Citrus Sinensis ID: 015104

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNKITEDGSHSQAVQGLIIR
ccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHccccEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccc
ccEEEccccHHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHHccccEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccEEc
mttvvptseedpaLAVVRFTSelawadagpeAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFskvsdkdlECIFTVICNlvtkpesldEVHEMTKLISGkiiqqpndkpaMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATfsgedahtmDEAKEEAVRTIIEFvkspdmfqcdlldmpaigqlendAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVdlgsnesgqipyglikdtlqiNNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATnkitedgshsqAVQGLIIR
mttvvptseedpalaVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISgkiiqqpndkpAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVlkesrssskdsFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAklmdckmdqMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIqatnkitedgshsqavqgliir
MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNKITEDGSHSQAVQGLIIR
*************LAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLK*********FKFLTKYLATFSGE*********EEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNK*****************
*TTVVPTSEEDPALAVVRFTSELAWA*************************RWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISG***********MRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVIST******************GL***
**********DPALAVVRFTSELAWAD*********VNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNKITE********QGLIIR
*TTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNKITEDG************
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MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNKITEDGSHSQAVQGLIIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query413 2.2.26 [Sep-21-2011]
Q54KZ8401 Eukaryotic translation in yes no 0.799 0.822 0.375 5e-60
Q5ZJ64374 Eukaryotic translation in yes no 0.813 0.898 0.279 2e-34
Q5R8C4374 Eukaryotic translation in yes no 0.813 0.898 0.273 4e-34
Q7L2H7374 Eukaryotic translation in yes no 0.813 0.898 0.273 5e-34
Q0UXJ7441 Eukaryotic translation in N/A no 0.753 0.705 0.285 2e-33
Q99JX4374 Eukaryotic translation in yes no 0.813 0.898 0.270 3e-33
Q3T148373 Eukaryotic translation in yes no 0.811 0.898 0.273 6e-33
Q6DK91374 Eukaryotic translation in yes no 0.813 0.898 0.264 5e-32
A7SPX9379 Eukaryotic translation in N/A no 0.755 0.823 0.276 8e-32
Q7ZYU8374 Eukaryotic translation in N/A no 0.813 0.898 0.262 3e-31
>sp|Q54KZ8|EIF3M_DICDI Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1 Back     alignment and function desciption
 Score =  232 bits (591), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 208/344 (60%), Gaps = 14/344 (4%)

Query: 56  LASLMLTSADLMFS--KVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPND 113
           L+ ++    + +F   K SDKD+E  F VI  ++ K E+ DE++ +++ I   +   P +
Sbjct: 50  LSKIVSNETEFLFKECKDSDKDIEGFFNVILTILHKLENEDEINIVSQKIRDSLSAHPTE 109

Query: 114 KPAMRLKILFNLYNLLENPYS--RFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNI 171
              +++KIL NL+N  + P S  R+ ++   + LA +    E +      IDS+L++WN+
Sbjct: 110 NSQLKIKILTNLFNSFQ-PKSTQRYDIFFALVKLASDSNNLEFVKYQITDIDSWLEDWNV 168

Query: 172 DIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFV 231
            I+ KR L+  I+N+ KE +     S +FL KYL TF+ ED+    EA+E+AVR  IE +
Sbjct: 169 SIQQKRKLYKLISNIFKEKQRML--SHQFLVKYLQTFTKEDSQ---EAQEDAVRVCIESI 223

Query: 232 KSPDMFQCD-LLDMPAIGQLENDAKYAS--VYQLLKIFLTQRLDGYLEFQAGNSALLKSY 288
              +++Q D LLD+PA+  LE     A+   Y+L+KIF T++LD +L+FQ  N   L + 
Sbjct: 224 SLQELYQSDYLLDLPAVQYLEGSTVSANSLTYELMKIFATEQLDSFLQFQQKNPNFLSTI 283

