Citrus Sinensis ID: 015101
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | 2.2.26 [Sep-21-2011] | |||||||
| Q8S7E1 | 541 | Chlorophyllide a oxygenas | yes | no | 0.987 | 0.754 | 0.817 | 0.0 | |
| Q9MBA1 | 536 | Chlorophyllide a oxygenas | yes | no | 0.990 | 0.763 | 0.782 | 0.0 | |
| Q9ZWM5 | 645 | Chlorophyllide a oxygenas | N/A | no | 0.745 | 0.477 | 0.596 | 1e-115 | |
| Q9XJ38 | 463 | Chlorophyllide a oxygenas | N/A | no | 0.973 | 0.868 | 0.454 | 1e-104 | |
| Q9SK50 | 539 | Protein TIC 55, chloropla | no | no | 0.714 | 0.547 | 0.260 | 2e-23 | |
| O49931 | 553 | Protein TIC 55, chloropla | N/A | no | 0.716 | 0.535 | 0.253 | 5e-23 | |
| P12609 | 329 | Vanillate O-demethylase o | N/A | no | 0.520 | 0.653 | 0.248 | 7e-18 | |
| O05616 | 354 | Vanillate O-demethylase o | N/A | no | 0.496 | 0.579 | 0.288 | 1e-17 | |
| P94679 | 347 | Toluene-4-sulfonate monoo | no | no | 0.384 | 0.458 | 0.279 | 9e-15 | |
| Q44256 | 432 | 3-chlorobenzoate-3,4-diox | no | no | 0.397 | 0.379 | 0.288 | 2e-14 |
| >sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1 | Back alignment and function desciption |
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Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/411 (81%), Positives = 370/411 (90%), Gaps = 3/411 (0%)
Query: 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCAS- 59
++KELAELQE+LA+AH QVH+SE RV++ALDKLA ME LVNDRLLQD +S + C S
Sbjct: 124 LRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAECTSL 183
Query: 60 -PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 118
PSTS S +V K PR+SLNVSGPVQPYN LKNFW+PVAFS+DLKDDTMVP DCFEE
Sbjct: 184 APSTSSAS-RVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDCFEE 242
Query: 119 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 178
WVIFRGKDG PGCV NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST++
Sbjct: 243 QWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTKML 302
Query: 179 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 238
NV+I+SLPCFEQEGM+WIWPG++PP +TIP LLPPSGF IHAEIVMELP+EHGLLLDNLL
Sbjct: 303 NVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLDNLL 362
Query: 239 DLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKP 298
DLAHAPFTHTSTFAKGWSVPSLVKFLTP+SGLQGYWDPYPIDMEFRPPCMVLSTIGISKP
Sbjct: 363 DLAHAPFTHTSTFAKGWSVPSLVKFLTPSSGLQGYWDPYPIDMEFRPPCMVLSTIGISKP 422
Query: 299 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQV 358
GKLEG++T+QC+THLHQLH+CLPSSR KTRLLYRMSLDFA +KHVPFM LW HFAE+V
Sbjct: 423 GKLEGKSTKQCSTHLHQLHICLPSSRNKTRLLYRMSLDFAPWIKHVPFMHILWSHFAEKV 482
Query: 359 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPF 409
LNEDLRLVLGQQERM NGANVWN PV YDKLG+RYRLWRDA+E+G +LPF
Sbjct: 483 LNEDLRLVLGQQERMINGANVWNWPVSYDKLGIRYRLWRDAIERGVDRLPF 533
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Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a. Oryza sativa subsp. japonica (taxid: 39947) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 2EC: 2 |
| >sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2 SV=1 | Back alignment and function description |
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| >sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1 | Back alignment and function description |
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| >sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain ATCC 19151) GN=vanA PE=3 SV=1 | Back alignment and function description |
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| >sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain HR199 / DSM 7063) GN=vanA PE=3 SV=1 | Back alignment and function description |
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| >sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas testosteroni GN=cbaA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| 224066823 | 472 | predicted protein [Populus trichocarpa] | 0.995 | 0.870 | 0.871 | 0.0 | |
| 255545394 | 535 | chlorophyll synthase, putative [Ricinus | 0.997 | 0.770 | 0.856 | 0.0 | |
| 356552681 | 534 | PREDICTED: chlorophyllide a oxygenase, c | 0.990 | 0.765 | 0.860 | 0.0 | |
| 359492578 | 537 | PREDICTED: chlorophyllide a oxygenase, c | 0.995 | 0.765 | 0.854 | 0.0 | |
| 356509409 | 530 | PREDICTED: chlorophyllide a oxygenase, c | 0.995 | 0.775 | 0.856 | 0.0 | |
| 356549331 | 532 | PREDICTED: chlorophyllide a oxygenase, c | 0.990 | 0.768 | 0.855 | 0.0 | |
| 224082298 | 531 | predicted protein [Populus trichocarpa] | 0.990 | 0.770 | 0.865 | 0.0 | |
| 356515896 | 530 | PREDICTED: chlorophyllide a oxygenase, c | 0.995 | 0.775 | 0.854 | 0.0 | |
| 449465447 | 534 | PREDICTED: chlorophyllide a oxygenase, c | 0.990 | 0.765 | 0.821 | 0.0 | |
| 110289597 | 526 | chlorophyll a oxygenase, putative, expre | 0.987 | 0.775 | 0.817 | 0.0 |
| >gi|224066823|ref|XP_002302233.1| predicted protein [Populus trichocarpa] gi|222843959|gb|EEE81506.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/411 (87%), Positives = 384/411 (93%)
Query: 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASP 60
MKKELAELQ++LAQAHRQVHISEARVATALDKLAYME LVNDRLLQDR+ + DQ SP
Sbjct: 60 MKKELAELQDELAQAHRQVHISEARVATALDKLAYMEELVNDRLLQDRNQAEPDQESPSP 119
Query: 61 STSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPW 120
STS QSLD VK K PRK+LNVSGPVQPY+ RLKNFW+PVAFSTDLKDDTM+P DCFEEPW
Sbjct: 120 STSTQSLDTVKRKSPRKNLNVSGPVQPYHPRLKNFWYPVAFSTDLKDDTMIPIDCFEEPW 179
Query: 121 VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV 180
V+FRGKDG PGCV+NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST+L +V
Sbjct: 180 VLFRGKDGKPGCVRNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLDV 239
Query: 181 KIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDL 240
K+KSLPCFEQEGMIWIWPG +PP A++P L PP GF++HAEIVMELP+EHGLLLDNLLDL
Sbjct: 240 KVKSLPCFEQEGMIWIWPGSDPPAASLPSLQPPPGFQVHAEIVMELPVEHGLLLDNLLDL 299
Query: 241 AHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGK 300
AHAPFTHTSTFAKGW+VPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGK
Sbjct: 300 AHAPFTHTSTFAKGWTVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGK 359
Query: 301 LEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLN 360
LEGQ+TR+CATHLHQLHVCLPSSR+KTRLLYRMSLDFA VLKH PFM YLW+HFAEQVLN
Sbjct: 360 LEGQSTRECATHLHQLHVCLPSSRQKTRLLYRMSLDFAGVLKHFPFMHYLWKHFAEQVLN 419
Query: 361 EDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK 411
EDLRLVLGQQERM NGANVWN PV YDKLGVRYRLWRDA+E+GAKQLPF K
Sbjct: 420 EDLRLVLGQQERMINGANVWNWPVSYDKLGVRYRLWRDAVERGAKQLPFRK 470
