Citrus Sinensis ID: 015112

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---

MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPSSNHTAPNYAEMKVKQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQCT

cccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHHHccccccccccccccccccccEEEEcEEEccccEEEEEEccEEcccccccccccEEEEcccEEEEcHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHccccccccccccEEEEEcccccccccEEEcHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccc

cccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccHHHHHcccEEEEcccccEEcccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHccccccccccccccccccccccEEEEEEccccEEEccccEEEEcccccccccEEEEccccEEEEccHHHHEEEEcccccHHHHHHHHHHccccccccEEEEEEccccccccccccccEEEEccccccccccEccHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccHcccccccHHHHHHHHHHHHHcHccccccccc

MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFsifpssnhtapnyaemkvkqsepapsgpkiprfaylvsgskgDLEKLWRTLQAlyhprnryvlhldleaptEERLELASRvekdpmfskvGNVYMSTKanmvtyrgptmVANTLHACAILLKnskdwdwfinlsasdyplvtqddLLYTFSGLSRKLNFIEHTshlgwkeekramplmvdpglymltksdifwvtprrtlptafkLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNfvsspesyFQTVIcnvpefvptvvnhdlhyiswdnppgqhphilslndtsemiSSSAAFARKFRQNALVLDKIdkellgrkngsftpgawcsgdphcskvgdpnkikpgpgaERLRRLVARLTMEAKRGLNQCT

MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPSSNHTAPNYAEMKVKQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELasrvekdpmfskvGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTshlgwkeekraMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSftpgawcsgdphcskvgdpnkikpgpgaERLRRLVARLTMEAKRGLNQCT

***KWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFP***************************RFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAP**************PMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPP****HILS***********AAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSG*****************************************

*EKKWVFPLVISSLICVFLLATSFNMGLIS**************************************IPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQC*

MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPSSNHTAPNYAE************PKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQCT

*EKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPSSNHTAPNYAEMKVKQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKR****C*

iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		413	2.2.26 [Sep-21-2011]
Q9EPI0		864	Xylosyltransferase 2 OS=R	yes	no	0.728	0.348	0.291	2e-21
Q9EPL0		865	Xylosyltransferase 2 OS=M	yes	no	0.716	0.342	0.287	9e-21
Q5QQ50		865	Xylosyltransferase 2 OS=C	yes	no	0.702	0.335	0.295	1e-20
Q5QQ54		843	Xylosyltransferase OS=Cio	N/A	no	0.745	0.365	0.286	1e-20
Q9H1B5		865	Xylosyltransferase 2 OS=H	yes	no	0.697	0.332	0.294	2e-19
Q5QQ51		865	Xylosyltransferase 2 OS=P	yes	no	0.697	0.332	0.294	2e-19
Q5QQ53		880	Xylosyltransferase oxt OS	yes	no	0.677	0.318	0.287	5e-19
Q9EPI1		821	Xylosyltransferase 1 (Fra	no	no	0.702	0.353	0.276	6e-19
Q5QQ56		950	Xylosyltransferase 1 OS=C	no	no	0.682	0.296	0.273	1e-18
Q5QQ49		867	Xylosyltransferase 2 OS=B	yes	no	0.709	0.337	0.283	1e-18

>sp\|Q9EPI0\|XYLT2_RAT Xylosyltransferase 2 OS=Rattus norvegicus GN=Xylt2 PE=2 SV=1	Back alignment and function desciption

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 42/343 (12%)

Query: 45  SNHTAPNYAEMKVKQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHL 104
           +   +P     +V+  +P  SGP + R AY++      + +L R L+A+YH  + + +H+
Sbjct: 209 AGKVSPGIQWEEVRAQQPV-SGPLV-RIAYMLVVHGRAVRQLKRLLKAVYHEEHFFYIHV 266

Query: 105 DLEAPT--EERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKN 162
           D  +     E +ELA   +         NV ++    +  + G +++   L +   LL+ 
Sbjct: 267 DKRSNYLYREVVELAQHYD---------NVRVTPWRMVTIWGGASLLRMYLRSMKDLLET 317

Query: 163 SK-DWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPG 221
               WD+FINLSA+DYP  T ++L+  F   +R  NF++  SH   ++  R +       
Sbjct: 318 PGWTWDFFINLSATDYPTRTNEELV-AFLSKNRDKNFLK--SH--GRDNSRFIKKQGLDR 372

Query: 222 LYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFV 281
           L+    S + W    R +P    +  GS W VL+RSFVEY ++  D L   L  +YT  +
Sbjct: 373 LFHECDSHM-WRLGERQIPAGIVVDGGSDWFVLTRSFVEYVVYTEDPLVAQLRQFYTYTL 431

Query: 282 SSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPG---QHPHIL-----SLNDTS---- 329
              ES+F TV+ N P    ++V+++L   +W+   G   Q+ HI+     S ND      
Sbjct: 432 LPAESFFHTVLENSPA-CESLVDNNLRVTNWNRKLGCKCQYKHIVDWCGCSPNDFKPQDF 490

Query: 330 ---EMISSSAAFARKFRQ--NALVLDKIDKELLGRKNGSFTPG 367
              + +S    FARKF    N  VL+ +D  L     GS+ PG
Sbjct: 491 LRLQQVSRPTFFARKFESTVNQEVLEILDFHLY----GSYPPG 529

Probably catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6

>sp\|Q9EPL0\|XYLT2_MOUSE Xylosyltransferase 2 OS=Mus musculus GN=Xylt2 PE=2 SV=3	Back alignment and function description

>sp\|Q5QQ50\|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ54\|XYLT_CIOSA Xylosyltransferase OS=Ciona savignyi GN=xt PE=2 SV=1	Back alignment and function description

>sp\|Q9H1B5\|XYLT2_HUMAN Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2	Back alignment and function description

>sp\|Q5QQ51\|XYLT2_PANTR Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ53\|XYLT_DROPS Xylosyltransferase oxt OS=Drosophila pseudoobscura pseudoobscura GN=oxt PE=2 SV=1	Back alignment and function description

>sp\|Q9EPI1\|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ56\|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ49\|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		413
255585738		417	acetylglucosaminyltransferase, putative	0.992	0.983	0.782	0.0
312281941		424	unnamed protein product [Thellungiella h	0.997	0.971	0.770	0.0
359493840		422	PREDICTED: xylosyltransferase oxt [Vitis	0.997	0.976	0.795	0.0
302143000		416	unnamed protein product [Vitis vinifera]	0.997	0.990	0.795	0.0
297830096		424	glycosyltransferase family 14 protein [A	0.997	0.971	0.763	0.0
18400725		424	Core-2/I-branching beta-1,6-N-acetylgluc	0.997	0.971	0.755	0.0
224117188		419	predicted protein [Populus trichocarpa]	0.997	0.983	0.760	0.0
15146308		424	AT3g15350/K7L4_15 [Arabidopsis thaliana]	0.997	0.971	0.753	0.0
224128111		419	predicted protein [Populus trichocarpa]	0.997	0.983	0.765	0.0
449457025		420	PREDICTED: xylosyltransferase 2-like [Cu	0.995	0.978	0.746	0.0

>gi\|255585738\|ref\|XP_002533550.1\| acetylglucosaminyltransferase, putative [Ricinus communis] gi\|223526575\|gb\|EEF28830.1\| acetylglucosaminyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/413 (78%), Positives = 357/413 (86%), Gaps = 3/413 (0%)

Query: 1   MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPSS-NHTAPNYAEMKVKQ 59
           MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTIN IF+IFPS  N +   YAEM+V Q
Sbjct: 6   MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINQIFNIFPSRINQSVDGYAEMRVSQ 65

Query: 60  SEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASR 119
           S P  SG  +PRFAYL+SGSKGDL+KLWRTL ALYHPRN+YV+HLDLE+  EERLELASR
Sbjct: 66  SPPQTSG--LPRFAYLISGSKGDLDKLWRTLHALYHPRNQYVVHLDLESSAEERLELASR 123

Query: 120 VEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPL 179
           VEK P+F+KVGNV+M +KANMVTYRGPTMVANTLHACAILL+ SKDWDWFINLSASDYPL
Sbjct: 124 VEKHPVFAKVGNVHMISKANMVTYRGPTMVANTLHACAILLRRSKDWDWFINLSASDYPL 183

Query: 180 VTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTL 239
           +TQDDLL TFS ++R LNFIEHTS LGWKE+KRAMPL+VDPGLY  TK+DI+W TPRR L
Sbjct: 184 ITQDDLLETFSTINRNLNFIEHTSQLGWKEDKRAMPLIVDPGLYSTTKTDIYWATPRRAL 243

Query: 240 PTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFV 299
           PTAF+LFTGSAWMVL+RSFVEY IWGWDNLPR LLMYYTNFVSSPE YF TVICNVPEF 
Sbjct: 244 PTAFRLFTGSAWMVLTRSFVEYLIWGWDNLPRILLMYYTNFVSSPEGYFHTVICNVPEFA 303

Query: 300 PTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGR 359
            T VNHDLHYISWD PP QHPH LSLNDT +M+ S AAFARKFRQ+  VLD IDK+LLGR
Sbjct: 304 QTAVNHDLHYISWDIPPRQHPHTLSLNDTQKMVDSGAAFARKFRQDDPVLDTIDKDLLGR 363

Query: 360 KNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQC 412
           K+G FTPG WCS  P CS VGDPN IKPGPGA+R +RL+AR+ + +K   NQC
Sbjct: 364 KSGGFTPGGWCSDSPKCSNVGDPNNIKPGPGADRFKRLIARVALSSKLNQNQC 416

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|312281941\|dbj\|BAJ33836.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|359493840\|ref\|XP_002285024.2\| PREDICTED: xylosyltransferase oxt [Vitis vinifera]	Back alignment and taxonomy information

>gi\|302143000\|emb\|CBI20295.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297830096\|ref\|XP_002882930.1\| glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata] gi\|297328770\|gb\|EFH59189.1\| glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18400725|ref|NP_566506.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi|42572447|ref|NP_974319.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi|9294262|dbj|BAB02164.1| glycosylation enzyme-like protein [Arabidopsis thaliana] gi|19715568|gb|AAL91610.1| AT3g15350/K7L4_15 [Arabidopsis thaliana] gi|20856992|gb|AAM26694.1| AT3g15350/K7L4_15 [Arabidopsis thaliana] gi|332642124|gb|AEE75645.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gi|332642125|gb|AEE75646.1| Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|224117188\|ref\|XP_002317501.1\| predicted protein [Populus trichocarpa] gi\|222860566\|gb\|EEE98113.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|15146308\|gb\|AAK83637.1\| AT3g15350/K7L4_15 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224128111\|ref\|XP_002329084.1\| predicted protein [Populus trichocarpa] gi\|222869753\|gb\|EEF06884.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449457025\|ref\|XP_004146249.1\| PREDICTED: xylosyltransferase 2-like [Cucumis sativus] gi\|449526205\|ref\|XP_004170104.1\| PREDICTED: xylosyltransferase 2-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		413
TAIR\|locus:2087125		424	AT3G15350 [Arabidopsis thalian	0.997	0.971	0.755	2.3e-174
TAIR\|locus:2124009		421	AT4G27480 [Arabidopsis thalian	0.995	0.976	0.717	7.4e-169
TAIR\|locus:2037065		423	AT1G53100 [Arabidopsis thalian	0.970	0.947	0.683	2e-150
TAIR\|locus:2178047		447	AT5G39990 [Arabidopsis thalian	0.980	0.906	0.575	1.1e-126
TAIR\|locus:2147880		434	AT5G15050 [Arabidopsis thalian	0.987	0.940	0.573	2.4e-124
TAIR\|locus:2020748		447	AT1G03520 [Arabidopsis thalian	0.985	0.910	0.547	3.6e-121
TAIR\|locus:2125502		448	AT4G03340 [Arabidopsis thalian	0.985	0.908	0.546	2.3e-119
TAIR\|locus:2096399		378	UNE7 "unfertilized embryo sac	0.895	0.978	0.550	3.5e-107
TAIR\|locus:2026356		395	AT1G71070 [Arabidopsis thalian	0.828	0.865	0.489	6.1e-95
TAIR\|locus:505006303		384	AT2G37585 [Arabidopsis thalian	0.794	0.854	0.534	4.8e-94

TAIR\|locus:2087125 AT3G15350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1694 (601.4 bits), Expect = 2.3e-174, P = 2.3e-174
 Identities = 316/418 (75%), Positives = 355/418 (84%)

Query:     1 MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPS---SNHTAPNYAEMKV 57
             +EK+WVFPLVI+SL+CVFLLATSFNMGL+SSL TIN IFSI PS    N T  ++AE KV
Sbjct:     6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINGIFSIIPSRLVKNQTRLDFAESKV 65

Query:    58 -KQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLEL 116
              +Q+   P   K+PRFAYLVSGSKGD+EKLWRTL+A+YHPRN+YV+HLDLE+P  ERLEL
Sbjct:    66 ARQTRVLPHEDKLPRFAYLVSGSKGDVEKLWRTLRAVYHPRNQYVVHLDLESPVNERLEL 125

Query:   117 ASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASD 176
             ASR+  DPM+SK GNVYM TKAN+VTY+GPTMVANTLHACA+LLK + +WDWFINLSASD
Sbjct:   126 ASRINNDPMYSKTGNVYMITKANLVTYKGPTMVANTLHACAVLLKRNANWDWFINLSASD 185

Query:   177 YPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPR 236
             YPLVTQDDLL+TFS L R LNFIEHTS LGWKEEKRA PLM+DPGLY+L KSDI+WVTPR
Sbjct:   186 YPLVTQDDLLHTFSTLDRNLNFIEHTSQLGWKEEKRAQPLMIDPGLYLLNKSDIYWVTPR 245

Query:   237 RTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVP 296
             R+LPTAFKLFTGSAWM LSR FVEYCIWGWDNLPRTLLMYYTNFVSSPE YFQTVICNVP
Sbjct:   246 RSLPTAFKLFTGSAWMALSRPFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFQTVICNVP 305

Query:   297 EFVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKEL 356
             EF  T VNHDLHYISWDNPP QHPH+LSLNDT  MI S AAFARKFR++  VL+KIDKEL
Sbjct:   306 EFAKTAVNHDLHYISWDNPPQQHPHVLSLNDTMPMIWSGAAFARKFRRDDEVLNKIDKEL 365

Query:   357 LGRKNG--SFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQC 412
             L R+N   SFTPG WCSG P CS+VG+  KI P  GA+RL+ LV RL  EA  G++QC
Sbjct:   366 LKRRNDKDSFTPGGWCSGKPKCSRVGNVAKIVPSFGAQRLQGLVTRLVNEANTGVSQC 423

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISS

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR\|locus:2124009 AT4G27480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037065 AT1G53100 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178047 AT5G39990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147880 AT5G15050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020748 AT1G03520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125502 AT4G03340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2096399 UNE7 "unfertilized embryo sac 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026356 AT1G71070 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006303 AT2G37585 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		413
PLN03183		421	PLN03183, PLN03183, acetylglucosaminyltransferase	0.0
pfam02485		242	pfam02485, Branch, Core-2/I-Branching enzyme	3e-89

>gnl\|CDD\|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

 Score =  813 bits (2101), Expect = 0.0
 Identities = 341/415 (82%), Positives = 369/415 (88%), Gaps = 3/415 (0%)

Query: 1   MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPSS--NHTAPNYAEMKVK 58
           +EK+WVFPLVI+SL+CVFLLATSFNMGL+SSL TIN+IFSIFP S  N T   +AE KV 
Sbjct: 6   VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVN 65

Query: 59  QS-EPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELA 117
           QS  P P   K+PRFAYLVSGSKGDLEKLWRTL+ALYHPRN+YV+HLDLE+P EERLELA
Sbjct: 66  QSPHPPPVQDKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELA 125

Query: 118 SRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWFINLSASDY 177
           SRVE DPMFSKVGNVYM TKAN+VTYRGPTMVANTLHACAILLK SKDWDWFINLSASDY
Sbjct: 126 SRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDY 185

Query: 178 PLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRR 237
           PLVTQDDL++TFS L R LNFIEHTS LGWKEEKRAMPL++DPGLY   KSDI+WVTPRR
Sbjct: 186 PLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR 245

Query: 238 TLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPE 297
           +LPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPE YF TVICNVPE
Sbjct: 246 SLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPE 305

Query: 298 FVPTVVNHDLHYISWDNPPGQHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELL 357
           F  T VNHDLHYISWDNPP QHPH LSLNDT +MI+S AAFARKFR++  VLDKIDKELL
Sbjct: 306 FAKTAVNHDLHYISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELL 365

Query: 358 GRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRLVARLTMEAKRGLNQC 412
           GRKNGSFTPG WCSG P CS+VGDP KIKPGPGA+RL+ LV+RL +EAK G NQC
Sbjct: 366 GRKNGSFTPGGWCSGKPKCSRVGDPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQC 420

Length = 421

>gnl\|CDD\|217062 pfam02485, Branch, Core-2/I-Branching enzyme	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		413
PLN03183		421	acetylglucosaminyltransferase family protein; Prov	100.0
KOG0799		439	consensus Branching enzyme [Carbohydrate transport	100.0
PF02485		244	Branch: Core-2/I-Branching enzyme; InterPro: IPR00	100.0
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	93.97
PRK11204		420	N-glycosyltransferase; Provisional	90.66
TIGR03111		439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	89.43
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	87.53
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	86.76
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	86.17
PRK14716		504	bacteriophage N4 adsorption protein B; Provisional	83.97

>PLN03183 acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.1e-119  Score=920.04  Aligned_cols=413  Identities=82%  Similarity=1.370  Sum_probs=387.2

Q ss_pred             CCccchhHHHHHHHHHHHHHHHHhhcccccccccccccccccCC--CCCCCCccccccccCCC-CCCCCCCCCcEEEEEE
Q 015112            1 MEKKWVFPLVISSLICVFLLATSFNMGLISSLHTINAIFSIFPS--SNHTAPNYAEMKVKQSE-PAPSGPKIPRFAYLVS   77 (413)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~kiAYLI~   77 (413)
                      |||||++|++++++++++|++++++||++++++++++.|.+++.  .+++.+.|+|+++.+.| .++..++||||||||+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~   85 (421)
T PLN03183          6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS   85 (421)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence            68999999999999999998888777887666655555655542  46667779999987654 2234566999999999


Q ss_pred             eeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecCccHHHHHHHHHH
Q 015112           78 GSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACA  157 (413)
Q Consensus        78 ~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~  157 (413)
                      ||+||.+|++|||++||||+|+||||+|+||+..++.+++..++.++++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus        86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~  165 (421)
T PLN03183         86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA  165 (421)
T ss_pred             ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence            99889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCceEEeccCCcccccchhHHHHHHhccCCCcceEEeecCCCCcceecccccccCCCccccccccceeeccCC
Q 015112          158 ILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRR  237 (413)
Q Consensus       158 ~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~~~~~nFIe~~~~~~wk~~~R~~~~i~dpgl~~~~k~~~~~~~~kR  237 (413)
                      .|++.+.+|||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|+++++++||+|..++++++|.+++|
T Consensus       166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R  245 (421)
T PLN03183        166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR  245 (421)
T ss_pred             HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence            99998899999999999999999999988888889999999999988899999999999999999988888899999999


Q ss_pred             CCCCCeeeeccceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhHHHHHhcCCCCCCccccCceeEEecCCCCC
Q 015112          238 TLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEFVPTVVNHDLHYISWDNPPG  317 (413)
Q Consensus       238 ~~p~~~~l~~GS~W~~LsR~fvey~l~~~d~lpr~ll~yf~~~~~pDE~yFqTvl~Ns~~f~~t~vn~~LRyi~W~~~~~  317 (413)
                      .+|.++++|+||+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|+|||+|+++++
T Consensus       246 ~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~~  325 (421)
T PLN03183        246 SLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPPK  325 (421)
T ss_pred             cCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCccChhhHHHHhcCCceEEeccCCCHHHHHHHHHHHhCCCCCCCCCCccccCCCCCCCCCCCCcccCCchhHHHHHH
Q 015112          318 QHPHILSLNDTSEMISSSAAFARKFRQNALVLDKIDKELLGRKNGSFTPGAWCSGDPHCSKVGDPNKIKPGPGAERLRRL  397 (413)
Q Consensus       318 ~~P~~l~~~D~~~l~~S~alFARKF~~d~~vLd~Id~~ll~r~~~~~~~g~w~~~~~~c~~~~~~~~~~~~~~~~~~~~~  397 (413)
                      +||++|+.+|+++|++|+++|||||+.|++|||+||+++++|.+++++|||||.|.|||++|||+++|||||||+||++|
T Consensus       326 ~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~~~~c~~~~~~~~~~p~~~~~~~~~~  405 (421)
T PLN03183        326 QHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSGKPKCSRVGDPAKIKPGPGAQRLKGL  405 (421)
T ss_pred             CCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCCCCcccccCCcCccCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCCCCCCCC
Q 015112          398 VARLTMEAKRGLNQCT  413 (413)
Q Consensus       398 ~~~~~~~~~~~~~~~~  413 (413)
                      |++||++++||++||+
T Consensus       406 ~~~~~~~~~~~~~~c~  421 (421)
T PLN03183        406 VSRLVLEAKLGQNQCK  421 (421)
T ss_pred             HHHHhchhccccccCC
Confidence            9999999999999996

>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>PRK14716 bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		413
3otk_A		391	Structure And Mechanisim Of Core 2 Beta1,6-N- Acety		7e-13
2gak_A		391	X-ray Crystal Structure Of Murine Leukocyte-type Co		2e-12

>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase Length = 391

Back alignment and structure

Iteration: 1

Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 77/286 (26%), Positives = 122/286 (42%), Gaps = 42/286 (14%) Query: 83 LEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT 142 +E L R L+A+Y P+N Y +H+D +A EE A + + S NV+++++ V Sbjct: 96 IEMLDRLLRAIYMPQNFYCIHVDRKA--EESFLAAVQ----GIASCFDNVFVASQLESVV 149 Query: 143 YRGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHT 202 Y T V L+ L + + +W + INLS D+P+ T +++ S N +E Sbjct: 150 YASWTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLK-CSTGENNLETE 208 Query: 203 SHLGWKEEKRAMPLMVDPGLYMLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYC 262 KEE+ V G LT + I P P LF+GSA+ V++R +V Y Sbjct: 209 KMPPNKEERWKKRYAVVDG--KLTNTGIVKAPP----PLKTPLFSGSAYFVVTREYVGYV 262 Query: 263 IWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVPEF---VPTVVNHDL-------HYISW 312 + +N LM + SP+ + I +PE P+ +DL ++ W Sbjct: 263 L---ENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKW 319 Query: 313 D-----------NPPGQHPHILSL-----NDTSEMISSSAAFARKF 342 PP H+ S+ D S M+ FA KF Sbjct: 320 QYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKF 365

PyMOL of 3otk

>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2 B1,6-n- Acetylglucosaminyltransferase (c2gnt-l) Length = 391

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		413
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	4e-69
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391	Back alignment and structure

 Score =  222 bits (567), Expect = 4e-69
 Identities = 70/338 (20%), Positives = 125/338 (36%), Gaps = 44/338 (13%)

Query: 50  PNYAEMKVKQSEPAPSGPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAP 109
            ++   +    EP          AY +      +E L R L+A+Y P+N Y +H+D +A 
Sbjct: 64  ASFIRTRKYIVEPLTKEEVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAE 122

Query: 110 TEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRGPTMVANTLHACAILLKNSKDWDWF 169
                 +        + S   NV+++++   V Y   T V   L+    L + + +W + 
Sbjct: 123 ESFLAAV------QGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYL 176

Query: 170 INLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAMPLMVDPGLYMLTKSD 229
           INL   D+P+ T  +++      + + N          +E  +    +VD  L       
Sbjct: 177 INLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGI-- 234

Query: 230 IFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSP-ESYF 288
                 +   P    LF+GSA+ V++R +V Y +   +N     LM +     SP E  +
Sbjct: 235 -----VKAPPPLKTPLFSGSAYFVVTREYVGYVL---ENENIQKLMEWAQDTYSPDEFLW 286

Query: 289 QTV---------ICNVPEFVPTVVNHDLHYISWD-----------NPPGQHPH-----IL 323
            T+           +  ++  + +N    ++ W             PP    H     + 
Sbjct: 287 ATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVF 346

Query: 324 SLNDTSEMISSSAAFARKFRQNA-LVLDKIDKELLGRK 360
              D S M+     FA KF  +      +   E L RK
Sbjct: 347 GAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRRK 384

PyMOL of 2gak

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		413
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	100.0
3bcv_A		240	Putative glycosyltransferase protein; protein stru	80.05

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*	Back alignment and structure

Probab=100.00  E-value=1.4e-63  Score=508.33  Aligned_cols=278  Identities=24%  Similarity=0.325  Sum_probs=238.0

Q ss_pred             CCCCCcEEEEEEeeCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceeeecC
Q 015112           66 GPKIPRFAYLVSGSKGDLEKLWRTLQALYHPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVTYRG  145 (413)
Q Consensus        66 ~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~wgg  145 (413)
                      ++.+|||||+|++|+ |+++++||++++|||+|.||||+|+|++..++..++..      .++++||+|++++..|.|||
T Consensus        80 ~e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~------~~~f~NV~v~~~~~~v~WGg  152 (391)
T 2gak_A           80 EEVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGI------ASCFDNVFVASQLESVVYAS  152 (391)
T ss_dssp             HHHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHH------HHTCTTEEECSSCCCCCTTS
T ss_pred             cccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHH------HhcCCCEEEeccCcccccCC
Confidence            456799999999998 99999999999999999999999999998877776532      34789999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccchhHHHHHHhccCCCcceEEeecCCCCcceeccc--ccccCCCcc
Q 015112          146 PTMVANTLHACAILLKNSKDWDWFINLSASDYPLVTQDDLLYTFSGLSRKLNFIEHTSHLGWKEEKRAM--PLMVDPGLY  223 (413)
Q Consensus       146 ~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~~~i~~~f~~~~~~~nFIe~~~~~~wk~~~R~~--~~i~dpgl~  223 (413)
                      +|||+|+++||+.||+.+.+|||||||||+||||+|+++|.++|+. ++|+|||++.++.+|++. |.+  +.+.+++++
T Consensus       153 ~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~-~~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l~  230 (391)
T 2gak_A          153 WTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKC-STGENNLETEKMPPNKEE-RWKKRYAVVDGKLT  230 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHH-TTTCCBCCBEECCGGGSH-HHHEEEEEETTEEE
T ss_pred             chHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHh-cCCCceeeccCCCccccc-ceEeeeecccccee
Confidence            9999999999999998878999999999999999999999999986 479999999988788653 332  223333322


Q ss_pred             ccccccceeeccCCCCCCCeeeeccceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhHHHHHhcCC-------
Q 015112          224 MLTKSDIFWVTPRRTLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPESYFQTVICNVP-------  296 (413)
Q Consensus       224 ~~~k~~~~~~~~kR~~p~~~~l~~GS~W~~LsR~fvey~l~~~d~lpr~ll~yf~~~~~pDE~yFqTvl~Ns~-------  296 (413)
                             .+..++|.+|.++++++|||||+|||+||+||++  |+.++.+++||+++++|||+||||++.|..       
T Consensus       231 -------~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~  301 (391)
T 2gak_A          231 -------NTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPS  301 (391)
T ss_dssp             -------EEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCS
T ss_pred             -------eecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCcccc
Confidence                   2345678889899999999999999999999998  566888999999999999999999987642       


Q ss_pred             --CCCCccccCceeEEecCCCCC------CCCC----------ccChhhHHHHhcCCceEEeccCC--CHHHHHHHHHHH
Q 015112          297 --EFVPTVVNHDLHYISWDNPPG------QHPH----------ILSLNDTSEMISSSAAFARKFRQ--NALVLDKIDKEL  356 (413)
Q Consensus       297 --~f~~t~vn~~LRyi~W~~~~~------~~P~----------~l~~~D~~~l~~S~alFARKF~~--d~~vLd~Id~~l  356 (413)
                        +|+++++|+++|||+|+++.+      .||.          +|+.+|++.|.+|+++|||||++  |++|++|||+.|
T Consensus       302 ~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~l  381 (391)
T 2gak_A          302 SNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHL  381 (391)
T ss_dssp             SGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHHH
T ss_pred             ccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHHH
Confidence              344566799999999985322      2443          89999999999999999999997  789999999999


Q ss_pred             hCCCC
Q 015112          357 LGRKN  361 (413)
Q Consensus       357 l~r~~  361 (413)
                      .+|+-
T Consensus       382 ~~r~~  386 (391)
T 2gak_A          382 RRKAL  386 (391)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            88754

PyMOL of 2gak

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		413
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	86.11

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=86.11  E-value=3.7  Score=34.80  Aligned_cols=116  Identities=6%  Similarity=0.049  Sum_probs=67.5

Q ss_pred             CcEEEEEEeeCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChHHHHHHHhhhccCCCcccccceEeeCccceee---e
Q 015112           70 PRFAYLVSGSKGDLEKLWRTLQALY---HPRNRYVLHLDLEAPTEERLELASRVEKDPMFSKVGNVYMSTKANMVT---Y  143 (413)
Q Consensus        70 ~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~~~~~V~---w  143 (413)
                      |++..+|.++++ ...|++.|+.+-   .++..++| +|-.|++...+.++++.+       -.+|+++.......   -
T Consensus         1 P~vSiiip~yN~-~~~l~~~l~Si~~Qt~~~~eiiv-vdd~S~d~t~~~l~~~~~-------~~~i~~~~~~~~~~~~~~   71 (255)
T d1qg8a_           1 PKVSVIMTSYNK-SDYVAKSISSILSQTFSDFELFI-MDDNSNEETLNVIRPFLN-------DNRVRFYQSDISGVKERT   71 (255)
T ss_dssp             CCEEEEEEESSC-TTTHHHHHHHHHTCSCCCEEEEE-EECSCCHHHHHHHGGGGG-------STTEEEEECCCCSHHHHH
T ss_pred             CEEEEEEecCCC-HHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHHHHHhhh-------hccccccccccccccccc
Confidence            689999999984 678999888873   34445555 455566776666665432       34566654332110   0


Q ss_pred             cCccHHHHHHHHHHHHHhCCCCCceEEeccCCcccccc-hhHHHHHHhccCCCcceEE
Q 015112          144 RGPTMVANTLHACAILLKNSKDWDWFINLSASDYPLVT-QDDLLYTFSGLSRKLNFIE  200 (413)
Q Consensus       144 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~~~i~~~f~~~~~~~nFIe  200 (413)
                      ...+.-.|-=.|++.+     +-||++.|-+.|++..+ .+.+..+|.. +.+..++-
T Consensus        72 ~~~g~~~a~N~gi~~a-----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~-~~~~~~v~  123 (255)
T d1qg8a_          72 EKTRYAALINQAIEMA-----EGEYITYATDDNIYMPDRLLKMVRELDT-HPEKAVIY  123 (255)
T ss_dssp             SSCHHHHHHHHHHHHC-----CCSEEEEEETTEEECTTHHHHHHHHHHH-CTTCCEEE
T ss_pred             ccchhccccccccccc-----ccccccccccccccccchHHHHHHHHHh-CCCCCeEe
Confidence            1222222222222222     35899999999999755 4455566644 34556653

PyMOL of d1qg8a_