Query: 289 GLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKM 348
           GL ++DC+ K+RL+SL  L S E  ++PY LI   LQI+ +EVE WV+ A    L+D K+
Sbjct: 284 GLSNDDCLQKIRLLSLATLTS-EQSKVPYSLISKMLQIDENEVEMWVINAMEGDLLDAKL 342

Query: 349 DQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQ 392
           DQ+N++V V   T+RVF + QW  L  + S W+++V N++  I+
Sbjct: 343 DQLNRIVNVNSSTQRVFNKSQWSQLGQRFSVWKSSVKNLLQVIE 386
Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.
Dictyostelium discoideum (taxid: 44689)
>sp|Q5ZJ64|EIF3M_CHICK Eukaryotic translation initiation factor 3 subunit M OS=Gallus gallus GN=EIF3M PE=2 SV=1 Back     alignment and function description
>sp|Q5R8C4|EIF3M_PONAB Eukaryotic translation initiation factor 3 subunit M OS=Pongo abelii GN=EIF3M PE=2 SV=1 Back     alignment and function description
>sp|Q7L2H7|EIF3M_HUMAN Eukaryotic translation initiation factor 3 subunit M OS=Homo sapiens GN=EIF3M PE=1 SV=1 Back     alignment and function description
>sp|Q0UXJ7|EIF3M_PHANO Eukaryotic translation initiation factor 3 subunit M OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_03517 PE=3 SV=2 Back     alignment and function description
>sp|Q99JX4|EIF3M_MOUSE Eukaryotic translation initiation factor 3 subunit M OS=Mus musculus GN=Eif3m PE=2 SV=1 Back     alignment and function description
>sp|Q3T148|EIF3M_BOVIN Eukaryotic translation initiation factor 3 subunit M OS=Bos taurus GN=EIF3M PE=2 SV=2 Back     alignment and function description
>sp|Q6DK91|EIF3M_XENTR Eukaryotic translation initiation factor 3 subunit M OS=Xenopus tropicalis GN=eif3m PE=2 SV=1 Back     alignment and function description
>sp|A7SPX9|EIF3M_NEMVE Eukaryotic translation initiation factor 3 subunit M OS=Nematostella vectensis GN=v1g192238 PE=3 SV=1 Back     alignment and function description
>sp|Q7ZYU8|EIF3M_XENLA Eukaryotic translation initiation factor 3 subunit M OS=Xenopus laevis GN=eif3m PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
225451754410 PREDICTED: eukaryotic translation initia 0.992 1.0 0.811 0.0
255585714412 cop9 complex subunit 7a, putative [Ricin 0.992 0.995 0.809 0.0
449481381410 PREDICTED: eukaryotic translation initia 0.992 1.0 0.791 0.0
449447424417 PREDICTED: LOW QUALITY PROTEIN: eukaryot 0.992 0.983 0.778 0.0
224141089439 predicted protein [Populus trichocarpa] 0.992 0.933 0.744 0.0
118488213412 unknown [Populus trichocarpa] 0.992 0.995 0.783 0.0
78191456410 unknown [Solanum tuberosum] 0.992 1.0 0.748 0.0
363808002410 uncharacterized protein LOC100786194 [Gl 0.992 1.0 0.740 0.0
363806844410 uncharacterized protein LOC100788645 [Gl 0.992 1.0 0.726 0.0
356534937410 PREDICTED: eukaryotic translation initia 0.992 1.0 0.726 0.0
>gi|225451754|ref|XP_002280247.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M [Vitis vinifera] gi|296082198|emb|CBI21203.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/413 (81%), Positives = 369/413 (89%), Gaps = 3/413 (0%)

Query: 1   MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
           MTT+VPTSEEDPAL+VVR+T+E++WADAGPE AE QV RLC+EAQE MV GRW+DLASLM
Sbjct: 1   MTTLVPTSEEDPALSVVRYTAEISWADAGPEVAEPQVTRLCMEAQECMVRGRWLDLASLM 60

Query: 61  LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
           LTSADLMFSK SDKDLECIFTVICNLVTK ES DE  EM K IS KI QQPNDK A+RLK
Sbjct: 61  LTSADLMFSKASDKDLECIFTVICNLVTKSESPDEALEMAKFISAKITQQPNDKAALRLK 120

Query: 121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
           ILFNLYNLLENPYSRF+VYMKALNLAVNGKVTEHIIPSFK +DSFLKEWNI I D+RAL+
Sbjct: 121 ILFNLYNLLENPYSRFYVYMKALNLAVNGKVTEHIIPSFKMMDSFLKEWNIGILDQRALY 180

Query: 181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
           L I+N+LKE++S  KD FKFLTKYLATFSGEDA+TM EAKEEAVRTI+EFV++PDMFQCD
Sbjct: 181 LNISNILKENKSLGKDYFKFLTKYLATFSGEDAYTMSEAKEEAVRTIMEFVRAPDMFQCD 240

Query: 241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
           LLDMPA+GQLE DAKYA VYQLLKIFLTQRLD YL+F A NS LLKSYGLVHEDCI KMR
Sbjct: 241 LLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLDFHAANSTLLKSYGLVHEDCITKMR 300

Query: 301 LMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRC 360
           LMSLVDLGS+ES QIPY LIKDTL+I++DEVE WVVKA T KLMDCKMDQMNQVV+V RC
Sbjct: 301 LMSLVDLGSDESCQIPYSLIKDTLRIDDDEVELWVVKAITVKLMDCKMDQMNQVVLVSRC 360

Query: 361 TERVFGQHQWQTLRTKLSTWRANVANVISTIQATNKITEDGSHSQAVQGLIIR 413
           +ERVFGQ QWQ LR+KL TWR N+ANVI+TIQA NKI+EDG  SQA+QGL IR
Sbjct: 361 SERVFGQQQWQNLRSKLLTWRGNIANVINTIQA-NKISEDG--SQAMQGLTIR 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585714|ref|XP_002533539.1| cop9 complex subunit 7a, putative [Ricinus communis] gi|223526589|gb|EEF28842.1| cop9 complex subunit 7a, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449481381|ref|XP_004156166.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449447424|ref|XP_004141468.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit M-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224141089|ref|XP_002323907.1| predicted protein [Populus trichocarpa] gi|222866909|gb|EEF04040.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488213|gb|ABK95926.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|78191456|gb|ABB29949.1| unknown [Solanum tuberosum] Back     alignment and taxonomy information
>gi|363808002|ref|NP_001241950.1| uncharacterized protein LOC100786194 [Glycine max] gi|255644746|gb|ACU22875.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|363806844|ref|NP_001242547.1| uncharacterized protein LOC100788645 [Glycine max] gi|255639778|gb|ACU20182.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356534937|ref|XP_003536007.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
TAIR|locus:2180917442 AT5G15610 "AT5G15610" [Arabido 0.869 0.812 0.699 1.3e-152
TAIR|locus:2076517417 AT3G02200 "AT3G02200" [Arabido 0.997 0.988 0.665 2.6e-150
DICTYBASE|DDB_G0287005401 DDB_G0287005 "proteasome compo 0.799 0.822 0.375 1.2e-58
UNIPROTKB|F1SGR0374 EIF3M "Uncharacterized protein 0.813 0.898 0.273 3.9e-37
UNIPROTKB|F1NZE2375 EIF3M "Eukaryotic translation 0.813 0.896 0.279 4.9e-37
UNIPROTKB|Q5ZJ64374 EIF3M "Eukaryotic translation 0.813 0.898 0.279 4.9e-37
UNIPROTKB|E2QWG8374 EIF3M "Uncharacterized protein 0.813 0.898 0.273 6.3e-37
UNIPROTKB|Q7L2H7374 EIF3M "Eukaryotic translation 0.813 0.898 0.273 6.3e-37
UNIPROTKB|F1N5F7374 EIF3M "Eukaryotic translation 0.813 0.898 0.270 2.1e-36
MGI|MGI:1351744374 Eif3m "eukaryotic translation 0.813 0.898 0.270 2.7e-36
TAIR|locus:2180917 AT5G15610 "AT5G15610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1330 (473.2 bits), Expect = 1.3e-152, Sum P(2) = 1.3e-152
 Identities = 251/359 (69%), Positives = 307/359 (85%)

