Citrus Sinensis ID: 015099

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---

MSHPFVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA

cccccHHHHHHHHHHHccccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEcccccccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccEEEEEccccccccccHHcHHHHHHHHHHHcccccccccccEEEcccccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccc

ccccEEEEEHHHHHHcccHHHHcccccEEEEEEcccccEEEEEEEEEEEEEccccccccHHHHHHHHHcccHHccccccEEEEcccccEEEEEEEcccccEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccHHccccccccEEEEEEcccccccccEEEcccccccccccccccccccEEHHHHcccccccccHHHHHHHHHHHHHHHccccccccEEEEEccccccHcHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccc

MSHPFVWVELYRSLYSYshycikdqpseYVIKFFITTTTIIFFMVSSFmwqdytgedvtvENFFAVILGNktaltggsgkvvdsgpndhififysdhggpgvlgmptsryIYADELIDVLKKKHASGNYKSLVFYLEACesgsifegllpeglniyattasnaeesswgtycpgeipgpppeystclgdlysiawmedsdihnlrTETLHQQYELVKTRTAsynsygshvmqygdiglsknnlftylgtnpandnytfvdenslrpaskavnqrDADLLHFWDKyrkapegtprKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFgiekgpeilntvrpagqplvddwgCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQacenipsgpwssldkgfsa

MSHPFVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYrkapegtpRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQAcenipsgpwssldkgfsa

MSHPFVWVELYRSLYSYSHYCIKDQPSEYVikffittttiiffMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA

****FVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDE************RDADLLHFWDKY****************FFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIG*****************************

**HPFVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKT***********SGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNP*********************QRDADLLHFWD******************FFEAMSHRMHVDHSIKLIGKLLFGIE**************PLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSS****F**

MSHPFVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKA**********QKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPW*********

*SHPFVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNP*********ENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSG***********

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oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		413	2.2.26 [Sep-21-2011]
P49043		494	Vacuolar-processing enzym	no	no	0.878	0.734	0.988	0.0
O24325		484	Vacuolar-processing enzym	N/A	no	0.878	0.75	0.777	1e-172
Q39119		494	Vacuolar-processing enzym	yes	no	0.878	0.734	0.777	1e-167
P49044		493	Vacuolar-processing enzym	N/A	no	0.876	0.734	0.749	1e-163
P49047		478	Vacuolar-processing enzym	no	no	0.876	0.757	0.758	1e-161
P49042		497	Vacuolar-processing enzym	N/A	no	0.876	0.728	0.572	1e-125
P49045		495	Vacuolar-processing enzym	no	no	0.876	0.731	0.569	1e-125
P49046		475	Legumain OS=Canavalia ens	N/A	no	0.876	0.762	0.567	1e-121
Q39044		486	Vacuolar-processing enzym	no	no	0.830	0.705	0.583	1e-120
O24326		493	Vacuolar-processing enzym	N/A	no	0.876	0.734	0.564	1e-118

>sp\|P49043\|VPE_CITSI Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1	Back alignment and function desciption

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/363 (98%), Positives = 361/363 (99%)

Query: 51  QDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRY 110
           +DYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRY
Sbjct: 132 KDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRY 191

Query: 111 IYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGT 170
           IYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATTASNAEESSWGT
Sbjct: 192 IYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATTASNAEESSWGT 251

Query: 171 YCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHV 230
           YCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHV
Sbjct: 252 YCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHV 311

Query: 231 MQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPE 290
           MQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPE
Sbjct: 312 MQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPE 371

Query: 291 GTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCL 350
           GTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCL
Sbjct: 372 GTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCL 431

Query: 351 KSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKG 410
           KSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKG
Sbjct: 432 KSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKG 491

Query: 411 FSA 413
           FSA
Sbjct: 492 FSA 494

Asparagine-specific endopeptidase that may be involved in processing of proteins targeted to vacuoles that accumulate during ethylene-regulated processes such as flower opening and flavedo degreening.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp\|O24325\|VPE1_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1	Back alignment and function description

>sp\|Q39119\|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2	Back alignment and function description

>sp\|P49044\|VPE_VICSA Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1	Back alignment and function description

>sp\|P49047\|VPEA_ARATH Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2	Back alignment and function description

>sp\|P49042\|VPE_RICCO Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|P49045\|VPE_SOYBN Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1	Back alignment and function description

>sp\|P49046\|LEGU_CANEN Legumain OS=Canavalia ensiformis PE=1 SV=1	Back alignment and function description

>sp\|Q39044\|VPEB_ARATH Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3	Back alignment and function description

>sp\|O24326\|VPE2_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		413
1351408		494	RecName: Full=Vacuolar-processing enzyme	0.878	0.734	0.988	0.0
224141591		489	predicted protein [Populus trichocarpa]	0.878	0.742	0.851	0.0
233142300		493	vacuolar processing enzyme a [Populus to	0.878	0.736	0.848	0.0
225429442		493	PREDICTED: vacuolar-processing enzyme [V	0.878	0.736	0.840	0.0
224088921		493	predicted protein [Populus trichocarpa]	0.878	0.736	0.851	0.0
147799465		493	hypothetical protein VITISV_040193 [Viti	0.878	0.736	0.840	0.0
255550848		492	Vacuolar-processing enzyme precursor, pu	0.878	0.737	0.835	0.0
237861979		494	vacuolar processing enzyme [Malus hupehe	0.878	0.734	0.826	0.0
356514571		484	PREDICTED: vacuolar-processing enzyme-li	0.878	0.75	0.826	0.0
34530959		483	unnamed protein product [Homo sapiens]	0.878	0.751	0.821	1e-179

>gi\|1351408\|sp\|P49043.1\|VPE_CITSI RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|633185\|emb\|CAA87720.1\| cystein proteinase (by similarity) [Citrus sinensis] gi\|1588548\|prf\|\|2208463A vascular processing protease	Back alignment and taxonomy information

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/363 (98%), Positives = 361/363 (99%)

Query: 51  QDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRY 110
           +DYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRY
Sbjct: 132 KDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRY 191

Query: 111 IYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGT 170
           IYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATTASNAEESSWGT
Sbjct: 192 IYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATTASNAEESSWGT 251

Query: 171 YCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHV 230
           YCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHV
Sbjct: 252 YCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHV 311

Query: 231 MQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPE 290
           MQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPE
Sbjct: 312 MQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPE 371

Query: 291 GTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCL 350
           GTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCL
Sbjct: 372 GTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCL 431

Query: 351 KSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKG 410
           KSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKG
Sbjct: 432 KSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKG 491

Query: 411 FSA 413
           FSA
Sbjct: 492 FSA 494

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224141591\|ref\|XP_002324151.1\| predicted protein [Populus trichocarpa] gi\|222865585\|gb\|EEF02716.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|233142300\|gb\|ACQ91103.1\| vacuolar processing enzyme a [Populus tomentosa]	Back alignment and taxonomy information

>gi\|225429442\|ref\|XP_002276759.1\| PREDICTED: vacuolar-processing enzyme [Vitis vinifera] gi\|296081609\|emb\|CBI20614.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224088921\|ref\|XP_002308580.1\| predicted protein [Populus trichocarpa] gi\|222854556\|gb\|EEE92103.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147799465\|emb\|CAN70603.1\| hypothetical protein VITISV_040193 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255550848\|ref\|XP_002516472.1\| Vacuolar-processing enzyme precursor, putative [Ricinus communis] gi\|223544292\|gb\|EEF45813.1\| Vacuolar-processing enzyme precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|237861979\|gb\|ACR24644.1\| vacuolar processing enzyme [Malus hupehensis var. mengshanensis]	Back alignment and taxonomy information

>gi\|356514571\|ref\|XP_003525979.1\| PREDICTED: vacuolar-processing enzyme-like [Glycine max]	Back alignment and taxonomy information

>gi\|34530959\|dbj\|BAC86022.1\| unnamed protein product [Homo sapiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		413
TAIR\|locus:2123782		494	GAMMA-VPE "gamma vacuolar proc	0.878	0.734	0.777	1.2e-161
TAIR\|locus:2043510		478	ALPHA-VPE "alpha-vacuolar proc	0.876	0.757	0.758	5.1e-154
TAIR\|locus:2026242		486	BETA-VPE "beta vacuolar proces	0.830	0.705	0.583	1.4e-112
TAIR\|locus:2087625		466	DELTA-VPE "delta vacuolar proc	0.835	0.740	0.491	1.2e-90
ZFIN\|ZDB-GENE-021030-1		438	lgmn "legumain" [Danio rerio (	0.774	0.730	0.347	5.8e-50
WB\|WBGene00012144		462	T28H10.3 [Caenorhabditis elega	0.748	0.668	0.355	1.1e-48
UNIPROTKB\|E2QXF2		433	LGMN "Uncharacterized protein"	0.445	0.424	0.467	6.8e-47
UNIPROTKB\|E1C958		431	LGMN "Uncharacterized protein"	0.769	0.737	0.348	3.8e-46
RGD\|619832		435	Lgmn "legumain" [Rattus norveg	0.445	0.422	0.462	3.3e-45
UNIPROTKB\|Q9R0J8		435	Lgmn "Legumain" [Rattus norveg	0.445	0.422	0.462	3.3e-45

TAIR\|locus:2123782 GAMMA-VPE "gamma vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1574 (559.1 bits), Expect = 1.2e-161, P = 1.2e-161
 Identities = 283/364 (77%), Positives = 322/364 (88%)

Query:    51 QDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRY 110
             +DYTG+DV V+N FAVILG+KTA+ GGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTS Y
Sbjct:   131 KDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSPY 190

Query:   111 IYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGT 170
             +YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGT
Sbjct:   191 LYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGT 250

Query:   171 YCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYN-SYGSH 229
             YCPGE P PPPEY TCLGDLYS+AWMEDS +HNL+TETLHQQYELVK RTA    SYGSH
Sbjct:   251 YCPGEEPSPPPEYETCLGDLYSVAWMEDSGMHNLQTETLHQQYELVKRRTAPVGYSYGSH 310

Query:   230 VMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAP 289
             VMQYGD+G+SK+NL  Y+GTNPANDN+TF D NSL+P S+  NQRDADL+HFW+KYRKAP
Sbjct:   311 VMQYGDVGISKDNLDLYMGTNPANDNFTFADANSLKPPSRVTNQRDADLVHFWEKYRKAP 370

Query:   290 EGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGC 349
             EG+ RK EAQKQ  EAMSHR+H+D+S+ L+GK+LFGI +GPE+LN VR AGQPLVDDW C
Sbjct:   371 EGSARKTEAQKQVLEAMSHRLHIDNSVILVGKILFGISRGPEVLNKVRSAGQPLVDDWNC 430

Query:   350 LKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDK 409
             LK+ VR FE HCG+LSQYG+KHMRS ANICN GI  E+M EA++QAC  +P+GPWSSL++
Sbjct:   431 LKNQVRAFERHCGSLSQYGIKHMRSFANICNAGIQMEQMEEAASQACTTLPTGPWSSLNR 490

Query:   410 GFSA 413
             GFSA
Sbjct:   491 GFSA 494

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0000323 "lytic vacuole" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006624 "vacuolar protein processing" evidence=ISS

TAIR\|locus:2043510 ALPHA-VPE "alpha-vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026242 BETA-VPE "beta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087625 DELTA-VPE "delta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-021030-1 lgmn "legumain" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

WB\|WBGene00012144 T28H10.3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXF2 LGMN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C958 LGMN "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|619832 Lgmn "legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9R0J8 Lgmn "Legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49044	VPE_VICSA	3, ., 4, ., 2, 2, ., -	0.7493	0.8765	0.7342	N/A	no
P49043	VPE_CITSI	3, ., 4, ., 2, 2, ., -	0.9889	0.8789	0.7348	no	no
Q39119	VPEG_ARATH	3, ., 4, ., 2, 2, ., -	0.7774	0.8789	0.7348	yes	no
O24325	VPE1_PHAVU	3, ., 4, ., 2, 2, ., -	0.7774	0.8789	0.75	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.921
3rd Layer	3.4.22.34	0.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		413
pfam01650		258	pfam01650, Peptidase_C13, Peptidase C13 family	1e-100
COG5206		382	COG5206, GPI8, Glycosylphosphatidylinositol transa	5e-08

>gnl\|CDD\|216627 pfam01650, Peptidase_C13, Peptidase C13 family	Back alignment and domain information

 Score =  299 bits (768), Expect = e-100
 Identities = 122/198 (61%), Positives = 148/198 (74%), Gaps = 13/198 (6%)

Query: 52  DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYI 111
           DYTG DVT  NF AV+LG+K+AL G SGKV+ SGPND++FI+++DHG PGVLG P   Y+
Sbjct: 74  DYTGNDVTPRNFLAVLLGDKSALKG-SGKVLKSGPNDNVFIYFTDHGAPGVLGFPELDYL 132

Query: 112 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTY 171
           YA +L + LKK HA G YK LVFY+EACESGS+FEG LP+ +NIYATTA+NA+ESSWGTY
Sbjct: 133 YAKDLAEALKKMHARGKYKKLVFYVEACESGSMFEG-LPKDINIYATTAANADESSWGTY 191

Query: 172 CPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVM 231
           C      P PE  TCLGDL+S+ WMEDSD H+L  ETL QQ+ELVK RT      GSHVM
Sbjct: 192 C------PDPEDGTCLGDLFSVNWMEDSDDHDLSKETLEQQFELVKNRTT-----GSHVM 240

Query: 232 QYGDIGLSKNNLFTYLGT 249
           QYGD  + +  +  + GT
Sbjct: 241 QYGDKSIPQLPVSLFQGT 258

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258

>gnl\|CDD\|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		413
KOG1348		477	consensus Asparaginyl peptidases [Posttranslationa	100.0
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	100.0
KOG1349		309	consensus Gpi-anchor transamidase [Posttranslation	100.0
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	100.0
PF00656		248	Peptidase_C14: Caspase domain; InterPro: IPR011600	98.86
KOG1546		362	consensus Metacaspase involved in regulation of ap	97.26
smart00115		241	CASc Caspase, interleukin-1 beta converting enzyme	96.48
cd00032		243	CASc Caspase, interleukin-1 beta converting enzyme	96.08
PF14538		154	Raptor_N: Raptor N-terminal CASPase like domain	89.86
PF12770		287	CHAT: CHAT domain	86.06

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1e-131  Score=971.21  Aligned_cols=406  Identities=58%  Similarity=0.987  Sum_probs=393.6

Q ss_pred             CceeeecccccccchhhhhhhhhHHHHhcCCCCCcEEEEee------------------------cCCccccCCCCCCCH
Q 015099            5 FVWVELYRSLYSYSHYCIKDQPSEYVIKFFITTTTIIFFMV------------------------SSFMWQDYTGEDVTV   60 (413)
Q Consensus         5 ~~~v~~sr~~~nyrH~~n~~~~y~~l~~~gi~d~~Iil~~~------------------------~~~v~iDY~g~~vt~   60 (413)
                      -|+|--|-.||||||+|++-..||+||+.|||++||++||+                        |.|||+||+|++|||
T Consensus        48 aVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NPrpG~iiN~P~G~DvY~GvpkDYtg~~Vt~  127 (477)
T KOG1348|consen   48 AVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENPRPGVIINRPNGKDVYQGVPKDYTGEDVTP  127 (477)
T ss_pred             EEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCCCCceeecCCCchhhhcCCCCcccCCcCCH
Confidence            47899999999999999999999999999999999999999                        799999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeeccc
Q 015099           61 ENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACE  140 (413)
Q Consensus        61 ~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~  140 (413)
                      +||++||.|++++++|||||||+|+|||||||||+||||||+|+||+++.|+++||+++|++||+.++|++||||+||||
T Consensus       128 ~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACE  207 (477)
T KOG1348|consen  128 QNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACE  207 (477)
T ss_pred             HHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcchhHHHHHHHHHHHHhccchheEEEEeeecc
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             ccccccccCCCCCcEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHHHHHhhh
Q 015099          141 SGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRT  220 (413)
Q Consensus       141 SgSm~~~~l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~~v~~~t  220 (413)
                      |||||+++||+|+||||+||||+.||||++|||+++|.|+.++.|||||+||++||||||.+|+.+|||.|||+.||++|
T Consensus       208 SGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt  287 (477)
T KOG1348|consen  208 SGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRT  287 (477)
T ss_pred             CcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccceeeeeeccCccccchHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCceeecCCccccccceeecccCCCCCCccccCCCCCCcCCccccccchhHHHHHHHHHcCCCCcHHHHHHHH
Q 015099          221 ASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQK  300 (413)
Q Consensus       221 ~~~~t~~Shv~~yGd~~~~~~~v~~f~g~~~~~~~~~~~~~~~l~~~~~~v~sRDa~L~~L~~k~~~a~~~~~ek~~a~~  300 (413)
                      +.....|||||||||..|++++|..|||.+|+++++++. +.+..++++.|||||+||++||+|++++++++.++.++++
T Consensus       288 ~~s~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~-~~s~~~~s~~~n~rD~~L~~l~~k~rka~dgs~~s~e~~k  366 (477)
T KOG1348|consen  288 NTSYSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLP-ASSHKSPSGLTNQRDAPLLHLWRKYRKANDGSAESRELQK  366 (477)
T ss_pred             CCCCCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCC-ccCcCCccccCCCCCccHHHHHHHHhcCcccchhhHHHHH
Confidence            998789999999999999999999999999999999887 4455567889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccCCCCCCCcCCcchHHHHHHHHhhhcCCCchhhhhHHHHHHHHhc
Q 015099          301 QFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICN  380 (413)
Q Consensus       301 eL~~~l~~R~~id~~v~~I~~ll~g~~~~~~~l~~~r~~g~plv~d~dCyk~~V~~Fe~~Cg~l~eY~lk~~~~laNLC~  380 (413)
                      +|.++++||++||+++..|+.++||. +...+|+.+|+.|+||++||+|+|.+|++|++|||+++||||||||+|+||||
T Consensus       367 ~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~g~Plvddw~C~k~~v~~F~~hCg~~~~YglKh~~~~aN~Cn  445 (477)
T KOG1348|consen  367 EILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSEGQPLVDDWDCLKSAVRHFETHCGSTYEYGLKHMRVLANMCN  445 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988 34468888999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHhhhcCCCCCCCCCcccCCC
Q 015099          381 TGIGKEKMAEASAQACENIPSGPWSSLDKGFS  412 (413)
Q Consensus       381 ~g~~~~~i~~Ai~~vC~~~~~~~~~~~~~~~~  412 (413)
                      .|++.++|.+|+.++|...+..+|.++..|||
T Consensus       446 ~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs  477 (477)
T KOG1348|consen  446 KGVPLEQIELAMDQACLGIYTEPWSSLRRGFS  477 (477)
T ss_pred             cCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence            99999999999999999999999999999997

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues	Back alignment and domain information

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)	Back alignment and domain information

>PF14538 Raptor_N: Raptor N-terminal CASPase like domain	Back alignment and domain information

>PF12770 CHAT: CHAT domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		413
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 45/316 (14%), Positives = 81/316 (25%), Gaps = 121/316 (38%)

Query: 107 TSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIF-------EGLLPE-------- 151
           T+R+    + +      H S ++ S+    +  E  S+           LP         
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 152 GLNIYATTASNAEESSWGTY--------------CPGEIPGPPPEYSTCLGDL------- 190
            L+I A +  +   ++W  +                  +   P EY      L       
Sbjct: 329 RLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSA 385

Query: 191 ------YSIAWMEDSD--------------------------IHNLRTE---------TL 209
                  S+ W +                             I ++  E          L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 210 HQ----QYELVKTRTAS-----------YNSYGSHVMQYGDIGLSKNNLFT--YLGTNPA 252
           H+     Y + KT  +            Y+  G H+         +  LF   +L     
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFL----- 498

Query: 253 NDNYTFVDENSLRPASKAVNQRD--ADLLHFWDKYRK-------APEGTPRKAEAQKQFF 303
             ++ F+ E  +R  S A N      + L     Y+          E   R   A   F 
Sbjct: 499 --DFRFL-EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVNAILDFL 552

Query: 304 EAMSHRMHVDHSIKLI 319
             +   +       L+
Sbjct: 553 PKIEENLICSKYTDLL 568

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		413
3bij_A		285	Uncharacterized protein GSU0716; alpha-beta protei	99.34
4af8_A		367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	99.03
4f6o_A		350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	98.96
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	98.61
1m72_A		272	Caspase-1; caspase, cysteine protease, hydrolase-h	94.68
2j32_A		250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	94.34
1f1j_A		305	Caspase-7 protease; caspase-7, cysteine protease,	94.29
3h11_B		271	Caspase-8; cell death, apoptosis, caspase, alterna	94.18
3sir_A		259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	93.85
4ehd_A		277	Caspase-3; caspase, apoptosis, allosteric inhibiti	93.3
2nn3_C		310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	93.17
3od5_A		278	Caspase-6; caspase domain, apoptotic protease, hyd	93.03
1nw9_B		277	Caspase 9, apoptosis-related cysteine protease; XI	92.32
2fp3_A		316	Caspase NC; apoptosis, initiator caspase activatio	91.65
3e4c_A		302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	90.8
2h54_A		178	Caspase-1; allosteric site, dimer interface, hydro	90.29

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}	Back alignment and structure

Probab=99.34  E-value=3.4e-12  Score=124.45  Aligned_cols=169  Identities=13%  Similarity=0.123  Sum_probs=122.8

Q ss_pred             hhhhhhhhHHHHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCC
Q 015099           20 YCIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG   99 (413)
Q Consensus        20 ~~n~~~~y~~l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~   99 (413)
                      ..++-.+.++|+++|++   |++++-          .+.|.+|+++.|..-.          -+..|+|.+||||+|||.
T Consensus        30 ~nDa~~~~~~L~~~Gf~---v~~l~~----------~~~t~~~i~~al~~l~----------~~~~~~D~~~~yfSGHG~   86 (285)
T 3bij_A           30 EADAEDMAAIAAERGFA---VTTLMT----------KAATRAKVIDAIGKAA----------KALGKGDIFMLSYSGHGG   86 (285)
T ss_dssp             HHHHHHHHHHHHHTTCE---EEEEEG----------GGCCHHHHHHHHHHHH----------HHCCTTCEEEEEEESCEE
T ss_pred             HHHHHHHHHHHHHcCCc---eEEecC----------CccCHHHHHHHHHHHH----------HhCCCCCEEEEEEcCCcc
Confidence            35788899999999997   555542          2589999999987321          124688999999999996


Q ss_pred             C-------------CCcCCCCCCCCCHHHHHHHHHHHHHcCCCceEEEeeecccccccccc-------------------
Q 015099          100 P-------------GVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEG-------------------  147 (413)
Q Consensus       100 ~-------------g~l~fp~~~~l~a~dL~~~l~~m~~~~~y~~~v~~iEaC~SgSm~~~-------------------  147 (413)
                      .             ++|...|+ .|..++|.+.|+.|.   .-+++++++|+|+||++.++                   
T Consensus        87 ~~~~~~g~e~dg~~~~l~p~D~-~i~~~~l~~~l~~l~---~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~  162 (285)
T 3bij_A           87 QVPDTSNDEPDGVDETWCLFDG-ELIDDELYALLGKFA---AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEI  162 (285)
T ss_dssp             EEECTTSCCTTCEEEEEECSSS-EEEHHHHHHHHTTSC---SSCEEEEEEECCCCCCHHHHHHTTC-------------C
T ss_pred             cccCCCCCccCCCcceEEecCC-CccHHHHHHHHHhcc---CCCeEEEEEecCCCCcccccccccccccccccccccccc
Confidence            2             35555555 477889999887663   35789999999999998762                   


Q ss_pred             ---cCC-----------------------------CCCcEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhh
Q 015099          148 ---LLP-----------------------------EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAW  195 (413)
Q Consensus       148 ---~l~-----------------------------~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~w  195 (413)
                         .+|                             ...++++++|+.++|.||-.-          .-     -.||.++
T Consensus       163 ~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~lsa~~~~q~A~e~~----------~~-----G~FT~aL  227 (285)
T 3bij_A          163 RYRAMPQSVAMRTYRANREFYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGA----------FN-----GAFTGQL  227 (285)
T ss_dssp             EESBCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTTCSSEEEEEESSCTTSCCEECS----------SS-----CHHHHHH
T ss_pred             ceeecCchhhhhhhhcchhHHHHHhhhcccccccCCCCCEEEEEeCCCCccccccc----------cC-----CHHHHHH
Confidence               011                             123689999999999998631          11     2688888


Q ss_pred             ccccccccCccccHHHHHHHHHhhhcccCCCCCCceeecC
Q 015099          196 MEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGD  235 (413)
Q Consensus       196 me~~~~~~~~~~Tl~~~f~~v~~~t~~~~t~~Shv~~yGd  235 (413)
                      ++-..... ...|+.++++.|++++..    ..+|+.||.
T Consensus       228 l~~L~~~~-~~~s~~~l~~~v~~~~~~----~Q~P~~~~~  262 (285)
T 3bij_A          228 LRVWKNGL-YKGSYRSFHKAIVRRMPP----DQTPNFFTA  262 (285)
T ss_dssp             HHHHGGGT-CCSCHHHHHHHHHHHSCT----TCCCEEEEE
T ss_pred             HHHHhhCC-CCcCHHHHHHHHHHhcCC----CCCcceeCC
Confidence            76443222 346999999999987754    488888874

PyMOL of 3bij

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A	Back alignment and structure

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B	Back alignment and structure

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A	Back alignment and structure

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*	Back alignment and structure

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*	Back alignment and structure

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A	Back alignment and structure

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A	Back alignment and structure

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}	Back alignment and structure

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*	Back alignment and structure

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A	Back alignment and structure

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}	Back alignment and structure

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}	Back alignment and structure

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		413
g1qtn.1		242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1nw9b_		277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	97.83
g1sc3.1		261	Interleukin-1beta converting enzyme (a cysteine pr	97.21
g1nme.1		238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	96.73
g1pyo.1		257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	96.57
d1m72a_		256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	96.11
d1f1ja_		245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	94.89

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=3.9e-05  Score=70.72  Aligned_cols=163  Identities=15%  Similarity=0.184  Sum_probs=94.7

Q ss_pred             hhhhhhhHHHHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC
Q 015099           21 CIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP  100 (413)
Q Consensus        21 ~n~~~~y~~l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~  100 (413)
                      .++-.+-++|+++|+.   +.+.            .+.|.+.+.+.|.--..       +  ..++.|.++|||+|||..
T Consensus        46 ~Da~~l~~~l~~lGF~---V~~~------------~nlt~~~~~~~l~~~~~-------~--~~~~~d~~v~~~~gHG~~  101 (277)
T d1nw9b_          46 IDCEKLRRRFSSLHFM---VEVK------------GDLTAKKMVLALLELAR-------Q--DHGALDCCVVVILSHGCQ  101 (277)
T ss_dssp             HHHHHHHHHHHHTTEE---EEEE------------ESCCHHHHHHHHHHHHH-------S--CCTTCSEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHCCCE---EEEe------------eCCCHHHHHHHHHHhhh-------h--cccCCCEEEEEEeCCCcc
Confidence            3888999999999993   4433            13577888887752211       1  125679999999999965


Q ss_pred             C-Cc------CCCCCCCCCHHHHHHHHHHHH-HcCCCceEEEeeecccccccccc-------------------------
Q 015099          101 G-VL------GMPTSRYIYADELIDVLKKKH-ASGNYKSLVFYLEACESGSIFEG-------------------------  147 (413)
Q Consensus       101 g-~l------~fp~~~~l~a~dL~~~l~~m~-~~~~y~~~v~~iEaC~SgSm~~~-------------------------  147 (413)
                      . .+      .-+|+..+.-.++...+.... ..-+=|..+|+++||++|.+-.+                         
T Consensus       102 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d1nw9b_         102 ASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQ  181 (277)
T ss_dssp             CCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC---------------------------CBCCC
T ss_pred             cccccccCcccCCccccccHHHHHHHhHHhhhhhcccCcEEEEEecccCCcccccccccccCcccccccccccccccchh
Confidence            2 22      223444455566655443211 12233556899999999865332                         


Q ss_pred             -------------cCCCCCcEEEEeccCCCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHH
Q 015099          148 -------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYE  214 (413)
Q Consensus       148 -------------~l~~~~nv~~~tAs~~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~  214 (413)
                                   .+|...++++.-|+.++..||-.   +       ..++    +|....++-... .-...+|.+++.
T Consensus       182 ~~~~~~~~~~~~~~~p~~~d~~i~~st~~g~~a~~~---~-------~~gS----~f~~~L~~~l~~-~~~~~~l~~il~  246 (277)
T d1nw9b_         182 EGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRD---P-------KSGS----WYVETLDDIFEQ-WAHSEDLQSLLL  246 (277)
T ss_dssp             ------------CCCCCSCSEEEEEECCCCBSSTTC---T-------TSCB----HHHHHHHHHHHH-HTTTSCHHHHHH
T ss_pred             cccccccccccccccCCcccceEEEecccceEEecC---C-------CCCC----HHHHHHHHHHHH-hCCCCCHHHHHH
Confidence                         12333467777777777666532   1       2233    444444433222 123568999999


Q ss_pred             HHHhhhcc
Q 015099          215 LVKTRTAS  222 (413)
Q Consensus       215 ~v~~~t~~  222 (413)
                      .|.+++..
T Consensus       247 ~V~~~V~~  254 (277)
T d1nw9b_         247 RVANAVSV  254 (277)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99998865

PyMOL of d1nw9b_

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=96.11  E-value=0.0021  Score=58.71  Aligned_cols=162  Identities=15%  Similarity=0.177  Sum_probs=99.1

Q ss_pred             hhhhhhhHHHHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC
Q 015099           21 CIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP  100 (413)
Q Consensus        21 ~n~~~~y~~l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~  100 (413)
                      .++-.+-++|+++|+.-   .+.            .+.|.+.+.++|.--.       .+ . -++.|-++|||.|||+.
T Consensus        45 ~Da~~l~~~l~~lGF~V---~~~------------~nlt~~~m~~~l~~~~-------~~-~-~~~~d~~vv~~~~HG~~  100 (256)
T d1m72a_          45 VDSDNLSKVLKTLGFKV---TVF------------PNLKSEEINKFIQQTA-------EM-D-HSDADCLLVAVLTHGEL  100 (256)
T ss_dssp             HHHHHHHHHHHHTTCEE---EEE------------ESCCHHHHHHHHHHHH-------TS-C-CTTEEEEEEEEESCEET
T ss_pred             HHHHHHHHHHHHCCCEE---EEE------------eCCCHHHHHHHHHHHh-------hh-h-ccCCCeEEEEEeccCcC
Confidence            47888999999999952   222            3578888888886211       11 1 13457899999999999


Q ss_pred             CCcCCCCCCCCCHHHHHHHHHHHHHc-CCCceEEEeeecccccccccc----------------cCCCCCcEEEEeccCC
Q 015099          101 GVLGMPTSRYIYADELIDVLKKKHAS-GNYKSLVFYLEACESGSIFEG----------------LLPEGLNIYATTASNA  163 (413)
Q Consensus       101 g~l~fp~~~~l~a~dL~~~l~~m~~~-~~y~~~v~~iEaC~SgSm~~~----------------~l~~~~nv~~~tAs~~  163 (413)
                      |.|.=-|.. +..+++...+...... -+=|--+|+++||..+-+-.+                .+|...++++.-|+.+
T Consensus       101 ~~i~~~D~~-~~~~~~~~~~~~~~~~~L~~KPKif~lqACRg~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lia~st~~  179 (256)
T d1m72a_         101 GMLYAKDTH-YKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVP  179 (256)
T ss_dssp             TEEECSSSE-ECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBCBCCEEEEC---------CEEECTTCSEEEEESSCT
T ss_pred             CEEEecCCc-ccchHHhhhhhhhhhHHHcCCcEEEEEecCcCCcccCCccccccccccccccccccCCCCCeeEEEeccc
Confidence            977554553 5556665544221110 011224899999987543211                1233347888888888


Q ss_pred             CCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHHHHHhhhcc
Q 015099          164 EESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS  222 (413)
Q Consensus       164 ~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~~v~~~t~~  222 (413)
                      +.-||..-          ..|+    +|.-.+++-... ....+.|.+++..|.+++..
T Consensus       180 g~~a~~~~----------~~gS----~fi~~L~~~l~~-~~~~~~l~~il~~V~~~V~~  223 (256)
T d1m72a_         180 GYFSWRNT----------TRGS----WFMQALCEELRY-AGTERDILTLLTFVCQKVAL  223 (256)
T ss_dssp             TBCCEEET----------TTEE----HHHHHHHHHHHH-HTTTSCHHHHHHHHHHHHHH
T ss_pred             ceeeccCC----------CCCC----HHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHH
Confidence            87777531          2233    444444443222 23457899999999988864

PyMOL of d1m72a_

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.016  Score=52.04  Aligned_cols=162  Identities=12%  Similarity=0.166  Sum_probs=97.1

Q ss_pred             hhhhhhhHHHHhcCCCCCcEEEEeecCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC
Q 015099           21 CIKDQPSEYVIKFFITTTTIIFFMVSSFMWQDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP  100 (413)
Q Consensus        21 ~n~~~~y~~l~~~gi~d~~Iil~~~~~~v~iDY~g~~vt~~nfl~vL~G~~~~~~~~s~kvl~s~~~D~VFiY~t~HG~~  100 (413)
                      -++-.+=++|+++|+.   +.+.            .+.|.+.+.++|.--..       + . -...|.++|||.|||..
T Consensus        35 ~Da~~l~~~l~~lGF~---V~~~------------~nl~~~em~~~l~~~~~-------~-~-~~~~~~~vv~~~~HG~~   90 (245)
T d1f1ja_          35 KDAEALFKCFRSLGFD---VIVY------------NDCSCAKMQDLLKKASE-------E-D-HTNAACFACILLSHGEE   90 (245)
T ss_dssp             HHHHHHHHHHHHHTEE---EEEE------------ESCCHHHHHHHHHHHHH-------S-C-GGGEEEEEEEEESCEET
T ss_pred             HHHHHHHHHHHHCCCE---EEEe------------cCCCHHHHHHHHHHHHH-------H-h-ccCCceEEEEEeecccc
Confidence            5788888999999983   2222            35778888888873211       1 1 13358899999999999


Q ss_pred             CCcCCCCCCCCCHHHHHHHHHHHHHcC-CCceEEEeeeccccccccccc-----------------CCCCCcEEEEeccC
Q 015099          101 GVLGMPTSRYIYADELIDVLKKKHASG-NYKSLVFYLEACESGSIFEGL-----------------LPEGLNIYATTASN  162 (413)
Q Consensus       101 g~l~fp~~~~l~a~dL~~~l~~m~~~~-~y~~~v~~iEaC~SgSm~~~~-----------------l~~~~nv~~~tAs~  162 (413)
                      +.|.=.|+ .+..+++...+..-.-.. +-|--+|+++||.++.+-.++                 +|...++++.-|+.
T Consensus        91 ~~i~g~d~-~~~v~~~~~~~~~~~~~~L~~kpKif~iqaCrg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~li~~st~  169 (245)
T d1f1ja_          91 NVIYGKDG-VTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTV  169 (245)
T ss_dssp             TEEECSSS-EEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCBC---------------CBCTTTTEEEEESSC
T ss_pred             ceEecCCC-cEEcchhhhhccchhhHHHhhcchhhehhhhcCcccccceeecCCCCCccccccccccCCCCCeEEEEecC
Confidence            86554454 366766665553311111 112247889999987653221                 22223566666666


Q ss_pred             CCCccccccCCCCCCCCCCCcccchhhhhhhhhccccccccCccccHHHHHHHHHhhhcc
Q 015099          163 AEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS  222 (413)
Q Consensus       163 ~~EsSy~~~~~~~~~~~~~~~~t~lgD~fs~~wme~~~~~~~~~~Tl~~~f~~v~~~t~~  222 (413)
                      ++..||-.          +.-|+    +|.-.+++-... .-..+.|.+++..|.+++..
T Consensus       170 ~g~~a~~~----------~~~gS----~fi~~L~~~l~~-~~~~~~l~~il~~V~~~V~~  214 (245)
T d1f1ja_         170 PGYYSWRS----------PGRGS----WFVQALCSILEE-HGKDLEIMQILTRVNDRVAR  214 (245)
T ss_dssp             TTBCCEEE----------TTTEE----HHHHHHHHHHHH-HTTTSCHHHHHHHHHHHHHH
T ss_pred             CCceeccC----------CCCCC----HHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHH
Confidence            66555543          12233    444444443322 23456899999999988864

PyMOL of d1f1ja_