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545394|ref|XP_002513757.1| chlorophyll synthase, putative [Ricinus communis] gi|223546843|gb|EEF48340.1| chlorophyll synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356552681|ref|XP_003544691.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|359492578|ref|XP_002284499.2| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Vitis vinifera] gi|302141810|emb|CBI19013.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356509409|ref|XP_003523442.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356549331|ref|XP_003543047.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224082298|ref|XP_002306638.1| predicted protein [Populus trichocarpa] gi|222856087|gb|EEE93634.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356515896|ref|XP_003526633.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449465447|ref|XP_004150439.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus] gi|449513335|ref|XP_004164299.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|110289597|gb|ABB48003.2| chlorophyll a oxygenase, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| TAIR|locus:2823671 | 536 | CH1 "CHLORINA 1" [Arabidopsis | 0.990 | 0.763 | 0.760 | 2.5e-177 | |
| TAIR|locus:2047329 | 539 | TIC55-II "translocon at the in | 0.731 | 0.560 | 0.244 | 4.1e-19 | |
| UNIPROTKB|Q4KB09 | 352 | vanA "Vanillate O-demethylase, | 0.261 | 0.306 | 0.345 | 1.4e-12 | |
| UNIPROTKB|Q48IV9 | 354 | vanA "Vanillate monooxygenase, | 0.259 | 0.302 | 0.330 | 5.8e-12 | |
| UNIPROTKB|Q4KAM4 | 363 | prnD "Aminopyrrolnitrin oxidas | 0.285 | 0.325 | 0.296 | 7.4e-09 | |
| TAIR|locus:2131406 | 559 | ACD1-LIKE "AT4G25650" [Arabido | 0.278 | 0.205 | 0.251 | 1.8e-08 | |
| UNIPROTKB|D5IGG0 | 378 | carAa "Carbazole 1,9a-dioxygen | 0.309 | 0.338 | 0.304 | 2.1e-08 | |
| TAIR|locus:2082122 | 537 | ACD1 "ACCELERATED CELL DEATH 1 | 0.259 | 0.199 | 0.311 | 4.1e-08 | |
| FB|FBgn0259697 | 429 | nvd "neverland" [Drosophila me | 0.484 | 0.466 | 0.267 | 5.9e-08 | |
| UNIPROTKB|F1NKZ9 | 409 | LOC427775 "Uncharacterized pro | 0.297 | 0.300 | 0.305 | 3.2e-07 |
| TAIR|locus:2823671 CH1 "CHLORINA 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
Identities = 311/409 (76%), Positives = 354/409 (86%)
Query: 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASP 60
+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL R + D+ +S
Sbjct: 126 VKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSSST 185
Query: 61 STSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPW 120
+ S LD K KSLNVSGPV PY+ LKNFW+PVAF+ DLK DTMVP +CFE+PW
Sbjct: 186 TASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQPW 245
Query: 121 VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV 180
VIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L V
Sbjct: 246 VIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKV 305
Query: 181 KIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGXXXXXXXXX 240
KIKSLPC EQEGMIWIWPGDEPP +P L PPSGF IHAE+VM+LP+EHG
Sbjct: 306 KIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDL 365
Query: 241 AHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGK 300
AHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWDPYPIDMEF+PPC+VLSTIGISKPGK
Sbjct: 366 AHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISKPGK 425
Query: 301 LEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLN 360
LEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSLDFA +LK++PFM++LWRHFAEQVLN
Sbjct: 426 LEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQVLN 485
Query: 361 EDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPF 409
EDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRLWR+A+++G +LPF
Sbjct: 486 EDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPF 534
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| TAIR|locus:2047329 TIC55-II "translocon at the inner envelope membrane of chloroplasts 55-II" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4KB09 vanA "Vanillate O-demethylase, oxygenase subunit" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q48IV9 vanA "Vanillate monooxygenase, oxygenase subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4KAM4 prnD "Aminopyrrolnitrin oxidase PrnD" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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| TAIR|locus:2131406 ACD1-LIKE "AT4G25650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D5IGG0 carAa "Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa" [Sphingomonas sp. (taxid:28214)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082122 ACD1 "ACCELERATED CELL DEATH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| FB|FBgn0259697 nvd "neverland" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NKZ9 LOC427775 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8S7E1 | CAO_ORYSJ | 1, ., 1, 4, ., 1, 3, ., 1, 2, 2 | 0.8175 | 0.9878 | 0.7541 | yes | no |
| Q9MBA1 | CAO_ARATH | 1, ., 1, 4, ., 1, 3, ., 1, 2, 2 | 0.7823 | 0.9903 | 0.7630 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.13.12 | 0.976 |
| 3rd Layer | 1.13.12.14 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 413 | |||
| PLN02281 | 536 | PLN02281, PLN02281, chlorophyllide a oxygenase | 0.0 | |
| cd04337 | 129 | cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o | 4e-84 | |
| PLN00095 | 394 | PLN00095, PLN00095, chlorophyllide a oxygenase; Pr | 1e-68 | |
| COG4638 | 367 | COG4638, HcaE, Phenylpropionate dioxygenase and re | 2e-32 | |
| cd03469 | 118 | cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o | 9e-32 | |
| cd03479 | 144 | cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem | 4e-28 | |
| cd03532 | 116 | cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem | 3e-26 | |
| cd04338 | 134 | cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L | 2e-24 | |
| pfam08417 | 91 | pfam08417, PaO, Pheophorbide a oxygenase | 2e-22 | |
| cd03480 | 138 | cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron | 3e-18 | |
| pfam00355 | 99 | pfam00355, Rieske, Rieske [2Fe-2S] domain | 8e-18 | |
| cd03467 | 98 | cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster | 2e-17 | |
| cd03548 | 136 | cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-hem | 1e-13 | |
| cd03537 | 123 | cd03537, Rieske_RO_Alpha_PrnD, This alignment mode | 2e-13 | |
| PLN02518 | 539 | PLN02518, PLN02518, pheophorbide a oxygenase | 5e-13 | |
| cd03531 | 115 | cd03531, Rieske_RO_Alpha_KSH, The alignment model | 2e-10 | |
| COG2146 | 106 | COG2146, {NirD}, Ferredoxin subunits of nitrite re | 2e-08 | |
| cd03478 | 95 | cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f | 2e-08 | |
| cd03542 | 123 | cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iro | 2e-07 | |
| cd08878 | 196 | cd08878, RHO_alpha_C_DMO-like, C-terminal catalyti | 4e-07 | |
| cd03535 | 123 | cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron | 7e-07 | |
| cd03541 | 118 | cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron | 8e-07 | |
| cd03528 | 98 | cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro | 3e-06 | |
| TIGR03229 | 433 | TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenas | 1e-05 | |
| cd00680 | 188 | cd00680, RHO_alpha_C, C-terminal catalytic domain | 3e-05 | |
| cd03538 | 146 | cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme ir | 9e-05 | |
| cd03545 | 150 | cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-he | 3e-04 | |
| cd03472 | 128 | cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-hem | 4e-04 | |
| cd03530 | 98 | cd03530, Rieske_NirD_small_Bacillus, Small subunit | 4e-04 | |
| cd03539 | 129 | cd03539, Rieske_RO_Alpha_S5H, This alignment model | 4e-04 | |
| TIGR03228 | 438 | TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxyge | 7e-04 |
| >gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase | Back alignment and domain information |
|---|
Score = 679 bits (1753), Expect = 0.0
Identities = 320/409 (78%), Positives = 363/409 (88%)
Query: 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASP 60
+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL R + D+ +S
Sbjct: 126 VKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSSST 185
Query: 61 STSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPW 120
+ S LD K KSLNVSGPV PY+ LKNFW+PVAF+ DLK DTMVP +CFE+PW
Sbjct: 186 TASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQPW 245
Query: 121 VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV 180
VIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L V
Sbjct: 246 VIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKV 305
Query: 181 KIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDL 240
KIKSLPC EQEGMIWIWPGDEPP +P L PPSGF IHAE+VM+LP+EHGLLLDNLLDL
Sbjct: 306 KIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDL 365
Query: 241 AHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGK 300
AHAPFTHTSTFAKGWSVPSLVKFLTP SGLQGYWDPYPIDMEF+PPC+VLSTIGISKPGK
Sbjct: 366 AHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISKPGK 425
Query: 301 LEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLN 360
LEG++T+QCATHLHQLHVCLPSS+ KTRLLYRMSLDFA +LK++PFM++LWRHFAEQVLN
Sbjct: 426 LEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQVLN 485
Query: 361 EDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPF 409
EDLRLVLGQQERM NGAN+WNLPV YDKLGVRYRLWR+A+++G +LPF
Sbjct: 486 EDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPF 534
|
Length = 536 |
| >gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
| >gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
| >gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
| >gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
| >gnl|CDD|219832 pfam08417, PaO, Pheophorbide a oxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
| >gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain | Back alignment and domain information |
|---|
| >gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
| >gnl|CDD|239617 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
| >gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
| >gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
| >gnl|CDD|239615 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|176887 cd08878, RHO_alpha_C_DMO-like, C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >gnl|CDD|239609 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239614 cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
| >gnl|CDD|132273 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >gnl|CDD|176852 cd00680, RHO_alpha_C, C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >gnl|CDD|239612 cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239616 cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|239554 cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) | Back alignment and domain information |
|---|
| >gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
| >gnl|CDD|239613 cd03539, Rieske_RO_Alpha_S5H, This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) | Back alignment and domain information |
|---|
| >gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| PLN02281 | 536 | chlorophyllide a oxygenase | 100.0 | |
| PLN00095 | 394 | chlorophyllide a oxygenase; Provisional | 100.0 | |
| PLN02518 | 539 | pheophorbide a oxygenase | 100.0 | |
| COG4638 | 367 | HcaE Phenylpropionate dioxygenase and related ring | 100.0 | |
| TIGR03228 | 438 | anthran_1_2_A anthranilate 1,2-dioxygenase, large | 100.0 | |
| TIGR03229 | 433 | benzo_1_2_benA benzoate 1,2-dioxygenase, large sub | 100.0 | |
| cd04337 | 129 | Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) | 99.97 | |
| cd03545 | 150 | Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox | 99.97 | |
| cd03479 | 144 | Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy | 99.97 | |
| cd03537 | 123 | Rieske_RO_Alpha_PrnD This alignment model represen | 99.97 | |
| cd04338 | 134 | Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate | 99.97 | |
| cd03531 | 115 | Rieske_RO_Alpha_KSH The alignment model represents | 99.96 | |
| cd03480 | 138 | Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase | 99.96 | |
| cd03532 | 116 | Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy | 99.96 | |
| cd03538 | 146 | Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena | 99.96 | |
| cd03541 | 118 | Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase | 99.96 | |
| cd03539 | 129 | Rieske_RO_Alpha_S5H This alignment model represent | 99.95 | |
| cd03548 | 136 | Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy | 99.95 | |
| cd03472 | 128 | Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy | 99.95 | |
| cd03469 | 118 | Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( | 99.94 | |
| cd03535 | 123 | Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase | 99.94 | |
| cd03536 | 123 | Rieske_RO_Alpha_DTDO This alignment model represen | 99.94 | |
| cd03542 | 123 | Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas | 99.93 | |
| cd03528 | 98 | Rieske_RO_ferredoxin Rieske non-heme iron oxygenas | 99.92 | |
| cd03474 | 108 | Rieske_T4moC Toluene-4-monooxygenase effector prot | 99.92 | |
| cd03530 | 98 | Rieske_NirD_small_Bacillus Small subunit of nitrit | 99.92 | |
| TIGR02377 | 101 | MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE | 99.91 | |
| cd03529 | 103 | Rieske_NirD Assimilatory nitrite reductase (NirD) | 99.9 | |
| TIGR02378 | 105 | nirD_assim_sml nitrite reductase [NAD(P)H], small | 99.9 | |
| cd03478 | 95 | Rieske_AIFL_N AIFL (apoptosis-inducing factor like | 99.9 | |
| PRK09965 | 106 | 3-phenylpropionate dioxygenase ferredoxin subunit; | 99.9 | |
| PF00355 | 97 | Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 | 99.86 | |
| PF13806 | 104 | Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A | 99.86 | |
| cd03467 | 98 | Rieske Rieske domain; a [2Fe-2S] cluster binding d | 99.85 | |
| PRK09511 | 108 | nirD nitrite reductase small subunit; Provisional | 99.85 | |
| cd03477 | 91 | Rieske_YhfW_C YhfW family, C-terminal Rieske domai | 99.84 | |
| COG2146 | 106 | {NirD} Ferredoxin subunits of nitrite reductase an | 99.84 | |
| cd03476 | 126 | Rieske_ArOX_small Small subunit of Arsenite oxidas | 99.79 | |
| cd08878 | 196 | RHO_alpha_C_DMO-like C-terminal catalytic domain o | 99.76 | |
| cd03471 | 126 | Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co | 99.76 | |
| TIGR02694 | 129 | arsenite_ox_S arsenite oxidase, small subunit. Thi | 99.71 | |
| cd03470 | 126 | Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co | 99.69 | |
| cd03473 | 107 | Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha | 99.68 | |
| cd00680 | 188 | RHO_alpha_C C-terminal catalytic domain of the oxy | 99.67 | |
| cd08885 | 190 | RHO_alpha_C_1 C-terminal catalytic domain of the o | 99.6 | |
| PRK13474 | 178 | cytochrome b6-f complex iron-sulfur subunit; Provi | 99.58 | |
| cd08887 | 185 | RHO_alpha_C_3 C-terminal catalytic domain of the o | 99.55 | |
| cd08883 | 175 | RHO_alpha_C_CMO-like C-terminal catalytic domain o | 99.54 | |
| cd08884 | 205 | RHO_alpha_C_GbcA-like C-terminal catalytic domain | 99.5 | |
| cd08886 | 182 | RHO_alpha_C_2 C-terminal catalytic domain of the o | 99.5 | |
| TIGR01416 | 174 | Rieske_proteo ubiquinol-cytochrome c reductase, ir | 99.45 | |
| PF00848 | 209 | Ring_hydroxyl_A: Ring hydroxylating alpha subunit | 99.36 | |
| cd03475 | 171 | Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma | 99.25 | |
| cd08880 | 222 | RHO_alpha_C_ahdA1c-like C-terminal catalytic domai | 98.98 | |
| PF08417 | 92 | PaO: Pheophorbide a oxygenase; InterPro: IPR013626 | 98.96 | |
| COG0723 | 177 | QcrA Rieske Fe-S protein [Energy production and co | 98.91 | |
| cd08882 | 243 | RHO_alpha_C_MupW-like C-terminal catalytic domain | 98.85 | |
| cd08879 | 237 | RHO_alpha_C_AntDO-like C-terminal catalytic domain | 98.7 | |
| TIGR03171 | 321 | soxL2 Rieske iron-sulfur protein SoxL2. This iron- | 98.62 | |
| cd08881 | 206 | RHO_alpha_C_NDO-like C-terminal catalytic domain o | 98.61 | |
| KOG1671 | 210 | consensus Ubiquinol cytochrome c reductase, subuni | 98.56 | |
| PF11723 | 240 | Aromatic_hydrox: Homotrimeric ring hydroxylase; In | 98.38 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 94.16 |
| >PLN02281 chlorophyllide a oxygenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-84 Score=660.22 Aligned_cols=410 Identities=77% Similarity=1.348 Sum_probs=351.9
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHHhhhhhhhcCCCCCCc-ccccCCCCCCchhhhhhhccCCcccc
Q 015101 1 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGT-DQTCASPSTSKQSLDIVKGKLPRKSL 79 (413)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~ 79 (413)
||||||+|||||+|||+|||+||||||++|+||++||+|+|++||+|++.++. .|+|+.++++ ...+.+.++..++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (536)
T PLN02281 126 VKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSSSTTASA-VELDREKTNTGAKSL 204 (536)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCCCccccccccccCCcCcc-hhhhhhhcccccccc
Confidence 68999999999999999999999999999999999999999999998877755 6776666655 456677777888999
Q ss_pred cccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCC
Q 015101 80 NVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYH 159 (413)
Q Consensus 80 ~~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyH 159 (413)
+++++++++..++++.||+||.++||++|+++.++++|++|+|||+.+|+++|+.|+|||||++|+.|.++++.|+||||
T Consensus 205 ~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYH 284 (536)
T PLN02281 205 NVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYH 284 (536)
T ss_pred cccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCccccCCcccccccccccceeeeCCeEEEcCCCCCCCCCCCCCCCCCCceEeEEEEEEeecChhhhhhccCC
Q 015101 160 GWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLD 239 (413)
Q Consensus 160 gw~fd~~G~~~~~P~~~~~~~~l~~~~v~~~~G~I~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 239 (413)
||+||.+|+|+.+|+.+..+.++++|||+|++|+||||++++++.+.+|.+..+.++.......+++++||++++||++|
T Consensus 285 GW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlVwV~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD 364 (536)
T PLN02281 285 GWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLD 364 (536)
T ss_pred CCEECCCCCEeeCCCCccccCCcceEeEEEECCEEEEEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccc
Confidence 99999999999999876556889999999999999999987654445565554446665555678899999999999999
Q ss_pred CcccCccCccccccCCCCCceeeeecCCCCCCccccCCCccceecCCeEEEEEeeeeCCCCcCCCCcccccceeEEEEEe
Q 015101 240 LAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVC 319 (413)
Q Consensus 240 ~~H~~~~H~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 319 (413)
+||++|+|.++++..+..+..+....+...+.++|...+..++|.+||++...+++..+|...+......+.++..++.|
T Consensus 365 ~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~~~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~ 444 (536)
T PLN02281 365 LAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYWDPYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVC 444 (536)
T ss_pred cccccccCcccccCcccCCceeEEecccCCCCcccccCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEE
Confidence 99999999999998766665555444444445566554556889999999888888777764433333444567789999
Q ss_pred ecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhHHHhhHHHHHHHHhhhccCCCCccccccCCCHHHHHHHHHHHH
Q 015101 320 LPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 399 (413)
Q Consensus 320 ~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~~ED~~ile~qq~~l~~~~~~~~~~~~~D~~~v~yRrwl~~ 399 (413)
||+++++||+||.+.+||..+.+..++...++..+...+|.||+.|+|+||+++......+++++++|+++++||||+++
T Consensus 445 TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~~~~vF~ED~~iLEaQQ~~i~~~~~~~~l~l~aD~~~v~~RRWl~~ 524 (536)
T PLN02281 445 LPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNA 524 (536)
T ss_pred EECCCCeEEEEEEecccCccccccccchHHHHHHHhhHhhHhHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999977643444444546667889999999999999999998777888999999999999999999
Q ss_pred HHcCCCCCCCCC
Q 015101 400 LEKGAKQLPFMK 411 (413)
Q Consensus 400 l~~g~~~~p~~~ 411 (413)
+++|.+++||+.
T Consensus 525 ~~~~~~~~pf~~ 536 (536)
T PLN02281 525 VDRGDDKLPFSG 536 (536)
T ss_pred hhcccCCCCCCC
Confidence 999999999984
|
|
| >PLN00095 chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
| >PLN02518 pheophorbide a oxygenase | Back alignment and domain information |
|---|
| >COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
| >cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins | Back alignment and domain information |
|---|
| >cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
| >cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
| >cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
| >cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
| >cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
| >cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) | Back alignment and domain information |
|---|
| >cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) | Back alignment and domain information |
|---|
| >cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
| >cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) | Back alignment and domain information |
|---|
| >cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
| >cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
| >TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily | Back alignment and domain information |
|---|
| >cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium | Back alignment and domain information |
|---|
| >TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit | Back alignment and domain information |
|---|
| >cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
| >PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
| >PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types | Back alignment and domain information |
|---|
| >PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A | Back alignment and domain information |
|---|
| >cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
| >PRK09511 nirD nitrite reductase small subunit; Provisional | Back alignment and domain information |
|---|
| >cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain | Back alignment and domain information |
|---|
| >COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate | Back alignment and domain information |
|---|
| >cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >TIGR02694 arsenite_ox_S arsenite oxidase, small subunit | Back alignment and domain information |
|---|
| >cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
| >cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit | Back alignment and domain information |
|---|
| >PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols [] | Back alignment and domain information |
|---|
| >cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp | Back alignment and domain information |
|---|
| >PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO) | Back alignment and domain information |
|---|
| >COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 | Back alignment and domain information |
|---|
| >cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium | Back alignment and domain information |
|---|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 413 | ||||
| 3gke_A | 349 | Crystal Structure Of Dicamba Monooxygenase Length = | 6e-16 | ||
| 3gkq_A | 389 | Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr | 3e-09 | ||
| 3gcf_A | 394 | Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr | 8e-08 | ||
| 1ww9_A | 392 | Crystal Structure Of The Terminal Oxygenase Compone | 2e-06 | ||
| 3n0q_A | 409 | Crystal Structure Of A Putative Aromatic-Ring Hydro | 2e-06 | ||
| 3vca_A | 412 | Quaternary Ammonium Oxidative Demethylation: X-Ray | 4e-06 | ||
| 2zyl_A | 386 | Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl | 5e-06 |
| >pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349 | Back alignment and structure |
|
| >pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Novosphingobium Sp. Ka1 Length = 389 | Back alignment and structure |
| >pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Nocardioides Aromaticivorans Ic177 Length = 394 | Back alignment and structure |
| >pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase System Catalyzing The Novel Angular Dioxygenation For Carbazole And Dioxin Length = 392 | Back alignment and structure |
| >pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring Hydroxylating Dioxygenase (Tm1040_3219) From Silicibacter Sp. Tm1040 At 1 Resolution Length = 409 | Back alignment and structure |
| >pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray Crystallographic, Resonance Raman And Uv-Visible Spectroscopic Analysis Of A Rieske- Type Demethylase Length = 412 | Back alignment and structure |
| >pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349 | Back alignment and structure |
|---|
Score = 256 bits (655), Expect = 1e-82
Identities = 76/355 (21%), Positives = 132/355 (37%), Gaps = 56/355 (15%)
Query: 92 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 151
++N W+ A +L + + + P ++R DG+ + + C HR PL G +
Sbjct: 5 VRNAWYVAALPEELSE-KPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVN 63
Query: 152 GRIQCPYHGWEYSTDGKCEKMPSTQ---LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 208
G +QCPYHG E+ G+C P ++ ++S P E++ +IWIWPGD P
Sbjct: 64 GHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALAD--P 121
Query: 209 CLLPPSGFEIHAE-----IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA----------- 252
+P G + + + LL+DNL+DL HA + H +
Sbjct: 122 GAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVHRANAQTDAFDRLEREV 181
Query: 253 --------------KGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKP 298
G + KFL A+ W D+ + +L+ I ++
Sbjct: 182 IVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAW----NDIRWNKVSAMLNFIAVAPE 237
Query: 299 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQ- 357
G ++ + H H+ P + + S +F P M + R + Q
Sbjct: 238 GT-----PKEQSIHSRGTHILTPETEASCHYFFGSSRNFG---IDDPEMDGVLRSWQAQA 289
Query: 358 VLNEDLRLVLGQQERMNNGANVWN---LPVGYDKLGVRYRLWRDAL---EKGAKQ 406
++ ED +V + R + D+ VR + L E +
Sbjct: 290 LVKEDKVVVEAIERRRAY-VEANGIRPAMLSCDEAAVRVSREIEKLEQLEAARLE 343
|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394 | Back alignment and structure |
|---|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389 | Back alignment and structure |
|---|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386 | Back alignment and structure |
|---|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446 | Back alignment and structure |
|---|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392 | Back alignment and structure |
|---|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111 | Back alignment and structure |
|---|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106 | Back alignment and structure |
|---|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108 | Back alignment and structure |
|---|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103 | Back alignment and structure |
|---|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115 | Back alignment and structure |
|---|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470 | Back alignment and structure |
|---|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454 | Back alignment and structure |
|---|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447 | Back alignment and structure |
|---|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412 | Back alignment and structure |
|---|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409 | Back alignment and structure |
|---|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 | Back alignment and structure |
|---|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457 | Back alignment and structure |
|---|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157 | Back alignment and structure |
|---|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112 | Back alignment and structure |
|---|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460 | Back alignment and structure |
|---|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113 | Back alignment and structure |
|---|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130 | Back alignment and structure |
|---|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| 3gke_A | 349 | DDMC; rieske cluster, non-heme mononuclear iron, o | 100.0 | |
| 3n0q_A | 409 | Putative aromatic-ring hydroxylating dioxygenase; | 100.0 | |
| 3vca_A | 412 | Ring-hydroxylating dioxygenase; rieske-type, monon | 100.0 | |
| 1z01_A | 446 | 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen | 100.0 | |
| 2zyl_A | 386 | Possible oxidoreductase; KSHA, cholesterol, rieske | 100.0 | |
| 2de6_A | 392 | Terminal oxygenase component of carbazole; electro | 100.0 | |
| 3gcf_A | 394 | Terminal oxygenase component of carbazole 1,9A- di | 100.0 | |
| 3gkq_A | 389 | Terminal oxygenase component of carbazole 1,9A- di | 100.0 | |
| 2gbw_A | 454 | Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy | 100.0 | |
| 2bmo_A | 447 | Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni | 100.0 | |
| 2b1x_A | 470 | Naphthalene dioxygenase large subunit; rieske non- | 100.0 | |
| 3gzx_A | 457 | Biphenyl dioxygenase subunit alpha; rieskie, non-h | 100.0 | |
| 1uli_A | 460 | Biphenyl dioxygenase large subunit; alpha3 BETA3 h | 100.0 | |
| 2qpz_A | 103 | Naphthalene 1,2-dioxygenase system ferredoxin subu | 99.95 | |
| 1fqt_A | 112 | Rieske-type ferredoxin of biphenyl dioxygenase; 2F | 99.95 | |
| 2i7f_A | 108 | Ferredoxin component of dioxygenase; rieske ferred | 99.95 | |
| 1vm9_A | 111 | Toluene-4-monooxygenase system protein C; structur | 99.95 | |
| 2de6_D | 115 | Ferredoxin component of carbazole; electron transf | 99.95 | |
| 3dqy_A | 106 | Toluene 1,2-dioxygenase system ferredoxin subunit; | 99.94 | |
| 3gce_A | 121 | Ferredoxin component of carbazole 1,9A- dioxygenas | 99.94 | |
| 3c0d_A | 119 | Putative nitrite reductase NADPH (small subunit) o | 99.94 | |
| 2jo6_A | 113 | Nitrite reductase [NAD(P)H] small subunit; all bet | 99.94 | |
| 2jza_A | 130 | Nitrite reductase [NAD(P)H] small subunit; ISP dom | 99.93 | |
| 4aiv_A | 119 | Probable nitrite reductase [NAD(P)H] small subuni; | 99.93 | |
| 3d89_A | 157 | Rieske domain-containing protein; CAsp target, rie | 99.93 | |
| 4aay_B | 175 | AROB; oxidoreductase, rieske, iron sulfur, molybdo | 99.89 | |
| 1rie_A | 129 | Rieske iron-sulfur protein; oxidoreductase, cytoch | 99.87 | |
| 1rfs_A | 139 | Rieske protein; iron-sulfur protein, electron tran | 99.85 | |
| 1g8k_B | 133 | Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, | 99.85 | |
| 3azc_A | 133 | Cytochrome B6-F complex iron-sulfur subunit; riesk | 99.7 | |
| 3cx5_E | 185 | Cytochrome B-C1 complex subunit rieske, mitochondr | 99.8 | |
| 2qjy_C | 187 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.78 | |
| 1pp9_E | 196 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU | 99.78 | |
| 2nwf_A | 141 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.78 | |
| 1nyk_A | 165 | Rieske iron-sulfur protein; beta barrel, iron sulf | 99.76 | |
| 1vf5_D | 179 | Rieske iron-sulfur protein; photosynthesis, membra | 99.74 | |
| 1jm1_A | 204 | Rieske iron-sulfur protein SOXF; electron transpor | 99.64 |
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-54 Score=431.69 Aligned_cols=308 Identities=24% Similarity=0.430 Sum_probs=236.3
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEEecCCCCCCCCCCCCcccCCeEecCCCCeEEecCCC
Q 015101 89 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 168 (413)
Q Consensus 89 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvv~R~~~G~i~a~~n~CpHrg~~L~~g~~~~~~l~CpyHgw~fd~~G~ 168 (413)
..++++.|++||+++|| +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.||+
T Consensus 2 ~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 2 ATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred CcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCC
Confidence 35678999999999999 89999999999999999999999999999999999999999998999999999999999999
Q ss_pred ccccCC-cc--cccccccccceeeeCCeEEEcCCCCC-CC-CCCCCCC--CCCCceEeEEEEEEeecChhhhhhccCCCc
Q 015101 169 CEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLA 241 (413)
Q Consensus 169 ~~~~P~-~~--~~~~~l~~~~v~~~~G~I~v~~~~~~-~~-~~~p~~~--~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~ 241 (413)
|+.+|+ .. ....+|++|||++++|+||||+++++ +. ..+|++. +..++.+. ...++++||||+++||++|+|
T Consensus 81 ~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~ 159 (349)
T 3gke_A 81 CVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLG 159 (349)
T ss_dssp EEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGG
T ss_pred ccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhccccc
Confidence 999995 22 13578999999999999999998754 21 1245442 23567655 456789999999999999999
Q ss_pred ccCccCccccccCCC--CCceeeeec----------CCCCCCcccc------CCC----ccceecCCeEEEEEeeeeCCC
Q 015101 242 HAPFTHTSTFAKGWS--VPSLVKFLT----------PASGLQGYWD------PYP----IDMEFRPPCMVLSTIGISKPG 299 (413)
Q Consensus 242 H~~~~H~~t~~~~~~--~~~~~~~~~----------~~~~~~~~~~------~~~----~~~~f~~P~~~~~~~~~~~~g 299 (413)
|++++|+++++.... ++..++... ... ...+|. ... ..++|.+|+++...+++..+|
T Consensus 160 H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~g 238 (349)
T 3gke_A 160 HAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGT-PSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPEG 238 (349)
T ss_dssp GHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEEC-CCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCC-CChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccCC
Confidence 999999999986532 122111100 000 001111 001 246788999987777776655
Q ss_pred CcCCCCcccccceeEEEEEeecCCCCcEEEEeeeecchhhhccCchhHHHHHHHHHhHHH-hhHHHHHHHHhhhccCCC-
Q 015101 300 KLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA- 377 (413)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~P~s~~~tr~~~~~~~~~~~~~~~~p~~~~~~~~~~~~V~-~ED~~ile~qq~~l~~~~- 377 (413)
.. ...+.++..+++|+|+++++||++|.+++||..++ +.+...+..+..+|| +||+.|||+||+++.+.+
T Consensus 239 ~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d---~~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~~ 310 (349)
T 3gke_A 239 TP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDD---PEMDGVLRSWQAQALVKEDKVVVEAIERRRAYVEA 310 (349)
T ss_dssp SC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTC---HHHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHHH
T ss_pred CC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCc---hhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCCc
Confidence 31 12234567789999999999999999999987543 233445566788898 999999999999987632
Q ss_pred -CccccccCCCHHHHHHHHHHHHH-HcCCCCC
Q 015101 378 -NVWNLPVGYDKLGVRYRLWRDAL-EKGAKQL 407 (413)
Q Consensus 378 -~~~~~~~~~D~~~v~yRrwl~~l-~~g~~~~ 407 (413)
...++++++|+++++||||++++ +++..++
T Consensus 311 ~~~~~~~~~~D~~~v~~Rr~l~~l~~~e~~~~ 342 (349)
T 3gke_A 311 NGIRPAMLSCDEAAVRVSREIEKLEQLEAARL 342 (349)
T ss_dssp TTCCCCCCGGGHHHHHHHHHHHHHHHHHHTC-
T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHhh
Confidence 22358999999999999999877 4444443
|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} | Back alignment and structure |
|---|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A | Back alignment and structure |
|---|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* | Back alignment and structure |
|---|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* | Back alignment and structure |
|---|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} | Back alignment and structure |
|---|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A | Back alignment and structure |
|---|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* | Back alignment and structure |
|---|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A | Back alignment and structure |
|---|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* | Back alignment and structure |
|---|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A | Back alignment and structure |
|---|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} | Back alignment and structure |
|---|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* | Back alignment and structure |
|---|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} | Back alignment and structure |
|---|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A | Back alignment and structure |
|---|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* | Back alignment and structure |
|---|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* | Back alignment and structure |
|---|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} | Back alignment and structure |
|---|
| >4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} | Back alignment and structure |
|---|
| >1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 | Back alignment and structure |
|---|
| >1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* | Back alignment and structure |
|---|
| >1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* | Back alignment and structure |
|---|
| >3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
| >3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* | Back alignment and structure |
|---|
| >2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* | Back alignment and structure |
|---|
| >1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... | Back alignment and structure |
|---|
| >2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A | Back alignment and structure |
|---|
| >1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A | Back alignment and structure |
|---|
| >1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* | Back alignment and structure |
|---|
| >1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 413 | ||||
| d1z01a1 | 148 | b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m | 3e-25 | |
| d2de6a1 | 142 | b.33.1.2 (A:1-142) Terminal oxygenase component of | 1e-24 | |
| d1vm9a_ | 109 | b.33.1.1 (A:) Toluene-4-monooxygenase system prote | 2e-18 | |
| d1fqta_ | 109 | b.33.1.1 (A:) Rieske-type ferredoxin associated wi | 6e-18 | |
| d1rfsa_ | 127 | b.33.1.1 (A:) ISP subunit from chloroplast cytochr | 1e-16 | |
| d2jzaa1 | 122 | b.33.1.3 (A:1-122) NADH-nitrite reductase small su | 1e-13 | |
| d2jo6a1 | 108 | b.33.1.3 (A:1-108) NADH-nitrite reductase small su | 8e-13 | |
| d2e74d1 | 134 | b.33.1.1 (D:46-179) ISP subunit from the cytochrom | 9e-13 | |
| d3c0da1 | 108 | b.33.1.3 (A:4-111) NADH-nitrite reductase small su | 6e-12 | |
| d1ulia1 | 154 | b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub | 9e-11 | |
| d1g8kb_ | 133 | b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc | 2e-09 | |
| d2bmoa1 | 150 | b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha | 9e-09 | |
| d1nyka_ | 156 | b.33.1.1 (A:) Soluble Rieske protein {Thermus ther | 1e-08 | |
| d2b1xa1 | 162 | b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp | 3e-07 | |
| d1jm1a_ | 202 | b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S | 0.002 | |
| d1riea_ | 127 | b.33.1.1 (A:) ISP subunit of the mitochondrial cyt | 0.003 |
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO species: Pseudomonas putida [TaxId: 303]
Score = 98.3 bits (244), Expect = 3e-25
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 12/134 (8%)
Query: 86 QPY---NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 142
QPY N W+P F+ +L++D + P V+ R +G +++ C HR
Sbjct: 16 QPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGV 74
Query: 143 PLHLG--SVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-----LRNVKIKSLPCFEQEGMIW 195
L + I C YHG+ + + + + + P E GMI+
Sbjct: 75 RLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIF 134
Query: 196 IWPG-DEPPTATIP 208
++ D+ P +P
Sbjct: 135 VFVREDDFPDEDVP 148
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142 | Back information, alignment and structure |
|---|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 | Back information, alignment and structure |
|---|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109 | Back information, alignment and structure |
|---|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 | Back information, alignment and structure |
|---|
| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Length = 122 | Back information, alignment and structure |
|---|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134 | Back information, alignment and structure |
|---|
| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Length = 108 | Back information, alignment and structure |
|---|
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154 | Back information, alignment and structure |
|---|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 | Back information, alignment and structure |
|---|
| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150 | Back information, alignment and structure |
|---|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162 | Back information, alignment and structure |
|---|
| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202 | Back information, alignment and structure |
|---|
| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Length = 127 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| d1ulia1 | 154 | Biphenyl dioxygenase large subunit BphA1, N-termin | 100.0 | |
| d2b1xa1 | 162 | Naphthalene 1,2-dioxygenase alpha subunit, N-domai | 99.98 | |
| d2bmoa1 | 150 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 99.98 | |
| d2de6a1 | 142 | Terminal oxygenase component of carbazole CarAa {J | 99.97 | |
| d1z01a1 | 148 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.96 | |
| d2jzaa1 | 122 | NADH-nitrite reductase small subunit NirD {Erwinia | 99.93 | |
| d1vm9a_ | 109 | Toluene-4-monooxygenase system protein C, TmoC {Ps | 99.93 | |
| d2jo6a1 | 108 | NADH-nitrite reductase small subunit NirD {Escheri | 99.91 | |
| d1fqta_ | 109 | Rieske-type ferredoxin associated with biphenyl di | 99.91 | |
| d3c0da1 | 108 | NADH-nitrite reductase small subunit NirD {Vibrio | 99.9 | |
| d1rfsa_ | 127 | ISP subunit from chloroplast cytochrome bf complex | 99.78 | |
| d1g8kb_ | 133 | Arsenite oxidase Rieske subunit {Alcaligenes faeca | 99.74 | |
| d2e74d1 | 134 | ISP subunit from the cytochrome b6f complex, solub | 99.72 | |
| d1nyka_ | 156 | Soluble Rieske protein {Thermus thermophilus [TaxI | 99.61 | |
| d3cx5e1 | 129 | ISP subunit of the mitochondrial cytochrome bc1-co | 99.47 | |
| d1riea_ | 127 | ISP subunit of the mitochondrial cytochrome bc1-co | 99.4 | |
| d1z01a2 | 279 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.27 | |
| d1jm1a_ | 202 | Rieske protein II (SoxF) {Archaeon Sulfolobus acid | 99.09 | |
| d2b1xa2 | 279 | Naphthalene 1,2-dioxygenase alpha subunit, C-domai | 98.06 | |
| d2bmoa2 | 287 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 97.96 | |
| d2de6a2 | 242 | Terminal oxygenase component of carbazole CarAa {J | 97.8 | |
| d1ulia2 | 281 | Biphenyl dioxygenase large subunit BphA1, C-termin | 97.73 | |
| d1wqla2 | 279 | Large subunit of cumene dioxygenase cumA1 {Pseudom | 97.48 |
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]
Probab=100.00 E-value=1.5e-33 Score=246.70 Aligned_cols=128 Identities=19% Similarity=0.291 Sum_probs=116.5
Q ss_pred ccCCCCCCchhhhhhhccCCcccccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEEe
Q 015101 56 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 134 (413)
Q Consensus 56 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~~~~~g~~vvv~R~~~G~i~a~~ 134 (413)
+++..|+|+++|+.|+++||+ +.|++||+++||+ +|+++++++++++|+|+|+.+|+++||.
T Consensus 17 l~~~~Y~~~~~~~~E~~~if~-----------------~~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~~~g~i~af~ 79 (154)
T d1ulia1 17 LDPRIYTDEALYEQELERIFG-----------------RSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFL 79 (154)
T ss_dssp ECGGGGTCHHHHHHHHHHTTT-----------------TSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred CCHHHcCCHHHHHHHHHHHhc-----------------cCCEEEEEhhhCCCCcceeeeecCCcceeEEeecccceeeee
Confidence 677899999999999999986 5699999999997 6999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCc-ccCCeEecCCCCeEEecCCCccccCCcc-------cccccccccceeeeCCeEEEcCCC
Q 015101 135 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGD 200 (413)
Q Consensus 135 n~CpHrg~~L~~g~-~~~~~l~CpyHgw~fd~~G~~~~~P~~~-------~~~~~l~~~~v~~~~G~I~v~~~~ 200 (413)
|+|||||++|+.+. ++++.|+||||||+|+.+|+|+.+|..+ ....+|+.++|.+++|+|||++++
T Consensus 80 N~C~HRG~~L~~~~~g~~~~l~CpYHgW~f~~~G~~~~iP~~~~~~~~~~~~~~~L~~~~v~~~~G~Ifv~~d~ 153 (154)
T d1ulia1 80 NQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDA 153 (154)
T ss_dssp SCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCT
T ss_pred cccccCCceeeecCCCccceEEeeeceeEEecCCccccCCcccccCCCCChHHCCCeEEeEEEECCEEEEEeCC
Confidence 99999999999754 5778999999999999999999999643 224678999999999999999965
|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
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| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
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| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
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| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
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| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} | Back information, alignment and structure |
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| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} | Back information, alignment and structure |
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| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
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| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
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| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} | Back information, alignment and structure |
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| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
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| >d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
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| >d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
|---|
| >d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
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| >d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
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| >d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
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