Query:     1 MTTVVPTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLM 60
             MTT+VPTSEEDP LA+VRFTS+LAWADAGPE AE +V+RLC EA+ES++ G+W+DLA+LM
Sbjct:     1 MTTIVPTSEEDPYLAIVRFTSQLAWADAGPEVAEPEVSRLCKEAEESIINGKWLDLATLM 60

Query:    61 LTSADLMFSKVSDKDLECIFTVICNLVTKPESLDEVHEMTKLISGKIIQQPNDKPAMRLK 120
             +TSADL+ +K+S+KDLEC +T+ICNLV    S +EV EM K I+ K+IQQPNDK ++RLK
Sbjct:    61 VTSADLVSAKISEKDLECTYTIICNLVKNANSPEEVLEMVKAIAAKVIQQPNDKASLRLK 120

Query:   121 ILFNLYNLLENPYSRFFVYMKALNLAVNGKVTEHIIPSFKKIDSFLKEWNIDIKDKRALF 180
             ILFNLYNL+++P +RF VYMKAL LAVNGKVTE+I+PSFKKIDSFLKEWNIDIKD+R LF
Sbjct:   121 ILFNLYNLVDHPNARFQVYMKALELAVNGKVTEYIVPSFKKIDSFLKEWNIDIKDQRELF 180

Query:   181 LGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD 240
             L IA VL+E++S +K+S +F+T YLATFS ED   + EAKEEAVR +IEFVK+P +FQCD
Sbjct:   181 LAIAKVLRENKSFAKESLQFVTNYLATFSNEDTQVLSEAKEEAVRAVIEFVKAPSIFQCD 240

Query:   241 LLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMR 300
             LLD PA+ QLE D   A VYQLLKIFLTQRLD Y+EFQ  NS  L++YGLV EDC+AKMR
Sbjct:   241 LLDHPAVAQLEKDPNNAPVYQLLKIFLTQRLDAYMEFQNANSGFLQTYGLVEEDCVAKMR 300

Query:   301 LMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRR 359
             L+SLVDL S++SG+IPY  IK+TLQ+N++EVE WVVKA TAKL+ CKMDQMNQVVIVR+
Sbjct:   301 LLSLVDLASDDSGKIPYASIKNTLQVNDEEVELWVVKAITAKLVACKMDQMNQVVIVRQ 359
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006302 "double-strand break repair" evidence=RCA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007129 "synapsis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
TAIR|locus:2076517 AT3G02200 "AT3G02200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0287005 DDB_G0287005 "proteasome component region PCI (PINT) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGR0 EIF3M "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZE2 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ64 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWG8 EIF3M "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q7L2H7 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5F7 EIF3M "Eukaryotic translation initiation factor 3 subunit M" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1351744 Eif3m "eukaryotic translation initiation factor 3, subunit M" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
pfam01399100 pfam01399, PCI, PCI domain 1e-13
smart0075388 smart00753, PAM, PCI/PINT associated module 5e-09
smart0008888 smart00088, PINT, motif in proteasome subunits, In 5e-09
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information 
 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 259 VYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVH--EDCIAKMRLMSLVDLGSNESGQIP 316
              LL+ F +  L  + E  A N   L   GL    ED   K+R ++L  L +     I 
Sbjct: 1   YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRL-AKPYSSIS 59

Query: 317 YGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIV 357
              +   L ++ DEVEK + K      +  K+DQ+N +V+ 
Sbjct: 60  LSDLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVVF 100

