Citrus Sinensis ID: 015118

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMSYTNNFLIAN
ccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHccccccccccHHHHHHHHHcccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccccccccccccEEEEEccccccccccEEEEccccEEEEEEEccccccccccccccccEEEccccccccEEEEEEEEcccccccccccEEEEc
cccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHcccEEEHHHcHHHHHHHHccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccEEccccEccccccHHHccccccccccccccHHEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHcccccEEEEEEEcccHHHHHHHHHHHcccccEEcccccccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccccccEEEEEEEEccEEEEEEEEcccEEEEEcccEEEEc
mlekmetvDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQnlglngrtdpesfkscvplvthedlqpyiqriidgdispiltgkpittisrssgttqgkpkflpfndELMETTLQIFRTSYafrnrefpigkgkALQFIYgskqsktkgglnagtattnvyrsSTFKAEMKAMqsqccspdevifgpdfhQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKilkpnpelaDLIHKKcsglsnwyglipelfpnakylsgiMTGSMEHYLKKLRHYagdlplmsadygssegwiganvnpslppelatfavlpnigyfefipqrlgnlesqvlciepkpvgltevkvgEEYEIIVTNVAGMKMSYTNNFLIAN
mlekmetvdvdelieefetitkdaeRIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPIttisrssgttqgkPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKqsktkgglnagtatTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKpvgltevkvgeEYEIIVTnvagmkmsytnnflian
MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMSYTNNFLIAN
************LIEEFETIT**********LRKILE***SAEYLQNLGLNGRT**ESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTI***********KFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGS**************TTNVYR***F******MQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMSYTNNFLI**
*LEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTIS**********KFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMSYTNNFLIAN
MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKA*********CSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMSYTNNFLIAN
*LEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGN*ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMSYTNNFLIAN
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MLEKMETVDxxxxxxxxxxxxxxxxxxxxxTLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGMKMSYTNNFLIAN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query413 2.2.26 [Sep-21-2011]
Q6I581 581 Probable indole-3-acetic yes no 0.961 0.683 0.699 1e-174
Q9SKE2 575 Jasmonic acid-amido synth yes no 0.956 0.686 0.658 1e-158
Q5NAZ7462 Probable indole-3-acetic no no 0.973 0.870 0.619 1e-146
Q53P49 613 Probable indole-3-acetic no no 0.970 0.654 0.511 1e-123
O22190 595 Indole-3-acetic acid-amid no no 0.953 0.662 0.401 3e-80
O81829 612 Indole-3-acetic acid-amid no no 0.932 0.629 0.397 2e-78
O82333 590 Probable indole-3-acetic no no 0.903 0.632 0.401 2e-77
Q9LSQ4 612 Indole-3-acetic acid-amid no no 0.924 0.624 0.391 6e-76
Q9SZT9 549 Indole-3-acetic acid-amid no no 0.929 0.699 0.396 1e-75
Q0D4Z6 605 Probable indole-3-acetic no no 0.956 0.652 0.385 4e-75
>sp|Q6I581|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1 Back     alignment and function desciption
 Score =  611 bits (1575), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 281/402 (69%), Positives = 340/402 (84%), Gaps = 5/402 (1%)

Query: 5   METVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVP 64
           M     +E I EFE +T+DA R+Q++TL+KILE NASAEYLQN GL GRTD ES+KSC+P
Sbjct: 1   MTICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTDAESYKSCIP 60

Query: 65  LVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFR 124
           L  H D++PYIQRI+DGD SP++TG+PIT +S SSGTT GKPKF+PFNDEL+ETTLQI+R
Sbjct: 61  LCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYR 120

Query: 125 TSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCC 184
           TSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  MK +QSQCC
Sbjct: 121 TSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCC 180

Query: 185 SPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIRE 244
           SPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VWE+LC DIR+
Sbjct: 181 SPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRD 240

Query: 245 GVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTG 304
           GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNAKY+ GIMTG
Sbjct: 241 GVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTG 300

Query: 305 SMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP-- 362
           SME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +GYFEFIP  
Sbjct: 301 SMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLE 360

Query: 363 QRLGNL---ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGM 401
           + +G      + +  IE  PVGLTEV+VG+ YE+++TN AG+
Sbjct: 361 KPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGL 402
May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9SKE2|JAR1_ARATH Jasmonic acid-amido synthetase JAR1 OS=Arabidopsis thaliana GN=JAR1 PE=1 SV=2 Back     alignment and function description
>sp|Q5NAZ7|GH33_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2 Back     alignment and function description
>sp|Q53P49|GH312_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1 Back     alignment and function description
>sp|O22190|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1 Back     alignment and function description
>sp|O81829|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1 Back     alignment and function description
>sp|O82333|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSQ4|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZT9|GH32_ARATH Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=3 Back     alignment and function description
>sp|Q0D4Z6|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
307136360 575 auxin-regulated protein [Cucumis melo su 0.963 0.692 0.790 0.0
449432068 572 PREDICTED: probable indole-3-acetic acid 0.956 0.690 0.783 0.0
356571222 587 PREDICTED: probable indole-3-acetic acid 0.970 0.683 0.757 0.0
224064181 576 GH3 family protein [Populus trichocarpa] 0.958 0.687 0.769 0.0
118486804 576 unknown [Populus trichocarpa] 0.958 0.687 0.769 0.0
357512525 676 GH3 family protein [Medicago truncatula] 0.970 0.593 0.755 0.0
224127866 576 GH3 family protein [Populus trichocarpa] 0.963 0.690 0.776 0.0
356506052 571 PREDICTED: probable indole-3-acetic acid 0.951 0.688 0.758 0.0
356520302 582 PREDICTED: probable indole-3-acetic acid 0.970 0.689 0.754 0.0
383464620 576 auxin-responsive GH3 family protein [Hev 0.961 0.689 0.774 0.0
>gi|307136360|gb|ADN34174.1| auxin-regulated protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/401 (79%), Positives = 361/401 (90%), Gaps = 3/401 (0%)

Query: 1   MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFK 60
           MLEKME  D +++IE+FE +T+DAER+QRETL+KILEEN SAEYLQNLGLNGRTDP+SFK
Sbjct: 1   MLEKMEAFDGEKVIEQFEEMTRDAERVQRETLKKILEENGSAEYLQNLGLNGRTDPQSFK 60

Query: 61  SCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTL 120
            CVPLV+H+DL+ YIQRI DGD SPILTGKPI TIS SSGTT+G+PK +PFNDEL+ETT+
Sbjct: 61  DCVPLVSHDDLESYIQRIADGDSSPILTGKPIKTISLSSGTTKGRPKLIPFNDELLETTM 120

Query: 121 QIFRTSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQ 180
           QI+RTS+AFRN+E P+GKGKALQFIY SKQ KT GGL AGTATTNVYRS+ FK+ M+A+Q
Sbjct: 121 QIYRTSFAFRNKEVPLGKGKALQFIYSSKQFKTNGGLAAGTATTNVYRSAQFKSTMRAIQ 180

Query: 181 SQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCD 240
           SQCCSPDEVIFGPDFHQSLYCHLLCGLIFR+E++ VFSTFAHS+VH+FRTFE VWEELC 
Sbjct: 181 SQCCSPDEVIFGPDFHQSLYCHLLCGLIFRDEVEFVFSTFAHSIVHSFRTFEQVWEELCS 240

Query: 241 DIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSG 300
           +IR+GVLSS +T PSIRAAMSK+LKPNPELADLI++KC GLSNWYGLIPELFPNAKY+ G
Sbjct: 241 NIRDGVLSSWVTAPSIRAAMSKLLKPNPELADLIYRKCEGLSNWYGLIPELFPNAKYIYG 300

Query: 301 IMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEF 360
           IMTGSME YLKKLRHYAG LPLMSADYGSSEGW+GANVNP LPPE+ATFAVLPNIGYFEF
Sbjct: 301 IMTGSMEPYLKKLRHYAGHLPLMSADYGSSEGWVGANVNPMLPPEMATFAVLPNIGYFEF 360

Query: 361 IPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGM 401
           IP +  N + Q      KP+GLTEVK+GEEYEIIVTNVAG+
Sbjct: 361 IPLK-ENAQGQHQ--RNKPIGLTEVKIGEEYEIIVTNVAGL 398

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449432068|ref|XP_004133822.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus] gi|449477906|ref|XP_004155158.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356571222|ref|XP_003553778.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] Back     alignment and taxonomy information
>gi|224064181|ref|XP_002301399.1| GH3 family protein [Populus trichocarpa] gi|222843125|gb|EEE80672.1| GH3 family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486804|gb|ABK95237.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357512525|ref|XP_003626551.1| GH3 family protein [Medicago truncatula] gi|355501566|gb|AES82769.1| GH3 family protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224127866|ref|XP_002320183.1| GH3 family protein [Populus trichocarpa] gi|222860956|gb|EEE98498.1| GH3 family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356506052|ref|XP_003521802.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] Back     alignment and taxonomy information
>gi|356520302|ref|XP_003528802.1| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Glycine max] Back     alignment and taxonomy information
>gi|383464620|gb|AFH35030.1| auxin-responsive GH3 family protein [Hevea brasiliensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
UNIPROTKB|Q6I581 581 GH3.5 "Probable indole-3-aceti 0.961 0.683 0.699 1.3e-157
UNIPROTKB|Q5NAZ7462 GH3.3 "Probable indole-3-aceti 0.956 0.854 0.631 1.5e-136
UNIPROTKB|Q53P49 613 GH3.12 "Probable indole-3-acet 0.874 0.588 0.551 5.1e-106
TAIR|locus:2125571 591 DFL2 "DWARF IN LIGHT 2" [Arabi 0.958 0.670 0.508 1.6e-104
TAIR|locus:2058588 595 GH3.3 [Arabidopsis thaliana (t 0.953 0.662 0.401 1.3e-75
TAIR|locus:2131739 612 WES1 [Arabidopsis thaliana (ta 0.932 0.629 0.397 3.1e-74
TAIR|locus:2060500 590 GH3.1 "AT2G14960" [Arabidopsis 0.900 0.630 0.402 1.6e-72
TAIR|locus:2147314 612 DFL1 "DWARF IN LIGHT 1" [Arabi 0.937 0.632 0.387 4.1e-72
UNIPROTKB|P0C0M2 614 GH3.2 "Probable indole-3-aceti 0.941 0.633 0.382 2.6e-70
TAIR|locus:2008134 573 AT1G48660 "AT1G48660" [Arabido 0.917 0.661 0.395 7e-70
UNIPROTKB|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
 Identities = 281/402 (69%), Positives = 340/402 (84%)

Query:     5 METVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVP 64
             M     +E I EFE +T+DA R+Q++TL+KILE NASAEYLQN GL GRTD ES+KSC+P
Sbjct:     1 MTICSCEETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNFGLGGRTDAESYKSCIP 60

Query:    65 LVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFR 124
             L  H D++PYIQRI+DGD SP++TG+PIT +S SSGTT GKPKF+PFNDEL+ETTLQI+R
Sbjct:    61 LCVHNDIEPYIQRIVDGDTSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQIYR 120

Query:   125 TSYAFRNREFPIGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMKAMQSQCC 184
             TSYAFRNRE+PIG+GKALQF+YGSKQ  TKGG+ A TATTN+YR   +K  MK +QSQCC
Sbjct:   121 TSYAFRNREYPIGQGKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCC 180

Query:   185 SPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIRE 244
             SPDEVIFGPDFHQSLYCHLLCGLI+ EE+  VFSTFAHSLVHAF+TFE VWE+LC DIR+
Sbjct:   181 SPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRD 240

Query:   245 GVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTG 304
             GVLS ++T PSIR A+SKILKPNPELAD I+KKC GLSNWYG+IP L+PNAKY+ GIMTG
Sbjct:   241 GVLSKKVTAPSIREAVSKILKPNPELADSIYKKCIGLSNWYGVIPALWPNAKYVYGIMTG 300

Query:   305 SMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIP-- 362
             SME YLKKLRHYAG+LPL+SADYG+SEGW+G+N++P++PPE  T+AVLP +GYFEFIP  
Sbjct:   301 SMEPYLKKLRHYAGNLPLISADYGASEGWVGSNIDPTVPPEQVTYAVLPQVGYFEFIPLE 360

Query:   363 QRLGNL---ESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGM 401
             + +G      + +  IE  PVGLTEV+VG+ YE+++TN AG+
Sbjct:   361 KPIGEETENSASIHYIESDPVGLTEVEVGKIYEVVITNFAGL 402
GO:0009416 "response to light stimulus" evidence=IC
GO:0009733 "response to auxin stimulus" evidence=IC
UNIPROTKB|Q5NAZ7 GH3.3 "Probable indole-3-acetic acid-amido synthetase GH3.3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q53P49 GH3.12 "Probable indole-3-acetic acid-amido synthetase GH3.12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2008134 AT1G48660 "AT1G48660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SKE2JAR1_ARATH6, ., 3, ., 2, ., -0.65840.95640.6869yesno
Q6I581GH35_ORYSJ6, ., 3, ., 2, ., -0.69900.96120.6833yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
4339756
OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed; May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin (By similarity) (581 aa)
(Oryza sativa Japonica)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
pfam03321 513 pfam03321, GH3, GH3 auxin-responsive promoter 1e-135
PLN02620 612 PLN02620, PLN02620, indole-3-acetic acid-amido syn 1e-102
PLN02247 606 PLN02247, PLN02247, indole-3-acetic acid-amido syn 2e-95
PLN02249 597 PLN02249, PLN02249, indole-3-acetic acid-amido syn 1e-90
>gnl|CDD|217492 pfam03321, GH3, GH3 auxin-responsive promoter Back     alignment and domain information 
 Score =  398 bits (1024), Expect = e-135
 Identities = 160/396 (40%), Positives = 212/396 (53%), Gaps = 51/396 (12%)

Query: 14  IEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQP 73
           ++E E  T +A  +Q E LR+ILE NA  EY +  G +G T  + FK  VP+VT+EDL+P
Sbjct: 3   LKEIELFTSNAVEVQEEVLREILERNADTEYGKKYGFSGITSYDDFKKRVPVVTYEDLKP 62

Query: 74  YIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAF--RN 131
           YI+RI +G+ S IL   PIT  + SSGTT GK KF+P  DEL+E    +   +      N
Sbjct: 63  YIERIANGEPS-ILWPGPITYFALSSGTTGGKSKFIPVTDELLERFHFLGALAVLLLYLN 121

Query: 132 REFPI----GKGKALQFIYGSKQSKTKGGLNAGTATTNVYR--SSTFKAEMKAMQSQCCS 185
              P     GK   L   +   + KT GG+ AG  +T +YR     FK           S
Sbjct: 122 NNPPGLFFEGKSLGLGGSFVKPELKTPGGIPAGDLSTILYRNLPFWFK--------LYTS 173

Query: 186 PDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREG 245
           PDEVI   D  QS YC LLCGLI RE++  +    A  LV   R  E  W+ELC DIR G
Sbjct: 174 PDEVILCIDDWQSKYCALLCGLI-REDVGRISGVPAWMLVLLIRFLEKHWKELCTDIRTG 232

Query: 246 VLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGS 305
                             L+PNPELADLI ++CS       +I EL+PN KY+     GS
Sbjct: 233 T-----------------LRPNPELADLIEQECS------KIIKELWPNLKYVFVWGGGS 269

Query: 306 MEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRL 365
           ME Y  KL    G LPL S  Y +SEG+ G N++    PE  ++ ++PN G+FEFIP   
Sbjct: 270 MEPYRPKLEKLLGGLPLYSETYAASEGFFGINLD----PEDVSYTLMPNSGFFEFIP--- 322

Query: 366 GNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGM 401
                +    +PK V L EV++G+ YE+++T  AG+
Sbjct: 323 ---VDEDGDEDPKIVDLVEVELGKNYELVITTFAGL 355

Length = 513
>gnl|CDD|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase Back     alignment and domain information
>gnl|CDD|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 413
PLN02620 612 indole-3-acetic acid-amido synthetase 100.0
PLN02247 606 indole-3-acetic acid-amido synthetase 100.0
PLN02249 597 indole-3-acetic acid-amido synthetase 100.0
PF03321 528 GH3: GH3 auxin-responsive promoter; InterPro: IPR0 100.0
COG1541 438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 99.73
TIGR03335445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 99.7
TIGR02304 430 aden_form_hyp probable adenylate-forming enzyme. M 99.63
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 99.61
PRK06334539 long chain fatty acid--[acyl-carrier-protein] liga 97.88
PRK09274552 peptide synthase; Provisional 97.82
PF00501417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 97.81
PRK06187521 long-chain-fatty-acid--CoA ligase; Validated 97.81
PRK07514504 malonyl-CoA synthase; Validated 97.77
PRK04813503 D-alanine--poly(phosphoribitol) ligase subunit 1; 97.77
TIGR01733408 AA-adenyl-dom amino acid adenylation domain. This 97.68
PRK09088488 acyl-CoA synthetase; Validated 97.67
PRK07788549 acyl-CoA synthetase; Validated 97.65
PRK07529632 AMP-binding domain protein; Validated 97.64
PRK13295547 cyclohexanecarboxylate-CoA ligase; Reviewed 97.63
PRK06155542 crotonobetaine/carnitine-CoA ligase; Provisional 97.61
PRK06145497 acyl-CoA synthetase; Validated 97.6
PLN02574560 4-coumarate--CoA ligase-like 97.57
PRK06164540 acyl-CoA synthetase; Validated 97.55
PLN02860563 o-succinylbenzoate-CoA ligase 97.53
PRK08316523 acyl-CoA synthetase; Validated 97.51
PRK07638 487 acyl-CoA synthetase; Validated 97.5
PRK04319570 acetyl-CoA synthetase; Provisional 97.48
PRK086331146 2-acyl-glycerophospho-ethanolamine acyltransferase 97.47
TIGR03205541 pimA dicarboxylate--CoA ligase PimA. PimA, a membe 97.46
PRK06060 705 acyl-CoA synthetase; Validated 97.46
PRK07656513 long-chain-fatty-acid--CoA ligase; Validated 97.44
PRK05852534 acyl-CoA synthetase; Validated 97.43
PRK05677562 long-chain-fatty-acid--CoA ligase; Validated 97.43
PRK00174637 acetyl-CoA synthetase; Provisional 97.42
PRK10946536 entE enterobactin synthase subunit E; Provisional 97.4
PRK06839496 acyl-CoA synthetase; Validated 97.39
PRK07786 542 long-chain-fatty-acid--CoA ligase; Validated 97.36
PRK05605573 long-chain-fatty-acid--CoA ligase; Validated 97.35
TIGR01734502 D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig 97.34
PRK08180614 feruloyl-CoA synthase; Reviewed 97.34
PRK08314546 long-chain-fatty-acid--CoA ligase; Validated 97.3
TIGR03208538 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. 97.29
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 97.27
PTZ00237647 acetyl-CoA synthetase; Provisional 97.26
TIGR02188625 Ac_CoA_lig_AcsA acetate--CoA ligase. This model de 97.25
PRK12467 3956 peptide synthase; Provisional 97.24
PRK08279600 long-chain-acyl-CoA synthetase; Validated 97.24
PRK12583558 acyl-CoA synthetase; Provisional 97.22
PRK10524629 prpE propionyl-CoA synthetase; Provisional 97.22
PRK07867529 acyl-CoA synthetase; Validated 97.19
PRK07787471 acyl-CoA synthetase; Validated 97.19
TIGR03098515 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor 97.17
PLN02736 651 long-chain acyl-CoA synthetase 97.16
COG1022 613 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) 97.16
PRK13382537 acyl-CoA synthetase; Provisional 97.15
COG0365528 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l 97.14
PRK07059557 Long-chain-fatty-acid--CoA ligase; Validated 97.13
TIGR02316628 propion_prpE propionate--CoA ligase. This family c 97.11
PLN02330546 4-coumarate--CoA ligase-like 1 97.08
PLN02861 660 long-chain-fatty-acid-CoA ligase 97.06
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 97.06
PLN02614 666 long-chain acyl-CoA synthetase 97.05
TIGR02275527 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot 97.02
PRK08974560 long-chain-fatty-acid--CoA ligase; Validated 97.0
PRK13388540 acyl-CoA synthetase; Provisional 97.0
PRK12582624 acyl-CoA synthetase; Provisional 97.0
PRK07470528 acyl-CoA synthetase; Validated 96.99
PRK06710563 long-chain-fatty-acid--CoA ligase; Validated 96.95
PRK12467 3956 peptide synthase; Provisional 96.94
PRK08751560 putative long-chain fatty acyl CoA ligase; Provisi 96.94
PRK08315559 AMP-binding domain protein; Validated 96.94
PRK12316 5163 peptide synthase; Provisional 96.94
TIGR01923436 menE O-succinylbenzoate-CoA ligase. This model rep 96.9
PRK05857540 acyl-CoA synthetase; Validated 96.87
COG0318 534 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l 96.84
PRK12316 5163 peptide synthase; Provisional 96.83
PRK08308414 acyl-CoA synthetase; Validated 96.78
PRK12492562 long-chain-fatty-acid--CoA ligase; Provisional 96.77
TIGR02262508 benz_CoA_lig benzoate-CoA ligase family. Character 96.74
PRK03640483 O-succinylbenzoic acid--CoA ligase; Provisional 96.72
PLN02387 696 long-chain-fatty-acid-CoA ligase family protein 96.69
PRK12406509 long-chain-fatty-acid--CoA ligase; Provisional 96.65
PRK06188524 acyl-CoA synthetase; Validated 96.59
PTZ00342 746 acyl-CoA synthetase; Provisional 96.59
PLN02246537 4-coumarate--CoA ligase 96.55
PRK06087547 short chain acyl-CoA synthetase; Reviewed 96.53
PRK13383 516 acyl-CoA synthetase; Provisional 96.51
PRK08043718 bifunctional acyl-[acyl carrier protein] synthetas 96.5
PLN02430 660 long-chain-fatty-acid-CoA ligase 96.49
PLN03051499 acyl-activating enzyme; Provisional 96.43
PRK05691 4334 peptide synthase; Validated 96.25
PLN02654666 acetate-CoA ligase 96.23
PTZ00216 700 acyl-CoA synthetase; Provisional 96.21
PRK05691 4334 peptide synthase; Validated 96.17
PLN03102579 acyl-activating enzyme; Provisional 96.14
PRK068141140 acylglycerophosphoethanolamine acyltransferase; Pr 95.91
PRK06178567 acyl-CoA synthetase; Validated 95.81
PRK03584655 acetoacetyl-CoA synthetase; Provisional 95.68
PRK07768545 long-chain-fatty-acid--CoA ligase; Validated 95.49
PRK08276502 long-chain-fatty-acid--CoA ligase; Validated 95.38
PRK06018542 putative acyl-CoA synthetase; Provisional 95.31
KOG1179649 consensus Very long-chain acyl-CoA synthetase/fatt 94.28
KOG1256 691 consensus Long-chain acyl-CoA synthetases (AMP-for 92.29
KOG1176 537 consensus Acyl-CoA synthetase [Lipid transport and 91.76
PF04443365 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR 89.78
COG1021 542 EntE Peptide arylation enzymes [Secondary metaboli 88.1
PRK07868 994 acyl-CoA synthetase; Validated 87.16
TIGR02372386 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv 86.91
PRK13391 511 acyl-CoA synthetase; Provisional 85.07
PRK13390501 acyl-CoA synthetase; Provisional 84.06
PRK07798533 acyl-CoA synthetase; Validated 83.75
PRK07824358 O-succinylbenzoic acid--CoA ligase; Provisional 81.42
>PLN02620 indole-3-acetic acid-amido synthetase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-101  Score=807.06  Aligned_cols=400  Identities=39%  Similarity=0.676  Sum_probs=376.5

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHHHhcCCCCCCCcccccccccceecCCchhhHhhhccCCCCCcccC
Q 015118           10 VDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTDPESFKSCVPLVTHEDLQPYIQRIIDGDISPILTG   89 (413)
Q Consensus        10 ~~~~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~I~t~edFr~~vPi~~Yed~~pyi~r~~~Ge~~~vl~~   89 (413)
                      +++.++.++..++||+++|+++|++||++|++|+|||+|||++|+++++||++|||++|||++|||+||++||.++|||+
T Consensus        21 ~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~s~vL~~  100 (612)
T PLN02620         21 NKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYEDIQPDINRIANGDTSPILCS  100 (612)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCCCCccCC
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999996799999


Q ss_pred             CCcceeecccccCCCCcccccCchHHHHHHHHHHHHhhhhcccccc-cCCCceeEEEeccceeeecCCcceeccccceec
Q 015118           90 KPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYR  168 (413)
Q Consensus        90 ~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~~gk~l~~~~~~~~~~t~~Gip~g~~S~~~~~  168 (413)
                      +||.+|++|||||+|++|+||+|+++++.++.++..|..++++++| +..||.+|+++.+.+.+|++|||+|++|+.+++
T Consensus       101 ~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~y~  180 (612)
T PLN02620        101 KPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK  180 (612)
T ss_pred             CChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccccchhhh
Confidence            9999999999999889999999999999888888999999999888 889999999999889999999999999999999


Q ss_pred             ChhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHHHHHHHhHHHHHHHHHHHhhcCccc
Q 015118          169 SSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEELCDDIREGVLS  248 (413)
Q Consensus       169 ~~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l~~~~~~le~~w~~l~~dI~~Gt~~  248 (413)
                      +..|+.+|......|++|.+++.++|..+++||||||+|.++++|..++++|+++|+.++++|+++|++||+||++|+++
T Consensus       181 s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~ls  260 (612)
T PLN02620        181 SSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGTID  260 (612)
T ss_pred             hhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99998877665678999999999999999999999999999999988888888889999999999999999999999999


Q ss_pred             cccchhHHHHHHHhhcCCChHhHHHHHHHhccCccccccccccCCCcceeeeeccchhhHHHHHhhhhcCCCCceecccC
Q 015118          249 SRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHYAGDLPLMSADYG  328 (413)
Q Consensus       249 ~~~~~~~~r~~l~~~l~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~~~y~~~l~~~~~~vpi~~~~Y~  328 (413)
                      ++++++++|++|.+.|+|||++|+.|+++|++. ||+|++++|||||++|+||+||+|++|+++|+.|+||+|+++.+|+
T Consensus       261 ~~itd~~~R~av~~~L~p~pelA~~i~~~c~~~-~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~  339 (612)
T PLN02620        261 SQITDPSVREAVMKILKPDPKLADFVEAECRKE-SWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYA  339 (612)
T ss_pred             ccCCCHHHHHHHHhhcCCCHHHHHHHHHHhccc-cccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCcccccccc
Confidence            999999999999999999999999999999986 8999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCCCCCcceeeeeecCCceeeeeeccccCCCCcc----------cccCCccccceeeeecceEEEEEeec
Q 015118          329 SSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQV----------LCIEPKPVGLTEVKVGEEYEIIVTNV  398 (413)
Q Consensus       329 aSEg~i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~~----------~~~~~~~l~~~ele~G~~YelVvTt~  398 (413)
                      ||||+||||++|.|+++.+.|+|.|+++||||||++  +.+..-          ..+++++|+++|||+|++|||||||.
T Consensus       340 ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~  417 (612)
T PLN02620        340 SSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVH--RNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTY  417 (612)
T ss_pred             ccceEEEeccCCCCCcccceeeecCCcEEEEEeecc--CcccccccccccccccccccCccccHHHccCCCeEEEEEEec
Confidence            999999999999998888899999999999999987  421100          01457799999999999999999999


Q ss_pred             cceeeeeeccceec
Q 015118          399 AGMKMSYTNNFLIA  412 (413)
Q Consensus       399 ~GLyRY~~gDvv~~  412 (413)
                      +||||||+||||++
T Consensus       418 ~GLyRYrlGDvv~V  431 (612)
T PLN02620        418 AGLYRYRVGDVLRV  431 (612)
T ss_pred             CceEEEecCCEEEE
Confidence            99999999999986

>PLN02247 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02249 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PRK09274 peptide synthase; Provisional Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07514 malonyl-CoA synthase; Validated Back     alignment and domain information
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>TIGR01733 AA-adenyl-dom amino acid adenylation domain Back     alignment and domain information
>PRK09088 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07788 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07529 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>PRK06145 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02574 4-coumarate--CoA ligase-like Back     alignment and domain information
>PRK06164 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02860 o-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK08316 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07638 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK04319 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR03205 pimA dicarboxylate--CoA ligase PimA Back     alignment and domain information
>PRK06060 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05852 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK00174 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK10946 entE enterobactin synthase subunit E; Provisional Back     alignment and domain information
>PRK06839 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>PRK08180 feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PTZ00237 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK08279 long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12583 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK10524 prpE propionyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07867 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07787 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Back     alignment and domain information
>PLN02736 long-chain acyl-CoA synthetase Back     alignment and domain information
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>PRK13382 acyl-CoA synthetase; Provisional Back     alignment and domain information
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR02316 propion_prpE propionate--CoA ligase Back     alignment and domain information
>PLN02330 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>PLN02861 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PLN02614 long-chain acyl-CoA synthetase Back     alignment and domain information
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK13388 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK12582 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07470 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>PRK08315 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>TIGR01923 menE O-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK05857 acyl-CoA synthetase; Validated Back     alignment and domain information
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK08308 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family Back     alignment and domain information
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PLN02387 long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK06188 acyl-CoA synthetase; Validated Back     alignment and domain information
>PTZ00342 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02246 4-coumarate--CoA ligase Back     alignment and domain information
>PRK06087 short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>PRK13383 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>PLN02430 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PLN03051 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PLN02654 acetate-CoA ligase Back     alignment and domain information
>PTZ00216 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PLN03102 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK06178 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK03584 acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06018 putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] Back     alignment and domain information
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] Back     alignment and domain information
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria Back     alignment and domain information
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK07868 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>PRK13391 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK13390 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07798 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
4epl_A 581 Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J 1e-159
4b2g_A 609 Crystal Structure Of An Indole-3-acetic Acid Amido 5e-78
4ewv_A 581 Crystal Structure Of Gh3.12 In Complex With Ampcpp 3e-73
4eq4_A 581 Crystal Structure Of Seleno-Methionine Derivatized 3e-70
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581 Back     alignment and structure 
Iteration: 1

 Score =  559 bits (1440), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/404 (65%), Positives = 329/404 (81%), Gaps = 9/404 (2%)
Query: 1   MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-S 58
           MLEK+ET D++ +I+EF+ +T++A ++Q++TL++IL +N SA YLQN GLNG  TDPE +
Sbjct: 7   MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA 66
Query: 59  FKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118
           FKS VPLVT  +L+PYI+R++DGD SPILTG P+  IS SSGT+QG+PKF+PF DELME 
Sbjct: 67  FKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126
Query: 119 TLQIFRTSYAFRNREFPIG-KGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMK 177
           TLQ+FRT++AFRNR+FPI   GKALQFI+ SKQ  + GG+  GTATTNVYR+  FKA MK
Sbjct: 127 TLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMK 186
Query: 178 AMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237
           ++ S  CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE VWEE
Sbjct: 187 SITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246
Query: 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKY 297
           +  DI++GVLS+RITVPS+R AMSK+L PNPELA+ I  KC  LSNWYGLIP LFPNAKY
Sbjct: 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKY 306
Query: 298 LSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 357
           + GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN+GY
Sbjct: 307 VYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGY 366
Query: 358 FEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGM 401
           FEF+P       S+    E KPVGLT+VK+GEEYE+++TN AG+
Sbjct: 367 FEFLPV------SETGEGEEKPVGLTQVKIGEEYEVVITNYAGL 404
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609 Back     alignment and structure
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581 Back     alignment and structure
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
4epl_A 581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 1e-112
4eql_A 581 4-substituted benzoates-glutamate ligase GH3.12; f 1e-94
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581 Back     alignment and structure
 Score =  339 bits (870), Expect = e-112
 Identities = 261/404 (64%), Positives = 323/404 (79%), Gaps = 9/404 (2%)

Query: 1   MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGRTD--PES 58
           MLEK+ET D++ +I+EF+ +T++A ++Q++TL++IL +N SA YLQN GLNG      E+
Sbjct: 7   MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEA 66

Query: 59  FKSCVPLVTHEDLQPYIQRIIDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMET 118
           FKS VPLVT  +L+PYI+R++DGD SPILTG P+  IS SSGT+QG+PKF+PF DELME 
Sbjct: 67  FKSMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126

Query: 119 TLQIFRTSYAFRNREFP-IGKGKALQFIYGSKQSKTKGGLNAGTATTNVYRSSTFKAEMK 177
           TLQ+FRT++AFRNR+FP    GKALQFI+ SKQ  + GG+  GTATTNVYR+  FKA MK
Sbjct: 127 TLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMK 186

Query: 178 AMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWEE 237
           ++ S  CSPDEVIF PD HQ+LYCHLL G++FR+++Q VF+ FAH LVHAFRTFE VWEE
Sbjct: 187 SITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEE 246

Query: 238 LCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKY 297
           +  DI++GVLS+RITVPS+R AMSK+L PNPELA+ I  KC  LSNWYGLIP LFPNAKY
Sbjct: 247 IVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKY 306

Query: 298 LSGIMTGSMEHYLKKLRHYAGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGY 357
           + GIMTGSME Y+ KLRHYAGDLPL+S DYGSSEGWI ANV P L PE ATFAV+PN+GY
Sbjct: 307 VYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGY 366

Query: 358 FEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVTNVAGM 401
           FEF+P             E KPVGLT+VK+GEEYE+++TN AG+
Sbjct: 367 FEFLPVSETGEG------EEKPVGLTQVKIGEEYEVVITNYAGL 404
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
4epl_A 581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 100.0
4eql_A 581 4-substituted benzoates-glutamate ligase GH3.12; f 100.0
4b2g_A 609 GH3-1 auxin conjugating enzyme; signaling protein, 100.0
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.54
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 99.53
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 99.5
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 99.41
3ivr_A 509 Putative long-chain-fatty-acid COA ligase; structu 98.31
3e7w_A 511 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.24
3etc_A 580 AMP-binding protein; adenylate-forming acyl-COA sy 98.21
2d1s_A 548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 98.2
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.14
3fce_A 512 D-alanine--poly(phosphoribitol) ligase subunit 1; 98.13
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 98.1
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 98.06
3rix_A 550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 98.0
3ni2_A 536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 97.99
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 97.99
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 97.92
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 97.88
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 97.8
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 97.79
3kxw_A 590 Saframycin MX1 synthetase B; fatty acid AMP ligase 97.78
2v7b_A 529 Benzoate-coenzyme A ligase; benzoate oxidation, be 97.75
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 97.72
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 97.71
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 97.7
3rg2_A 617 Enterobactin synthase component E (ENTE), 2,3-DIH 97.68
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 97.65
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 97.6
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 97.6
4gr5_A570 Non-ribosomal peptide synthetase; MBTH-like domain 97.6
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 97.57
4gs5_A358 Acyl-COA synthetase (AMP-forming)/AMP-acid ligase 97.44
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 97.44
4dg8_A 620 PA1221; ANL superfamily, adenylation domain, pepti 97.43
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 97.4
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 97.09
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 96.61
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=3.3e-103  Score=825.77  Aligned_cols=405  Identities=65%  Similarity=1.096  Sum_probs=374.2

Q ss_pred             CcccccccChHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHHHhcCCCCC-CCcc-cccccccceecCCchhhHhhh
Q 015118            1 MLEKMETVDVDELIEEFETITKDAERIQRETLRKILEENASAEYLQNLGLNGR-TDPE-SFKSCVPLVTHEDLQPYIQRI   78 (413)
Q Consensus         1 ~~~~~~~~~~~~~~~~f~~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~I-~t~e-dFr~~vPi~~Yed~~pyi~r~   78 (413)
                      |+|||+..++++.++.|++.|+||.++|+++|++||++|++|+|||+|||++| +|++ |||++|||++|||++||||||
T Consensus         7 ~~~~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi   86 (581)
T 4epl_A            7 MLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRM   86 (581)
T ss_dssp             ------CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHH
T ss_pred             hhhcccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999 9999 999999999999999999999


Q ss_pred             ccCCCCCcccCCCcceeecccccCCCCcccccCchHHHHHHHHHHHHhhhhcccccc-cC-CCceeEEEeccceeeecCC
Q 015118           79 IDGDISPILTGKPITTISRSSGTTQGKPKFLPFNDELMETTLQIFRTSYAFRNREFP-IG-KGKALQFIYGSKQSKTKGG  156 (413)
Q Consensus        79 ~~Ge~~~vl~~~pv~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p-~~-~gk~l~~~~~~~~~~t~~G  156 (413)
                      ++||.++|||++||.+|++|||||+|++|+||+|+++++.+++++..|..++++ +| +. .||+|+|++++++.+|++|
T Consensus        87 ~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~~G  165 (581)
T 4epl_A           87 VDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYISTGG  165 (581)
T ss_dssp             HTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECTTS
T ss_pred             HCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCCCC
Confidence            999978999999999999999999999999999999999987777777777766 66 87 8999998889999999999


Q ss_pred             cceeccccceecChhhHHHHHHHhcCCCCCCeeEeCCchhhhHHHHHhhhccccccchhhhhhhhhHHHHHHHhHHHHHH
Q 015118          157 LNAGTATTNVYRSSTFKAEMKAMQSQCCSPDEVIFGPDFHQSLYCHLLCGLIFREEIQLVFSTFAHSLVHAFRTFELVWE  236 (413)
Q Consensus       157 ip~g~~S~~~~~~~~f~~~p~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~aL~~~~~l~~i~~~~~~~l~~~~~~le~~w~  236 (413)
                      +|+|++|++.+++.+|+.+|.++...|++|.+++.++|..+++||||||||+++++|.+|+++||++|+.+++.|+++|+
T Consensus       166 i~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We  245 (581)
T 4epl_A          166 VPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWE  245 (581)
T ss_dssp             CEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             ceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccccccchhHHHHHHHhhcCCChHhHHHHHHHhccCccccccccccCCCcceeeeeccchhhHHHHHhhhh
Q 015118          237 ELCDDIREGVLSSRITVPSIRAAMSKILKPNPELADLIHKKCSGLSNWYGLIPELFPNAKYLSGIMTGSMEHYLKKLRHY  316 (413)
Q Consensus       237 ~l~~dI~~Gt~~~~~~~~~~r~~l~~~l~~~p~rA~~L~~~~~~~~g~~gi~~~lWP~L~~i~~~~~g~~~~y~~~l~~~  316 (413)
                      ++|+||++|+++++++++++|++|+++|+|+|++|++|+++|++.+.|+|++++|||||++|.||++|+|++|+++|++|
T Consensus       246 ~l~~dI~~gtl~~~it~~~~R~~l~~v~~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~  325 (581)
T 4epl_A          246 EIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHY  325 (581)
T ss_dssp             HHHHHHHHTCCCTTCCCHHHHHHHHTTCCCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHH
T ss_pred             HHHHHHHhcCCCcCCCCHHHHHHHhCCCCCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987213889999999999999999999999999999999


Q ss_pred             cCCCCceecccCCCccccccccCCCCCCcceeeeeecCCceeeeeeccccCCCCcccccCCccccceeeeecceEEEEEe
Q 015118          317 AGDLPLMSADYGSSEGWIGANVNPSLPPELATFAVLPNIGYFEFIPQRLGNLESQVLCIEPKPVGLTEVKVGEEYEIIVT  396 (413)
Q Consensus       317 ~~~vpi~~~~Y~aSEg~i~i~~~~~~~~~~~~~~l~p~~~ffEFip~~~~e~~~~~~~~~~~~l~~~ele~G~~YelVvT  396 (413)
                      +|++|+++.+|+||||+||||+++.++++..+|+|+|+.+||||||++  +.++    +++++++++|||+|++||||||
T Consensus       326 ~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~--~~~~----~~~~~v~l~eve~G~~YelviT  399 (581)
T 4epl_A          326 AGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS--ETGE----GEEKPVGLTQVKIGEEYEVVIT  399 (581)
T ss_dssp             HTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------CCCEEGGGCCTTCEEEEEEE
T ss_pred             cCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEecc--cccC----CCCceeeHHHcCCCCeEEEEEe
Confidence            999999999999999999999999998877889999999999999988  6554    5789999999999999999999


Q ss_pred             eccceeeeeeccceec
Q 015118          397 NVAGMKMSYTNNFLIA  412 (413)
Q Consensus       397 t~~GLyRY~~gDvv~~  412 (413)
                      |.+|||||++||+|++
T Consensus       400 t~~GL~RYr~GD~v~v  415 (581)
T 4epl_A          400 NYAGLYRYRLGDVVKV  415 (581)
T ss_dssp             STTSCSSEEEEEEEEE
T ss_pred             eccceeeEEcCCEEEE
Confidence            9999999999999986
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Back     alignment and structure
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Back     alignment and structure
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Back     alignment and structure
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
d1pg4a_643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 97.59
d1amua_514 Phenylalanine activating domain of gramicidin synt 97.19
d1lcia_541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 96.99
d1ry2a_640 Acetyl-CoA synthetase {Baker's yeast (Saccharomyce 96.39
d1mdba_536 Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil 95.31
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=97.59  E-value=6.1e-05  Score=77.70  Aligned_cols=27  Identities=30%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             CCCcceeecccccCCCCcccccCchHHH
Q 015118           89 GKPITTISRSSGTTQGKPKFLPFNDELM  116 (413)
Q Consensus        89 ~~pv~~f~~TSGTT~G~~K~IP~T~~~~  116 (413)
                      ++-+.+...||||| |+||-|..|...+
T Consensus       251 ~dd~a~IlyTSGTT-G~PKgV~~sh~~~  277 (643)
T d1pg4a_         251 AEDPLFILYTSGST-GKPKGVLHTTGGY  277 (643)
T ss_dssp             TTSEEEEEEECCSS-SSCEEEEEESHHH
T ss_pred             CCCeEEEEeCCCcc-cCCCEEEEccHHH
Confidence            33345778899999 9999999998753
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure