Citrus Sinensis ID: 015120

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY
ccccccccccEEEEEEEccccHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEcccccccccccccccccccEEEEcccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEccccEEEcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
ccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccccccc
mskevedsELADVAAVSAGNNYEVGNMIAEAMSKVGRkgvvtleegksaENMLYVVEGmqfdrgyispyfvtdseKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAalkapgfgerksqylddiAILTGGTVIRDEVGLALDKVGKEVLGNASkvvltkdtttivgdgstqDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETldndeekvGADIVKRALcyplkliaknagvngSVVSEKVlssdnhkygynaatgnyedlmaagiidptkVVRCCLEHASSVAKTFLMSDCVVVeikepepampagnpmdnsgygy
mskevedseladvaavsagnnyeVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAAlkapgfgerksqYLDDIAILTGGTVIRDEVGLALDKVGkevlgnaskvvltkdtttivgdgstqdavSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGaqtetelkekklRVEDALNATKAaveegivvgggCTLLRLSSKVDAIKEtldndeekvgaDIVKRALCYPLKLiaknagvngsVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEpepampagnpmdnsgygy
MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAveegivvgggCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY
*****************AGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENA********LNERIAKLSGGVAVIQVGAQTETEL***KLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI********************
*****EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV**********************
**********ADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY
**KEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE******************
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MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRxxxxxxxxxxxxxxxxxxxxxERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTxxxxxxxxxxxxxxxxxxxxxVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query413 2.2.26 [Sep-21-2011]
P21240600 Chaperonin 60 subunit bet yes no 0.997 0.686 0.917 0.0
Q9LJE4596 Chaperonin 60 subunit bet no no 0.997 0.691 0.910 0.0
P08927595 RuBisCO large subunit-bin N/A no 0.995 0.690 0.915 0.0
C0Z361597 Chaperonin 60 subunit bet no no 1.0 0.691 0.900 0.0
Q43831499 RuBisCO large subunit-bin N/A no 0.997 0.825 0.878 0.0
P21241588 RuBisCO large subunit-bin N/A no 0.963 0.676 0.909 0.0
Q9C667611 Chaperonin 60 subunit bet no no 0.995 0.672 0.654 1e-162
Q42693435 RuBisCO large subunit-bin N/A no 0.978 0.928 0.674 1e-157
Q2JKV7539 60 kDa chaperonin 2 OS=Sy yes no 0.939 0.719 0.607 1e-129
Q119S1561 60 kDa chaperonin 1 OS=Tr yes no 0.963 0.709 0.591 1e-127
>sp|P21240|CPNB1_ARATH Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60B1 PE=1 SV=3 Back     alignment and function desciption
 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/413 (91%), Positives = 396/413 (95%), Gaps = 1/413 (0%)

Query: 1   MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQ 60
           MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTLEEGKSAEN LYVVEGMQ
Sbjct: 189 MSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQ 248

Query: 61  FDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDI 120
           FDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VLEDAIRG YPILIIAEDI
Sbjct: 249 FDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDI 308

Query: 121 EQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGK 180
           EQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GK
Sbjct: 309 EQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGK 368

Query: 181 EVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG 240
           EVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSG
Sbjct: 369 EVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLNERIAKLSG 428

Query: 241 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLD 300
           GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRL+SKVDAIK TLD
Sbjct: 429 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLD 488

Query: 301 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAA 360
           NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAA
Sbjct: 489 NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAA 548