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module Back     alignment and domain information
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 413
KOG2753378 consensus Uncharacterized conserved protein, conta 100.0
KOG2908380 consensus 26S proteasome regulatory complex, subun 100.0
KOG3250258 consensus COP9 signalosome, subunit CSN7 [Posttran 99.85
KOG0687393 consensus 26S proteasome regulatory complex, subun 99.64
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.58
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 99.52
smart0075388 PAM PCI/PINT associated module. 99.52
COG5187412 RPN7 26S proteasome regulatory complex component, 99.45
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 99.03
KOG2581493 consensus 26S proteasome regulatory complex, subun 98.69
KOG0686466 consensus COP9 signalosome, subunit CSN1 [Posttran 97.93
KOG1498439 consensus 26S proteasome regulatory complex, subun 97.73
KOG2688394 consensus Transcription-associated recombination p 97.63
KOG1463411 consensus 26S proteasome regulatory complex, subun 97.34
KOG1497399 consensus COP9 signalosome, subunit CSN4 [Posttran 97.25
COG5600413 Transcription-associated recombination protein [DN 97.07
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 96.23
COG5159421 RPN6 26S proteasome regulatory complex component [ 95.78
KOG2582422 consensus COP9 signalosome, subunit CSN3 [Posttran 95.21
COG5071439 RPN5 26S proteasome regulatory complex component [ 94.7
KOG2758432 consensus Translation initiation factor 3, subunit 93.61
KOG1076843 consensus Translation initiation factor 3, subunit 90.46
PF10075143 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro 88.05
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 86.56
KOG2072 988 consensus Translation initiation factor 3, subunit 84.32
PF03399204 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I 82.45
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 81.35
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-70  Score=526.28  Aligned_cols=368  Identities=42%  Similarity=0.720  Sum_probs=337.3

Q ss_pred             CCCCCCcceeeeeecccccccccCCcchhHHHHHHHHHHHhhhhhhhhhhHHHH-HhhhhhhhhccCCCCcchhheeeeh
Q 015104            6 PTSEEDPALAVVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASL-MLTSADLMFSKVSDKDLECIFTVIC   84 (413)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~e~~~~~~~~e~l~~~klw~qLt~~-l~~~~~~~~~~~~dke~e~~~n~i~   84 (413)
                      +||+|+|+++..+|..+++|.++|+..+++|..   .+..+     .|.+++.. +++.|+.+++. |+|++||++|+|+
T Consensus         1 ~~~~e~P~f~dis~~~Ql~elr~yl~~~eaeis---~e~~~-----kgl~~~l~~ii~~c~v~~k~-~ekdle~vlnsi~   71 (378)
T KOG2753|consen    1 PTSEEVPVFADISFEEQLAELRAYLKKLEAEIS---EEASE-----KGLEEDLLMIIEACDVLAKI-PEKDLECVLNSIV   71 (378)
T ss_pred             CCCccCceEEEecHHHHHHHHHHHHhhcCcccc---hhhhc-----cCHHHHHHHHHHHhHHhhcC-CcchHHHHHHHHH
Confidence            689999999999999999999999999999888   22222     46555555 44547776655 9999999999999


Q ss_pred             hcccCCCChhHHHHHHHHHHhhhhcCCCCC-cchhHHHHHHHhhhhcCc-chhhHHHHHHHhHhhcCccccccccchhch
Q 015104           85 NLVTKPESLDEVHEMTKLISGKIIQQPNDK-PAMRLKILFNLYNLLENP-YSRFFVYMKALNLAVNGKVTEHIIPSFKKI  162 (413)
Q Consensus        85 ~lv~~~~~~~~~l~~v~~l~~~~~~~~~~~-~~~~l~~L~~Lfn~l~~~-~~r~~v~~~il~~a~~~~~~~~~~~~l~~~  162 (413)
                      +++...+ +++..++++.+|+++.+++++. +.+||++|++|||.++.+ +.|+.||++++++|..++.+..+.+.++.+
T Consensus        72 sLi~~~~-~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~  150 (378)
T KOG2753|consen   72 SLIKNAP-PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQL  150 (378)
T ss_pred             HHHHhCC-HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHH
Confidence            9998875 9999999999999999988765 779999999999999875 589999999999999999999999999999


Q ss_pred             HHHHhhhccCchhhhHHHHHHHHhhhhcccCchhhHHHHHHHhhhccCCccchhhHHHHHHHHHHHhhhcCCCccccc-c
Q 015104          163 DSFLKEWNIDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-L  241 (413)
Q Consensus       163 ~~~L~~w~~~~~~~~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~~~~~~~~~~e~~~~a~~lii~aL~~~~i~~fe-L  241 (413)
                      ++|+++|+++.+.+|.+|++++++++.++. .+++.+++..||+||+.+++   ++|++.|.+|++.|+.+|++|.|| |
T Consensus       151 ~~~lkew~~~vedqrel~r~v~~al~~~k~-~~~s~kvmt~lLgtyt~dna---s~AredA~rcV~~av~dP~~F~fD~L  226 (378)
T KOG2753|consen  151 DDWLKEWNISVEDQRELLRAVHKALKDNKS-VDESSKVMTELLGTYTEDNA---SEAREDAMRCVVEAVKDPKIFLFDHL  226 (378)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHhcch-hhhHHHHHHHHHHHhcccch---hHHHHHHHHHHHHHHcCCceeccchh
Confidence            999999999999999999999999998754 78999999999999999875   578999999999999999999996 9


Q ss_pred             CCCccccccccchhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhhhhhhhhccCCCCCCCcchhhhh
Q 015104          242 LDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIK  321 (413)
Q Consensus       242 L~~p~v~~L~~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~KirLLaL~~L~~~~~r~isy~~Ia  321 (413)
                      +.+|+|++|+++    .+|+||.||.+|.+++|.+|.+.|++|+.++|++|+.+.+||||||||+||.. +++|||++|+
T Consensus       227 l~L~pV~qLE~d----~i~qLL~IF~s~~L~aYveF~~~N~~Fvqs~gl~~E~~~~KMRLLTlm~LA~e-s~eisy~~l~  301 (378)
T KOG2753|consen  227 LTLPPVKQLEGD----LIHQLLKIFVSGKLDAYVEFVAANSGFVQSQGLVHEQNMAKMRLLTLMSLAEE-SNEISYDTLA  301 (378)
T ss_pred             ccCchHHHhccc----hHHHHHHHHHhcchHHHHHHHHhChHHHHHhcccHHHHHHHHHHHHHHHHhcc-CCCCCHHHHH
Confidence            999999999986    49999999999999999999999999999999999999999999999999996 8999999999


Q ss_pred             hccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhh-hhhHHHHHHHhh
Q 015104          322 DTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTW-RANVANVISTIQ  392 (413)
Q Consensus       322 ~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W-~~~v~~~~~~v~  392 (413)
                      ++|+|.+||||.|||+||++|+|+|||||++++|+|+++++|+||++||+.|+++|..| ++++.++.+...
T Consensus       302 k~LqI~edeVE~fVIdaI~aklV~~kidq~~~~viVs~~~hR~FG~~qW~~L~~kL~aw~k~~~stv~~~l~  373 (378)
T KOG2753|consen  302 KELQINEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSSSTHRTFGKQQWQQLRDKLAAWGKQNLSTVRENLQ  373 (378)
T ss_pred             HHhccCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeehhhhhhcccHHHHHHHHHHHHHHhhhhHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999 666666655544

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8 Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 3e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 6e-04
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Length = 169 Back     alignment and structure
 Score =  113 bits (284), Expect = 3e-30
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 15/170 (8%)

Query: 205 LATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQCD-LLDMPAIGQLENDAKYASVYQLL 263
           +       +       E     IIE    P +F    +L +P + QLE     +    LL
Sbjct: 11  IDQLVKRAS---TCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGT-TDSVYLDLL 66

Query: 264 KIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDT 323
           ++F       Y         L         D I K++ ++++ L  + +  +PY  +   
Sbjct: 67  RLFAHGTWGDYKCNATRLPHL-------SPDQILKLKQLTVLTLAES-NKVLPYDTLMVE 118

Query: 324 LQINN-DEVEKWVV-KARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQ 371
           L ++N  E+E +++ +   A ++  K+DQ+ +   V     R     Q  
Sbjct: 119 LDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLG 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 100.0
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 99.85
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 99.68
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 99.54
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.45
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 99.2
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 98.89
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 98.79
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 98.27
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 96.49
4b4t_T274 26S proteasome regulatory subunit RPN12; hydrolase 91.0
3f6o_A118 Probable transcriptional regulator, ARSR family pr 82.27
1wi9_A72 Protein C20ORF116 homolog; helix-turn-helix motif, 81.85
2hzt_A107 Putative HTH-type transcriptional regulator YTCD; 80.06
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=4.2e-57  Score=459.64  Aligned_cols=364  Identities=15%  Similarity=0.197  Sum_probs=267.2

Q ss_pred             eeeecccccccccCCcchhHHHHHHHHHHHhhhhhhhhhhHHHHHhhhhhhhhccCC-CCcchhheeeehhcccCCCChh
Q 015104           16 VVRFTSELAWADAGPEAAEEQVNRLCLEAQESMVMGRWMDLASLMLTSADLMFSKVS-DKDLECIFTVICNLVTKPESLD   94 (413)
Q Consensus        16 ~~~~~~~~~~~~~~~~~a~~e~~~~~~~~e~l~~~klw~qLt~~l~~~~~~~~~~~~-dke~e~~~n~i~~lv~~~~~~~   94 (413)
                      |.+||++++.+      ++||+++.|+++|++|++|||||||.+|..    +|.+.. ....-.+|+.|+   ..|.+..
T Consensus         7 i~~~l~~~~~~------~~~~l~~~~~~le~~~~~kLWhqlt~~L~~----~~~~~~~~~~~~~ly~~fi---~~f~~ki   73 (393)
T 4b4t_O            7 IDTILSTLRME------ADPSLHPLFEQFEKFYEEKLWFQLSESLTK----FFDDAKSTPLRLRLYDNFV---SKFYDKI   73 (393)
T ss_dssp             HHHHHHHHHCS------SCSSCCSSHHHHHHHHCCSSCCSCCCTTHH----HHCCCSSCCCCHHHHHHHH---HHHHHHS
T ss_pred             HHHHHHHHHhc------CCHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhChhcchHHHHHHHHHH---HHHHHhc
Confidence            67899999998      888999999999999999999999998866    555421 123445777664   3454555


Q ss_pred             HHHHHHHHHHhhhhcCCCCCcchhHHHHHHHhhhhcC---c---------chhhHHH--HHHHhHhhcCccccccccchh
Q 015104           95 EVHEMTKLISGKIIQQPNDKPAMRLKILFNLYNLLEN---P---------YSRFFVY--MKALNLAVNGKVTEHIIPSFK  160 (413)
Q Consensus        95 ~~l~~v~~l~~~~~~~~~~~~~~~l~~L~~Lfn~l~~---~---------~~r~~v~--~~il~~a~~~~~~~~~~~~l~  160 (413)
                      |.+++++.++.... + ..++..++.+|..++..+..   .         ..++.+|  +.+..+--..|+++.+++.++
T Consensus        74 n~L~lv~~~~~~~~-~-~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~  151 (393)
T 4b4t_O           74 NQLSVVKYLLASLK-D-SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLD  151 (393)
T ss_dssp             CSHHHHHTTHHHHH-H-TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh-h-cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            77888886655443 3 35678899999998776531   0         1234444  233333334589999999999


