Citrus Sinensis ID: 015127
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 413 | ||||||
| 307136231 | 524 | protein phosphatase 2a [Cucumis melo sub | 0.995 | 0.784 | 0.822 | 0.0 | |
| 449524868 | 524 | PREDICTED: serine/threonine protein phos | 0.995 | 0.784 | 0.819 | 0.0 | |
| 449441388 | 524 | PREDICTED: LOW QUALITY PROTEIN: serine/t | 0.995 | 0.784 | 0.819 | 0.0 | |
| 359488631 | 452 | PREDICTED: serine/threonine protein phos | 0.987 | 0.902 | 0.858 | 0.0 | |
| 356571427 | 536 | PREDICTED: serine/threonine protein phos | 0.992 | 0.764 | 0.793 | 0.0 | |
| 356511544 | 534 | PREDICTED: serine/threonine protein phos | 0.987 | 0.764 | 0.798 | 0.0 | |
| 356574028 | 523 | PREDICTED: serine/threonine protein phos | 0.995 | 0.785 | 0.808 | 0.0 | |
| 255547836 | 524 | protein phosphatase 2a, regulatory subun | 0.992 | 0.782 | 0.808 | 0.0 | |
| 224107677 | 526 | predicted protein [Populus trichocarpa] | 0.995 | 0.781 | 0.782 | 0.0 | |
| 224141269 | 530 | predicted protein [Populus trichocarpa] | 0.995 | 0.775 | 0.827 | 0.0 |
| >gi|307136231|gb|ADN34067.1| protein phosphatase 2a [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/411 (82%), Positives = 372/411 (90%)
Query: 1 MIKQILNKFPRKPSKSSDYREGGGTSTSSSHASANSRNSDLAGNRYANPSNVSNSAINSV 60
MIKQILN+ PRKPSKS+++REG GT+ SSS+AS + R++DLA N +AN S S NS
Sbjct: 1 MIKQILNRLPRKPSKSTEHREGAGTTISSSNASTSLRSNDLAANHHANTGTGSFSGPNST 60
Query: 61 ANVGVNHGNKFPQAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTD 120
+VG+NHG+K Q +NSK NGN YEALP FKDVPN+EKQ+LF++KLN+CCVVFDFTD
Sbjct: 61 LSVGLNHGSKPSQGLNSKSNGNSQVSYEALPGFKDVPNSEKQSLFIKKLNMCCVVFDFTD 120
Query: 121 PTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLE 180
P+KNLKEKDIKRQTL+ELVDYV+SANGK E V+QE+VKMVS+NLFRT T P R+NK LE
Sbjct: 121 PSKNLKEKDIKRQTLIELVDYVASANGKLSENVIQEIVKMVSSNLFRTPTIPSRDNKALE 180
Query: 181 AFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDP 240
AFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDP
Sbjct: 181 AFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDP 240
Query: 241 REREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFA 300
RER+YLKTVLHRIYGKFMVHRPFIRK+INNIFYRF+FETEKHNGIAELLEILGSIINGFA
Sbjct: 241 RERDYLKTVLHRIYGKFMVHRPFIRKSINNIFYRFVFETEKHNGIAELLEILGSIINGFA 300
Query: 301 LPLKEEHKLFLVRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVT 360
LPLKEEHKLFLVRALIPLHKPKC+ MYHQQLSYCITQFVEKDCKLADT+IRGLLKYWP+T
Sbjct: 301 LPLKEEHKLFLVRALIPLHKPKCIPMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPIT 360
Query: 361 NSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVGSSLL 411
NS+KEVMFLGELEEVLE+TQP EFQRCMVPLF QIGRCLSSSHFQV L
Sbjct: 361 NSSKEVMFLGELEEVLEATQPAEFQRCMVPLFRQIGRCLSSSHFQVAERTL 411
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449524868|ref|XP_004169443.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449441388|ref|XP_004138464.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359488631|ref|XP_002270911.2| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356571427|ref|XP_003553878.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356511544|ref|XP_003524485.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356574028|ref|XP_003555155.1| PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255547836|ref|XP_002514975.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223546026|gb|EEF47529.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224107677|ref|XP_002314559.1| predicted protein [Populus trichocarpa] gi|222863599|gb|EEF00730.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224141269|ref|XP_002323997.1| predicted protein [Populus trichocarpa] gi|222866999|gb|EEF04130.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 413 | ||||||
| TAIR|locus:2009912 | 492 | AT1G13460 [Arabidopsis thalian | 0.813 | 0.682 | 0.821 | 1e-152 | |
| TAIR|locus:505006470 | 522 | ATB' GAMMA [Arabidopsis thalia | 0.973 | 0.770 | 0.667 | 2.2e-144 | |
| TAIR|locus:2089905 | 546 | AT3G21650 [Arabidopsis thalian | 0.995 | 0.752 | 0.665 | 2.8e-144 | |
| TAIR|locus:2092175 | 529 | AT3G26020 [Arabidopsis thalian | 0.745 | 0.582 | 0.666 | 6.6e-136 | |
| TAIR|locus:2085099 | 499 | ATB' BETA [Arabidopsis thalian | 0.830 | 0.687 | 0.708 | 5.2e-134 | |
| TAIR|locus:2092080 | 477 | ATB' DELTA "serine/threonine p | 0.779 | 0.675 | 0.726 | 4.8e-131 | |
| TAIR|locus:2142619 | 495 | ATB' ALPHA [Arabidopsis thalia | 0.832 | 0.694 | 0.695 | 3.5e-130 | |
| TAIR|locus:2179499 | 500 | AT5G25510 [Arabidopsis thalian | 0.786 | 0.65 | 0.634 | 5.3e-117 | |
| TAIR|locus:2082677 | 497 | AT3G54930 [Arabidopsis thalian | 0.784 | 0.651 | 0.619 | 1e-109 | |
| FB|FBgn0042693 | 984 | PP2A-B' "PP2A-B'" [Drosophila | 0.777 | 0.326 | 0.594 | 2.5e-106 |
| TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1467 (521.5 bits), Expect = 1.0e-152, Sum P(2) = 1.0e-152
Identities = 276/336 (82%), Positives = 301/336 (89%)
Query: 76 NSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTL 135
N K NGN YEALP FKDVPNAEKQNLFVRKL+LCCVVFDF+DPTKN+KEKDIKRQTL
Sbjct: 59 NLKGNGNGFTPYEALPGFKDVPNAEKQNLFVRKLSLCCVVFDFSDPTKNVKEKDIKRQTL 118
Query: 136 VELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAW 195
+ELVDYV+S NGKF E V+QE+V+MVS N+FRTL PRENKV++A DLEEEEPSMDP W
Sbjct: 119 LELVDYVASPNGKFSETVIQEVVRMVSVNIFRTLNPQPRENKVIDALDLEEEEPSMDPTW 178
Query: 196 PHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYG 255
PHLQ+VYE LLR +ASPETD KLAK+YID SFV RLLDLFDSEDPRER+ LKTVLHRIYG
Sbjct: 179 PHLQLVYEILLRLIASPETDTKLAKKYIDQSFVSRLLDLFDSEDPRERDCLKTVLHRIYG 238
Query: 256 KFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRAL 315
KFMVHRPFIRK+INNIFYRF+FETEKHNGIAE LEILGSIINGFALPLK+EHK+FLVRAL
Sbjct: 239 KFMVHRPFIRKSINNIFYRFVFETEKHNGIAEFLEILGSIINGFALPLKDEHKVFLVRAL 298
Query: 316 IPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEV 375
+PLHKPK + MYHQQLSYCITQFVEKDCKLADTVIRGLLK WPVTNS+KEVMFL ELEEV
Sbjct: 299 VPLHKPKSLQMYHQQLSYCITQFVEKDCKLADTVIRGLLKSWPVTNSSKEVMFLNELEEV 358
Query: 376 LESTQPGEFQRCMVPLFHQIGRCLSSSHFQVGSSLL 411
LE+TQP EFQRCMVPLF Q+ RCL+S HFQV L
Sbjct: 359 LEATQPPEFQRCMVPLFRQVARCLNSLHFQVAERAL 394
|
|
| TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092175 AT3G26020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00020577001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (525 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 413 | |||
| pfam01603 | 405 | pfam01603, B56, Protein phosphatase 2A regulatory | 1e-171 | |
| PLN00122 | 170 | PLN00122, PLN00122, serine/threonine protein phosp | 1e-11 |
| >gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) | Back alignment and domain information |
|---|
Score = 485 bits (1251), Expect = e-171
Identities = 197/316 (62%), Positives = 246/316 (77%), Gaps = 9/316 (2%)
Query: 93 FKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSAN--GKFP 150
DVP+ E ++LF++KL CCV+ DF+DP +LK K+IKRQTL E+VDYVS+++ GK
Sbjct: 1 LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60
Query: 151 EVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVA 210
E + E+ KM++ N+FR L P + D +++EP ++P+WPHL +VYE LLRF+
Sbjct: 61 EDLYDEIFKMIAVNIFRPLPPIPNP-----SLDPDDDEPFLEPSWPHLSLVYEILLRFIE 115
Query: 211 SPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINN 270
SP D K+YIDHSF+ RLLDLFDS DPRER+ LKT LHRIYGKF RPFIRKAIN+
Sbjct: 116 SPPFDPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINS 173
Query: 271 IFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQ 330
I YRFI+ETEK NG+AELLEILGSIINGFALPLKEEHK FL++ L+PLHK K +++YHQQ
Sbjct: 174 ILYRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQ 233
Query: 331 LSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVP 390
LSYC+ QF+EKD LA+ VIRGLLK+WPVTNS+KEV+FL ELEE+LE P EFQ+ MVP
Sbjct: 234 LSYCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVP 293
Query: 391 LFHQIGRCLSSSHFQV 406
LF + RC+SS HFQV
Sbjct: 294 LFKILARCISSPHFQV 309
|
Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405 |
| >gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 413 | |||
| KOG2085 | 457 | consensus Serine/threonine protein phosphatase 2A, | 100.0 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 100.0 | |
| PLN00122 | 170 | serine/threonine protein phosphatase 2A; Provision | 97.62 | |
| PLN00122 | 170 | serine/threonine protein phosphatase 2A; Provision | 97.18 |
| >KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-136 Score=1027.66 Aligned_cols=325 Identities=70% Similarity=1.167 Sum_probs=320.2
Q ss_pred CcccccCCCCCCCChHHhHHHHHHHHhccCccccccCCCCCchhHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 015127 84 LAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDFTDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSA 163 (413)
Q Consensus 84 ~~~l~~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDFsDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~ 163 (413)
..++++||+|+|||++++++||++|+++||++|||+||.+|.++|++||+||+||+||+.+.++++||.+|+++++|+++
T Consensus 39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~ 118 (457)
T KOG2085|consen 39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV 118 (457)
T ss_pred CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCccCHHHHhccCCHHHHHHHhhccCCCChhHH
Q 015127 164 NLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPRER 243 (413)
Q Consensus 164 NiFR~lPp~~~~~~~~~~~d~eedep~~EpsWPHLqlVYelllrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRER 243 (413)
||||+|||..+++ .+|+|||||++|++|||||+|||+|+||++||++|+++||+|||++||++||+||||||||||
T Consensus 119 nifR~lpp~~n~~----~~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER 194 (457)
T KOG2085|consen 119 NIFRTLPPSVNPT----GFDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER 194 (457)
T ss_pred HhhccCCcccCCC----cCCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence 9999999998755 389999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhccCCCCc
Q 015127 244 EYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKC 323 (413)
Q Consensus 244 d~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeEHk~fl~rvLiPLHk~~~ 323 (413)
|+|||+|||||||||+||+|||++||||||+||||||+|||||||||||||||||||+|||||||+||.||||||||+++
T Consensus 195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~ 274 (457)
T KOG2085|consen 195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS 274 (457)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCc
Q 015127 324 VAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSH 403 (413)
Q Consensus 324 ~~~Yh~qL~yCi~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~h 403 (413)
++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||+|||||||+++|.+|++||+|||+|||+|++|+|
T Consensus 275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H 354 (457)
T KOG2085|consen 275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH 354 (457)
T ss_pred ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhc
Q 015127 404 FQVGSSLLS 412 (413)
Q Consensus 404 fqVAErAL~ 412 (413)
||||||||.
T Consensus 355 FQVAEraL~ 363 (457)
T KOG2085|consen 355 FQVAERALY 363 (457)
T ss_pred HHHHHHHHH
Confidence 999999985
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
| >PLN00122 serine/threonine protein phosphatase 2A; Provisional | Back alignment and domain information |
|---|
| >PLN00122 serine/threonine protein phosphatase 2A; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 413 | ||||
| 2jak_A | 392 | Human Pp2a Regulatory Subunit B56g Length = 392 | 1e-111 | ||
| 2npp_B | 449 | Structure Of The Protein Phosphatase 2a Holoenzyme | 1e-111 | ||
| 2iae_B | 407 | Crystal Structure Of A Protein Phosphatase 2a (Pp2a | 1e-111 | ||
| 3fga_B | 403 | Structural Basis Of Pp2a And Sgo Interaction Length | 1e-109 | ||
| 2nyl_B | 388 | Crystal Structure Of Protein Phosphatase 2a (Pp2a) | 1e-105 |
| >pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 | Back alignment and structure |
|
| >pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 | Back alignment and structure |
| >pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 | Back alignment and structure |
| >pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 | Back alignment and structure |
| >pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 413 | |||
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 1e-157 | |
| 2jak_A | 392 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 1e-157 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 1e-152 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 |
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 | Back alignment and structure |
|---|
Score = 451 bits (1161), Expect = e-157
Identities = 191/335 (57%), Positives = 247/335 (73%), Gaps = 3/335 (0%)
Query: 73 QAVNSKLNGNPLAYYEALPSFKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIK 131
+ V N N L +DVP A+++ LF++KL CCV+FDF +DP +LK K++K
Sbjct: 10 RMVVDAANSNGPFQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVK 69
Query: 132 RQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSM 191
R L E+V+Y++ E + E+V M + N+FRTL PP N FD EE+EP++
Sbjct: 70 RAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTL 127
Query: 192 DPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLH 251
+ AWPHLQ+VYEF LRF+ SP+ +AK+YID FVL+LL+LFDSEDPRER++LKT LH
Sbjct: 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH 187
Query: 252 RIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFL 311
RIYGKF+ R +IRK INNIFYRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL
Sbjct: 188 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFL 247
Query: 312 VRALIPLHKPKCVAMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGE 371
++ L+PLHK K +++YH QL+YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL E
Sbjct: 248 LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNE 307
Query: 372 LEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQV 406
LEE+L+ +P EF + M PLF Q+ +C+SS HFQV
Sbjct: 308 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQV 342
|
| >2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 | Back alignment and structure |
|---|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 413 | |||
| 2jak_A | 392 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 100.0 | |
| 3fga_B | 403 | Serine/threonine-protein phosphatase 2A 56 kDa RE | 100.0 | |
| 2npp_B | 449 | PP2A, B subunit, serine/threonine-protein phosphat | 100.0 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 90.7 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 89.7 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 86.15 |
| >2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-123 Score=944.76 Aligned_cols=324 Identities=57% Similarity=1.035 Sum_probs=300.8
Q ss_pred cccCCCCCCCChHHhHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhc
Q 015127 87 YEALPSFKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANL 165 (413)
Q Consensus 87 l~~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~Ni 165 (413)
+++||+|+|++++++++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++++++++||++||
T Consensus 36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 115 (392)
T 2jak_A 36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 115 (392)
T ss_dssp ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCccCHHHHhccCCHHHHHHHhhccCCCChhHHHH
Q 015127 166 FRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREY 245 (413)
Q Consensus 166 FR~lPp~~~~~~~~~~~d~eedep~~EpsWPHLqlVYelllrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~ 245 (413)
||++||..++++ .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+
T Consensus 116 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 193 (392)
T 2jak_A 116 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 193 (392)
T ss_dssp CSCCCC-----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCCCCCccc--ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876543 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhccCCCCccc
Q 015127 246 LKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVA 325 (413)
Q Consensus 246 LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeEHk~fl~rvLiPLHk~~~~~ 325 (413)
|||+||||||||+++|+|||++|||+|++||||+++|||||||||||||||||||+|||+||++||.||||||||+++++
T Consensus 194 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~ 273 (392)
T 2jak_A 194 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 273 (392)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCchH
Q 015127 326 MYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQ 405 (413)
Q Consensus 326 ~Yh~qL~yCi~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hfq 405 (413)
.||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.+++++|+++++|||+|||+|++|+|||
T Consensus 274 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfq 353 (392)
T 2jak_A 274 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 353 (392)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhc
Q 015127 406 VGSSLLS 412 (413)
Q Consensus 406 VAErAL~ 412 (413)
||||||.
T Consensus 354 VAErAL~ 360 (392)
T 2jak_A 354 VAERALY 360 (392)
T ss_dssp HHHHHHG
T ss_pred HHHHHHH
Confidence 9999986
|
| >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* | Back alignment and structure |
|---|
| >2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 | Back alignment and structure |
|---|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 413 | ||||
| d2jaka1 | 343 | a.118.1.20 (A:30-372) Serine/threonine-protein pho | 1e-167 |
| >d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: B56-like domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma species: Human (Homo sapiens) [TaxId: 9606]
Score = 470 bits (1212), Expect = e-167
Identities = 187/314 (59%), Positives = 242/314 (77%), Gaps = 3/314 (0%)
Query: 94 KDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEV 152
+DVP A+++ LF++KL CCV+FDF +DP +LK K++KR L E+V+Y++ E
Sbjct: 2 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61
Query: 153 VMQEMVKMVSANLFRTLTSPPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASP 212
+ E+V M + N+FRTL PP N FD EE+EP+++ AWPHLQ+VYEF LRF+ SP
Sbjct: 62 IYPEVVHMFAVNMFRTL--PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119
Query: 213 ETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIF 272
+ +AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179
Query: 273 YRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQLS 332
YRFI+ETE HNGIAELLEILGSIINGFALPLKEEHK+FL++ L+PLHK K +++YH QL+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239
Query: 333 YCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLF 392
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL ELEE+L+ +P EF + M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299
Query: 393 HQIGRCLSSSHFQV 406
Q+ +C+SS HFQV
Sbjct: 300 RQLAKCVSSPHFQV 313
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 413 | |||
| d2jaka1 | 343 | Serine/threonine-protein phosphatase 2A regulatory | 100.0 |
| >d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: B56-like domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-117 Score=887.24 Aligned_cols=318 Identities=58% Similarity=1.054 Sum_probs=300.0
Q ss_pred CCCCChHHhHHHHHHHHhccCccccc-cCCCCCchhHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhhccccCCC
Q 015127 93 FKDVPNAEKQNLFVRKLNLCCVVFDF-TDPTKNLKEKDIKRQTLVELVDYVSSANGKFPEVVMQEMVKMVSANLFRTLTS 171 (413)
Q Consensus 93 ~~dv~~~e~~~Lf~~Kl~~C~~ifDF-sDp~~d~k~Ke~Kr~tL~ELvd~v~~~~~~lte~~~~~i~~Mis~NiFR~lPp 171 (413)
|+|||++||++||++||++||++||| +||++|+++|++||+||+||+||++++++++||++++++++||++||||++||
T Consensus 1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp 80 (343)
T d2jaka1 1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP 80 (343)
T ss_dssp CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 68999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHHhcCCccCHHHHhccCCHHHHHHHhhccCCCChhHHHHHHHHHH
Q 015127 172 PPRENKVLEAFDLEEEEPSMDPAWPHLQVVYEFLLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDPREREYLKTVLH 251 (413)
Q Consensus 172 ~~~~~~~~~~~d~eedep~~EpsWPHLqlVYelllrfv~s~~~d~~~ak~~id~~Fi~~Ll~lfdSeDpRERd~LKtiLH 251 (413)
.+... ..+||+|||||++|+||||||+||++|+||++|+++|++.+|+|||++||.+|+++|+|+||||||+||++||
T Consensus 81 ~~~~~--~~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~ 158 (343)
T d2jaka1 81 SSNPT--GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLH 158 (343)
T ss_dssp -----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCcc--ccccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 87644 3689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCChHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHhccCCCCccccchhHH
Q 015127 252 RIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCVAMYHQQL 331 (413)
Q Consensus 252 rIY~Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLEIlgSIInGFa~PLKeEHk~fl~rvLiPLHk~~~~~~Yh~qL 331 (413)
||||||+++|++||++|+++|++||||+++||||+|||||+|||||||++|||+||+.|+.++|+||||+++++.||+||
T Consensus 159 ~iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL 238 (343)
T d2jaka1 159 RIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQL 238 (343)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHhhhcCCCCCchhHHHhHHHHHHHHhcCChhhHHhhHHHHHHHHHHhhCCCchHHHhhhh
Q 015127 332 SYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVMFLGELEEVLESTQPGEFQRCMVPLFHQIGRCLSSSHFQVGSSLL 411 (413)
Q Consensus 332 ~yCi~qFveKDp~L~~~vi~glLk~WP~tns~KEvlFL~EleeiLe~~~~~ef~~i~~pLF~~la~Cl~S~hfqVAErAL 411 (413)
+||++||++|||+|+.++++||+||||+||++||++||+||++||+.+++++|+++++|+|++||+|++|+|||||||||
T Consensus 239 ~~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl 318 (343)
T d2jaka1 239 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERAL 318 (343)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 015127 412 S 412 (413)
Q Consensus 412 ~ 412 (413)
.
T Consensus 319 ~ 319 (343)
T d2jaka1 319 Y 319 (343)
T ss_dssp G
T ss_pred H
Confidence 5
|