Query: 361 GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 413
           GIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY
Sbjct: 549 GIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600
Binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer. Involved in protein assisted folding. Required for proper plastid division.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LJE4|CPNB2_ARATH Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1 Back     alignment and function description
>sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function description
>sp|C0Z361|CPNB3_ARATH Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana GN=CPN60B3 PE=1 SV=1 Back     alignment and function description
>sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1 Back     alignment and function description
>sp|P21241|RUBB_BRANA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1 Back     alignment and function description
>sp|Q42693|RUBB_CHLRE RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description
>sp|Q119S1|CH601_TRIEI 60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
255564820 605 rubisco subunit binding-protein beta sub 0.997 0.680 0.944 0.0
449493562 608 PREDICTED: LOW QUALITY PROTEIN: ruBisCO 0.997 0.677 0.932 0.0
449452644 608 PREDICTED: ruBisCO large subunit-binding 0.997 0.677 0.932 0.0
224073124 607 predicted protein [Populus trichocarpa] 0.997 0.678 0.937 0.0
225435794 608 PREDICTED: ruBisCO large subunit-binding 0.997 0.677 0.937 0.0
224052861 607 predicted protein [Populus trichocarpa] 0.997 0.678 0.922 0.0
356556926 591 PREDICTED: ruBisCO large subunit-binding 0.995 0.695 0.924 0.0
356525839 592 PREDICTED: ruBisCO large subunit-binding 0.995 0.694 0.927 0.0
297853250 600 CPN60B [Arabidopsis lyrata subsp. lyrata 0.997 0.686 0.917 0.0
15222729 600 RuBisCO large subunit-binding protein su 0.997 0.686 0.917 0.0
>gi|255564820|ref|XP_002523404.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] gi|223537354|gb|EEF38983.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/413 (94%), Positives = 406/413 (98%), Gaps = 1/413 (0%)

Query: 1   MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQ 60
           MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMS+VGRKGVVTLEEGKSAEN LYVVEGMQ
Sbjct: 194 MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSRVGRKGVVTLEEGKSAENSLYVVEGMQ 253

Query: 61  FDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDI 120
           FDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLIN+LEDAIRG YPIL+IAEDI
Sbjct: 254 FDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILEDAIRGGYPILVIAEDI 313

Query: 121 EQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGK 180
           EQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTV+R+EVGL+LDKVGK
Sbjct: 314 EQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVVREEVGLSLDKVGK 373

Query: 181 EVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG 240
           E+LGNASKVVLTKDTTTIVGDGSTQ+AV+KRVAQIR LIE AEQDYE+EKLNERIAKLSG
Sbjct: 374 EILGNASKVVLTKDTTTIVGDGSTQEAVTKRVAQIRNLIEAAEQDYEKEKLNERIAKLSG 433

Query: 241 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLD 300
           GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRL+SKVDAIK++LD
Sbjct: 434 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDSLD 493

Query: 301 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAA 360
           NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLSSDN ++GYNAATGNYEDLMAA
Sbjct: 494 NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPRFGYNAATGNYEDLMAA 553

Query: 361 GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 413
           GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE A+PAGNPMDNSGYGY
Sbjct: 554 GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-AVPAGNPMDNSGYGY 605

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449493562|ref|XP_004159350.1| PREDICTED: LOW QUALITY PROTEIN: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452644|ref|XP_004144069.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224073124|ref|XP_002303983.1| predicted protein [Populus trichocarpa] gi|222841415|gb|EEE78962.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435794|ref|XP_002285746.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera] gi|297746501|emb|CBI16557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224052861|ref|XP_002297617.1| predicted protein [Populus trichocarpa] gi|118486341|gb|ABK95011.1| unknown [Populus trichocarpa] gi|222844875|gb|EEE82422.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356556926|ref|XP_003546771.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356525839|ref|XP_003531529.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297853250|ref|XP_002894506.1| CPN60B [Arabidopsis lyrata subsp. lyrata] gi|297340348|gb|EFH70765.1| CPN60B [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15222729|ref|NP_175945.1| RuBisCO large subunit-binding protein subunit beta [Arabidopsis thaliana] gi|30695947|ref|NP_849811.1| RuBisCO large subunit-binding protein subunit beta [Arabidopsis thaliana] gi|27735252|sp|P21240.3|CPNB1_ARATH RecName: Full=Chaperonin 60 subunit beta 1, chloroplastic; Short=CPN-60 beta 1; AltName: Full=60 kDa chaperonin subunit beta 1; AltName: Full=RuBisCO large subunit-binding protein subunit beta, chloroplastic; Flags: Precursor gi|14423416|gb|AAK62390.1|AF386945_1 Rubisco subunit binding-protein beta subunit [Arabidopsis thaliana] gi|4204266|gb|AAD10647.1| Rubisco subunit binding-protein beta subunit [Arabidopsis thaliana] gi|20148345|gb|AAM10063.1| Rubisco subunit binding-protein beta subunit [Arabidopsis thaliana] gi|222423239|dbj|BAH19596.1| AT1G55490 [Arabidopsis thaliana] gi|332195130|gb|AEE33251.1| RuBisCO large subunit-binding protein subunit beta [Arabidopsis thaliana] gi|332195131|gb|AEE33252.1| RuBisCO large subunit-binding protein subunit beta [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
TAIR|locus:2193839600 CPN60B "chaperonin 60 beta" [A 0.997 0.686 0.893 8.8e-189
TAIR|locus:2092825596 Cpn60beta2 "chaperonin-60beta2 0.997 0.691 0.886 6.2e-188
TAIR|locus:2028751611 Cpn60beta4 "chaperonin-60beta4 0.978 0.661 0.649 1.5e-138
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.985 0.737 0.513 3e-108
UNIPROTKB|Q05972541 groL1 "60 kDa chaperonin 1" [S 0.985 0.752 0.525 2.3e-103
UNIPROTKB|Q9KNR7544 groL1 "60 kDa chaperonin 1" [V 0.941 0.715 0.524 4.6e-103
TIGR_CMR|VC_2664544 VC_2664 "chaperonin, 60 Kd sub 0.941 0.715 0.524 4.6e-103
TIGR_CMR|GSU_3340544 GSU_3340 "60 kDa chaperonin" [ 0.963 0.731 0.526 9.8e-103
TIGR_CMR|SPO_0887546 SPO_0887 "chaperonin, 60 kDa" 0.983 0.743 0.516 3.4e-100
TIGR_CMR|CJE_1356545 CJE_1356 "co-chaperonin GroEL" 0.983 0.744 0.518 9.1e-100
TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1830 (649.3 bits), Expect = 8.8e-189, P = 8.8e-189
 Identities = 369/413 (89%), Positives = 386/413 (93%)

Query:     1 MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQ 60
             MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTLEEGKSAEN LYVVEGMQ
Sbjct:   189 MSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQ 248

Query:    61 FDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDI 120
             FDRGYISPYFVTDSEKM+VE++NCKLLLVDKKITNARDL+ VLEDAIRG YPILIIAEDI
Sbjct:   249 FDRGYISPYFVTDSEKMSVEFDNCKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDI 308

Query:   121 EQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGK 180
             EQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GK
Sbjct:   309 EQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGK 368

Query:   181 EVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG 240
             EVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSG
Sbjct:   369 EVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLNERIAKLSG 428

Query:   241 GVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLD 300
             GVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK TLD
Sbjct:   429 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLD 488

Query:   301 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAA 360
             NDEEKVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAA
Sbjct:   489 NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMAA 548

Query:   361 GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 413
             GIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEP +P GNPMDNSGYGY
Sbjct:   549 GIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEP-VPVGNPMDNSGYGY 600
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006457 "protein folding" evidence=IEA;TAS
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0008219 "cell death" evidence=IMP
GO:0009627 "systemic acquired resistance" evidence=IMP
GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA;NAS
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009409 "response to cold" evidence=IEP
GO:0010319 "stromule" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=RCA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
TAIR|locus:2092825 Cpn60beta2 "chaperonin-60beta2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028751 Cpn60beta4 "chaperonin-60beta4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNR7 groL1 "60 kDa chaperonin 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2664 VC_2664 "chaperonin, 60 Kd subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.60760.93940.7198yesno
Q8YVS8CH602_NOSS1No assigned EC number0.58450.96850.7142yesno
A6QBP8CH60_SULNBNo assigned EC number0.54560.96120.7324yesno
A8ERY3CH60_ARCB4No assigned EC number0.54790.94430.7169yesno
B0CFQ6CH601_ACAM1No assigned EC number0.58290.95390.7060yesno
Q2JYW6CH604_RHIECNo assigned EC number0.52850.96610.7361yesno
A0L4C9CH60_MAGSMNo assigned EC number0.53730.96850.7259yesno
A7ZCV2CH60_CAMC1No assigned EC number0.56070.96120.7297yesno
B6J4T4CH60_COXB1No assigned EC number0.53710.96360.7210yesno
A7I0W5CH60_CAMHCNo assigned EC number0.56210.96120.7311yesno
Q9LJE4CPNB2_ARATHNo assigned EC number0.91040.99750.6912nono
Q119S1CH601_TRIEINo assigned EC number0.59140.96360.7094yesno
Q42693RUBB_CHLRENo assigned EC number0.67480.97820.9287N/Ano
A8ZU48CH60_DESOHNo assigned EC number0.55030.96360.7236yesno
B2V8F1CH60_SULSYNo assigned EC number0.54960.94670.7187yesno
Q1M3H2CH603_RHIL3No assigned EC number0.53460.96360.7343yesno
Q7MBB4CH602_GLOVINo assigned EC number0.56650.97330.7269yesno
Q3SQS3CH601_NITWNNo assigned EC number0.52850.96610.7361yesno
A7GZ43CH60_CAMC5No assigned EC number0.55440.96120.7297yesno
B6J2I0CH60_COXB2No assigned EC number0.53710.96360.7210yesno
P19421CH60_COXBUNo assigned EC number0.53710.96360.7210yesno
O67943CH60_AQUAENo assigned EC number0.54130.95150.7211yesno
Q3M6L5CH602_ANAVTNo assigned EC number0.58950.96850.7142yesno
Q5N3T6CH602_SYNP6No assigned EC number0.57930.95880.7135yesno
Q2JXD4CH601_SYNJANo assigned EC number0.59890.94430.7195yesno
P0A337CH602_THEEBNo assigned EC number0.58450.96850.7366yesno
Q2RY28CH601_RHORTNo assigned EC number0.52830.97570.7421yesno
A9NA82CH60_COXBRNo assigned EC number0.53710.96360.7210yesno
P21241RUBB_BRANANo assigned EC number0.90950.96360.6768N/Ano
P21240CPNB1_ARATHNo assigned EC number0.91760.99750.6866yesno
B9L698CH60_NAUPANo assigned EC number0.55550.96120.7284yesno
A9KC15CH60_COXBNNo assigned EC number0.53710.96360.7210yesno
Q43831RUBB_SECCENo assigned EC number0.87890.99750.8256N/Ano
P08927RUBB_PEANo assigned EC number0.91500.99510.6907N/Ano
P35470CH602_RHIMENo assigned EC number0.51730.96850.7380yesno
C0Z361CPNB3_ARATHNo assigned EC number0.90071.00.6917nono
Q7MAE3CH60_WOLSUNo assigned EC number0.55470.96120.7271yesno
A0RNU3CH60_CAMFFNo assigned EC number0.56520.93700.7100yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_III2625
hypothetical protein (607 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2088.1
hypothetical protein (955 aa)
      • 0.563
estExt_Genewise1_v1.C_LG_III0383
hypothetical protein (681 aa)
  •   • 0.526
estExt_fgenesh4_pm.C_LG_I0780
hypothetical protein (97 aa)
•     • 0.524
estExt_Genewise1_v1.C_LG_VIII0130
hypothetical protein (97 aa)
•     • 0.519
estExt_fgenesh4_pg.C_LG_X1007
hypothetical protein (97 aa)
•     • 0.495
estExt_Genewise1_v1.C_LG_XVIII0619
hypothetical protein (258 aa)
• ••  • 0.490
estExt_fgenesh4_pm.C_LG_IX0449
SubName- Full=Putative uncharacterized protein; (97 aa)
•     • 0.480
estExt_Genewise1_v1.C_280199
SubName- Full=Putative uncharacterized protein; (256 aa)
• ••  • 0.480
rps3
RecName- Full=30S ribosomal protein S3, chloroplastic; (74 aa)
  •     0.433
grail3.3134000101
Predicted protein (100 aa)
      • 0.429

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-166
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-164
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-161
CHL00093529 CHL00093, groEL, chaperonin GroEL 1e-159
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-153
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-126
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-109
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 4e-73
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 3e-68
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 3e-31
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 3e-05
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-04
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 4e-04
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 0.003
PRK11820288 PRK11820, PRK11820, hypothetical protein; Provisio 0.004
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 0.004
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
 Score =  776 bits (2004), Expect = 0.0
 Identities = 382/413 (92%), Positives = 401/413 (97%), Gaps = 1/413 (0%)

Query: 1   MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQ 60
           MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAEN LYVVEGMQ
Sbjct: 189 MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQ 248

Query: 61  FDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDI 120
           FDRGYISPYFVTDSEKM+VEY+NCKLLLVDKKITNARDLI +LEDAIRG YP+LIIAEDI
Sbjct: 249 FDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDI 308

Query: 121 EQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGK 180
           EQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGGTVIR+EVGL+LDKVGK
Sbjct: 309 EQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGK 368

Query: 181 EVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG 240
           EVLG A+KVVLTKDTTTIVGDGSTQ+AV+KRVAQI+ LIE AEQDYE+EKLNERIAKLSG
Sbjct: 369 EVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSG 428

Query: 241 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLD 300
           GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRL+SKVDAIK+TL+
Sbjct: 429 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLE 488

Query: 301 NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAA 360
           NDE+KVGADIVKRAL YPLKLIAKNAGVNGSVVSEKVLS+DN K+GYNAATG YEDLMAA
Sbjct: 489 NDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAA 548

Query: 361 GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 413
           GIIDPTKVVRCCLEHA+SVAKTFL SDCVVVEIKEPEP  PAGNPMDNSGYGY
Sbjct: 549 GIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPV-PAGNPMDNSGYGY 600

Length = 600
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|236993 PRK11820, PRK11820, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 413
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.97
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.96
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.29
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 97.91
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.9e-84  Score=680.15  Aligned_cols=412  Identities=93%  Similarity=1.304  Sum_probs=395.1

Q ss_pred             CccccCChhHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCeee
Q 015120            1 MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAVE   80 (413)
Q Consensus         1 ~a~pv~~~~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~~   80 (413)
                      +|+|++|.+|.+||+||+++++.|++|+++|+..+|.+|.|.++.|++++|++++++|++|+++|.||||+++.++|+++
T Consensus       189 ~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~  268 (600)
T PLN03167        189 MSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVE  268 (600)
T ss_pred             hcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEE
Confidence            46788755899999999999999999999999999988989888999999998899999999999999999999999999


Q ss_pred             ecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHHH
Q 015120           81 YENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAI  160 (413)
Q Consensus        81 ~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la~  160 (413)
                      ++||+||++|++|++++++.++++++.+.++||||++++|++++|++|+.|+++|.++++|||+|+||+.++++|+|||+
T Consensus       269 l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~  348 (600)
T PLN03167        269 YDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAI  348 (600)
T ss_pred             EeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhcC
Q 015120          161 LTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSG  240 (413)
Q Consensus       161 ~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~g  240 (413)
                      +|||++++++.+++++++++++||+|++|++.++.++++++.++++.+++|+.+++.+++++.++|++++|++||++|+|
T Consensus       349 ~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g  428 (600)
T PLN03167        349 LTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSG  428 (600)
T ss_pred             hhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCC
Confidence            99999999988889999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             CeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHHH
Q 015120          241 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLK  320 (413)
Q Consensus       241 ~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip~  320 (413)
                      ++++|+|||+|+.+++|+||+++|||+++|+|+++|+|||||++|++++.+|.+++.++.+++|+.++++|++||+.||+
T Consensus       429 ~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r  508 (600)
T PLN03167        429 GVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLK  508 (600)
T ss_pred             cEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchh
Confidence            99999999999999999999999999999999999999999999999999999988778899998889999999999999


Q ss_pred             HHHHhcCCCchhhHHhhhccCCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCCCC
Q 015120          321 LIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAM  400 (413)
Q Consensus       321 ~L~~NaG~d~~~i~~kl~~~~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~~~  400 (413)
                      +||+|||+|+.+++.+|++.+++++|||+.+|+++||++.|||||+.||+++|+.|+++|++||+||++|+.+|.+++ +
T Consensus       509 ~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~-~  587 (600)
T PLN03167        509 LIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEP-V  587 (600)
T ss_pred             hhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-C
Confidence            999999999999999998655778999999999999999999999999999999999999999999999999876655 3


Q ss_pred             CCCCCCCCCCCCC
Q 015120          401 PAGNPMDNSGYGY  413 (413)
Q Consensus       401 ~~~~~~~~~~~~~  413 (413)
                      ++.++++.++|||
T Consensus       588 ~~~~~~~~~~~~~  600 (600)
T PLN03167        588 PAGNPMDNSGYGY  600 (600)
T ss_pred             CCCCCCCCCCCCC
Confidence            5788899999998

>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-106
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-103
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-103
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-103
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-103
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-103
1ss8_A524 Groel Length = 524 1e-103
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-103
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-103
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-103
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-103
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-102
1oel_A547 Conformational Variability In The Refined Structure 1e-102
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-102
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-102
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-102
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-100
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-100
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 2e-59
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 1e-57
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 3e-57
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 3e-57
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 1e-56
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 1e-44
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 5e-44
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 2e-43
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 8e-42
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/400 (50%), Positives = 280/400 (70%), Gaps = 4/400 (1%)
Query: 5   VEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDR 63
           VED + + +VA +SA N+ EVG +IA+AM KVG++G++T+EE KS E  L  VEG QFD+
Sbjct: 137 VEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDK 195
Query: 64  GYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQE 123
           GYISPYFVT+ E M    E+  +L+V+KK++N R+L+ +LE   +   P+LIIAED+E E
Sbjct: 196 GYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGE 255
Query: 124 ALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVL 183
           ALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTVI +E+G  L+     +L
Sbjct: 256 ALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSML 315
Query: 184 GNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVA 243
           G A +V +TKD TTIVG    ++ +  R+  I+  +E  + +Y REKL ER+AKL+GGVA
Sbjct: 316 GRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVA 375
Query: 244 VIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 303
           VI+VGA TETELKEKK R EDALNAT+AA           TLLR  S V+ + + L+ D 
Sbjct: 376 VIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGD- 434
Query: 304 EKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS-SDNHKYGYNAATGNYEDLMAAGI 362
           E  GA IV+RAL  P + IA+NAG  GSV+ +++L+ + N +YG+NAATG + D++ AGI
Sbjct: 435 EATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGI 494
Query: 363 IDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 402
           +DP KV R  L++A+S+    L ++ VV E  E + + PA
Sbjct: 495 VDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPA 534
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 3e-98
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 5e-97
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 6e-71
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 5e-08
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 2e-06
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 3e-06
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 4e-06
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 5e-06
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 5e-06
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 7e-06
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 8e-06
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 8e-06
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 8e-06
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 3e-05
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 7e-05
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-04
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 2e-04
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 2e-04
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 3e-04
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 3e-04
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 4e-04
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 5e-04
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 5e-04
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
 Score =  575 bits (1484), Expect = 0.0
 Identities = 211/413 (51%), Positives = 290/413 (70%), Gaps = 4/413 (0%)

Query: 1   MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGM 59
           ++  VED   + +VA +SA N+ EVG +IA+AM KVG++G++T+EE KS E  L  VEG 
Sbjct: 133 LAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGY 191

Query: 60  QFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAED 119
           QFD+GYISPYFVT+ E M    E+  +L+V+KK++N R+L+ +LE   +   P+LIIAED
Sbjct: 192 QFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAED 251

Query: 120 IEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVG 179
           +E EALATLVVNKLRG L +AA+KAPGFG+R+ + L DIA +TGGTVI +E+G  L+   
Sbjct: 252 VEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENAT 311

Query: 180 KEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS 239
             +LG A +V +TKD TTIVG    ++ +  R+  I+  +E  + +Y REKL ER+AKL+
Sbjct: 312 LSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLA 371

Query: 240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETL 299
           GGVAVI+VGA TETELKEKK R EDALNAT+AAVEEGIV GGG TLLR  S V+ + + L
Sbjct: 372 GGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKL 431

Query: 300 DNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD-NHKYGYNAATGNYEDLM 358
              +E  GA IV+RAL  P + IA+NAG  GSV+ +++L+   N +YG+NAATG + D++
Sbjct: 432 -EGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMV 490