Q ss_pred             chHHHHhhhc-cCchhhhHHHHHHHHhhhhcccCchhhHHHHHHHhhhccCCccchhhHHHHHHHHHHHhhhcCCCcccc
Q 015104          161 KIDSFLKEWN-IDIKDKRALFLGIANVLKESRSSSKDSFKFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMFQC  239 (413)
Q Consensus       161 ~~~~~L~~w~-~~~~~~~~~y~~~~~~l~~~~~~~~~~y~~~l~yL~t~~~~~~~~~~e~~~~a~~lii~aL~~~~i~~f  239 (413)
                      +++..+++.+ +++.++.+||.+.+.+++. +++++.+|++++.|++|++..+..+..++...|+.++++||.+|++|+|
T Consensus       152 ~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~-~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f  230 (393)
T 4b4t_O          152 DLEKTLDKKDSIPLRITNSFYSTNSQYFKF-KNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNF  230 (393)
T ss_dssp             HHHHHHHHSCCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCST
T ss_pred             HHHHhhhccCCccHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCCh
Confidence            9999999876 6678999999999999998 5889999999999999998654334567788999999999999999999


Q ss_pred             -ccCCCccccccccchhhhHHHHHHHHHHHhhcccchhccccchhhhhhcCCcchhHHhhhhhhhhhccCCC-CCCCcch
Q 015104          240 -DLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSN-ESGQIPY  317 (413)
Q Consensus       240 -eLL~~p~v~~L~~~~~~~~l~~LL~~f~~G~l~~f~~~~~~~~~~l~~~~l~~~~~~~KirLLaL~~L~~~-~~r~isy  317 (413)
                       +||.+|.+++|.+++++.|+++||.+|+.||+.+|+++.+.+.+.+...+.....+.+|||+++|++|++. ++|.|||
T Consensus       231 ~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f  310 (393)
T 4b4t_O          231 GELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSF  310 (393)
T ss_dssp             HHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEH
T ss_pred             HHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcH
Confidence             89999999999877899999999999999999999998776654443333345677999999999999976 5789999


Q ss_pred             hhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecccccccchhhHHHHHhhhhhhhhhHHHHHHHhhhcc
Q 015104          318 GLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATN  395 (413)
Q Consensus       318 ~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v~~R~~~~~q~~~L~~rL~~W~~~v~~~~~~v~~~~  395 (413)
                      ++|+++|+||++|||.|||+||+.|+|+|+|||++|+|+|+|++||+|+++||+.|+++|..|+++|+++.+.|++.+
T Consensus       311 ~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~  388 (393)
T 4b4t_O          311 EDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEARG  388 (393)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC--------------------------------------
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999843
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} Back     alignment and structure
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 98.36
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 81.66
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 81.41
d2cyya160 Putative transcriptional regulator PH1519 {Archaeo 81.16
d2cg4a163 Regulatory protein AsnC {Escherichia coli [TaxId: 80.88
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=1.1e-07  Score=73.41  Aligned_cols=59  Identities=19%  Similarity=0.173  Sum_probs=51.5

Q ss_pred             HhhhhhhhhhccCCCCCCCcchhhhhhccccCcchhhhHHhhhhhhccccccccccccEEEEecc
Q 015104          296 IAKMRLMSLVDLGSNESGQIPYGLIKDTLQINNDEVEKWVVKARTAKLMDCKMDQMNQVVIVRRC  360 (413)
Q Consensus       296 ~~KirLLaL~~L~~~~~r~isy~~Ia~~l~i~~~eVE~lvi~aI~~gLI~gkIDQv~~~v~vt~v  360 (413)
                      .+.|+.++-.      +..|+++.||+.|+++.++||.+|.+.|..|.|.|+|||++++|+++..
T Consensus        18 Ehni~~is~~------Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~   76 (84)
T d1ufma_          18 EHNLLSASKL------YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR   76 (84)
T ss_dssp             HHHHHHHHHS------CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred             HHHHHHHHHh------hceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCC
Confidence            4555544332      7899999999999999999999999999999999999999999998764
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure