Citrus Sinensis ID: 015160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | 2.2.26 [Sep-21-2011] | |||||||
| Q80UY1 | 400 | UPF0586 protein C9orf41 h | yes | no | 0.611 | 0.63 | 0.5 | 2e-71 | |
| Q5BJZ6 | 400 | UPF0586 protein C9orf41 h | yes | no | 0.611 | 0.63 | 0.5 | 4e-71 | |
| Q8N4J0 | 409 | UPF0586 protein C9orf41 O | yes | no | 0.611 | 0.616 | 0.492 | 8e-70 | |
| Q9I7X6 | 439 | UPF0586 protein CG11596 O | yes | no | 0.623 | 0.585 | 0.445 | 1e-61 | |
| Q9Y7J3 | 373 | UPF0586 protein C1778.07 | yes | no | 0.674 | 0.745 | 0.415 | 2e-56 | |
| Q54ST2 | 463 | UPF0586 protein OS=Dictyo | yes | no | 0.667 | 0.593 | 0.410 | 7e-55 | |
| P53934 | 400 | UPF0586 protein YNL092W O | yes | no | 0.611 | 0.63 | 0.315 | 1e-34 | |
| Q03648 | 457 | Uncharacterized protein Y | no | no | 0.427 | 0.385 | 0.290 | 2e-06 |
| >sp|Q80UY1|CI041_MOUSE UPF0586 protein C9orf41 homolog OS=Mus musculus PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/260 (50%), Positives = 175/260 (67%), Gaps = 8/260 (3%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA E++ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
PD+ P S FSM GDF E+Y S+ AWD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 LFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNAWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 381
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 382 TNPRSMMQNRYFTAFWTMRK 401
N SMM+ Y + +RK
Sbjct: 379 VNDLSMMKYYYECVLFVVRK 398
|
Mus musculus (taxid: 10090) |
| >sp|Q5BJZ6|CI041_RAT UPF0586 protein C9orf41 homolog OS=Rattus norvegicus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/260 (50%), Positives = 174/260 (66%), Gaps = 8/260 (3%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSGTGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA EI+ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEVDKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
PD+ P S FSM GDF E+Y S+ WD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 FFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 381
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 382 TNPRSMMQNRYFTAFWTMRK 401
N SMM+ Y + +RK
Sbjct: 379 VNDLSMMKYYYECVLFVVRK 398
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8N4J0|CI041_HUMAN UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (675), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 128/260 (49%), Positives = 174/260 (66%), Gaps = 8/260 (3%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CY+PI++E+ FP R S LVPGAGLGR
Sbjct: 154 DMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGR 213
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA EI+ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 214 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 273
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
PD+ P S FSM GDF E+Y S+ WD + TCFFIDTAHN+++YI+ I +
Sbjct: 274 FFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWK 330
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 381
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 331 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFKVEVEKESVLSTYT 387
Query: 382 TNPRSMMQNRYFTAFWTMRK 401
N SMM+ Y + +RK
Sbjct: 388 VNDLSMMKYYYECVLFVVRK 407
|
Homo sapiens (taxid: 9606) |
| >sp|Q9I7X6|U586_DROME UPF0586 protein CG11596 OS=Drosophila melanogaster GN=CG11596 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 166/265 (62%), Gaps = 8/265 (3%)
Query: 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE-SPPACLVPG 197
NV D+D+ + ++ I RDW+ EG ER+Q YKPI++ + A F + E LVPG
Sbjct: 119 NVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPG 178
Query: 198 AGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257
AGLGRL E++ LG+ +GNEFSY+M+I S+F+LN + ++ +YPW+H N+L D
Sbjct: 179 AGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRRED 238
Query: 258 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 317
Q+ PV PD+ P F + GDF+EVY P+ A++ V TCFFID A+N++++I
Sbjct: 239 QVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPN---AYNCVATCFFIDCANNVIDFI 295
Query: 318 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT-I 376
I +IL GG+W+NLGPLLYHF+D+ GQ SIE + ED+ + GF EK +T I
Sbjct: 296 RTIYKILVPGGIWVNLGPLLYHFSDVSGQN---SIEPAFEDLCIIMESVGFVIEKSRTGI 352
Query: 377 ETTYTTNPRSMMQNRYFTAFWTMRK 401
T Y NP SM Q+ Y + FW RK
Sbjct: 353 RTKYAQNPSSMKQSEYQSLFWVCRK 377
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9Y7J3|YOI7_SCHPO UPF0586 protein C1778.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.07 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 168/289 (58%), Gaps = 11/289 (3%)
Query: 122 GNASSPA-CDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDA 180
NA+ P C D + +V + + KV ++ I RDW+ E ER Y P +EEL++
Sbjct: 77 ANAAIPVFCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNS 136
Query: 181 LFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGE 239
LFP+ S S LVPG+GLGRLA +I+ GF QGNEFSY+M++ S FILN + +
Sbjct: 137 LFPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQ 196
Query: 240 WNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAW 298
+ +YP+IHS N + DQ+R ++IPD P+ ++ FSM GDF+EVY ++
Sbjct: 197 FLVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSF 256
Query: 299 DAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS------- 351
V TCFFIDT NI++Y++ I L DGG WINLGPLLYHF G + S
Sbjct: 257 QVVATCFFIDTTKNILDYLDTIKNCLVDGGYWINLGPLLYHFES-EGTSNSNSDSQQQPF 315
Query: 352 IELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMR 400
+EL+LE + V GFE K +++TTY + RSM++ Y +W R
Sbjct: 316 VELTLEQLFYVMDSMGFEVLKHNSVDTTYMGDKRSMLEWIYHPHYWVCR 364
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54ST2|U586_DICDI UPF0586 protein OS=Dictyostelium discoideum GN=DDB_G0282239 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 183/302 (60%), Gaps = 27/302 (8%)
Query: 110 NQSCSNDFTDSNGNASSPACDWLDPSI--QLNVPLADVDKVRCIIRNIVRDWAAEGKTER 167
N+ C N F+ S+ N+++ +DP+ + + +D+++ IR +VR+W+ EGK ER
Sbjct: 171 NEHC-NIFSQSSDNSANSE-RIVDPTNLDHIKIDYFMMDQLKSTIRQLVREWSEEGKLER 228
Query: 168 DQCYKPILEELDAL-----FPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYY 222
DQ ++PI ++L + F RSK PGAGLGRL LEI+ LGF SQG E+S+
Sbjct: 229 DQAFEPIKQQLLEIYGHIPFQERSK---IRVYSPGAGLGRLCLEIASLGFSSQGIEYSFM 285
Query: 223 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI-----HPASAGITEG 277
M+I S+F+LN E E+ I+P+IH N L D DQLR V+IPD+ P + E
Sbjct: 286 MLIVSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALE- 344
Query: 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337
FSM GDF + + S +D + TCFFIDTA NI+EY++ IS+ILK GG WIN GPLL
Sbjct: 345 FSMSAGDFTKNIEENS----FDCICTCFFIDTAPNILEYVDCISKILKPGGTWINFGPLL 400
Query: 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFW 397
YH A + + SIELS E ++ + F+F+KE+ + Y +N +S++++ Y F+
Sbjct: 401 YHHA-----KKKDSIELSYEQLRYLICKKQFQFKKEEIRDAEYCSNQKSLLRSIYKCQFF 455
Query: 398 TM 399
+
Sbjct: 456 VV 457
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P53934|YNJ2_YEAST UPF0586 protein YNL092W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL092W PE=1 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 144/301 (47%), Gaps = 49/301 (16%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRL 203
D+ K ++ + R+W+AE +ER+ ++ L L P ++ L+PG G GRL
Sbjct: 98 DMSKTCSLLTQVYREWSAEAISERNCLNSRLVPFLKTLSPPKAD-----ILIPGCGTGRL 152
Query: 204 ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263
+++S +G+ +GNEFSY+M++ S ++LN + IYP+IH + DQL P+
Sbjct: 153 LVDLSRMGYNCEGNEFSYHMLLVSQYMLNAGLLQNQIIIYPFIHCFSHWKKIEDQLSPIK 212
Query: 264 IPDIHPASAGITEG-FSMCGGDFVEVY--------------------SDPSQVGAWDAVV 302
+PDI S+ G S+C G FV+ Y S + D VV
Sbjct: 213 VPDIEAWSSNKGMGSMSICAGSFVDCYGRNQGTKISSHYTFSRRMQLSRAKAENSKDVVV 272
Query: 303 TCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE------------- 349
T FFIDT NI++Y++ I +LK GG+W N GPLLYHF + +G E
Sbjct: 273 TNFFIDTGSNILDYLDTIGHVLKPGGIWCNFGPLLYHFENDHGVETTYEVNPYSGFQDKI 332
Query: 350 ------MSIELSLEDVKRVAL-HYGFEF-EKEKTIETTYT--TNPRSMMQNRYFTAFWTM 399
M +ELS +D+ +A H FE +E I Y P S Y +W +
Sbjct: 333 NDYTPLMGLELSSDDIISIATNHLDFELIRRESGILCGYGRYAGPESCAMPGYMCHYWIL 392
Query: 400 R 400
+
Sbjct: 393 K 393
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q03648|YM59_YEAST Uncharacterized protein YMR209C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR209C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 20/196 (10%)
Query: 152 IRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLV-PGAGLGRLA--LEIS 208
+ ++ RD+++ ERD I+ ++ + +V PGAG+G L+ L +
Sbjct: 210 LAHLCRDFSSYYSVERDPLQNFIISRINHHVISAGDMKEKILIVTPGAGVGGLSHTLATT 269
Query: 209 HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS-NCNSLSDSDQLRPVSIPDI 267
E S M IC+ F L E + I P++ +C ++ D +QLR +S D+
Sbjct: 270 FPKIQVDSIELSALMYICNLFAL---EYKHDVKIRPFVQQYSCQTVFD-NQLRSLS-ADL 324
Query: 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEY---IEIISR 322
+ G GDF YS S+ +D ++ C +FIDTA N+ EY IE + +
Sbjct: 325 --SKVGHRSNLDPLWGDFTR-YSPISK--DYDKIIICSAYFIDTAENMFEYLSSIEALKK 379
Query: 323 ILKDGGVWINLGPLLY 338
K+ W+N+GPL Y
Sbjct: 380 YCKELH-WVNVGPLKY 394
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | ||||||
| 296089545 | 498 | unnamed protein product [Vitis vinifera] | 0.980 | 0.811 | 0.722 | 1e-174 | |
| 356577478 | 627 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.650 | 0.727 | 1e-172 | |
| 356551269 | 456 | PREDICTED: UPF0586 protein C9orf41 homol | 0.910 | 0.822 | 0.699 | 1e-165 | |
| 449463611 | 492 | PREDICTED: UPF0586 protein C9orf41 homol | 0.958 | 0.802 | 0.714 | 1e-164 | |
| 297822971 | 508 | hypothetical protein ARALYDRAFT_902264 [ | 0.936 | 0.759 | 0.675 | 1e-153 | |
| 30685202 | 504 | N2227-like domain-containing protein [Ar | 0.946 | 0.773 | 0.664 | 1e-152 | |
| 359493498 | 611 | PREDICTED: uncharacterized protein LOC10 | 0.614 | 0.414 | 0.882 | 1e-150 | |
| 224086635 | 281 | predicted protein [Populus trichocarpa] | 0.662 | 0.971 | 0.919 | 1e-150 | |
| 238479409 | 571 | N2227-like domain-containing protein [Ar | 0.946 | 0.683 | 0.569 | 1e-143 | |
| 115464829 | 494 | Os05g0511300 [Oryza sativa Japonica Grou | 0.953 | 0.795 | 0.617 | 1e-141 |
| >gi|296089545|emb|CBI39364.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/418 (72%), Positives = 336/418 (80%), Gaps = 14/418 (3%)
Query: 1 MNSYFIFAMLQAFDPPLDMSQDMDICEDSHVSHTHYDNQSDG-RNVCSGHSTSSSGRMCC 59
+NS+FIF MLQAF+PPLDMSQD D+CE+ H+ + D+ G RN+C + S+SGR+
Sbjct: 81 VNSFFIFNMLQAFEPPLDMSQDTDMCENPHLENALDDHLDSGERNICPCEAASTSGRISF 140
Query: 60 SKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSND--- 116
+ D A +S + + E N+E TE E C N ET+Q+ S+D
Sbjct: 141 PQSDQASYG-KSDITCKSPEGVNNKELGTESCCESGPGICNAYPGNNRETDQAGSSDVKI 199
Query: 117 ---------FTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTER 167
F DSNGN SS +WLDPS QLNVPL DVDKVRCIIRNIVRDWAAEG+ ER
Sbjct: 200 NNDEATPYSFADSNGNVSSSTHEWLDPSFQLNVPLVDVDKVRCIIRNIVRDWAAEGQKER 259
Query: 168 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227
DQCYKPILEELD LFPNRSK+ PP+CLVPGAGLGRLALEIS LGFISQGNEFSYYMMICS
Sbjct: 260 DQCYKPILEELDGLFPNRSKDRPPSCLVPGAGLGRLALEISCLGFISQGNEFSYYMMICS 319
Query: 228 SFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE 287
SFILN+ +TA EW IYPWIHSNCNSLS++DQLRPVSIPD+HPASAGITEGFSMCGGDFVE
Sbjct: 320 SFILNNAQTAEEWTIYPWIHSNCNSLSENDQLRPVSIPDMHPASAGITEGFSMCGGDFVE 379
Query: 288 VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347
VYSDPSQ+G WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN GPLLYHFAD+YGQE
Sbjct: 380 VYSDPSQIGVWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINFGPLLYHFADMYGQE 439
Query: 348 DEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVT 405
DEMSIELSLEDVK+VALHYGF+ EKE+TIETTYTTNPRSMMQNRYF AFWTMRKK V
Sbjct: 440 DEMSIELSLEDVKKVALHYGFQMEKERTIETTYTTNPRSMMQNRYFAAFWTMRKKPVA 497
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577478|ref|XP_003556852.1| PREDICTED: uncharacterized protein LOC100791662 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 301/414 (72%), Positives = 338/414 (81%), Gaps = 6/414 (1%)
Query: 1 MNSYFIFAMLQAFDPPLDMSQDMDICEDSHVSHTHYDNQ-SDGRNVCSGHSTSSSGRMCC 59
MN++FIF MLQAF+PPLDMSQD+D ED H T D+ S+G + CS S R+ C
Sbjct: 215 MNTHFIFGMLQAFEPPLDMSQDVDFSEDPHPESTQKDHLVSEGISACSCESVPV--RITC 272
Query: 60 SKGDHADCNEQ-SKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFT 118
S D C E + + +M +NEE + E + T S + + +ET++ C +
Sbjct: 273 SVSDQHRCVEGGNHTCISQAQMHSNEEVDIESCHQSNTGSHSPSMIHPKETSEYCGSPIA 332
Query: 119 DSNGNA--SSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILE 176
DSNGN +S WLDPS++LNVPL DVDKVRCIIRNIVRDWAAEGK ERDQCY PIL+
Sbjct: 333 DSNGNVPVTSSQQQWLDPSLKLNVPLVDVDKVRCIIRNIVRDWAAEGKNERDQCYSPILD 392
Query: 177 ELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTET 236
EL+ LFPNRSK+SPPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILNH++T
Sbjct: 393 ELNMLFPNRSKDSPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHSQT 452
Query: 237 AGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVG 296
AGEW IYPWIHSNCNSLSDSDQLRPVSIPD+HPASAGITEGFSMCGGDFVEVYSD SQVG
Sbjct: 453 AGEWTIYPWIHSNCNSLSDSDQLRPVSIPDMHPASAGITEGFSMCGGDFVEVYSDSSQVG 512
Query: 297 AWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSL 356
AWDAVVTCFFIDTAHNIVEYIEIIS+ILK+GGVWINLGPLLYHFAD+YGQ+DEMSIELSL
Sbjct: 513 AWDAVVTCFFIDTAHNIVEYIEIISKILKEGGVWINLGPLLYHFADMYGQDDEMSIELSL 572
Query: 357 EDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVTIVEQA 410
EDVKRVALHYGFE EKE+TIETTYT N RSMMQNRYF+AFWTMRKKS + +Q
Sbjct: 573 EDVKRVALHYGFELEKERTIETTYTANSRSMMQNRYFSAFWTMRKKSAAVQQQV 626
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551269|ref|XP_003543999.1| PREDICTED: UPF0586 protein C9orf41 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/416 (69%), Positives = 319/416 (76%), Gaps = 41/416 (9%)
Query: 1 MNSYFIFAMLQAFDPPLDMSQDMDICEDSHVSHTHYDNQ-SDGRNVCSGHSTSSSG---R 56
MN++FIF+MLQAF+PPLDMSQD D ED H D+ S+G + CS S G R
Sbjct: 75 MNTHFIFSMLQAFEPPLDMSQDADFSEDPHPESAQKDHLVSEGISACSCESAPEVGIESR 134
Query: 57 MCCSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSND 116
+ G+H+ +L + +ET + C +
Sbjct: 135 HQSNTGNHSP-----------------------------------RLIHTKETREYCGSP 159
Query: 117 FTDSNGNA--SSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPI 174
DS GN +S WL PS++LNVPL D DKVRCIIRNIVRDWAAEGK ERDQCY PI
Sbjct: 160 IADSKGNVPDTSSQQQWLAPSLKLNVPLVDADKVRCIIRNIVRDWAAEGKKERDQCYNPI 219
Query: 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234
LEEL+ LFPNRSKESPPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILNH+
Sbjct: 220 LEELNMLFPNRSKESPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHS 279
Query: 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQ 294
+TAGEW IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD SQ
Sbjct: 280 QTAGEWTIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDSSQ 339
Query: 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIEL 354
+GAWDAVVTCFFIDTAHNIVEYIEIIS+ILKDGGVWINLGPLLYHFAD+YGQ+DEMSIEL
Sbjct: 340 IGAWDAVVTCFFIDTAHNIVEYIEIISKILKDGGVWINLGPLLYHFADMYGQDDEMSIEL 399
Query: 355 SLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVTIVEQA 410
SLEDVKRVA HYGFEFE E+TIETTYT N RSMMQNRYF AFWTMRKKS + +Q
Sbjct: 400 SLEDVKRVAFHYGFEFENERTIETTYTANSRSMMQNRYFAAFWTMRKKSAAVQQQV 455
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463611|ref|XP_004149525.1| PREDICTED: UPF0586 protein C9orf41 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 298/417 (71%), Positives = 332/417 (79%), Gaps = 22/417 (5%)
Query: 2 NSYFIFAMLQAFDPPLDMSQDMDICEDSHVSHTHYDN-------QSDGR------NVCSG 48
NSYFIF MLQAF+PPLDMSQD D C+ S+ H H D ++G NVCSG
Sbjct: 80 NSYFIFNMLQAFEPPLDMSQDTDCCDGSYPDHAHDDQFCCRGERNANGNLCSRESNVCSG 139
Query: 49 HSTSSSGRMCCSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREE 108
TS+SGRMC + C E + ++ K T N+E E + LE +E
Sbjct: 140 EPTSTSGRMCSLESKQICCPEGAS--DSPKASTINQEVEN-------GVNHDQHLEEKEV 190
Query: 109 TNQSCSNDFTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERD 168
T++ + +D NGN S + +WLDPS+QLNVPL DVDKVRCIIRNIVRDWA EG+ ER+
Sbjct: 191 TDKHSGHCASDCNGNDCSSSHEWLDPSLQLNVPLVDVDKVRCIIRNIVRDWAEEGQKERE 250
Query: 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228
QCYKPILEEL +LFP+R KESPPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSS
Sbjct: 251 QCYKPILEELHSLFPDRKKESPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSS 310
Query: 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 288
FILNHT+ GEW IYPWIHSN NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV
Sbjct: 311 FILNHTQKVGEWTIYPWIHSNSNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 370
Query: 289 YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348
YSDPSQVG WDAVVTCFFIDTAHNI+EYIE+IS+ILKDGGVWINLGPLLYHFAD+YGQED
Sbjct: 371 YSDPSQVGLWDAVVTCFFIDTAHNIIEYIEVISKILKDGGVWINLGPLLYHFADMYGQED 430
Query: 349 EMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVT 405
EMSIE SLEDVK++ LHYGF FEKE+T+ETTYTTNPRSMMQNRY+ AFWTMRKKS T
Sbjct: 431 EMSIEPSLEDVKKIILHYGFVFEKERTVETTYTTNPRSMMQNRYYAAFWTMRKKSAT 487
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822971|ref|XP_002879368.1| hypothetical protein ARALYDRAFT_902264 [Arabidopsis lyrata subsp. lyrata] gi|297325207|gb|EFH55627.1| hypothetical protein ARALYDRAFT_902264 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/407 (67%), Positives = 315/407 (77%), Gaps = 21/407 (5%)
Query: 2 NSYFIFAMLQAFDPPLDMSQDMDICEDSHVS---HTHYDNQSDGRNVCSGHSTSSSGRMC 58
NSYFIF MLQAF+PP+D+SQ++D CEDS++ H Y + C T+S C
Sbjct: 110 NSYFIFNMLQAFEPPIDLSQELDGCEDSNLECAPHERYTLDERHDSSCQPALTNS----C 165
Query: 59 CSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSND-- 116
K E+SK + + EE + + E S + TN++C D
Sbjct: 166 TYK-------EESKHIREPITGVSIEELQRK---EAHDHSSKDDSADARITNKTCECDGG 215
Query: 117 -FTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPIL 175
+G+ S + DWLD S+Q +VPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPIL
Sbjct: 216 QLNHDHGSVSFSSHDWLDSSLQTHVPLVDVDKVRCIIRNIVRDWAAEGQRERDQCYKPIL 275
Query: 176 EELDALFPNRSKES-PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234
EELD+LFP+RSKES PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN++
Sbjct: 276 EELDSLFPDRSKESTPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYS 335
Query: 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQ 294
+ GEW IYPWIHSNCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S
Sbjct: 336 QVPGEWTIYPWIHSNCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSH 395
Query: 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIEL 354
G WDAVVTCFFIDTAHN++EYIE IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIEL
Sbjct: 396 AGMWDAVVTCFFIDTAHNVIEYIETISKILKDGGVWINLGPLLYHFADTYGHENEMSIEL 455
Query: 355 SLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRK 401
SLEDVKRVA HYGF EKE+TIETTYTTNPR+MMQNRY+TAFWTMRK
Sbjct: 456 SLEDVKRVASHYGFVIEKERTIETTYTTNPRAMMQNRYYTAFWTMRK 502
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685202|ref|NP_850185.1| N2227-like domain-containing protein [Arabidopsis thaliana] gi|20259498|gb|AAM13869.1| unknown protein [Arabidopsis thaliana] gi|22136766|gb|AAM91702.1| unknown protein [Arabidopsis thaliana] gi|330253550|gb|AEC08644.1| N2227-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 269/405 (66%), Positives = 311/405 (76%), Gaps = 15/405 (3%)
Query: 2 NSYFIFAMLQAFDPPLDMSQDMDICEDSHVS---HTHYDNQSDGRNVCSGHSTSSSGRMC 58
NSYFIF MLQAF+PP+D+SQ++D CEDS++ H Y + C T+S C
Sbjct: 105 NSYFIFNMLQAFEPPIDLSQELDGCEDSNLDCAPHERYTLDERHDSSCQPALTNS----C 160
Query: 59 CSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFT 118
K E+SK + + EE + + ++ ++T
Sbjct: 161 TYK-------EESKHIRDPITGVSIEELQRKEAHDHSPKDDSADTRINDKTCDCHEGQLN 213
Query: 119 DSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEEL 178
+G+ S + DWLD S+Q +VPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEEL
Sbjct: 214 HDHGSVSFSSHDWLDSSLQTHVPLVDVDKVRCIIRNIVRDWAAEGQRERDQCYKPILEEL 273
Query: 179 DALFPNRSKES-PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETA 237
D+LFP+R KES PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+T+
Sbjct: 274 DSLFPDRLKESTPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYTQVP 333
Query: 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGA 297
GEW IYPWIHSNCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S G
Sbjct: 334 GEWTIYPWIHSNCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSHAGM 393
Query: 298 WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLE 357
WDAVVTCFFIDTAHN++EYI+ IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIELSLE
Sbjct: 394 WDAVVTCFFIDTAHNVIEYIQTISKILKDGGVWINLGPLLYHFADTYGHENEMSIELSLE 453
Query: 358 DVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402
DVKRVA H+GF EKE+TIETTYTTNPR+MMQNRY+TAFWTMRKK
Sbjct: 454 DVKRVASHFGFVIEKERTIETTYTTNPRAMMQNRYYTAFWTMRKK 498
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493498|ref|XP_003634616.1| PREDICTED: uncharacterized protein LOC100852521 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 249/282 (88%), Positives = 263/282 (93%)
Query: 124 ASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFP 183
SS +WLDPS QLNVPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEELD LFP
Sbjct: 329 VSSSTHEWLDPSFQLNVPLVDVDKVRCIIRNIVRDWAAEGQKERDQCYKPILEELDGLFP 388
Query: 184 NRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIY 243
NRSK+ PP+CLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+ +TA EW IY
Sbjct: 389 NRSKDRPPSCLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNNAQTAEEWTIY 448
Query: 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 303
PWIHSNCNSLS++DQLRPVSIPD+HPASAGITEGFSMCGGDFVEVYSDPSQ+G WDAVVT
Sbjct: 449 PWIHSNCNSLSENDQLRPVSIPDMHPASAGITEGFSMCGGDFVEVYSDPSQIGVWDAVVT 508
Query: 304 CFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVA 363
CFFIDTAHNIVEYIEIISRILKDGGVWIN GPLLYHFAD+YGQEDEMSIELSLEDVK+VA
Sbjct: 509 CFFIDTAHNIVEYIEIISRILKDGGVWINFGPLLYHFADMYGQEDEMSIELSLEDVKKVA 568
Query: 364 LHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSVT 405
LHYGF+ EKE+TIETTYTTNPRSMMQNRYF AFWTMRKK V
Sbjct: 569 LHYGFQMEKERTIETTYTTNPRSMMQNRYFAAFWTMRKKPVA 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086635|ref|XP_002307920.1| predicted protein [Populus trichocarpa] gi|222853896|gb|EEE91443.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/273 (91%), Positives = 261/273 (95%)
Query: 130 DWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKES 189
DWLDPS+QL VP+ DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEEL++LFP+RS ES
Sbjct: 9 DWLDPSLQLRVPMVDVDKVRCIIRNIVRDWAAEGQKERDQCYKPILEELNSLFPDRSNES 68
Query: 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249
PP CLVPGAGLGRLALEIS LGF+SQGNEFSYYMMICSSFILN TETAGEW IYPWIHSN
Sbjct: 69 PPTCLVPGAGLGRLALEISCLGFVSQGNEFSYYMMICSSFILNQTETAGEWTIYPWIHSN 128
Query: 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT 309
CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVG WDAVVTCFFIDT
Sbjct: 129 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGVWDAVVTCFFIDT 188
Query: 310 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFE 369
AHNIVEYIEIISRILKDGGVWINLGPLLYHFAD+YGQEDEMSIELSLEDVKRVAL+YGFE
Sbjct: 189 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADVYGQEDEMSIELSLEDVKRVALNYGFE 248
Query: 370 FEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402
EKE TIETTYTTNPR+MMQNRYF AFWTMRKK
Sbjct: 249 VEKESTIETTYTTNPRAMMQNRYFPAFWTMRKK 281
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238479409|ref|NP_001154543.1| N2227-like domain-containing protein [Arabidopsis thaliana] gi|330253551|gb|AEC08645.1| N2227-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/472 (56%), Positives = 311/472 (65%), Gaps = 82/472 (17%)
Query: 2 NSYFIFAMLQAFDPPLDMSQDMDICEDSHVS---HTHYDNQSDGRNVCSGHSTSSSGRMC 58
NSYFIF MLQAF+PP+D+SQ++D CEDS++ H Y + C T+S C
Sbjct: 105 NSYFIFNMLQAFEPPIDLSQELDGCEDSNLDCAPHERYTLDERHDSSCQPALTNS----C 160
Query: 59 CSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFT 118
K E+SK + + EE + + ++ ++T
Sbjct: 161 TYK-------EESKHIRDPITGVSIEELQRKEAHDHSPKDDSADTRINDKTCDCHEGQLN 213
Query: 119 DSNGNASSPACDWLDPSIQLNVPLADVDK------------------------------- 147
+G+ S + DWLD S+Q +VPL DVDK
Sbjct: 214 HDHGSVSFSSHDWLDSSLQTHVPLVDVDKRETKIIMCHVRTYSQSLLVPLGSLVSYEGWF 273
Query: 148 --------------------VRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSK 187
VRCIIRNIVRDWAAEG+ ERDQCYKPILEELD+LFP+R K
Sbjct: 274 AHVALHGEVNPVELKCTFLHVRCIIRNIVRDWAAEGQRERDQCYKPILEELDSLFPDRLK 333
Query: 188 ES-----------------PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFI 230
ES PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFI
Sbjct: 334 ESTCCIHSPYKVDYMICSTPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFI 393
Query: 231 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS 290
LN+T+ GEW IYPWIHSNCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY+
Sbjct: 394 LNYTQVPGEWTIYPWIHSNCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYN 453
Query: 291 DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 350
+ S G WDAVVTCFFIDTAHN++EYI+ IS+ILKDGGVWINLGPLLYHFAD YG E+EM
Sbjct: 454 ESSHAGMWDAVVTCFFIDTAHNVIEYIQTISKILKDGGVWINLGPLLYHFADTYGHENEM 513
Query: 351 SIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402
SIELSLEDVKRVA H+GF EKE+TIETTYTTNPR+MMQNRY+TAFWTMRKK
Sbjct: 514 SIELSLEDVKRVASHFGFVIEKERTIETTYTTNPRAMMQNRYYTAFWTMRKK 565
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115464829|ref|NP_001056014.1| Os05g0511300 [Oryza sativa Japonica Group] gi|48475071|gb|AAT44140.1| unknown protein [Oryza sativa Japonica Group] gi|113579565|dbj|BAF17928.1| Os05g0511300 [Oryza sativa Japonica Group] gi|215697939|dbj|BAG92145.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/426 (61%), Positives = 306/426 (71%), Gaps = 33/426 (7%)
Query: 1 MNSYFIFAMLQAFDPPLDMSQDMDI----CEDSHVSHTHYD-NQSDGRNVCSGHSTSSSG 55
MN+ FI ML+AF+PP DMSQ +D+ C ++ H H D S R C S S S
Sbjct: 70 MNASFIMDMLEAFEPPFDMSQHVDMDGHDCAENMHGHCHADCAHSVDRGDCFRSSISVSN 129
Query: 56 RMC-----CSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETN 110
C + D K E ++E T N++E + +E + KL + +
Sbjct: 130 SELHEPDGCPRKD-------DKTHELSRE-TDNKDEVVD--MESCSRPVGDKLGASQVED 179
Query: 111 QSCSND-FTDSNGNASSPAC------------DWLDPSIQLNVPLADVDKVRCIIRNIVR 157
+SC+ D D+ N C ++ PS+QLNVP DVDKVRCIIRNIVR
Sbjct: 180 KSCNGDKAMDAAANCQDTDCVACSADENVIPQQFMAPSLQLNVPPIDVDKVRCIIRNIVR 239
Query: 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGN 217
DWA EG+ ERD+CYKPILEEL+ LFPNRSKE PP+CLVPGAGLGRLALEIS LGF+SQGN
Sbjct: 240 DWAQEGQKERDECYKPILEELNRLFPNRSKERPPSCLVPGAGLGRLALEISTLGFVSQGN 299
Query: 218 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG 277
EFSYYMMICSSFILNHT+ EW IYPWIHSNCNSLSD+DQLRPVS PDIHP+S+GITEG
Sbjct: 300 EFSYYMMICSSFILNHTQETNEWTIYPWIHSNCNSLSDNDQLRPVSFPDIHPSSSGITEG 359
Query: 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337
FSMC GDFVEVY++ SQ +WDAVVTCFF+DTAHNIVEYIEIIS++LKDGGVWINLGPLL
Sbjct: 360 FSMCAGDFVEVYNEESQESSWDAVVTCFFLDTAHNIVEYIEIISKVLKDGGVWINLGPLL 419
Query: 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFW 397
YHFAD YG +D+MSIELSLEDVKRVA HYGF E EK I+TTYT N +SMMQNRY AFW
Sbjct: 420 YHFADSYGPDDDMSIELSLEDVKRVAYHYGFVMEVEKMIDTTYTANMKSMMQNRYRAAFW 479
Query: 398 TMRKKS 403
TMRK +
Sbjct: 480 TMRKNA 485
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 412 | ||||||
| TAIR|locus:2045542 | 571 | AT2G32170 [Arabidopsis thalian | 0.519 | 0.374 | 0.799 | 1.5e-130 | |
| TAIR|locus:2045547 | 463 | AT2G32160 "AT2G32160" [Arabido | 0.728 | 0.647 | 0.702 | 3.2e-121 | |
| ZFIN|ZDB-GENE-050306-48 | 373 | zgc:112985 "zgc:112985" [Danio | 0.611 | 0.675 | 0.5 | 4.5e-66 | |
| MGI|MGI:1914633 | 400 | 2410127L17Rik "RIKEN cDNA 2410 | 0.611 | 0.63 | 0.473 | 6.2e-62 | |
| FB|FBgn0023522 | 439 | CG11596 [Drosophila melanogast | 0.623 | 0.585 | 0.418 | 1.1e-53 | |
| ASPGD|ASPL0000056516 | 418 | AN0865 [Emericella nidulans (t | 0.485 | 0.478 | 0.502 | 1.1e-52 | |
| POMBASE|SPBC1778.07 | 373 | SPBC1778.07 "methyltransferase | 0.679 | 0.750 | 0.397 | 1.8e-48 | |
| DICTYBASE|DDB_G0282239 | 463 | DDB_G0282239 "N2227-like domai | 0.674 | 0.600 | 0.391 | 8.8e-47 | |
| UNIPROTKB|G4MPS8 | 418 | MGG_09217 "Uncharacterized pro | 0.5 | 0.492 | 0.403 | 1.2e-40 | |
| CGD|CAL0000364 | 395 | orf19.592 [Candida albicans (t | 0.327 | 0.341 | 0.349 | 6.5e-33 |
| TAIR|locus:2045542 AT2G32170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 1.5e-130, Sum P(3) = 1.5e-130
Identities = 171/214 (79%), Positives = 187/214 (87%)
Query: 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248
+PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+T+ GEW IYPWIHS
Sbjct: 352 TPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYTQVPGEWTIYPWIHS 411
Query: 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID 308
NCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S G WDAVVTCFFID
Sbjct: 412 NCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFID 471
Query: 309 TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGX 368
TAHN++EYI+ IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIELSLEDVKRVA H+G
Sbjct: 472 TAHNVIEYIQTISKILKDGGVWINLGPLLYHFADTYGHENEMSIELSLEDVKRVASHFGF 531
Query: 369 XXXXXXXXXXXXXXNPRSMMQNRYFTAFWTMRKK 402
NPR+MMQNRY+TAFWTMRKK
Sbjct: 532 VIEKERTIETTYTTNPRAMMQNRYYTAFWTMRKK 565
|
|
| TAIR|locus:2045547 AT2G32160 "AT2G32160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1126 (401.4 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
Identities = 215/306 (70%), Positives = 243/306 (79%)
Query: 103 LENREE--TNQSCSND---FTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVR 157
L+N E N++C D +G+ + DWLD S+Q +VPL DV+KVR +IRNIVR
Sbjct: 152 LKNAEIRLNNKTCEFDGGHLNHDHGSVPFSSHDWLDSSLQAHVPLVDVNKVRWVIRNIVR 211
Query: 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFISQG 216
DW AEG+ ERD+CYKPILEELD+LFP+R KES PACLVPGAGLGRLALEIS LGF SQG
Sbjct: 212 DWGAEGQRERDECYKPILEELDSLFPDRHKESTRPACLVPGAGLGRLALEISCLGFRSQG 271
Query: 217 NEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITE 276
NE SYYMM+CSSFILN+T+ GEW IYPWIH+NCNSLSD DQLRP+SIPDIHPASAG+TE
Sbjct: 272 NEVSYYMMLCSSFILNYTQLPGEWTIYPWIHTNCNSLSDDDQLRPISIPDIHPASAGVTE 331
Query: 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336
FSMC GDFVEV+++ SQ G WDAVVTCFFIDTAHNI+EYIE IS+ILKDGGV INLGPL
Sbjct: 332 SFSMCRGDFVEVFNESSQAGMWDAVVTCFFIDTAHNIIEYIETISKILKDGGVLINLGPL 391
Query: 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXXXXXXXNPRSMMQNRYFTAF 396
LYHFAD G E+EMSIELSLEDVKRVA HYG NPRSMM+NRY+ F
Sbjct: 392 LYHFADEQGLENEMSIELSLEDVKRVASHYGFEMEKEKTIETTYSTNPRSMMKNRYYPVF 451
Query: 397 WTMRKK 402
WTMRKK
Sbjct: 452 WTMRKK 457
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| ZFIN|ZDB-GENE-050306-48 zgc:112985 "zgc:112985" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 130/260 (50%), Positives = 171/260 (65%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFP-NRSKESPPACLVPGAGLGR 202
D+DK++ I+ VRDW+ GK ERD CYKPI++E+ LFP ++ S LVPGAGLGR
Sbjct: 117 DMDKLKSTIKQFVRDWSEAGKAERDSCYKPIIDEIQRLFPPDQCDVSQVRVLVPGAGLGR 176
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA EI+HLG+ QGNE+S++M+ S+F+LN + +YPWIH N+ + SDQ RPV
Sbjct: 177 LAWEIAHLGYSCQGNEWSFFMLFSSNFVLNRCDKENALTLYPWIHQFSNNKASSDQTRPV 236
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
S PD++P S FSM GDF EVY+DP WD V TCFFIDTAHN+++YIE I
Sbjct: 237 SFPDVNPQSLPEDSDFSMVAGDFQEVYNDPEM---WDCVATCFFIDTAHNVLDYIETIWN 293
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXX-XXXX 381
ILK GGVW+NLGPLLYH+ ++ +E+SIELS ED+K VA+ YG
Sbjct: 294 ILKPGGVWLNLGPLLYHYENM---ANELSIELSYEDIKAVAMKYGFVLELERESVPSTYT 350
Query: 382 XNPRSMMQNRYFTAFWTMRK 401
N RSM++ Y + F+ +RK
Sbjct: 351 ENDRSMLKYLYDSVFFIVRK 370
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| MGI|MGI:1914633 2410127L17Rik "RIKEN cDNA 2410127L17 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
Identities = 123/260 (47%), Positives = 164/260 (63%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA E++ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
PD+ P S FSM GDF E+YS+ AWD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 LFPDVDPHSLPPGSNFSMTAGDFQEIYSE---CNAWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXXXXXXX 382
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YG
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 383 -NPRSMMQNRYFTAFWTMRK 401
N SMM+ Y + +RK
Sbjct: 379 VNDLSMMKYYYECVLFVVRK 398
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| FB|FBgn0023522 CG11596 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 111/265 (41%), Positives = 158/265 (59%)
Query: 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA-CLVPG 197
NV D+D+ + ++ I RDW+ EG ER+Q YKPI++ + A F + E LVPG
Sbjct: 119 NVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPG 178
Query: 198 AGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257
AGLGRL E++ LG+ +GNEFSY+M+I S+F+LN + ++ +YPW+H N+L D
Sbjct: 179 AGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRRED 238
Query: 258 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 317
Q+ PV PD+ P F + GDF+EVY P+ A++ V TCFFID A+N++++I
Sbjct: 239 QVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPN---AYNCVATCFFIDCANNVIDFI 295
Query: 318 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXX 377
I +IL GG+W+NLGPLLYHF+D+ GQ SIE + ED+ + G
Sbjct: 296 RTIYKILVPGGIWVNLGPLLYHFSDVSGQN---SIEPAFEDLCIIMESVGFVIEKSRTGI 352
Query: 378 XXXXX-NPRSMMQNRYFTAFWTMRK 401
NP SM Q+ Y + FW RK
Sbjct: 353 RTKYAQNPSSMKQSEYQSLFWVCRK 377
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| ASPGD|ASPL0000056516 AN0865 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 105/209 (50%), Positives = 134/209 (64%)
Query: 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR-SKESPPACLVPGAGLG 201
AD++K IR RDW+AEG+ ER+ CY P+L +LD FP++ +E LVPGAGLG
Sbjct: 126 ADINKAHSTIRQFYRDWSAEGQAEREACYIPVLRDLDLEFPDKLEREEFVKVLVPGAGLG 185
Query: 202 RLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261
RL EI GF ++GNE SY+ ++ SS++LNHTE A +YP+ N LS QLR
Sbjct: 186 RLVFEICRAGFAAEGNEISYHQLLASSWVLNHTEGAQRHALYPFALHFSNILSREQQLRK 245
Query: 262 VSIPDIHPASA-------GITEG-FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI 313
V IPD+HPA+A G G SM DFV +YS PSQ A+DAV T FFIDTA N+
Sbjct: 246 VMIPDVHPATAMLEAQASGTPFGTMSMSAADFVVLYSSPSQTDAFDAVATVFFIDTAPNL 305
Query: 314 VEYIEIISRILKDGGVWINLGPLLYHFAD 342
+ YIE + LK G+WIN+GPLL+HF D
Sbjct: 306 IRYIEAVRNCLKSNGIWINVGPLLWHFED 334
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| POMBASE|SPBC1778.07 SPBC1778.07 "methyltransferase N2227 family" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 116/292 (39%), Positives = 164/292 (56%)
Query: 123 NASSPA-CDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDAL 181
NA+ P C D + +V + + KV ++ I RDW+ E ER Y P +EEL++L
Sbjct: 78 NAAIPVFCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNSL 137
Query: 182 FPNRSKE-SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEW 240
FP+ S + S LVPG+GLGRLA +I+ GF QGNEFSY+M++ S FILN + ++
Sbjct: 138 FPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQF 197
Query: 241 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWD 299
+YP+IHS N + DQ+R ++IPD P+ ++ FSM GDF+EVY ++
Sbjct: 198 LVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSFQ 257
Query: 300 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS-------I 352
V TCFFIDT NI++Y++ I L DGG WINLGPLLYHF + G + S +
Sbjct: 258 VVATCFFIDTTKNILDYLDTIKNCLVDGGYWINLGPLLYHF-ESEGTSNSNSDSQQQPFV 316
Query: 353 ELSLEDVKRVALHYGXXXXXXXXXXXXXXXNPRSMMQNRYFTAFWTMR-KKS 403
EL+LE + V G + RSM++ Y +W R +KS
Sbjct: 317 ELTLEQLFYVMDSMGFEVLKHNSVDTTYMGDKRSMLEWIYHPHYWVCRLQKS 368
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| DICTYBASE|DDB_G0282239 DDB_G0282239 "N2227-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 117/299 (39%), Positives = 174/299 (58%)
Query: 110 NQSCSNDFTDSNGNASSPACDWLDPSI--QLNVPLADVDKVRCIIRNIVRDWAAEGKTER 167
N+ C N F+ S+ N+++ +DP+ + + +D+++ IR +VR+W+ EGK ER
Sbjct: 171 NEHC-NIFSQSSDNSANSE-RIVDPTNLDHIKIDYFMMDQLKSTIRQLVREWSEEGKLER 228
Query: 168 DQCYKPILEELDALFPNR--SKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225
DQ ++PI ++L ++ + + S PGAGLGRL LEI+ LGF SQG E+S+ M+I
Sbjct: 229 DQAFEPIKQQLLEIYGHIPFQERSKIRVYSPGAGLGRLCLEIASLGFSSQGIEYSFMMLI 288
Query: 226 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH-----PASAGITEGFSM 280
S+F+LN E E+ I+P+IH N L D DQLR V+IPD+ P + E FSM
Sbjct: 289 VSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALE-FSM 347
Query: 281 CGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF 340
GDF + + S +D + TCFFIDTA NI+EY++ IS+ILK GG WIN GPLLYH
Sbjct: 348 SAGDFTKNIEENS----FDCICTCFFIDTAPNILEYVDCISKILKPGGTWINFGPLLYHH 403
Query: 341 ADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXXXXXXXNPRSMMQNRYFTAFWTM 399
A ++D SIELS E ++ + N +S++++ Y F+ +
Sbjct: 404 AK---KKD--SIELSYEQLRYLICKKQFQFKKEEIRDAEYCSNQKSLLRSIYKCQFFVV 457
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| UNIPROTKB|G4MPS8 MGG_09217 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 92/228 (40%), Positives = 134/228 (58%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE----SPPA------- 192
D+DK R +R RDW+AEG+ ER+ Y P+ + L + R +E SPP+
Sbjct: 113 DIDKARSTLRQFYRDWSAEGRPEREASYGPVKQYLQHMEQVRIQEWFGPSPPSPLPSLPP 172
Query: 193 --CLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250
LVPGAGLGRL ++ LG+ +GNE SY+ ++ SS++LN A + IYPW+ S
Sbjct: 173 LKVLVPGAGLGRLVFDLCDLGYEVEGNEISYHQLLASSYVLNRAPAARQHTIYPWVQSFS 232
Query: 251 NSLSDSDQLRPVSIPDIHPASAGITE-----GFSMCGGDFVEVYSDPSQVGAWDAVVTCF 305
N S ++Q R ++PD+HPA+ T SM DF+ +Y +Q +DAV + F
Sbjct: 233 NHASRANQFRSYAVPDVHPATQLATPTKAGGSMSMSAADFLCLYEQEAQRERFDAVASVF 292
Query: 306 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL----YGQEDE 349
F+DTA N++ YIE I L+ GGV IN+GPLL+HF D +G++D+
Sbjct: 293 FLDTAPNLIRYIEAIRNCLRPGGVLINVGPLLWHFEDNAPGNHGRDDD 340
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| CGD|CAL0000364 orf19.592 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 6.5e-33, Sum P(2) = 6.5e-33
Identities = 51/146 (34%), Positives = 83/146 (56%)
Query: 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFIS 214
++R+W+ EG+ ERD + I+ EL+ L+P+ L PG GLGRL +E+ GF +
Sbjct: 107 LMREWSDEGQAERDVAFTRIISELEELYPDEPSRQSIRILNPGCGLGRLVMELVIRGFWT 166
Query: 215 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP----- 269
QGNE SY+M++ S+FILNH++ +I+P++ + + + Q R ++IPD+ P
Sbjct: 167 QGNEISYHMLLASNFILNHSQFPHSHSIFPFLSRSSHLVKRKYQTRGITIPDVAPFAVLS 226
Query: 270 ------ASAGITEGFSMCGGDFVEVY 289
S E S+ G F+E+Y
Sbjct: 227 ELKEKTPSIAYEELMSITAGSFLELY 252
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00001792001 | SubName- Full=Chromosome chr18 scaffold_122, whole genome shotgun sequence; (513 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00000534001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (338 aa) | • | • | 0.437 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 412 | |||
| pfam07942 | 268 | pfam07942, N2227, N2227-like protein | 1e-146 |
| >gnl|CDD|219653 pfam07942, N2227, N2227-like protein | Back alignment and domain information |
|---|
Score = 415 bits (1070), Expect = e-146
Identities = 159/273 (58%), Positives = 194/273 (71%), Gaps = 8/273 (2%)
Query: 134 PSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE-SPPA 192
P +NV D+ KVR +R IVRDW+AEG+ ERD YKPI+EEL+ LFP+RS + S
Sbjct: 1 PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSRSHDRSKIR 60
Query: 193 CLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252
LVPGAGLGRLA E++ LG+ QGNEFSY+M++CS+FILN+ + + IYP+IHS N
Sbjct: 61 ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ 120
Query: 253 LSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311
L+ DQLRPV IPD+HP S G FSMC GDF+EVY + + ++D VVTCFFIDTAH
Sbjct: 121 LTRDDQLRPVQIPDVHPLSELGPRGNFSMCAGDFLEVYGEDA--NSYDVVVTCFFIDTAH 178
Query: 312 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFE 371
N++EYI+ I +ILK GG WINLGPLLYHF L DEMSIELSLED+KR+A GF+ E
Sbjct: 179 NVLEYIDTIEKILKPGGHWINLGPLLYHFEPL---PDEMSIELSLEDIKRLATKRGFKDE 235
Query: 372 KEKT-IETTYTTNPRSMMQNRYFTAFWTMRKKS 403
KE+T I YTTN SMMQ Y FW RK
Sbjct: 236 KEETGILNGYTTNYESMMQGYYGCVFWVARKPP 268
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This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions. Length = 268 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 100.0 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 100.0 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.71 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.68 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.67 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.67 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.67 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.66 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.66 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.65 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.65 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.65 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.65 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.63 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.63 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.61 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.61 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.6 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.59 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.59 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.55 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.55 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.54 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.53 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.51 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.5 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.5 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.49 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.49 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.47 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.47 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.46 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.45 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.45 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.44 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.42 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.41 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.41 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.4 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.4 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.39 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.39 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.36 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.35 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.34 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.34 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.33 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.33 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.31 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.31 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.3 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.29 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.28 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.27 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.27 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.27 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.27 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.27 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.27 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.25 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.24 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.24 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.22 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.22 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.19 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.18 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.16 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.15 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.15 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.13 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.11 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.11 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.1 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.09 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.08 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.08 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.05 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.04 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.03 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.03 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.03 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.02 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.02 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.02 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.02 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.01 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.99 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.96 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.96 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.95 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.95 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.95 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.92 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.92 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.92 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.91 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.91 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.9 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.88 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.88 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.86 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.84 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.82 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.82 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.82 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.81 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.79 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.79 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.78 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.77 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.76 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.74 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.7 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.68 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.68 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.65 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.65 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.65 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.64 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.63 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.63 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.57 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.57 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.57 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.55 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.53 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| PLN02366 | 308 | spermidine synthase | 98.51 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.5 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.46 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.46 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.42 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.42 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.41 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.41 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.41 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.37 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.37 | |
| PLN02476 | 278 | O-methyltransferase | 98.36 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.33 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.3 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.3 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.28 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.28 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.27 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.26 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.26 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.24 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.21 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.21 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.21 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.2 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.19 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.17 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.17 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.17 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.16 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.14 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.12 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.12 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.12 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.1 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.08 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.05 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.02 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.01 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.99 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.99 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.98 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.95 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.95 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.95 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.94 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.93 | |
| PLN02823 | 336 | spermine synthase | 97.92 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.92 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.9 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.89 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.89 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.79 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.77 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.75 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.71 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.67 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.63 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.6 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.49 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.48 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.48 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.47 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.47 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.47 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.46 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.4 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.39 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.26 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.23 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.23 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.14 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.09 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.01 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 96.97 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.96 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.95 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.95 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.85 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.73 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.7 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.66 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.61 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.53 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.5 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.44 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.42 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.35 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.34 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.3 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.28 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 96.24 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.2 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.13 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.01 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.69 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.69 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.68 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.59 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.52 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.44 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.29 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 95.17 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 94.83 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.83 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.79 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.7 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 94.59 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 94.42 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.33 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.31 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.29 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.26 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 94.21 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 94.0 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.9 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.89 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.82 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 93.75 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 93.7 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 93.59 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.09 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.05 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.03 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 92.97 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 92.88 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 92.39 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 92.09 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 91.95 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 91.84 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 91.77 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.57 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 91.31 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 90.79 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 90.49 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 89.09 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 88.96 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 88.89 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 88.64 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 88.29 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 88.01 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 87.96 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 87.85 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 87.77 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 87.71 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 87.6 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 87.42 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 87.33 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 86.56 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 86.48 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 86.3 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 86.13 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 86.09 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 86.0 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 86.0 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 84.98 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 84.91 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 84.84 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 84.71 | |
| PLN02494 | 477 | adenosylhomocysteinase | 84.7 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 84.62 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 84.31 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 84.23 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 83.75 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 83.56 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 83.1 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 83.06 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 83.0 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 82.59 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 82.29 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 81.89 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 81.54 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 81.45 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 81.34 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 81.22 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 81.17 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 81.05 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 80.86 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 80.78 | |
| KOG2872 | 359 | consensus Uroporphyrinogen decarboxylase [Coenzyme | 80.58 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 80.47 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 80.17 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 80.1 |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-82 Score=620.28 Aligned_cols=260 Identities=55% Similarity=0.978 Sum_probs=243.5
Q ss_pred CcchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCC-CCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 015160 142 LADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLGFISQGNEFS 220 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~-~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S 220 (412)
..|++||+++|+|++||||+||+.||+++|+||+++|++++|. ...+.+.+|||||||+||||+|||++||.|+|||+|
T Consensus 8 ~~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S 87 (270)
T PF07942_consen 8 PSDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFS 87 (270)
T ss_pred hhhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEch
Confidence 7999999999999999999999999999999999999999984 334578999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC-CCCCCceeEEecccccccCCCCCCCCcc
Q 015160 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWD 299 (412)
Q Consensus 221 ~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~-~~~~~~~s~~~GDF~ely~~~~~~~~fD 299 (412)
++||++++||||++.+.++++||||+|++||+.++++|+|+++|||+.|.. .....+|+|++|||+++|..+...++||
T Consensus 88 ~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d 167 (270)
T PF07942_consen 88 YFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFD 167 (270)
T ss_pred HHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCccc
Confidence 999999999999999999999999999999999999999999999999976 4566789999999999998544468999
Q ss_pred EEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee-ccc
Q 015160 300 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT-IET 378 (412)
Q Consensus 300 ~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~-i~s 378 (412)
+||||||||||+||++||++|+++|||||+|||+|||+|||++. +..++.++|||+|||+++++++||++++++. +.+
T Consensus 168 ~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~-~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i~~ 246 (270)
T PF07942_consen 168 VVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM-SIPNEMSVELSLEEIKELIEKLGFEIEKEESSILS 246 (270)
T ss_pred EEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC-CCCCCcccCCCHHHHHHHHHHCCCEEEEEEEeeec
Confidence 99999999999999999999999999999999999999999874 2234568999999999999999999999875 999
Q ss_pred cCCCCcccccccccceEEEEEEEc
Q 015160 379 TYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 379 ~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
+|++|++||+|+.|+|+||||||+
T Consensus 247 ~Y~~d~~Sm~q~~Y~~~~fvark~ 270 (270)
T PF07942_consen 247 GYTTDPESMMQTYYGCVFFVARKP 270 (270)
T ss_pred CCCCCHHHHhhCccccEEEEEEcC
Confidence 999999999999999999999996
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-81 Score=613.91 Aligned_cols=295 Identities=57% Similarity=0.965 Sum_probs=270.6
Q ss_pred cccchhHHhhhccccccccCCCCCCCCCCCCCC-cCCCCCCcchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhh
Q 015160 103 LENREETNQSCSNDFTDSNGNASSPACDWLDPS-IQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDAL 181 (412)
Q Consensus 103 ~~~n~~~~~~~~~~~~~~~g~~~~~~~~w~~~~-~~~~~~~~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~ 181 (412)
|+-|..+...++.... +.-.+|..-+ ...++.+.+|.||.|+|+|++||||+||..||+++|.||+++|..+
T Consensus 69 I~~N~~v~r~Ia~~~~-------~~f~ed~~~~~~~~~~n~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~l 141 (369)
T KOG2798|consen 69 IEENSRVIRAIAEECP-------FEFTEDHDQKGELAQVNPDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNSL 141 (369)
T ss_pred HHhhhHHHHHHHhhCc-------cccchhhhcccceecCCHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHhh
Confidence 7788888887777222 2233455555 6677888999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcc
Q 015160 182 FPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (412)
Q Consensus 182 ~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr 260 (412)
+|... .+.+.+||+||||+||||++||..||.+|||||||+||++|.||||.++.+++++||||||++||+++++||+|
T Consensus 142 fp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlr 221 (369)
T KOG2798|consen 142 FPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLR 221 (369)
T ss_pred CCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccc
Confidence 98643 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC-CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 261 PVSIPDIHPA-SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 261 ~v~iPDv~p~-~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
+++|||+.|. .....+.|+|++|||+++|..+...+.||+||||||||||+|+++||++|+++|||||+|||+|||+||
T Consensus 222 pi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYH 301 (369)
T KOG2798|consen 222 PISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYH 301 (369)
T ss_pred cccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeee
Confidence 9999999997 456667899999999999987666778999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 404 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~~ 404 (412)
|++..|..+++++|||.|+|.++++..||++++++.|+++|+.||+||++..|.|.|||+||+..
T Consensus 302 F~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~nprsm~~~~Y~~~yw~~rk~~~ 366 (369)
T KOG2798|consen 302 FEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTNPRSMMENRYQCHYWVLRKPCA 366 (369)
T ss_pred ccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeeecccCCCHHHHhhhcccceeEEEecccc
Confidence 99987766788999999999999999999999999999999999999999999999999999864
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=148.91 Aligned_cols=137 Identities=19% Similarity=0.212 Sum_probs=96.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-..... .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~--------------------------~~------ 77 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE--------------------------NL------ 77 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC------
Confidence 4568999999999999999999999999999999997766332110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
.++.+..+|+.++.. .++||+|++.+.+. ...++..+++.++++|||||++|-+..+ ...+. ..
T Consensus 78 -------~~v~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~--~~~~~-~~ 143 (197)
T PRK11207 78 -------DNLHTAVVDLNNLTF----DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM--DTADY-PC 143 (197)
T ss_pred -------CcceEEecChhhCCc----CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe--cCCCC-CC
Confidence 124566678766422 36799999775332 2346889999999999999997542211 11110 00
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.....+.++.+|+.++++ ||+++.-
T Consensus 144 ~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 144 TVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 111246789999999996 9999884
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=149.04 Aligned_cols=151 Identities=22% Similarity=0.301 Sum_probs=96.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||||||.|..+..||.+||+|+|+|+|...+..+. -.+. +.|=+. . .....
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~--~e~~-------~~~~~~------~----~~~~~----- 92 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF--EENN-------LEPTVT------S----VGGFK----- 92 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH--HHCT-------TEEECT------T----CTTEE-----
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH--HHhc-------cCCCcc------c----cccee-----
Confidence 4569999999999999999999999999999998875431 1000 000000 0 00000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCC-hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDT-AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDt-a~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
.....++.+.+|||+++.. ...++||+|.-+ ||+-. .....+|.+.+.++|||||.++-+. +.|..... .+
T Consensus 93 ---~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~-l~~~~~~~-~G 165 (218)
T PF05724_consen 93 ---RYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT-LEYPQGEM-EG 165 (218)
T ss_dssp ---EETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE-EES-CSCS-SS
T ss_pred ---eecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE-EEcCCcCC-CC
Confidence 0112458999999999764 234689999965 33322 3447799999999999999954321 33432222 12
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+ ++.++.+||++++. .+|+++...
T Consensus 166 P---Pf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 166 P---PFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp S---S----HHHHHHHHT-TTEEEEEEE
T ss_pred c---CCCCCHHHHHHHhc-CCcEEEEEe
Confidence 2 57899999999997 699998854
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-16 Score=135.67 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=96.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||.|.++..|++.|+.|+|+|+|..|+.. .+ +.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~-----------------------------~~----- 63 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RN-----------------------------VV----- 63 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TT-----------------------------SE-----
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hh-----------------------------hh-----
Confidence 67799999999999999999999999999999999743 00 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh-----hhhc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH-----FADL 343 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh-----~~~~ 343 (412)
....... +... ..++||+|+++..|...+|...+|+.|+++|||||+++-.-|..+. +...
T Consensus 64 ---------~~~~~~~--~~~~---~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 129 (161)
T PF13489_consen 64 ---------FDNFDAQ--DPPF---PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW 129 (161)
T ss_dssp ---------EEEEECH--THHC---HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC
T ss_pred ---------hhhhhhh--hhhc---cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc
Confidence 1111111 1111 2579999999988888889999999999999999999975554321 1110
Q ss_pred cCCCC--CcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 344 YGQED--EMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 344 ~g~~~--~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
....+ .....++.++++.+++++||++++|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 130 RYDRPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp CGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred CCcCccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 00010 1234689999999999999999875
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=143.87 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..|+ +
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-------~------------------------------ 71 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-------E------------------------------ 71 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-------h------------------------------
Confidence 5679999999999999999998 789999999999986543 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc-----chh--
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL-----LYH-- 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL-----lyh-- 339 (412)
.++.+..+|+.++.. .++||+|++.+.+...++....++.++++|||||+++-..|. .+.
T Consensus 72 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 138 (255)
T PRK14103 72 ---------RGVDARTGDVRDWKP----KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV 138 (255)
T ss_pred ---------cCCcEEEcChhhCCC----CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH
Confidence 014567788877632 478999999887766667889999999999999999742111 110
Q ss_pred --------hhhccCCCC--CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 340 --------FADLYGQED--EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 340 --------~~~~~g~~~--~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
|.......+ ......+.+++..+++++||++..
T Consensus 139 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 139 RALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred HHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 000000000 012246899999999999998654
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-15 Score=142.68 Aligned_cols=194 Identities=17% Similarity=0.115 Sum_probs=122.9
Q ss_pred CCCCcchHHHHHHHHHHHhcCcccChhHHhh----chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--
Q 015160 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQ----CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-- 211 (412)
Q Consensus 139 ~~~~~d~~kv~s~L~q~~RDWS~eG~~ER~~----~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-- 211 (412)
+....|+-++.+.++.+...++.....-.+. ....|-..+.+.... .++.+|||+|||+|+++..|+++ |
T Consensus 22 ~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~ 98 (261)
T PLN02233 22 RSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSD 98 (261)
T ss_pred hhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCC
Confidence 3445777666666665555555433321111 112233333333321 25679999999999999999986 4
Q ss_pred CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC
Q 015160 212 FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD 291 (412)
Q Consensus 212 f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~ 291 (412)
..|+|+|+|..||..|+-..+.... ....++.++.+|+.++.
T Consensus 99 ~~V~gvD~S~~ml~~A~~r~~~~~~------------------------------------~~~~~i~~~~~d~~~lp-- 140 (261)
T PLN02233 99 GKVMGLDFSSEQLAVAASRQELKAK------------------------------------SCYKNIEWIEGDATDLP-- 140 (261)
T ss_pred CEEEEEECCHHHHHHHHHHhhhhhh------------------------------------ccCCCeEEEEcccccCC--
Confidence 3899999999999766511100000 00124788999988763
Q ss_pred CCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE--ecC-------cchhhhhc---------cCCCCC----
Q 015160 292 PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGP-------LLYHFADL---------YGQEDE---- 349 (412)
Q Consensus 292 ~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GP-------Llyh~~~~---------~g~~~~---- 349 (412)
..+++||+|++.+-+...+|...++++++++|||||.++- +++ .++.+... ++..+.
T Consensus 141 -~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 141 -FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred -CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 3467999999888777777899999999999999999864 221 11111000 011000
Q ss_pred ---cccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 350 ---MSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 350 ---~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..-.++.+|+.++++++||+.++..
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 0124699999999999999988754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=142.49 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=105.6
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
...+.+.+++.+... .++.+|||||||.||.+..||++|+.|+|+|+|..++..+. .. +... +
T Consensus 21 ~p~~~L~~~~~~~~~----~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~--~~-----~~l~--~---- 83 (218)
T PRK13255 21 EVNPLLQKYWPALAL----PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF--AE-----NGLT--P---- 83 (218)
T ss_pred CCCHHHHHHHHhhCC----CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH--HH-----cCCC--c----
Confidence 345566666655322 14569999999999999999999999999999999885321 11 0000 0
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCC-hhhHHHHHHHHHHhccC
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDT-AHNIVEYIEIISRILKD 326 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDt-a~Ni~~yl~~I~~~LKP 326 (412)
...+..........++.+.++|+.++.. ...+.||+|+-. +|+.. .+...+|++.|.++|||
T Consensus 84 --------------~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 84 --------------QTRQSGEFEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPA 147 (218)
T ss_pred --------------cccccccccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC
Confidence 0000000000112358899999998743 223689999854 23333 33467899999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
||+++-++ +.|. .+..+++ ++.++.+||++++.. +|+|+....
T Consensus 148 gG~~~l~~-~~~~-~~~~~gP---p~~~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 148 GCRGLLVT-LDYP-QEELAGP---PFSVSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCeEEEEE-EEeC-CccCCCC---CCCCCHHHHHHHhcC-CceEEEeee
Confidence 98654211 1111 1112223 367999999999953 488887553
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-15 Score=141.33 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=97.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||||||.||.+..||++|+.|+|+|+|..++..+. +. +... ....++ .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~---~~----~~~~------------~~~~~~-----~~~- 88 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF---AE----NGLT------------PTVTQQ-----GEF- 88 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH---HH----cCCC------------cceecc-----ccc-
Confidence 4569999999999999999999999999999999986432 10 0000 000000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChh-hHHHHHHHHHHhccCCcEEEEecCcchhhhh-ccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAH-NIVEYIEIISRILKDGGVWINLGPLLYHFAD-LYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~-Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~-~~g 345 (412)
+.....++.+.++||.++.. ...+.||+|+-+- |+...+ ....|++.|.++|||||+++-++ +.+.. ..+
T Consensus 89 --~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~---~~~~~~~~~ 161 (213)
T TIGR03840 89 --TRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT---LDYDQSEMA 161 (213)
T ss_pred --eeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE---EEcCCCCCC
Confidence 00012348899999998643 1236799998653 333333 35679999999999999765321 11111 112
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++ .+.++.+||++++.. +|+++...
T Consensus 162 gp---p~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 162 GP---PFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred Cc---CCCCCHHHHHHHhcC-CceEEEEe
Confidence 22 467999999999964 67777644
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-15 Score=143.26 Aligned_cols=178 Identities=21% Similarity=0.233 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHhcCcc-----cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEE
Q 015160 145 VDKVRCIIRNIVRDWAA-----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGN 217 (412)
Q Consensus 145 ~~kv~s~L~q~~RDWS~-----eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~Gn 217 (412)
..+|......++.-+.- .....| .|-+.+.+..... ++.+|||+|||||.+|..+|+.. ..|+|+
T Consensus 10 ~~~v~~vF~~ia~~YD~~n~~~S~g~~~-----~Wr~~~i~~~~~~---~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~ 81 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLMNDLMSFGLHR-----LWRRALISLLGIK---PGDKVLDVACGTGDMALLLAKSVGTGEVVGL 81 (238)
T ss_pred HHHHHHHHHhhHHHHHhhcccccCcchH-----HHHHHHHHhhCCC---CCCEEEEecCCccHHHHHHHHhcCCceEEEE
Confidence 35666666666553332 122223 3666666655322 67899999999999999999996 789999
Q ss_pred eCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCC
Q 015160 218 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGA 297 (412)
Q Consensus 218 D~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~ 297 (412)
|+|..||..++-.+ . +.. ..+++|+.||+.++. +.+++
T Consensus 82 D~s~~ML~~a~~k~---~------------------------------~~~------~~~i~fv~~dAe~LP---f~D~s 119 (238)
T COG2226 82 DISESMLEVAREKL---K------------------------------KKG------VQNVEFVVGDAENLP---FPDNS 119 (238)
T ss_pred ECCHHHHHHHHHHh---h------------------------------ccC------ccceEEEEechhhCC---CCCCc
Confidence 99999998776211 0 000 112889999999874 46899
Q ss_pred ccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-------cCc--chh---hhhc---cCC----CCC--------c
Q 015160 298 WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-------GPL--LYH---FADL---YGQ----EDE--------M 350 (412)
Q Consensus 298 fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~-------GPL--lyh---~~~~---~g~----~~~--------~ 350 (412)
||+|...|=|....|+..+|++++|+|||||.++.+ +++ .|+ +... .|. ..+ .
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi 199 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESI 199 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHH
Confidence 999988898998889999999999999999988742 121 011 1100 110 010 1
Q ss_pred ccCCCHHHHHHHHHhCCCEEEE
Q 015160 351 SIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 351 ~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.-.++.+++++.++++||+.+.
T Consensus 200 ~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 200 RRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred HhCCCHHHHHHHHHhcCceEEe
Confidence 2246999999999999999887
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=143.41 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=109.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..||++|+.|+|+|+|..|+..|+-.+.. .
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~---~------------------------------- 89 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEA---K------------------------------- 89 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---c-------------------------------
Confidence 456999999999999999999999999999999999877632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe----cCcch------
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPLLY------ 338 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~----GPLly------ 338 (412)
....++.++.+|+.++.. ...++||+|++...+....+...+++.++++|||||+++-. ..+.+
T Consensus 90 ----g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~ 163 (255)
T PRK11036 90 ----GVSDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG 163 (255)
T ss_pred ----CCccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc
Confidence 011236788899877632 22578999998776665566789999999999999999732 11111
Q ss_pred --hhhhc-cC----CCCCcccCCCHHHHHHHHHhCCCEEEEEeecc--ccCCCCc
Q 015160 339 --HFADL-YG----QEDEMSIELSLEDVKRVALHYGFEFEKEKTIE--TTYTTNP 384 (412)
Q Consensus 339 --h~~~~-~g----~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~--s~Y~~d~ 384 (412)
++... .. ........++.+++.++++++||+++....+. ..|..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~~ 218 (255)
T PRK11036 164 NFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRNK 218 (255)
T ss_pred ChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCcc
Confidence 11000 00 00001245799999999999999999866443 4555553
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=145.63 Aligned_cols=144 Identities=14% Similarity=0.122 Sum_probs=105.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||+.|+.|+|+|+|..|+..|+.... ..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~---~~------------------------------- 176 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHAD---MD------------------------------- 176 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hc-------------------------------
Confidence 45699999999999999999999999999999999987762110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC--cc--hhhh---
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--LL--YHFA--- 341 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP--Ll--yh~~--- 341 (412)
....++.++.+|+.++.. ..++||+|++...|....+...+++.++++|||||.+|-..+ -. |...
T Consensus 177 ----~~~~~i~~~~~dae~l~~---~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~ 249 (322)
T PLN02396 177 ----PVTSTIEYLCTTAEKLAD---EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVG 249 (322)
T ss_pred ----CcccceeEEecCHHHhhh---ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhh
Confidence 001237788899877632 357899999988777777888999999999999999984211 10 1000
Q ss_pred ----h--c-cCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 342 ----D--L-YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 342 ----~--~-~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
. . .|... -.-.++.+|+.+++++.||++++..
T Consensus 250 ~eyi~~~lp~gth~-~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 250 AEYILRWLPKGTHQ-WSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HHHHHhcCCCCCcC-ccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 0 0 01110 1124799999999999999999865
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=139.45 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=92.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++.... .. .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~---~~-----------------------~~------ 77 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKA---RE-----------------------NL------ 77 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH---Hh-----------------------CC------
Confidence 34689999999999999999999999999999999976653221 00 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
++....+|+..... .++||+|++.+.+. ...++..+++.++++|||||+++-+ .|...+....
T Consensus 78 --------~v~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~---~~~~~~~~~~ 142 (195)
T TIGR00477 78 --------PLRTDAYDINAAAL----NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV---AAMDTADYPC 142 (195)
T ss_pred --------CceeEeccchhccc----cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE---EecccCCCCC
Confidence 03345556543221 35799999875332 2346789999999999999985431 1211111011
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+...+.++.+||++++. +|+++...
T Consensus 143 ~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 143 HMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 122356799999999995 69998843
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-15 Score=140.89 Aligned_cols=163 Identities=11% Similarity=0.086 Sum_probs=105.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+.+.+++.+..+ .++.+|||||||.|+.+..||.+||+|+|+|+|...+..+. - +..+.|=+..
T Consensus 30 p~L~~~~~~l~~----~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~--~-------e~~~~~~~~~--- 93 (226)
T PRK13256 30 EFLVKHFSKLNI----NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFF--S-------QNTINYEVIH--- 93 (226)
T ss_pred HHHHHHHHhcCC----CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHH--H-------HcCCCcceec---
Confidence 344466655432 14579999999999999999999999999999998875432 1 0111110000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChh-hHHHHHHHHHHhccCCcE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAH-NIVEYIEIISRILKDGGV 329 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta~-Ni~~yl~~I~~~LKPGG~ 329 (412)
.+.. ......++.+.+|||+++...+...+.||+|+-+ +|+...+ -..+|++.+.++|+|||.
T Consensus 94 -------~~~~--------~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 94 -------GNDY--------KLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred -------cccc--------ceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 0000 0011234899999999974311224689998854 3443333 367899999999999999
Q ss_pred EEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 330 wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
++-+ .+.+....+++ ++.++.+||++++.. +|+++.
T Consensus 159 llll---~~~~~~~~~GP---Pf~v~~~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 159 ILLL---VMEHDKKSQTP---PYSVTQAELIKNFSA-KIKFEL 194 (226)
T ss_pred EEEE---EEecCCCCCCC---CCcCCHHHHHHhccC-CceEEE
Confidence 9863 23332222333 477999999999965 566554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=138.08 Aligned_cols=174 Identities=11% Similarity=0.118 Sum_probs=117.8
Q ss_pred chHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHH
Q 015160 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 144 d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~M 223 (412)
|..+|+......+..|..... ....+.+.|.+.++.. +..+|||+|||+|.++..|+++|..|+|+|+|..|
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~-----~q~~~a~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~ 76 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAE-----LQRQSADALLAMLPQR---KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPM 76 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHhcCcc---CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHH
Confidence 345566555555555653322 2334666666666532 45789999999999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE
Q 015160 224 MICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 303 (412)
Q Consensus 224 L~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT 303 (412)
+..++... + ...++.+|+.++. ...++||+|++
T Consensus 77 l~~a~~~~---------------------------------~-----------~~~~~~~d~~~~~---~~~~~fD~V~s 109 (251)
T PRK10258 77 LAQARQKD---------------------------------A-----------ADHYLAGDIESLP---LATATFDLAWS 109 (251)
T ss_pred HHHHHhhC---------------------------------C-----------CCCEEEcCcccCc---CCCCcEEEEEE
Confidence 86554110 0 0245778877653 23578999999
Q ss_pred ecccCChhhHHHHHHHHHHhccCCcEEEEe--cCcchh-hhhc---cCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 304 CFFIDTAHNIVEYIEIISRILKDGGVWINL--GPLLYH-FADL---YGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 304 ~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~--GPLlyh-~~~~---~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.+.+....++...|.+++++|||||+++-. ++-... +... .+..+...-.++.+++..++...||+...
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 887776778889999999999999999853 331111 1110 01111112247999999999988887644
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-15 Score=144.96 Aligned_cols=143 Identities=24% Similarity=0.261 Sum_probs=75.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||||.++..|+++ | ..|+|+|+|..||..|+..+...
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------------------------------- 95 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------------------------------- 95 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-------------------------------
Confidence 5679999999999999999986 3 58999999999998777332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe------cCcc--
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL------GPLL-- 337 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~------GPLl-- 337 (412)
...++.+++||..++.. .+++||+|++.|-|...+|..+.|++++|+|||||+++-+ .|++
T Consensus 96 --------~~~~i~~v~~da~~lp~---~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 96 --------GLQNIEFVQGDAEDLPF---PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp --------T--SEEEEE-BTTB--S----TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred --------CCCCeeEEEcCHHHhcC---CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 01147899999988743 4799999998888888888999999999999999999732 1111
Q ss_pred -hhhhhc-----cC----CC-CC-----ccc--CCCHHHHHHHHHhCCCEEEEE
Q 015160 338 -YHFADL-----YG----QE-DE-----MSI--ELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 338 -yh~~~~-----~g----~~-~~-----~~i--eLS~EEL~~ll~~~GFeii~e 373 (412)
|.+.-. .| .. .. .++ ..+.+|+.++++++||+.++-
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp HHHH--------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111000 01 00 00 022 248899999999999997763
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-15 Score=123.02 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=78.5
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++.+|++ .|.+|+|+|+|+.|+..++-.... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~----------------------------- 48 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---E----------------------------- 48 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH---T-----------------------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh---c-----------------------------
Confidence 356999999999999999999 899999999999999877633200 0
Q ss_pred CCCCCCCCCCceeEEeccc-ccccCCCCCCCCccEEEEec-ccC---ChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCF-FID---TAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF-~ely~~~~~~~~fD~VvT~F-FID---ta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|+ .+.. ..+.||+|+... .++ ..++..++++.+++.|||||++|-
T Consensus 49 ------~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 49 ------GLSDRITFVQGDAEFDPD----FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp ------TTTTTEEEEESCCHGGTT----TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCCCCeEEEECccccCcc----cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 1124589999999 3332 246799999877 222 115678899999999999999983
|
... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=141.01 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=94.6
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-... .. .+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~---~~-----------------------~l------- 167 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAE---KE-----------------------NL------- 167 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---Hc-----------------------CC-------
Confidence 3489999999999999999999999999999999976652221 00 00
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
++.+..+|+.+... .++||+|++.+ |++ .+++..+++.++++|||||+++-+.+.- .+....
T Consensus 168 -------~v~~~~~D~~~~~~----~~~fD~I~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~---~~~~~~ 232 (287)
T PRK12335 168 -------NIRTGLYDINSASI----QEEYDFILSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCAMD---TEDYPC 232 (287)
T ss_pred -------ceEEEEechhcccc----cCCccEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEecc---cccCCC
Confidence 24566677665322 47899999765 344 3568899999999999999966432221 111111
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
++.....++.+||++++. +|++++-
T Consensus 233 ~~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 233 PMPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCCCCcccCHHHHHHHhC--CCEEEEE
Confidence 112245689999999995 5999873
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=129.18 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 015160 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (412)
Q Consensus 145 ~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~ 221 (412)
..+|+....+++..|-.-....--..+..+.+.+.+.+.. .++.+|||+|||+|.++..|++. +..|+|+|+|.
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 3566666777766665411100000011222333333332 24679999999999999999976 35899999999
Q ss_pred HHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEE
Q 015160 222 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAV 301 (412)
Q Consensus 222 ~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~V 301 (412)
.|+..++-.+... . ..++.++.+|+.++.. ..++||+|
T Consensus 81 ~~~~~a~~~~~~~----------------------------~-----------~~~v~~~~~d~~~~~~---~~~~fD~V 118 (231)
T TIGR02752 81 NMLSVGRQKVKDA----------------------------G-----------LHNVELVHGNAMELPF---DDNSFDYV 118 (231)
T ss_pred HHHHHHHHHHHhc----------------------------C-----------CCceEEEEechhcCCC---CCCCccEE
Confidence 9997665322100 0 0136788889877532 35789999
Q ss_pred EEecccCChhhHHHHHHHHHHhccCCcEEEEe--c-Ccchhhhh-----------c----cCCC--------CCcccCCC
Q 015160 302 VTCFFIDTAHNIVEYIEIISRILKDGGVWINL--G-PLLYHFAD-----------L----YGQE--------DEMSIELS 355 (412)
Q Consensus 302 vT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~--G-PLlyh~~~-----------~----~g~~--------~~~~ieLS 355 (412)
++.+.+...++..+.++++.++|||||+++-. + |-...+.. . .+.. +...-..+
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPG 198 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCC
Confidence 98887777778889999999999999999842 1 11100000 0 0000 00011358
Q ss_pred HHHHHHHHHhCCCEEEEEe
Q 015160 356 LEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 356 ~EEL~~ll~~~GFeii~e~ 374 (412)
.+|++++++++||++++..
T Consensus 199 ~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 199 MDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred HHHHHHHHHHcCCCeeEEE
Confidence 8999999999999988754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-14 Score=142.79 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=99.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.+|||+|||+|+++..++..|. .|+|+|.|..|+..++.+.+..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~--------------------------------- 168 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL--------------------------------- 168 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc---------------------------------
Confidence 457999999999999999999997 4999999999986444221100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC--------cchh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--------LLYH 339 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP--------Llyh 339 (412)
....++.+..+|+.++.. .+.||+|++.-.|....+...+|+.++++|||||.+|--.. .++.
T Consensus 169 -----~~~~~i~~~~~d~e~lp~----~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p 239 (322)
T PRK15068 169 -----GNDQRAHLLPLGIEQLPA----LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP 239 (322)
T ss_pred -----CCCCCeEEEeCCHHHCCC----cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc
Confidence 001136788888877632 57899999875555556788999999999999999984210 0111
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+.+..-+...+..|.+++..+++++||++++..
T Consensus 240 -~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 240 -GDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred -hhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 0001111111223599999999999999998754
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=142.51 Aligned_cols=145 Identities=15% Similarity=0.126 Sum_probs=102.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++......
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------------------------------- 164 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------------------------------- 164 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999997 899999999999997666332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhh---c-
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFAD---L- 343 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~---~- 343 (412)
....++.+..+|+.++. ...++||+|++..-+....+..+++++++++|||||.++-.....-.... .
T Consensus 165 -----g~~~~v~~~~~D~~~~~---~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l 236 (340)
T PLN02244 165 -----GLSDKVSFQVADALNQP---FEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSL 236 (340)
T ss_pred -----CCCCceEEEEcCcccCC---CCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccC
Confidence 01123788999988753 23689999998876666677889999999999999999853211000000 0
Q ss_pred -------c---CCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 344 -------Y---GQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 344 -------~---g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
. ...-...-..+.+++..+++++||+.++..
T Consensus 237 ~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 237 KPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 0 000000112489999999999999988743
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=113.56 Aligned_cols=93 Identities=26% Similarity=0.317 Sum_probs=73.3
Q ss_pred EEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCC
Q 015160 194 LVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASA 272 (412)
Q Consensus 194 LvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~ 272 (412)
||+|||+|+.+..|+++ +..|+|+|+|..|+..++-...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---------------------------------------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---------------------------------------- 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT----------------------------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc----------------------------------------
Confidence 89999999999999999 8999999999999976652211
Q ss_pred CCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 273 GITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 273 ~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..+.++..+|+.++. ..+++||+|+++..+...++...++++++|+|||||+++
T Consensus 41 --~~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 41 --NEGVSFRQGDAEDLP---FPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --TSTEEEEESBTTSSS---S-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCchheeehHHhCc---cccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 112457888988873 357899999988765544889999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=131.12 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=99.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..|+++ +..|+|+|+|..|+..++..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------- 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------- 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 5679999999999999999987 578999999999996554110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcch---h---h
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY---H---F 340 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLly---h---~ 340 (412)
.++.+..+|+.++.. .++||+|++.+.++...+...+++.++++|||||+++-..|-.+ . .
T Consensus 76 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 142 (258)
T PRK01683 76 ---------PDCQFVEADIASWQP----PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLM 142 (258)
T ss_pred ---------CCCeEEECchhccCC----CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHH
Confidence 014567788876532 36899999988777667788999999999999999986333211 0 1
Q ss_pred ---------hhccCCCC-CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 341 ---------ADLYGQED-EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 341 ---------~~~~g~~~-~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
...++... ......+.+++..++.+.||.+....
T Consensus 143 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 186 (258)
T PRK01683 143 REVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDIWH 186 (258)
T ss_pred HHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCceeeee
Confidence 00000000 01234688899999999999875543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=129.89 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=88.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.++||+|||.||.+..||++||.|+|+|.|...|...+-+.+. . .+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~----~----------------------~l------ 77 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE----E----------------------GL------ 77 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh----c----------------------Cc------
Confidence 567999999999999999999999999999999998654433211 0 11
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
.++....|+.+... .+.||+|++. .||+. +.+...++.|...|||||+.+-.... ..++++
T Consensus 78 --------~i~~~~~Dl~~~~~----~~~yD~I~st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~~~~---~~~d~p 141 (192)
T PF03848_consen 78 --------DIRTRVADLNDFDF----PEEYDFIVSTVVFMFLQR-ELRPQIIENMKAATKPGGYNLIVTFM---ETPDYP 141 (192)
T ss_dssp --------TEEEEE-BGCCBS-----TTTEEEEEEESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEEEEB-----SSS-
T ss_pred --------eeEEEEecchhccc----cCCcCEEEEEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEEEec---ccCCCC
Confidence 15667778776532 3689999863 36774 45888999999999999998742211 111122
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.+....+.+...||+... .||+|++
T Consensus 142 ~~~~~~f~~~~~EL~~~y--~dW~il~ 166 (192)
T PF03848_consen 142 CPSPFPFLLKPGELREYY--ADWEILK 166 (192)
T ss_dssp -SS--S--B-TTHHHHHT--TTSEEEE
T ss_pred CCCCCCcccCHHHHHHHh--CCCeEEE
Confidence 122235668889999999 4799988
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=138.69 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=98.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..++..|. .|+|+|.|..|+..++.+.+....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~------------------------------- 169 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN------------------------------- 169 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------------------------------
Confidence 567999999999999999999997 599999999998654322211000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-----cCc---chh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-----GPL---LYH 339 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~-----GPL---lyh 339 (412)
..++.+..+++.++.. .++||+|++...+....++.++|++++++|||||.+|-- |+. +..
T Consensus 170 -------~~~v~~~~~~ie~lp~----~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p 238 (314)
T TIGR00452 170 -------DKRAILEPLGIEQLHE----LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP 238 (314)
T ss_pred -------CCCeEEEECCHHHCCC----CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc
Confidence 0124556667666532 358999998866655677889999999999999999841 211 000
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
. ..+.......+-.|.++++.+++++||+.++..
T Consensus 239 ~-~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 239 K-DRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred h-HHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 000000111234599999999999999998743
|
Known examples to date are restricted to the proteobacteria. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=126.26 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=100.7
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+|||+|||+|.++..+|+. +..|+|+|+|..|+..++-.+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----------------------------------- 46 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----------------------------------- 46 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 7999999999999999987 478999999999987665222100
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 349 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~ 349 (412)
....++++..+|+.+... .++||+|++...+....+...+|+.++++|||||+++-..+..-.+... +....
T Consensus 47 ---gl~~~i~~~~~d~~~~~~----~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~ 118 (224)
T smart00828 47 ---GLQGRIRIFYRDSAKDPF----PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-EHEET 118 (224)
T ss_pred ---CCCcceEEEecccccCCC----CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-ccccc
Confidence 011236788888765421 3589999988766666678899999999999999998644321001110 00111
Q ss_pred cccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 350 MSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 350 ~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..+.++.+++.+++.+.||++++...
T Consensus 119 ~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 119 TSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred ccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 13467999999999999999988553
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-13 Score=126.30 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=97.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
++.+|||+|||+|.++..|+++ +..|+|+|+|..||..|+..++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~------------------------------ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 4568999999999999999985 568999999999998776332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcc-----
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLL----- 337 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN~GPLl----- 337 (412)
....++.++.+|+.++.. ..+|+|++.+-+.. ..+...+++.++++|||||+++...+..
T Consensus 103 --------~~~~~v~~~~~d~~~~~~-----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~ 169 (239)
T TIGR00740 103 --------HSEIPVEILCNDIRHVEI-----KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK 169 (239)
T ss_pred --------CCCCCeEEEECChhhCCC-----CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh
Confidence 001236789999987642 35898887664332 2457899999999999999999653321
Q ss_pred -----hh----hhhccCCCC-----------CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 338 -----YH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 338 -----yh----~~~~~g~~~-----------~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.. +....|..+ .....+|.+|++++++++||+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 170 INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 10 100001100 012357999999999999998654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=131.17 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=127.2
Q ss_pred HHHHHHHhcCcccChhHHhhch-HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 150 CIIRNIVRDWAAEGKTERDQCY-KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 150 s~L~q~~RDWS~eG~~ER~~~y-~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+.|++.. |..+|+-..--.. +--++++.+.....-...+.+|||.|||-|-|+.-+|+.|+.|+|+|+|+.|+-.|+
T Consensus 21 ~~la~~w--wd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak 98 (243)
T COG2227 21 EALASRW--WDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK 98 (243)
T ss_pred HHHHhhh--cCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH
Confidence 3566555 4444443332111 122344444443211136889999999999999999999999999999999998776
Q ss_pred hhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID 308 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID 308 (412)
+ ++.+. ++. +.+.++...++-. ..++||+|++.=.|.
T Consensus 99 --~-ha~e~-----------------------gv~--------------i~y~~~~~edl~~---~~~~FDvV~cmEVlE 135 (243)
T COG2227 99 --L-HALES-----------------------GVN--------------IDYRQATVEDLAS---AGGQFDVVTCMEVLE 135 (243)
T ss_pred --H-hhhhc-----------------------ccc--------------ccchhhhHHHHHh---cCCCccEEEEhhHHH
Confidence 1 11110 111 3355555555543 237999998888898
Q ss_pred ChhhHHHHHHHHHHhccCCcEEEEec----Ccchhhhhc---------cCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 309 TAHNIVEYIEIISRILKDGGVWINLG----PLLYHFADL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 309 ta~Ni~~yl~~I~~~LKPGG~wIN~G----PLlyh~~~~---------~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..+|...+++...++|||||+.+--. +.-|-..-. +.+.-...-.+-.+|+...+...||++.....
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g 215 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKG 215 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecc
Confidence 88899999999999999999997322 221211110 11111112346789999999999999987542
Q ss_pred c-cccCCCCcccccccccceEEEEEEEc
Q 015160 376 I-ETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 376 i-~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
. ..++. +.-. +...+.+.|+++.++
T Consensus 216 ~~y~p~~-~~~~-l~~~~~vNy~~~~~~ 241 (243)
T COG2227 216 LTYNPLT-NSWK-LSNDVSVNYMVHAQR 241 (243)
T ss_pred eEecccc-ceEE-ecCCccceEEEEeec
Confidence 1 11111 1111 223567777766554
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=130.84 Aligned_cols=142 Identities=12% Similarity=0.103 Sum_probs=98.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..++-...
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~----------------------------------- 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS----------------------------------- 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC-----------------------------------
Confidence 5679999999999999999875 7899999999999976651110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC-hhhHHHHHHHHHHhccCCcEEEEecCcchh---hhh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-AHNIVEYIEIISRILKDGGVWINLGPLLYH---FAD 342 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt-a~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh---~~~ 342 (412)
...++.+..+|+.+.. ...++||+|++.. ++.. ..+...+|+.++++|||||+++-..+..-. +..
T Consensus 97 ------~~~~i~~~~~D~~~~~---~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~ 167 (263)
T PTZ00098 97 ------DKNKIEFEANDILKKD---FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE 167 (263)
T ss_pred ------cCCceEEEECCcccCC---CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH
Confidence 0013678889987642 2357999999853 3332 247889999999999999999854322100 000
Q ss_pred ccC--CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 343 LYG--QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~~g--~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
... ......-.++.+++.++++++||+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 168 EFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 000 00001123689999999999999988754
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-13 Score=127.51 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
++.+|||+|||+|.++..|++ .+..|+|+|+|..|+..|+-.+...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------------------ 105 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 105 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 456899999999999998887 3679999999999998776332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEEe--------
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINL-------- 333 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wIN~-------- 333 (412)
....++.++.+|+.++.. +.+|+|+.++ |++ ..+...++++|+++|||||.++..
T Consensus 106 --------~~~~~v~~~~~d~~~~~~-----~~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~ 171 (247)
T PRK15451 106 --------KAPTPVDVIEGDIRDIAI-----ENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFEDA 171 (247)
T ss_pred --------CCCCCeEEEeCChhhCCC-----CCCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCCCcc
Confidence 001237889999887532 4589988765 454 234678999999999999999863
Q ss_pred --cCcchh----hhhccCCCC-----------CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 334 --GPLLYH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 334 --GPLlyh----~~~~~g~~~-----------~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+++++. +....|-.. .....+|.++..++|+++||+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 172 KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 222211 110111110 012246999999999999998654
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-12 Score=130.83 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=98.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|+.|+|+|+|..||..++-..... ....
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~--------------------------~~~~---- 193 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEA--------------------------LAAL---- 193 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------------------cccc----
Confidence 4579999999999999999999999999999999998766322100 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-CCh-hhHHHHHHHHHHhccCCcEEEEecCcchhhhh--c-
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-DTA-HNIVEYIEIISRILKDGGVWINLGPLLYHFAD--L- 343 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI-Dta-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~--~- 343 (412)
....++.|..+|+.++ .++||+|+++..+ +.. ..+...++.+.+ |++||++|.+.|-.+.+.- .
T Consensus 194 ----~~~~~~~f~~~Dl~~l------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~ 262 (315)
T PLN02585 194 ----PPEVLPKFEANDLESL------SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI 262 (315)
T ss_pred ----ccccceEEEEcchhhc------CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH
Confidence 0011367788887543 3689999877543 222 224456666664 5789999988775443221 1
Q ss_pred ---cCCCC--CcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 344 ---YGQED--EMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 344 ---~g~~~--~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
..+.. ...+..+.+|++++++++||+++..+.+
T Consensus 263 g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 263 GELFPGPSKATRAYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred HhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 11111 1134458999999999999999886643
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=120.66 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=107.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
+..++++|... ..++.+|||+|||+|.++..++++|..|+|+|+|..|+..++-.+.. .
T Consensus 42 ~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~---~------------- 100 (219)
T TIGR02021 42 RRKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG---R------------- 100 (219)
T ss_pred HHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---c-------------
Confidence 33466666531 12467999999999999999999999999999999999877622210 0
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG 328 (412)
....++.+..+|+.++ .++||+|+.++.+. ...++...++.+++++++|+
T Consensus 101 ----------------------~~~~~i~~~~~d~~~~------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~ 152 (219)
T TIGR02021 101 ----------------------DVAGNVEFEVNDLLSL------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERV 152 (219)
T ss_pred ----------------------CCCCceEEEECChhhC------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCE
Confidence 0012367888887664 26899998875432 34567889999999999776
Q ss_pred EEEEecCcchhh------hhccCC--CCCcccCCCHHHHHHHHHhCCCEEEEEeeccccC
Q 015160 329 VWINLGPLLYHF------ADLYGQ--EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (412)
Q Consensus 329 ~wIN~GPLlyh~------~~~~g~--~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y 380 (412)
++. +.|-.+.+ ...... .+.....++.++++.+++++||+++..+....+|
T Consensus 153 ~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 153 IFT-FAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred EEE-ECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 665 44322111 010111 1111335799999999999999999877544443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=129.74 Aligned_cols=140 Identities=19% Similarity=0.084 Sum_probs=101.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+++. +..|+|+|+|..|+..++-.. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~-----------------------------~----- 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----------------------------P----- 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh-----------------------------h-----
Confidence 4579999999999999999875 578999999999987655110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhh--hhcc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF--ADLY 344 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~--~~~~ 344 (412)
..++.+..+|+.++.. ..++||+|+++..+....+....|++++++|||||.++-++|..-.+ ....
T Consensus 159 --------~~~i~~i~gD~e~lp~---~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~ 227 (340)
T PLN02490 159 --------LKECKIIEGDAEDLPF---PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF 227 (340)
T ss_pred --------ccCCeEEeccHHhCCC---CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh
Confidence 0125678889877532 35789999998767666677889999999999999997665532111 0000
Q ss_pred CCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 345 GQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 345 g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.+......+.+|+.++++++||+.++...
T Consensus 228 --~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 228 --ADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred --hhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 00001135899999999999999988654
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-12 Score=126.43 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=97.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.+-+.+.- +++.+|||+|||-|.++..+|++ |..|+|+.+|......++-.. .+.
T Consensus 50 k~~~~~~~~~l---~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~---~~~--------------- 108 (273)
T PF02353_consen 50 KLDLLCEKLGL---KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERI---REA--------------- 108 (273)
T ss_dssp HHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHH---HCS---------------
T ss_pred HHHHHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHH---Hhc---------------
Confidence 44555554432 37889999999999999999999 999999999999987655221 111
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~w 330 (412)
...+++.+..+|++++. .+||.||++=-+... .|...||+.|+++|||||++
T Consensus 109 --------------------gl~~~v~v~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 109 --------------------GLEDRVEVRLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp --------------------TSSSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred --------------------CCCCceEEEEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence 11234778889998863 489999998544443 68999999999999999999
Q ss_pred EE--ec--CcchhhhhccC-------CCCCcccCCCHHHHHHHHHhCCCEEEEEeecc
Q 015160 331 IN--LG--PLLYHFADLYG-------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (412)
Q Consensus 331 IN--~G--PLlyh~~~~~g-------~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~ 377 (412)
+. ++ .-.++.+.... .-| .+.-.+.+++...+++.||+++......
T Consensus 163 ~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-gg~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 163 VLQTITHRDPPYHAERRSSSDFIRKYIFP-GGYLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp EEEEEEE--HHHHHCTTCCCHHHHHHTST-TS---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred EEEecccccccchhhcCCCceEEEEeeCC-CCCCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 73 21 11122110000 001 1234589999999999999998866443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=125.12 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=100.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..+++. |. .|+|+|+|..|+..++...... .
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--------------------------g---- 126 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--------------------------G---- 126 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999888775 54 6999999999998776322100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC-----cchhh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP-----LLYHF 340 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP-----Llyh~ 340 (412)
..++.+..+|+.++.. ..+.||+|++...+....+...+++.++++|||||+++-.+. +....
T Consensus 127 ---------~~~v~~~~~d~~~l~~---~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~ 194 (272)
T PRK11873 127 ---------YTNVEFRLGEIEALPV---ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEI 194 (272)
T ss_pred ---------CCCEEEEEcchhhCCC---CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHH
Confidence 0136788899877532 357899999887777777788999999999999999985322 11100
Q ss_pred hh---ccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 341 AD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 341 ~~---~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.. ..+.. ..-.++.+++..++++.||..++.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 195 RNDAELYAGC--VAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred HHhHHHHhcc--ccCCCCHHHHHHHHHHCCCCceEE
Confidence 00 00000 012368899999999999998764
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.2e-13 Score=117.05 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=82.1
Q ss_pred CCCeEEEecCCCChhHHHHHH-c--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISH-L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|+++..|++ . +..++|+|+|..|+..|+..+...
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------------------------------- 51 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------------------------------- 51 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-------------------------------
Confidence 567999999999999999994 4 679999999999998777433210
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
. ..++.+.++|+.++... . .+.||+|++...+....+....++.+.++||+||++|-
T Consensus 52 -------~-~~ni~~~~~d~~~l~~~-~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 52 -------G-LDNIEFIQGDIEDLPQE-L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp -------T-STTEEEEESBTTCGCGC-S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------c-ccccceEEeehhccccc-c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEE
Confidence 0 11488999999995421 1 17999999987777777888999999999999999985
|
... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=114.90 Aligned_cols=145 Identities=21% Similarity=0.253 Sum_probs=101.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..+++++ ..++|+|+|..|+..++-.... .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~---------------------------- 99 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD---L---------------------------- 99 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc---c----------------------------
Confidence 45799999999999999999987 7899999999998765521100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Ccchh---
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLLYH--- 339 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G---PLlyh--- 339 (412)
....++.+..+|+.++.. ..+.||+|+..+.+....++...++.+.++|||||++|-+. |-...
T Consensus 100 -------~~~~~~~~~~~d~~~~~~---~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 169 (239)
T PRK00216 100 -------GLSGNVEFVQGDAEALPF---PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKK 169 (239)
T ss_pred -------ccccCeEEEecccccCCC---CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHH
Confidence 001236788889877532 35789999988877777788999999999999999997532 11100
Q ss_pred ----h--------hhccCCCCC--------cccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 ----F--------ADLYGQEDE--------MSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 ----~--------~~~~g~~~~--------~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+ ....+.... ..-..+.+++..+++++||++++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 224 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYR 224 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeee
Confidence 0 000000000 0113588999999999999998765
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=115.18 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=106.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
--++++....... ++.+||++|||+|.++..++++|..|+|+|+|..|+..++......
T Consensus 35 ~~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------------------ 93 (233)
T PRK05134 35 LRLNYIREHAGGL---FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALES------------------ 93 (233)
T ss_pred HHHHHHHHhccCC---CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHc------------------
Confidence 3356666655322 5678999999999999999999999999999999987655211100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
...+.+..+|+.++.. ...+.||+|+..+.+....+....++.+.++|+|||+++-
T Consensus 94 ----------------------~~~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 94 ----------------------GLKIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred ----------------------CCceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEE
Confidence 0014556667665431 1247899999887777777888999999999999999874
Q ss_pred ecCc--chhh-------hhccC----CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPL--LYHF-------ADLYG----QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPL--lyh~-------~~~~g----~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..+- ...+ +...+ ......-.++.+++..++++.||+++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 150 STLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred EecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 2221 1000 00000 00001224689999999999999998754
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=131.23 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=99.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+....
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~----------------------------------- 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI----------------------------------- 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh-----------------------------------
Confidence 5679999999999999999986 7899999999999976651100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc------hhhh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL------YHFA 341 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl------yh~~ 341 (412)
....++.+..+|+.+... ..++||+|++..-+....+...+++.++++|||||.++-..+.. -.+.
T Consensus 311 -----~~~~~v~~~~~d~~~~~~---~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 382 (475)
T PLN02336 311 -----GRKCSVEFEVADCTKKTY---PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA 382 (475)
T ss_pred -----cCCCceEEEEcCcccCCC---CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH
Confidence 001236788899876532 25789999987655555678899999999999999998432110 0000
Q ss_pred hccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 342 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 342 ~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.... .. .....+.+++.++++++||+++..
T Consensus 383 ~~~~-~~-g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 383 EYIK-QR-GYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred HHHH-hc-CCCCCCHHHHHHHHHHCCCeeeee
Confidence 0000 00 112458999999999999998853
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=122.90 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=81.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
+++.+....+ ++.+|||+|||||.++..|+++ |..|+|+|+|..||..|+ ++
T Consensus 41 ~~~~l~~~~~-----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~-------~~--------------- 93 (226)
T PRK05785 41 LVKTILKYCG-----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL-------VA--------------- 93 (226)
T ss_pred HHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH-------hc---------------
Confidence 4555555433 3469999999999999999999 689999999999997554 00
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.+|+.++. ..+++||+|++.|-|...+|+.+.+++++++|||++.++-
T Consensus 94 -------------------------~~~~~~d~~~lp---~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile 145 (226)
T PRK05785 94 -------------------------DDKVVGSFEALP---FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIA 145 (226)
T ss_pred -------------------------cceEEechhhCC---CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEE
Confidence 012457777653 3468999999998888888899999999999999655554
Q ss_pred e
Q 015160 333 L 333 (412)
Q Consensus 333 ~ 333 (412)
+
T Consensus 146 ~ 146 (226)
T PRK05785 146 M 146 (226)
T ss_pred e
Confidence 4
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-12 Score=124.27 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=87.5
Q ss_pred HHHHHHHHHHh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 015160 147 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (412)
Q Consensus 147 kv~s~L~q~~R--DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~ 221 (412)
+=.....+|++ +|-. -..|.+ .+....+.+.+.++ ++.+||++|||+|+.+..|++. |+.|+|+|+|.
T Consensus 26 ~G~~lf~~i~~~peYy~-tr~E~~-il~~~~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 26 RGSELFEQICELPEYYP-TRTEAA-ILERHADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred hHHHHHHHHHCCCcccc-HHHHHH-HHHHHHHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 44445677766 4442 233332 23334444544443 3468999999999999999888 69999999999
Q ss_pred HHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCC-CCccE
Q 015160 222 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV-GAWDA 300 (412)
Q Consensus 222 ~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~-~~fD~ 300 (412)
.||..+.--+. . .+|.+ ++..++|||.+....+... ....+
T Consensus 99 ~mL~~a~~~l~---~--------------------------~~p~~---------~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 99 DALKESAAALA---A--------------------------DYPQL---------EVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred HHHHHHHHHHH---h--------------------------hCCCc---------eEEEEEEcccchhhhhcccccCCeE
Confidence 99976652211 0 01111 2677899998743211111 11223
Q ss_pred EEE---ecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 301 VVT---CFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 301 VvT---~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
++. .+..-..++....|+.|+++|+|||++|
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 332 1333345567899999999999999998
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=112.75 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=100.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..+++.+. .++|+|+|..|+..++-..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999876 79999999999865441110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC---cc----h
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP---LL----Y 338 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP---Ll----y 338 (412)
...++.+..+|+.++.. ..+.||+|++.+.+....+....++.+.++|||||+++-.+. .. .
T Consensus 86 --------~~~~i~~~~~d~~~~~~---~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 154 (223)
T TIGR01934 86 --------LPLNIEFIQADAEALPF---EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154 (223)
T ss_pred --------cCCCceEEecchhcCCC---CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHH
Confidence 01126778888887532 246899999888777777888999999999999999985322 10 0
Q ss_pred ----hhhhc---cCC---CCCc---------ccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 339 ----HFADL---YGQ---EDEM---------SIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 339 ----h~~~~---~g~---~~~~---------~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+.... .+. .... .-.++.++++.++++.||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 155 FYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceee
Confidence 00000 000 0000 113588999999999999988755
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-11 Score=113.10 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=101.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+.+|||+|||+|.++..+++.|..++|+|+|..|+..++..+.. . .+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~-----------------------~~------ 92 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK---D-----------------------PL------ 92 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH---c-----------------------CC------
Confidence 467999999999999999999999999999999998765522110 0 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc----chhhh---
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA--- 341 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL----lyh~~--- 341 (412)
.++.+..+|+.++.. ...+.||+|++...+....+....++.+.++|+|||+++-..+. .+...
T Consensus 93 -------~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 163 (224)
T TIGR01983 93 -------LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG 163 (224)
T ss_pred -------CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh
Confidence 025677788776532 12378999998877777778889999999999999998743221 00000
Q ss_pred --hccCCCC----CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 342 --DLYGQED----EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 342 --~~~g~~~----~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
...+..+ ...-.++.+++.+++++.||++++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 164 AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 0000000 01124588999999999999998855
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.5e-11 Score=109.69 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+|+ .+..|+|+|.|..|+..++..+.. .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~---~----------------------------- 92 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE---L----------------------------- 92 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH---c-----------------------------
Confidence 367999999999999999986 367999999999999877632210 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
.. .++++..+|+.++.. .++||+|++..+ .++.++++.++++|||||+++-+-+
T Consensus 93 ------~l-~~i~~~~~d~~~~~~----~~~fDlV~~~~~----~~~~~~l~~~~~~LkpGG~lv~~~~----------- 146 (187)
T PRK00107 93 ------GL-KNVTVVHGRAEEFGQ----EEKFDVVTSRAV----ASLSDLVELCLPLLKPGGRFLALKG----------- 146 (187)
T ss_pred ------CC-CCEEEEeccHhhCCC----CCCccEEEEccc----cCHHHHHHHHHHhcCCCeEEEEEeC-----------
Confidence 00 127888899887532 468999997643 4578899999999999999985311
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-...++.++.+..|..+.+.-
T Consensus 147 ------~~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 147 ------RDPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ------CChHHHHHHHHHhcCceEeeeE
Confidence 1234567778888899988754
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=110.24 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..++++|..|+|+|+|+.|+..++..+.. . .