Query: 359 AAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 411
            AGI+DP KV R  L++A+S+    L ++ VV E  E + + PA     +  +
Sbjct: 491 EAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPASAGAGDMDF 543
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.92
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.86
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
Probab=100.00  E-value=5.4e-89  Score=714.41  Aligned_cols=409  Identities=52%  Similarity=0.819  Sum_probs=382.8

Q ss_pred             CccccCCh-hHHHHHHHhcCCchhHHHHHHHHHHHhccCCceeeecCCccccceeeeeceEEecccccCccccCcccCee
Q 015120            1 MSKEVEDS-ELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGMQFDRGYISPYFVTDSEKMAV   79 (413)
Q Consensus         1 ~a~pv~~~-~L~~VA~ts~~~~~~la~lv~~Ai~~vg~~~~I~~~~g~s~~ds~~~i~G~~~~~~~~~~~~~~~~~~~~~   79 (413)
                      +|+|++++ +|.+||+||++ +++|++++++|+.+++.+|+|+++.|++++|++++++|++|+++|+||||++++++|++
T Consensus       133 ~s~~v~~~~~l~~vA~iS~~-~~~i~~li~dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~  211 (543)
T 1we3_A          133 LAIPVEDRKAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEA  211 (543)
T ss_dssp             TCBCCCSHHHHHHHHHHHHT-CHHHHHHHHHHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBC
T ss_pred             hcccCCCHHHHHHhhhhhcC-CHHHHHHHHHHHHHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCce
Confidence            57899888 99999999998 99999999999999999999999999999999889999999999999999999999999


Q ss_pred             eecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhhcccceeeEeeCCCCCccchhhHHHHH
Q 015120           80 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIA  159 (413)
Q Consensus        80 ~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~~~~~~i~av~~~~~g~~~~~~le~la  159 (413)
                      +++||+||++|++|+++++++++++++.+.|+||||++++|+++++++|+.|+++|.++|+|||+|+||+.++.+|+|||
T Consensus       212 ~~en~~Ill~d~~Is~~~~l~~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia  291 (543)
T 1we3_A          212 VLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIA  291 (543)
T ss_dssp             CEEEEEEEEESSCBCCHHHHHHHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHH
T ss_pred             eecCceEEEECCCcCCHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhc
Q 015120          160 ILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLS  239 (413)
Q Consensus       160 ~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~Rl~~l~  239 (413)
                      ++|||+++++++|++++++++++||+|+.|++++++++||++|++++.+..|+++|+.+++.++++|+|++|+||+++|+
T Consensus       292 ~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e~l~erlakl~  371 (543)
T 1we3_A          292 AVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLA  371 (543)
T ss_dssp             HHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHT
T ss_pred             HHhCCceeeccccCCcccCCHHHCCCceEEEEEcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHhcc
Confidence            99999999998999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecCCChhhHHHHHHHHHHHHHHHHHhhhcCccccCchHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhHHH
Q 015120          240 GGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPL  319 (413)
Q Consensus       240 g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~al~~gvVpGGGa~e~~ls~~L~~~~~~~~~~eq~~~i~~~a~AL~~ip  319 (413)
                      |++|||+|||+|+.+++|+||+++||||++|+++++|+|||||++|++++.+|++++.+.++.+| +++++|++||+.||
T Consensus       372 ~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~giVpGGGa~e~~~s~~L~~~~~~~~g~~q-~~i~~~a~ALe~ip  450 (543)
T 1we3_A          372 GGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEA-TGAKIVRRALEEPA  450 (543)
T ss_dssp             TCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHCEEETTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHTTHHH
T ss_pred             CCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCccHHHHHHHHHHHHHhhccCchHH-HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999877778777 69999999999999


Q ss_pred             HHHHHhcCCCchhhHHhhhcc-CCCceeeecCCCcccccccCCccccchhHHHHHHHHHHHHHHHhchhHHhhccCCCCC
Q 015120          320 KLIAKNAGVNGSVVSEKVLSS-DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP  398 (413)
Q Consensus       320 ~~L~~NaG~d~~~i~~kl~~~-~~~~~G~d~~~g~i~dm~~~gI~Dp~~vk~~~l~~A~e~a~~iL~id~iI~~~~~~~~  398 (413)
                      ++||+|||+|+.+++.+|++. ++.++|||+.+|+++||++.|||||+.||+++|++|+|+|++|||||++|...|++.|
T Consensus       451 ~~La~NaG~d~~~vv~~l~~~h~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~  530 (543)
T 1we3_A          451 RQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKE  530 (543)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSCC--
T ss_pred             HHHHHHCCCCHHHHHHHHHHhcCCCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCC
Confidence            999999999999999999973 3678999999999999999999999999999999999999999999999999887766


Q ss_pred             CCCCCCCCCCCCC
Q 015120          399 AMPAGNPMDNSGY  411 (413)
Q Consensus       399 ~~~~~~~~~~~~~  411 (413)
                      +||+..++..|+|
T Consensus       531 ~~~~~~~~~~~~~  543 (543)
T 1we3_A          531 STPASAGAGDMDF  543 (543)
T ss_dssp             -------------
T ss_pred             CCCCCCCCCCCCC
Confidence            6555444555554
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 413
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 4e-83
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 7e-83
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 1e-79
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 7e-66
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 1e-32
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 8e-07
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 5e-28
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 6e-14
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-25
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-11
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 9e-22
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 1e-21
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 1e-04
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 5e-19
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 4e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 8e-06
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 3e-16
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-08
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-15
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 1e-14
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 2e-12
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-12
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 3e-12
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  250 bits (640), Expect = 4e-83
 Identities = 109/190 (57%), Positives = 138/190 (72%)

Query: 53  LYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYP 112
               EGMQFDRGY+SPYF+   E  AVE E+  +LL DKKI+N R+++ VLE   +   P
Sbjct: 4   PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKP 63

Query: 113 ILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVG 172
           +LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G
Sbjct: 64  LLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIG 123

Query: 173 LALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLN 232
           + L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL 
Sbjct: 124 MELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQ 183

Query: 233 ERIAKLSGGV 242
           ER+AKL+GGV
Sbjct: 184 ERVAKLAGGV 193
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.95
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.92
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.91
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.88
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.87
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.85
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.84
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.84
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.84
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.82
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.76
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.57
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.38
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.36
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.34
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.52
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.5
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.44
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 97.52
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.95
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 93.04
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-43  Score=318.30  Aligned_cols=189  Identities=58%  Similarity=0.882  Sum_probs=185.7

Q ss_pred             eeeeceEEecccccCccccCcccCeeeecCeeEEEecccCCCHHHHHHHHHHHHhcCCCEEEEeccCchHHHHHHHHHhh
Q 015120           54 YVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKL  133 (413)
Q Consensus        54 ~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Ili~d~~i~~~~~~~~~le~i~~~~~~lvI~~~~i~~~al~~L~~n~~  133 (413)
                      ++.+|+.|++||.||||+++.+++..+++||+||++|.+|+++++++|+||.+.+.++||||++++|+++||++|+.|+.
T Consensus         5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~   84 (193)
T d1kida_           5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM   84 (193)
T ss_dssp             SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred             cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeEeeCCCCCccchhhHHHHHHHhCCeEeecCcCccccCCCCcccccceEEEEcCCeEEEEcCCCChhhHHHHHH
Q 015120          134 RGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVA  213 (413)
Q Consensus       134 ~~~~~i~av~~~~~g~~~~~~le~la~~tG~~~~~~~~~~~l~~~~~~~lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~  213 (413)
                      +|.++||||++||||+.+++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|+++++.++++.+++|++
T Consensus        85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~  164 (193)
T d1kida_          85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA  164 (193)
T ss_dssp             TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred             ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHhcCCe
Q 015120          214 QIRTLIENAEQDYEREKLNERIAKLSGGV  242 (413)
Q Consensus       214 ~l~~~l~~~~~~~~~~~l~~Rl~~l~g~~  242 (413)
                      +|+.+++++++++++++|++||++|+|++
T Consensus       165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         165 QIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999974
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure