+.  ... +.++.
T Consensus         1 L~v~Rq~~~wf~~~~~~--~~~-~~~fP~fi~~~~~~~~YGfP~~~~~g-~Ki~~~~~g~~~dPd~~dr~~~~~~~~~~~   76 (104)
T d2gf3a2           1 LQPYRQVVGFFESDESK--YSN-DIDFPGFMVEVPNGIYYGFPSFGGCG-LKLGYHTFGQKIDPDTINREFGVYPEDESN   76 (104)
T ss_dssp             CEEEEEEEEEECCCHHH--HBG-GGTCCEEEEEETTEEEEEECBSTTCC-EEEEESSCCEECCTTTCCCCTTSSHHHHHH
T ss_pred             CeEEEEEEEEecCCCcc--ccc-cCCCCEEEEECCCCeEEecCCCCCCc-eEEEEecCCCccCccccccCCCCCHHHHHH
Confidence            35667777666633221  122 24589886 34566899999998888 45555 5566777776543  233 36889


Q ss_pred             HHHHHHhhcCCCCCCCCCceeeeeeeecc
Q 015072          302 LKELIQGRFAGRVDSSGPAATQLCMYSMT  330 (413)
Q Consensus       302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t  330 (413)
                      +.+.+.++||++..  .+....+|++.+|
T Consensus        77 l~~~v~~~~Pgl~~--~p~~~~~C~YT~T  103 (104)
T d2gf3a2          77 LRAFLEEYMPGANG--ELKRGAVCMYTKT  103 (104)
T ss_dssp             HHHHHHHHCGGGCS--CEEEEEEEEEEEC
T ss_pred             HHHHHHHHCCCCCC--CeeeccEeeEccc
Confidence            99999999999974  4778889998876

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=0.00012  Score=56.45  Aligned_cols=46  Identities=20%  Similarity=0.284  Sum_probs=34.6

Q ss_pred             HHHHHHHcCCeEecCceEEEEEeeeccCCCcEEEEeCCcc-EEEeCeEEEcCC
Q 015072          159 FQTLAIKNGAVLRDNTEVKTVLKVKDDVRGGVTVVTSSGE-EFWGKKCVVTAG  210 (413)
Q Consensus       159 l~~~~~~~gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~vV~A~G  210 (413)
                      +...++..|+++..++.|.++..  +    ++.+...+.+ ++.||.||+|+|
T Consensus       114 ~~~~~~~~gv~~~~~~~v~~i~~--~----gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         114 HRTTLLSRGVKMIPGVSYQKIDD--D----GLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHTTCEEECSCEEEEEET--T----EEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHhhCCeEEEeeeEEEEEcC--C----CCEEecCCeEEEEECCEEEECCC
Confidence            34567778999999999999866  4    3444443333 689999999998

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=4.6e-05  Score=52.59  Aligned_cols=35  Identities=20%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ...|+|+|.|.+|+++|..|.++|.+|+++|....
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            45799999999999999999999999999998654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.53  E-value=3.4e-05  Score=60.77  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g--~~V~lvE~~~~   41 (413)
                      .+|+|||||.+|+.+|..|++.+  .+|+|+|+.+.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            46999999999999999999987  48999998764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.37  E-value=5.7e-05  Score=59.41  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..|+|||+|.+|..+|.+|+++|++|+|+|+...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            5699999999999999999999999999998753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.29  E-value=9.7e-05  Score=58.24  Aligned_cols=33  Identities=30%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..++|||+|..|+.+|..|+++|++|.++++.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999999863

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00012  Score=56.65  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +|+|||+|..|...|..|++.|++|+++++...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            499999999999999999999999999998654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.005  Score=44.56  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|-+++-.|..|++...+|+|+-+.+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            4689999999999999999999999999997754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00022  Score=56.47  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|..|...|..++++|++|+++|.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            579999999999999999999999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.05  E-value=0.00024  Score=52.48  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            499999999999999999999999999998753

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.95  E-value=0.00027  Score=55.58  Aligned_cols=33  Identities=39%  Similarity=0.598  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||+|.+|...|..++.+|++|+++|.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.84  E-value=0.00059  Score=51.05  Aligned_cols=37  Identities=27%  Similarity=0.529  Sum_probs=32.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            4 SGENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         4 ~~~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      |.++.+|.|||+|-.|.++|+.|+.+|.  ++.|+|...
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4456789999999999999999999984  899999754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.84  E-value=0.00041  Score=55.40  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|.|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            39999999999999999999999999999764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0065  Score=43.91  Aligned_cols=35  Identities=34%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|+|||+|-+.+-.|..|++...+|+|+-+.+.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            46899999999999999999999889999987643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.73  E-value=0.00057  Score=50.49  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +++|||.|-.|..+|..|.+.|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            589999999999999999999999999998753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.73  E-value=0.00094  Score=50.46  Aligned_cols=38  Identities=21%  Similarity=0.424  Sum_probs=32.7

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            3 FSGENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         3 ~~~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ++.++.+|.|||+|-.|.++|+.|+..++ +++|+|..+
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            35567899999999999999999999886 899998653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.71  E-value=0.00042  Score=54.52  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|.-|.++|..|++.|++|+|+.+++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            3579999999999999999999999999998753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.66  E-value=0.0013  Score=49.66  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             CCccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ....|.||| .|..|.+.|..|.++|++|.++|+..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            346899999 69999999999999999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.64  E-value=0.00093  Score=51.32  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||.|..|.+.|..|+++|++|+++|+.+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            49999999999999999999999999999863

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.55  E-value=0.0014  Score=49.57  Aligned_cols=34  Identities=21%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...+|+|||+|.+|+.++..+.+.|.+|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            3578999999999999999999999999999975

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.47  E-value=0.0012  Score=51.43  Aligned_cols=30  Identities=30%  Similarity=0.477  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      +|.|||+|..|.++|..|++.|++|.|+.+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            499999999999999999999999999965

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.46  E-value=0.0018  Score=49.70  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..+|+|||+|.+|+.+|.-+.+.|..|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            4689999999999999999999999999999764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.45  E-value=0.0016  Score=48.70  Aligned_cols=36  Identities=28%  Similarity=0.583  Sum_probs=31.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      ....+|.|||+|-.|.++|+.|+.+++  ++.|+|..+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            345689999999999999999999876  799999653

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.15  E-value=0.0027  Score=56.97  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHcCCeEecCceEEEEEeeeccCC-CcEEEEeCCccEEEeCeEEEcCCcC
Q 015072          153 TKAVSMFQTLAIKNGAVLRDNTEVKTVLKVKDDVR-GGVTVVTSSGEEFWGKKCVVTAGAW  212 (413)
Q Consensus       153 ~~~~~~l~~~~~~~gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~~i~ad~vV~A~G~~  212 (413)
                      .++.+.+.+.+.-.|..+.+++.|.+|..  +..+ ....|..++|+++++++||......
T Consensus       376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~--d~e~~~~~~v~~~~g~~i~~k~vI~~psy~  434 (491)
T d1vg0a1         376 GELPQCFCRMCAVFGGIYCLRHSVQCLVV--DKESRKCKAVIDQFGQRIISKHFIIEDSYL  434 (491)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEE--ETTTCCEEEEEETTSCEEECSEEEEEGGGB
T ss_pred             chHHHHHHHHHHhcCcEEEcCCccceEEE--ecCCCeEEEEEccCCcEEecCeEEECHHhC
Confidence            47888898998889999999999999988  5323 3445677889999999998776543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.82  E-value=0.0068  Score=45.65  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      ++.+|.|||+|-.|.++|+.|..+|+  ++.|+|...
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            45799999999999999999999987  899999753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.80  E-value=0.0032  Score=49.68  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=29.0

Q ss_pred             cEEEE-CCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVV-GAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvII-GgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|+|| |+|-.|..+|..|++.|++|+|..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            38999 679999999999999999999998763

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.79  E-value=0.0051  Score=46.19  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      -+|+|||||-+|+=+|..|.+.|. +|+++.+.+.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            479999999999999999999986 5889877543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.77  E-value=0.0052  Score=43.51  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=30.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ....|+|||+|-.|..-|..|.+.|.+|++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3568999999999999999999999999999754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.71  E-value=0.0061  Score=45.14  Aligned_cols=32  Identities=31%  Similarity=0.668  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|.|||+|-.|.++|+.|+..+.  ++.|+|..+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            49999999999999999999874  899999764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.70  E-value=0.0046  Score=45.74  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|.|||+|-.|.++|+.|+.+|.  ++.|+|..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            59999999999999999998875  799999653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0035  Score=47.08  Aligned_cols=34  Identities=24%  Similarity=0.445  Sum_probs=30.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +...|+|||||..|+.-|..|.+.|.+|+||...
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4578999999999999999999999999999654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.61  E-value=0.0061  Score=47.13  Aligned_cols=33  Identities=36%  Similarity=0.588  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|-|||-|..|...|.+|.++|++|.++|+.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            459999999999999999999999999999753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.57  E-value=0.0047  Score=46.96  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||-|..|...|..|+++|++|.++|+.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            49999999999999999999999999999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.50  E-value=0.0076  Score=44.53  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      .+|.|||+|-.|.++|+.|+.++. +++++|..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            469999999999999999999876 899998654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.0086  Score=45.03  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=30.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      ++.+|.|||+|-.|.++|+.|..+|+  ++.|+|...
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            34679999999999999999999976  799999653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.49  E-value=0.0091  Score=44.08  Aligned_cols=33  Identities=36%  Similarity=0.692  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      .+|.|||+|-.|.++|+.|..+++  ++.|+|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            369999999999999999999976  899999654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.45  E-value=0.0077  Score=44.67  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      .+|.|||+|..|.++|+.|..+|.  ++.|+|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            469999999999999999999875  89999865

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.44  E-value=0.0048  Score=48.64  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|+|||.|..|+.+|..|+ +|++|+.+|-+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            4999999999999999886 599999999764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.42  E-value=0.0094  Score=45.94  Aligned_cols=33  Identities=15%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..|.|||-|.+|...|..|.++|++|.++|+.+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            469999999999999999999999999999864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.38  E-value=0.0082  Score=44.32  Aligned_cols=33  Identities=33%  Similarity=0.539  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      .+|.|||+|-.|.++|+.|..+|+  +++|+|..+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            469999999999999999999987  899999653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.34  E-value=0.0074  Score=44.48  Aligned_cols=32  Identities=31%  Similarity=0.524  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|.|||+|-.|.++|+.|+.++.  ++.|+|..+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            59999999999999999999875  899999653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.32  E-value=0.0077  Score=45.75  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|.|||-|..|...|.+|.++|++|.++|+..
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            49999999999999999999999999999863

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.28  E-value=0.0082  Score=44.44  Aligned_cols=31  Identities=35%  Similarity=0.495  Sum_probs=27.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEccc
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~--~V~lvE~~   39 (413)
                      +|.|||| |..|.++|+.|+.++.  ++.|+|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            4999996 9999999999999985  89999875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.27  E-value=0.012  Score=43.80  Aligned_cols=34  Identities=18%  Similarity=0.486  Sum_probs=29.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      +.+|.|||+|-.|.++|+.|.+++. ++.|+|..+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4679999999999999999988875 899999754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.17  E-value=0.01  Score=44.40  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +|.|||.|.+|...|..|+++|++|+++++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            49999999999999999999999999998654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.05  E-value=0.0085  Score=41.85  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..+|+|||+|.+|+-+|..|++.+.+|+++-+.
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            468999999999999999999988887777553

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.87  E-value=0.011  Score=43.76  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=28.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      +|+|||| |..|.++|+.|+.+|.  ++.|+|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            5899996 9999999999999886  799998653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.02  Score=40.00  Aligned_cols=36  Identities=17%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..++|.|||||--|..+|....+.|++|.++|.++.
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346799999999999999999999999999998654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.028  Score=39.90  Aligned_cols=42  Identities=19%  Similarity=0.295  Sum_probs=35.3

Q ss_pred             CCCCCCCccEEEECCC-----------HHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            1 MEFSGENFDVIVVGAG-----------IMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG-----------~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      |.......+|+|||+|           .++..++..|++.|++++++..++..
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            6555566789999998           47899999999999999999987653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.63  E-value=0.019  Score=43.87  Aligned_cols=32  Identities=34%  Similarity=0.480  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~--~V~lvE~~~   40 (413)
                      .|.|||.|..|.+.|+.|.+.|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            49999999999999999999986  677788764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.021  Score=43.55  Aligned_cols=35  Identities=11%  Similarity=0.170  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +..+|+|+|+|=++.++++.|.+.|.+|+|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            34689999999999999999999999999998753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.022  Score=42.55  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .++|+|.|-.|..++..|.++|.+|++||.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            59999999999999999999999999999764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.26  E-value=0.019  Score=43.72  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|.+|+++|..+
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            469999999999999998888899999999764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.025  Score=43.19  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|. +|+++|..+
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            469999999999999999988898 799998754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.92  E-value=0.028  Score=40.55  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+|+|||||-+.+-.|.+|++...+|+||-+.+..
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            578999999999999999999998999999887553

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.87  E-value=0.024  Score=42.30  Aligned_cols=31  Identities=16%  Similarity=0.264  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ++.|||.|-.|.+.|..|.+.|++|++.++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            4999999999999999999999999999875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.035  Score=43.73  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=30.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .+|+|+|| |..|..++.+|.++|++|+++.|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            45999995 99999999999999999999987643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.67  E-value=0.038  Score=40.50  Aligned_cols=30  Identities=37%  Similarity=0.659  Sum_probs=27.0

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCC--cEEEEcc
Q 015072            9 DVIVVG-AGIMGSSAAYQLAKRGQ--KTLLLEQ   38 (413)
Q Consensus         9 dvvIIG-gG~aG~~~A~~L~~~g~--~V~lvE~   38 (413)
                      +|.||| +|-.|.++|+.|..++.  ++.|+|-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            599999 69999999999999986  7999984

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.66  E-value=0.03  Score=42.42  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=29.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .-.|+|+|+|..|+.++..+...|.+|+++++.+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            3469999999999999988888899999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.64  E-value=0.038  Score=37.41  Aligned_cols=37  Identities=19%  Similarity=0.065  Sum_probs=32.3

Q ss_pred             CCCCCccEEEECCCHHHHHH-HHHHHHcCCcEEEEccc
Q 015072            3 FSGENFDVIVVGAGIMGSSA-AYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         3 ~~~~~~dvvIIGgG~aG~~~-A~~L~~~g~~V~lvE~~   39 (413)
                      +|.+...+-+||-|=+|+++ |..|.++|++|+--|..
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            45566789999999999887 99999999999999875

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.63  E-value=0.034  Score=46.68  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             CCccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++.+|+|+|| |..|..++.+|.++|++|+++.|..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            3466999997 9999999999999999999998753

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.63  E-value=0.031  Score=41.66  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~   40 (413)
                      +|.|||+|-.|.+.|..|.+.| ++|.++++++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            4999999999999999998887 8999998753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.61  E-value=0.04  Score=41.77  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      ++.+|+|+|+|=++.++++.|.+.|. +|.|+.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            45689999999999999999999996 89999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.54  E-value=0.037  Score=42.01  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .-.|+|+|+|..|+.++..+...|.+|++++..+
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            3469999999999998888777899999998754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.068  Score=37.36  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=31.9

Q ss_pred             CccEEEECCC-----------HHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAG-----------IMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG-----------~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ..+|+|||+|           .++..++..|.+.|++++++..++..
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            4679999999           68999999999999999999988754

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.031  Score=45.53  Aligned_cols=35  Identities=31%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            4689999999999999999999997 8999998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.042  Score=35.32  Aligned_cols=33  Identities=18%  Similarity=0.086  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .|.|||||--|...+....+.|++|.+++....
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            599999999999999999999999999997643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.08  E-value=0.049  Score=45.39  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +.+|+|+|| |..|..++..|.++|++|.++.+...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            567999998 99999999999999999999998643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.00  E-value=0.051  Score=46.94  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=32.1

Q ss_pred             CCCCccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            4 SGENFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         4 ~~~~~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |.++++|+|.| .|..|..++.+|.++|++|+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            34567899998 79999999999999999999998654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.06  Score=39.57  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=26.3

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHc-C--CcEEEEcccC
Q 015072            9 DVIVVG-AGIMGSSAAYQLAKR-G--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIG-gG~aG~~~A~~L~~~-g--~~V~lvE~~~   40 (413)
                      +|.||| +|-.|.++|+.|+.+ +  .++.|+|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            599999 599999999998653 4  5899999653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.53  E-value=0.049  Score=41.88  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|. +|+++|.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            468999999999999998888897 799998753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.53  E-value=0.075  Score=39.74  Aligned_cols=34  Identities=38%  Similarity=0.560  Sum_probs=30.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      ....|+|||+|-+|..+|..|..+|. +++|+-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            45679999999999999999999997 58888765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.04  E-value=0.071  Score=40.62  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=28.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      .-.|+|+|+|..|+.++..++..|. +|+++|..
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            3579999999999999988888896 79999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.94  E-value=0.0032  Score=51.23  Aligned_cols=36  Identities=8%  Similarity=0.141  Sum_probs=32.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~   42 (413)
                      ...++|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            357999999999999999999999999999998765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.085  Score=39.84  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|.++++++...
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            469999999999999888888899998888653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.80  E-value=0.049  Score=44.99  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=30.0

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|+|.|| |..|..++.+|.++|++|+.+++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            45999998 9999999999999999999998754

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.52  E-value=0.076  Score=40.31  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ....|+|+|+|-++-++++.|.+.+.+|+|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            34679999999999999999999888999998863

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.13  Score=39.33  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=29.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      ...|+|||+|-+|.++++.|.+.|. +++|+.+..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            4689999999999999999999987 788888753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.99  E-value=0.13  Score=39.22  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g-~~V~lvE~~~   40 (413)
                      -.|+|+|+|..|+.+...++..| .+|+++|..+
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            35999999999999999999998 4899999764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.92  E-value=0.17  Score=38.98  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             CCccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +...++|.| +|-.|..+|..|+++|.+|++++++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            456788988 58999999999999999999998863

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.80  E-value=0.11  Score=40.37  Aligned_cols=34  Identities=26%  Similarity=0.226  Sum_probs=27.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      .-.|+|+|+|..|+.++..++..|. +|+++|..+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            3479999999999999988887776 788887653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.78  E-value=0.098  Score=39.90  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=28.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +..+|+|||+|-++-++++.|.+.| +|.|+.|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            3568999999999999999998777 89999775

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.73  E-value=0.14  Score=38.95  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|. +|++.|..+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            469999999999999999999998 566777654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.68  E-value=0.1  Score=39.31  Aligned_cols=32  Identities=19%  Similarity=0.115  Sum_probs=28.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      -.|+|+|+|..|+.++..+...|.+|++++..
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            46899999999999988888889999999864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.17  Score=40.74  Aligned_cols=40  Identities=25%  Similarity=0.379  Sum_probs=31.4

Q ss_pred             CCCCCCCccEEEECCCH-HHHHHHHHHHHcCCcEEEEcccC
Q 015072            1 MEFSGENFDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |++...-..++|.||+- .|..+|..|++.|.+|++++++.
T Consensus         1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            65444446678878765 49999999999999999998753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.20  E-value=0.11  Score=41.37  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=29.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ..+|+|||+|.+|+=+|+.|++.+.+++++=+.
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            468999999999999999999999988887654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.44  E-value=0.2  Score=37.20  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      -..++|||-|-.|..+|..|+..|.+|+++|..+.
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            35799999999999999999999999999998753

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.43  E-value=0.22  Score=42.49  Aligned_cols=34  Identities=26%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             CCccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ++..|+|+|| |..|..++..|.++|++|.++-|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            3567999996 999999999999999999999764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.27  E-value=0.1  Score=38.75  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             CCccEEEECC-CHHHHHHHHHHHHcC
Q 015072            6 ENFDVIVVGA-GIMGSSAAYQLAKRG   30 (413)
Q Consensus         6 ~~~dvvIIGg-G~aG~~~A~~L~~~g   30 (413)
                      +.++|.|||| |..|.++|+.|+..+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            4568999997 999999999999864

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.07  E-value=0.063  Score=38.40  Aligned_cols=37  Identities=16%  Similarity=0.127  Sum_probs=27.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc-CCc-EEEEcccCCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR-GQK-TLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~-g~~-V~lvE~~~~~   42 (413)
                      +++.|+|+|||-+|..++.++.+. +++ |..+|-++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            357899999999999998877543 565 4556765543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.95  E-value=0.19  Score=38.05  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=25.9

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEE-Ecc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLL-LEQ   38 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~l-vE~   38 (413)
                      .-.|+|+|+|..|+.++..+...|.++++ .|.
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            35699999999999999888888886654 454

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.89  E-value=0.18  Score=42.80  Aligned_cols=31  Identities=32%  Similarity=0.688  Sum_probs=27.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +|+|+|| |..|..++.+|.++|++|+++++-
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            3899975 899999999999999999999864

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.83  E-value=0.22  Score=41.29  Aligned_cols=39  Identities=18%  Similarity=0.161  Sum_probs=31.6

Q ss_pred             CCCCCCCccEEEECCC---HHHHHHHHHHHHcCCcEEEEccc
Q 015072            1 MEFSGENFDVIVVGAG---IMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 M~~~~~~~dvvIIGgG---~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      |++..+...++|.||+   =.|..+|..|+++|.+|++.++.
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            5544455679999986   48999999999999999998754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.76  E-value=0.22  Score=36.84  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      -..++|+|=|-.|-.+|..|+..|.+|+|+|.++.
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            46799999999999999999999999999999875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=88.49  E-value=0.29  Score=38.36  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=31.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ..+..++|.|+|.+|+.+|..|.+.+. ++.++|+...
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            346789999999999999999998876 7899998643

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.33  E-value=0.13  Score=38.24  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcCC-------cEEEEccc
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRGQ-------KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g~-------~V~lvE~~   39 (413)
                      ..+|.|||| |..|.++|+.|+..+.       ...++|..
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            468999996 9999999999987532       35566543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.17  Score=44.41  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      ..+|+|||+|-.|+.+|..|+..|. +++|+|.+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            3579999999999999999999998 8999998754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=88.00  E-value=0.16  Score=41.47  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             CCccEEEECCCH-HHHHHHHHHHHcCCcEEEEcccC
Q 015072            6 ENFDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      +..-++|.||+- .|..+|..|++.|.+|++++++.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            345577777766 69999999999999999999864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.84  E-value=0.28  Score=37.09  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=28.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|. +|+++|..+
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            359999999999999999988886 688888754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=87.81  E-value=0.34  Score=37.54  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      ...|+|-|-|-.|..+|.+|.+.|.+|++.|.+
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            467999999999999999999999999998864

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.49  E-value=0.32  Score=39.28  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=25.1

Q ss_pred             EEEE-CC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072           10 VIVV-GA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvII-Gg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      |+|| || +=.|..+|..|++.|.+|+++++++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            5444 64 4579999999999999999998754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.37  E-value=0.3  Score=41.59  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=30.9

Q ss_pred             CccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..+|+|.| +|..|..++..|.++|++|..+++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            36799998 689999999999999999999997643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=86.58  E-value=0.45  Score=35.89  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=25.8

Q ss_pred             CCccEEEECC-CHHHHHHHHHHHHcC---C----cEEEEccc
Q 015072            6 ENFDVIVVGA-GIMGSSAAYQLAKRG---Q----KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGg-G~aG~~~A~~L~~~g---~----~V~lvE~~   39 (413)
                      +..+|.|+|| |..|.++|+.|++..   .    .+.|+|..
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~   64 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE   64 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc
Confidence            4468999996 999999999999752   2    45556643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.20  E-value=0.29  Score=39.65  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=27.6

Q ss_pred             CccEEEECCC---HHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAG---IMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG---~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..-++|.||+   =.|..+|..|++.|.+|++.++.+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            3558888864   269999999999999999987653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=86.13  E-value=0.43  Score=35.89  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      -.|+|+|+|..|++++..++..|. +|+.+|..+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            348899999999999999998866 688888754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.89  E-value=0.44  Score=35.90  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=28.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015072            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~   40 (413)
                      -.|+|+|+|-.|++++..++..|. +|++++.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            348999999999999999999874 888888654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.53  E-value=0.49  Score=40.06  Aligned_cols=32  Identities=31%  Similarity=0.601  Sum_probs=28.7

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015072            8 FDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      .+|+|.| .|..|..++.+|.++|++|+.+|+-
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~   35 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            4688887 5999999999999999999999974

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.52  E-value=0.46  Score=37.53  Aligned_cols=35  Identities=11%  Similarity=0.113  Sum_probs=29.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHc--------------------C-CcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKR--------------------G-QKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~--------------------g-~~V~lvE~~~~   41 (413)
                      ..+|+|||+|-+++=+|..|.+.                    | .+|.++.+...
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            46899999999999999999883                    4 48999987644

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=84.46  E-value=0.63  Score=35.28  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ...|.|||.|..|..+|..|...|.+|..+++...
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CceEEEeccccccccceeeeecccccccccccccc
Confidence            45799999999999999999999999999997644

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.40  E-value=0.49  Score=39.50  Aligned_cols=32  Identities=25%  Similarity=0.252  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .|+|.|| |..|..++.+|.++|++|..+++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4888876 9999999999999999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=84.32  E-value=0.51  Score=38.30  Aligned_cols=34  Identities=15%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             CCccEEEECC-CH--HHHHHHHHHHHcCCcEEEEccc
Q 015072            6 ENFDVIVVGA-GI--MGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGg-G~--aG~~~A~~L~~~g~~V~lvE~~   39 (413)
                      +...++|.|| |-  .|..+|..|++.|.+|++.+++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3456888885 44  7899999999999999998764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.32  E-value=0.35  Score=38.29  Aligned_cols=30  Identities=23%  Similarity=0.259  Sum_probs=26.1

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHcCCcEEEEc
Q 015072            8 FDVIVVG-AGIMGSSAAYQLAKRGQKTLLLE   37 (413)
Q Consensus         8 ~dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE   37 (413)
                      ..|+|.| .|..|..++..|.++|++|.+++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            5699999 59999999999999998877665

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=83.96  E-value=0.54  Score=35.27  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=24.6

Q ss_pred             CccEEEECCCHHHHHHHHH--HHHc----CCcEEEEcccC
Q 015072            7 NFDVIVVGAGIMGSSAAYQ--LAKR----GQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~--L~~~----g~~V~lvE~~~   40 (413)
                      +++|.|||||..|.+.+..  |.+.    +.+++|+|.+.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            4679999999999776542  3332    35899999763

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.90  E-value=0.61  Score=37.26  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=27.5

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .-++|.||+- .|..+|..|++.|.+|++.+++.
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4577777654 79999999999999999999764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.89  E-value=0.46  Score=35.54  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      -.|+|+|+ |..|+.++..+...|. +|++++.+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccc
Confidence            46999994 9999999988888884 88888865

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.82  E-value=0.34  Score=34.40  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=26.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      .++|+|.|-.|..++..|.  +..|.++|.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            4899999999999999994  567888887643

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=0.52  Score=39.26  Aligned_cols=31  Identities=19%  Similarity=0.482  Sum_probs=27.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcc
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~   38 (413)
                      .+|+|.|| |..|..++.+|.++|++|+.+++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            46888875 89999999999999999999985

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.75  E-value=0.41  Score=38.07  Aligned_cols=33  Identities=27%  Similarity=0.263  Sum_probs=27.9

Q ss_pred             cEEEECCCH-HHHHHHHHHHHcCCcEEEEcccCC
Q 015072            9 DVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      +|+|.||+- .|..+|..|+++|++|+++++...
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            488888765 499999999999999999988653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.64  E-value=0.55  Score=36.80  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             CccEEEECCCHHHHHHHHHHH--------------------HcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLA--------------------KRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~--------------------~~g~-~V~lvE~~~~   41 (413)
                      ..+|+|||+|-+++=+|..|.                    +.|. +|.++-+...
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            358999999999999999887                    3454 6888877543

>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=83.51  E-value=1.7  Score=30.13  Aligned_cols=100  Identities=12%  Similarity=-0.009  Sum_probs=52.2

Q ss_pred             eeEEEEEEEEEEecCCCcccc--ccCCCCceEEecCCCeeEecCCCCCCCeEEEEeCC-CCcCCCCC--------C--CC
Q 015072          227 IQAVETSVCYWRIKEGDEADY--AVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHR-GYLCDPDR--------R--PW  293 (413)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~-~~~~~~~~--------~--~~  293 (413)
                      +.|+.+++++.+.-+.....-  .....+|+.... +..+|.+...  +|+++|+... ...++++.        .  ++
T Consensus         1 lvPveHqY~vTepip~l~~~~~~~~~~~~P~vRD~-d~~~Y~R~e~--~gll~G~yE~~~~~~~~~~~~~~~~~~~~~~~   77 (119)
T d1pj5a3           1 LLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQ-DQDLYYREHG--DRYGIGSYAHRPMPVDVDTLGAYAPETVSEHH   77 (119)
T ss_dssp             CEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEEEG-GGTEEEEEET--TEEEEEECCSCCCBCCGGGSCCCCGGGCBTTB
T ss_pred             CccccceEEeecCchHhhhcccccCCCCCCEEEeC-CCCEEEEEeC--CeEEEeecCCCCcccccccccccCccCCCccc
Confidence            357778877665322111000  011346766544 4569998654  3666655522 11111110        0  00


Q ss_pred             CC------CcchHHHHHHHHhhcCCCCCCCCCceeeeeeeecc
Q 015072          294 GP------GPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMT  330 (413)
Q Consensus       294 ~~------~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t  330 (413)
                      ..      .+.++..++.+.+++|.+.+. .+-....|..++|
T Consensus        78 ~~~~~~~d~d~~~~~~e~a~~r~P~l~~~-gi~~~~NGp~sfT  119 (119)
T d1pj5a3          78 MPSRLDFTLEDFLPAWEATKQLLPALADS-EIEDGFNGIFSFT  119 (119)
T ss_dssp             STTEECCCHHHHHHHHHHHHHHCGGGGGS-CEEEEEEEEEEEC
T ss_pred             chhhCCCcHHHHHHHHHHHHHhcCCcccc-cccceeecCcccC
Confidence            00      014566778888999999975 4445677877765

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.91  E-value=0.57  Score=37.50  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=26.0

Q ss_pred             EEEECCCH-HHHHHHHHHHHcCCcEEEEcccC
Q 015072           10 VIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|.||+- .|..+|..|+++|.+|++.++..
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            55557766 59999999999999999999864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.91  E-value=0.53  Score=40.66  Aligned_cols=29  Identities=28%  Similarity=0.569  Sum_probs=26.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEc
Q 015072            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLE   37 (413)
Q Consensus         9 dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE   37 (413)
                      +|+|.|| |..|..++.+|.++|++|+++|
T Consensus         3 kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           3 RVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            4888864 9999999999999999999997

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=82.88  E-value=0.63  Score=34.85  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=26.4

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~   39 (413)
                      .-.|+|+|+|..|+.++..+...|. .|+++|..
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            3569999999999999888887776 56666664

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=82.70  E-value=0.62  Score=37.90  Aligned_cols=34  Identities=12%  Similarity=0.090  Sum_probs=28.7

Q ss_pred             CccEEEECC-C--HHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGA-G--IMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGg-G--~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...++|.|| |  =.|..+|..|+++|.+|++.++++
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            456889986 3  389999999999999999999864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.29  E-value=0.63  Score=37.26  Aligned_cols=33  Identities=21%  Similarity=0.428  Sum_probs=27.0

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .-++|.||+- .|..+|..|+++|.+|++++++.
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3456777665 59999999999999999999864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.27  E-value=0.78  Score=37.23  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=26.7

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .-++|.||+- .|..+|..|+++|.+|++++++.
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4466667654 59999999999999999999753

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=81.98  E-value=0.68  Score=39.40  Aligned_cols=32  Identities=22%  Similarity=0.244  Sum_probs=27.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      -|+|.| +|..|..++.+|.++|++|+.+++..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            356878 89999999999999999999999853

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.84  E-value=0.32  Score=36.25  Aligned_cols=32  Identities=9%  Similarity=0.102  Sum_probs=23.0

Q ss_pred             cEEEECCCHHHHHHHHHHHH--c----CCcEEEEcccC
Q 015072            9 DVIVVGAGIMGSSAAYQLAK--R----GQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGgG~aG~~~A~~L~~--~----g~~V~lvE~~~   40 (413)
                      +|+|||||..|.+.++...-  .    ..++.|+|.++
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~   39 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDE   39 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCc
Confidence            49999999888777754322  2    34899999753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=81.72  E-value=0.6  Score=37.78  Aligned_cols=31  Identities=29%  Similarity=0.335  Sum_probs=24.9

Q ss_pred             EEEECCCH-HHHHHHHHHHHcCCcEEEEcccC
Q 015072           10 VIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|.||+- .|..+|..|+++|.+|++.++.+
T Consensus         7 alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45555544 68999999999999999998753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.56  E-value=1.1  Score=29.19  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHH-HHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIMGSS-AAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~aG~~-~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++|-+||-|=+|++ +|..|.++|++|.--|..+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            45889998888886 5899999999999998753

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.54  E-value=0.79  Score=36.36  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=28.6

Q ss_pred             ccEEEECCCH-HHHHHHHHHHHcCCcEEEEcccCC
Q 015072            8 FDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGgG~-aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ..|+|.||+- .|..+|..|+++|.+|.++++...
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4588898854 699999999999999999987543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.45  E-value=1.4  Score=31.77  Aligned_cols=33  Identities=33%  Similarity=0.462  Sum_probs=26.0

Q ss_pred             CccEEEECC-CHHHHHHHHHHHHcC---CcEEEEccc
Q 015072            7 NFDVIVVGA-GIMGSSAAYQLAKRG---QKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGg-G~aG~~~A~~L~~~g---~~V~lvE~~   39 (413)
                      ++.|.|||| |++|.-+...|.+++   .++..+-..
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~   38 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA   38 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence            356999998 999999999998764   367766443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=81.33  E-value=0.52  Score=38.22  Aligned_cols=33  Identities=21%  Similarity=0.240  Sum_probs=25.6

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .-++|.|| +=.|..+|..|++.|.+|++.++..
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            33555554 4469999999999999999998753

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.29  E-value=2.5  Score=37.24  Aligned_cols=44  Identities=30%  Similarity=0.452  Sum_probs=39.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC
Q 015072            5 GENFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         5 ~~~~dvvIIGgG~aG~~~A~~L~~~g~~V~lvE~~~~~~~~~~s   48 (413)
                      ..++||||+|.|+.=+.+|..|++.|++|+=+|+++.-|+..+|
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS   47 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   47 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence            45799999999999999999999999999999999987765444

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.26  E-value=0.84  Score=36.48  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=25.5

Q ss_pred             EEEE--CCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072           10 VIVV--GAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvII--GgG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ++||  |++-.|..+|..|+++|.+|+++++++
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           8 VIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4555  455669999999999999999999764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.25  E-value=0.66  Score=37.41  Aligned_cols=34  Identities=12%  Similarity=0.202  Sum_probs=27.7

Q ss_pred             CccEEEECCC-HHHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAG-IMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG-~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ..-++|.||+ =.|..+|..|+++|.+|++.+++.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3457777874 459999999999999999998753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.23  E-value=1.1  Score=36.83  Aligned_cols=32  Identities=13%  Similarity=0.193  Sum_probs=26.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015072            9 DVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIG-gG~aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      -++|.| +|-.|..+|..|++.|.+|++.+++.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            355555 56779999999999999999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.18  E-value=0.71  Score=37.15  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=27.6

Q ss_pred             CccEEEECCCH---HHHHHHHHHHHcCCcEEEEcccC
Q 015072            7 NFDVIVVGAGI---MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGgG~---aG~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      ...++|.||+-   .|..+|..|++.|.+|++.++++
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            35578888754   57899999999999999998764

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.85  E-value=0.53  Score=42.51  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015072            7 NFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGgG~aG~~~A~~L~~~g~-~V~lvE~~~~   41 (413)
                      +..|+|||+|..|.-+|..|+..|. +++|+|.+..
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v   60 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQV   60 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcC
Confidence            4679999999999999999999996 8999997643

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.55  E-value=0.47  Score=38.85  Aligned_cols=36  Identities=17%  Similarity=0.402  Sum_probs=29.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHHHc----CC-------cEEEEcccCC
Q 015072            6 ENFDVIVVGAGIMGSSAAYQLAKR----GQ-------KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGgG~aG~~~A~~L~~~----g~-------~V~lvE~~~~   41 (413)
                      .+.+|+|.|+|.+|+.+|..|...    |.       ++.++|+...
T Consensus        24 ~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          24 SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            457899999999999999998654    32       5999998644

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.41  E-value=0.86  Score=36.06  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015072           10 VIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus        10 vvIIGg-G~aG~~~A~~L~~~g~~V~lvE~~~~   41 (413)
                      ++|.|| +=.|..+|..|+++|.+|++.+++..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            566666 55699999999999999999998654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.06  E-value=0.8  Score=36.92  Aligned_cols=33  Identities=24%  Similarity=0.178  Sum_probs=27.0

Q ss_pred             ccEEEECCCHH-HHHHHHHHHHcCCcEEEEcccC
Q 015072            8 FDVIVVGAGIM-GSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGgG~a-G~~~A~~L~~~g~~V~lvE~~~   40 (413)
                      .-++|.||+-. |..+|..|+++|.+|++.+++.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34777776654 9999999999999999998763