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~----------------------~------- 65 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKL----N----------------------N------- 65 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 346899999999999999999999999999999999766632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh--------------------hhHHHHHHHHHHhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA--------------------HNIVEYIEIISRILKDG 327 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta--------------------~Ni~~yl~~I~~~LKPG 327 (412)
.++.+..+|+.+.. .++||+|++.- |+... .-+.++++.+.++||||
T Consensus 66 -------~~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 66 -------VGLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred -------CceEEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 01566778876642 25899999763 32111 11467899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|.++-+.+ ..-...++..++++.||+.+...
T Consensus 134 G~~~~~~~----------------~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 134 GRVQLIQS----------------SLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CEEEEEEe----------------ccCChHHHHHHHHhCCCeEEEEE
Confidence 99874211 11236888999999999988754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-11 Score=111.55 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=95.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..|+-.....
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~---------------------------------- 108 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA---------------------------------- 108 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4569999999999999999999999999999999998776222100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-C-ChhhHHHHHHHHHHhccCCcEEEEecCc---chhhhhc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-D-TAHNIVEYIEIISRILKDGGVWINLGPL---LYHFADL 343 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI-D-ta~Ni~~yl~~I~~~LKPGG~wIN~GPL---lyh~~~~ 343 (412)
....++.+..+|+.. ..++||+|++...+ . ..+++...++.+.++++ ||.+|.+.|- ...+...
T Consensus 109 ----~~~~~i~~~~~d~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~~~~~~~~~~~l 177 (230)
T PRK07580 109 ----GLAGNITFEVGDLES------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAPYTPLLALLHWI 177 (230)
T ss_pred ----CCccCcEEEEcCchh------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECCccHHHHHHHHh
Confidence 001236788888432 14789999987544 2 34567788888888775 4555554332 1111100
Q ss_pred ---c-CC-CCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 344 ---Y-GQ-EDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 344 ---~-g~-~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
. +. .......++.+++..++++.||++.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 178 GGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred ccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 0 00 11113457999999999999999988653
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.34 E-value=9e-12 Score=115.66 Aligned_cols=137 Identities=19% Similarity=0.174 Sum_probs=94.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+|||+|||+|.++..|++.|. .++|+|+|..|+..++-.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----------------------------------- 78 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL----------------------------------- 78 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-----------------------------------
Confidence 346899999999999999999985 4699999999986544100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
..++.++.+|+.+... ..++||+|++.+.+....+...+++.++++|||||+++-..|..-.+......
T Consensus 79 --------~~~~~~~~~d~~~~~~---~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~ 147 (240)
T TIGR02072 79 --------SENVQFICGDAEKLPL---EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS 147 (240)
T ss_pred --------CCCCeEEecchhhCCC---CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence 0125678888876532 35789999998877766778899999999999999998644322111110000
Q ss_pred -CCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 347 -EDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 347 -~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.....-..+.+++..++.+. |+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 148 FGQHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred HHHhccCCCCHHHHHHHHHHh-cCCcE
Confidence 00001235777888888776 76554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-11 Score=110.83 Aligned_cols=140 Identities=18% Similarity=0.144 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..++++. ..|+|+|+|..|+..++-...
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--------------------------------- 65 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--------------------------------- 65 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---------------------------------
Confidence 56799999999999999999874 589999999999876652100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc----chhhh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA 341 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL----lyh~~ 341 (412)
....++.+..+|+.++.. ..++||+|++...+....+...+++.++++|||||.++-..|- .+...
T Consensus 66 -------~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 135 (241)
T PRK08317 66 -------GLGPNVEFVRGDADGLPF---PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSG 135 (241)
T ss_pred -------CCCCceEEEecccccCCC---CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCC
Confidence 001236778888766432 3578999999887777778899999999999999999854431 11100
Q ss_pred hc---------cCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 342 DL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 342 ~~---------~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+. .... ..-..+..++..+++++||+.+..
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 136 DRALMRKILNFWSDH--FADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred ChHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHcCCCceeE
Confidence 00 0000 001234578999999999987763
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-13 Score=110.55 Aligned_cols=97 Identities=23% Similarity=0.215 Sum_probs=56.2
Q ss_pred EEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC
Q 015160 194 LVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (412)
Q Consensus 194 LvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~ 271 (412)
||+|||+|+++..|+.. +.+++|+|+|..|+..++.-+.. . ....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~------~-------------------~~~~-------- 47 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE------L-------------------GNDN-------- 47 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH------C-------------------T-----------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh------c-------------------CCcc--------
Confidence 79999999999999999 88999999999997322211100 0 0000
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 272 ~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
...+.+...|..+.. ..++||+|++.+.+...+++.++++.++++|||||++
T Consensus 48 ---~~~~~~~~~~~~~~~----~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 48 ---FERLRFDVLDLFDYD----PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---EEEEE--SSS---CC----C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ---eeEEEeecCChhhcc----cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 001222333322211 1369999999988877789999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-11 Score=110.86 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||+|||+|.++..+|..+ ..|+|+|.|..|+..++...+. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~----~----------------------------- 89 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE----L----------------------------- 89 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH----h-----------------------------
Confidence 5689999999999999999775 5799999999999766532210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
. ..++.++.+|+.++.. .++||+|++.. ..++.++++.++++|||||+++- ++.
T Consensus 90 -----~-~~~i~~i~~d~~~~~~----~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi-----~~~------- 143 (181)
T TIGR00138 90 -----G-LNNVEIVNGRAEDFQH----EEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLA-----YKG------- 143 (181)
T ss_pred -----C-CCCeEEEecchhhccc----cCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEE-----EcC-------
Confidence 0 0137889999887521 47899998755 24567889999999999999984 221
Q ss_pred CCcccCCCHHHHHHHHHh---CCCEEEEEee
Q 015160 348 DEMSIELSLEDVKRVALH---YGFEFEKEKT 375 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~---~GFeii~e~~ 375 (412)
.-...++..+.++ .||+.++...
T Consensus 144 -----~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 144 -----KKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred -----CCcHHHHHHHHHhhhhcCceEeeccc
Confidence 0123444444444 8999887653
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=122.45 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=93.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++ |..|+|+|+|..|+..++-... .
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~----------------------------~------ 212 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA----------------------------G------ 212 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----------------------------c------
Confidence 5679999999999999999986 8899999999999976652110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEE--ecCcc-hhhhh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN--LGPLL-YHFAD 342 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN--~GPLl-yh~~~ 342 (412)
.++.+..+|+.++ .++||+|++...+.. ..++..+++.++++|||||+++. ++.-. +...+
T Consensus 213 --------l~v~~~~~D~~~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~ 278 (383)
T PRK11705 213 --------LPVEIRLQDYRDL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVD 278 (383)
T ss_pred --------CeEEEEECchhhc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCC
Confidence 0145667777654 268999998754443 35678999999999999999985 22111 00000
Q ss_pred cc-C--CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 343 LY-G--QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~~-g--~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+ . .-| ...-.+.+++..+++. ||++....
T Consensus 279 ~~i~~yifp-~g~lps~~~i~~~~~~-~~~v~d~~ 311 (383)
T PRK11705 279 PWINKYIFP-NGCLPSVRQIAQASEG-LFVMEDWH 311 (383)
T ss_pred CCceeeecC-CCcCCCHHHHHHHHHC-CcEEEEEe
Confidence 00 0 001 1234588999998764 89988744
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.5e-12 Score=121.05 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~ 263 (412)
...+|||+|||+|.++..|++. |..|+|+|+|..|+..|+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------------------------------- 131 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------------------------------- 131 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---------------------------------
Confidence 3468999999999999999875 34789999999999655410
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 264 iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
. .++.+..+|..++. ...++||+|++.|. . ..+++++++|||||++|.+.|.-.|
T Consensus 132 ~-----------~~~~~~~~d~~~lp---~~~~sfD~I~~~~~---~----~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 132 Y-----------PQVTFCVASSHRLP---FADQSLDAIIRIYA---P----CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred C-----------CCCeEEEeecccCC---CcCCceeEEEEecC---C----CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 0 12567888877653 34679999998653 1 2367899999999999987664433
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=105.79 Aligned_cols=122 Identities=14% Similarity=0.001 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+++++ ..|+|+|+|..|+..++-.... + .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~------~----------------------~--- 79 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR------F----------------------G--- 79 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH------h----------------------C---
Confidence 45699999999999999999885 5899999999998766521110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
..++.+..+|..... .+.||+|+..... .++.++++.++++|||||+++-...
T Consensus 80 --------~~~i~~~~~d~~~~~-----~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~----------- 132 (187)
T PRK08287 80 --------CGNIDIIPGEAPIEL-----PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFI----------- 132 (187)
T ss_pred --------CCCeEEEecCchhhc-----CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEe-----------
Confidence 012567777764221 3579999875432 3466789999999999999974110
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
..-+.+++..++++.||+.++.
T Consensus 133 -----~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 133 -----LLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred -----cHhhHHHHHHHHHHCCCCcceE
Confidence 1124578889999999986663
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-12 Score=103.05 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=68.8
Q ss_pred EEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 193 CLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 193 VLvPGCGlGRLa~eLA~~G-----f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
|||+|||+|+.+..|++.. -.++|+|+|..||..++..... . .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---~-----------------------~------ 48 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---D-----------------------G------ 48 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH---T-----------------------T------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh---c-----------------------C------
Confidence 7999999999999999884 7999999999999765521100 0 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG 328 (412)
.++.++++|+.++.. ..++||+|++.+ ..-+.+.+...++.+.++|||||
T Consensus 49 --------~~~~~~~~D~~~l~~---~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 49 --------PKVRFVQADARDLPF---SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------TTSEEEESCTTCHHH---HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --------CceEEEECCHhHCcc---cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 026789999988643 357999999842 22345568999999999999998
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=118.39 Aligned_cols=143 Identities=20% Similarity=0.226 Sum_probs=99.6
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||.|||+|-|+.-||+.|..|+|+|.|..|+.+|+-- .+.. | +. .
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h--~~~d-------P-----------------~~----~- 138 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH--KKMD-------P-----------------VL----E- 138 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh--hhcC-------c-----------------hh----c-
Confidence 46799999999999999999999999999999999988711 1100 0 00 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE----EecCcchh-----h
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI----NLGPLLYH-----F 340 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI----N~GPLlyh-----~ 340 (412)
....-++++...|..++ .+.||+||+.-.+....|+.++++...++|||||.+. |-+=+-|+ .
T Consensus 139 --~~~~y~l~~~~~~~E~~------~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~ 210 (282)
T KOG1270|consen 139 --GAIAYRLEYEDTDVEGL------TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLA 210 (282)
T ss_pred --cccceeeehhhcchhhc------ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHH
Confidence 01112356666664443 3569999998877777889999999999999999885 22222222 1
Q ss_pred hhc-----cCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 341 ADL-----YGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 341 ~~~-----~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+.. .|+.. ..-.++.+|+.+++...|+.+..
T Consensus 211 E~vl~ivp~Gth~-~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 211 EIVLRIVPKGTHT-WEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred HHHHHhcCCCCcC-HHHcCCHHHHHHHHHhcCcchhh
Confidence 111 12111 12357999999999999998765
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=115.80 Aligned_cols=133 Identities=21% Similarity=0.159 Sum_probs=92.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.|+++.. ++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..... +
T Consensus 149 ~l~~l~~~~~-----~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~----n-------------- 205 (288)
T TIGR00406 149 CLEWLEDLDL-----KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL----N-------------- 205 (288)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 4455555432 457999999999999999999997 799999999999877632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.+ ...+.+..++.... ..++||+|+++.. +..+.+++..+.++|||||++|.
T Consensus 206 --------~~------------~~~~~~~~~~~~~~-----~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 206 --------QV------------SDRLQVKLIYLEQP-----IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred --------CC------------CcceEEEecccccc-----cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEE
Confidence 00 01134444442221 1468999998764 34567899999999999999997
Q ss_pred ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.|.+. -..++++..+++. |++++..
T Consensus 258 sgi~~----------------~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 258 SGILE----------------TQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred EeCcH----------------hHHHHHHHHHHcc-CceeeEe
Confidence 66431 2357888888775 9887643
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-11 Score=113.15 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=89.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.|.+... ++.+|||+|||+|.++..+++.|.. |+|+|+|..|+..|+-.+.. +
T Consensus 109 ~l~~l~~~~~-----~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~----~-------------- 165 (250)
T PRK00517 109 CLEALEKLVL-----PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL----N-------------- 165 (250)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 4555555432 5679999999999999999999986 99999999999766622110 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.+. ..+.+..+ ..+||+|+++.. +..+..+++.+.++|||||++|-
T Consensus 166 --------~~~------------~~~~~~~~-----------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 166 --------GVE------------LNVYLPQG-----------DLKADVIVANIL---ANPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred --------CCC------------ceEEEccC-----------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 00111111 127999987643 33467889999999999999996
Q ss_pred ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.|.+ .-..+++...+++.||+++...
T Consensus 212 sgi~----------------~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 212 SGIL----------------EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred EECc----------------HhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 1245788999999999998744
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-11 Score=111.24 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=91.0
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccc
Q 015160 189 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v 262 (412)
++.+|||+|||+|.++..|++ .| ..|+|+|+|..|+..|+-.. ..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~---~~-------------------------- 110 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP---RR-------------------------- 110 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc---cc--------------------------
Confidence 567999999999999999885 35 48999999999997665110 00
Q ss_pred ccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEE-e--cCcc
Q 015160 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-L--GPLL 337 (412)
Q Consensus 263 ~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wIN-~--GPLl 337 (412)
.++.+..++...+.. ..++||+|++++.+...++ +...++.++++|| |+++|+ + +++.
T Consensus 111 -------------~~~~~~~~~~~~l~~---~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~ 173 (232)
T PRK06202 111 -------------PGVTFRQAVSDELVA---EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLA 173 (232)
T ss_pred -------------CCCeEEEEecccccc---cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHH
Confidence 012333343333321 2478999999886654443 5689999999998 777776 2 2222
Q ss_pred hhhhhc-----c-C---CCC-Cccc--CCCHHHHHHHHHhCCCEEEEEe
Q 015160 338 YHFADL-----Y-G---QED-EMSI--ELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 338 yh~~~~-----~-g---~~~-~~~i--eLS~EEL~~ll~~~GFeii~e~ 374 (412)
|..... . + ..+ ..++ .++.+|+.+++++ ||+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 174 YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQW 221 (232)
T ss_pred HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEecc
Confidence 211000 0 1 011 1122 4699999999999 99998765
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-11 Score=115.97 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=104.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcc
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--------f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr 260 (412)
.+.+|||.|||||-+|+.|.+.- -.|++.|+|++||.++.. ++.+ +
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq---Ra~~-----------------------~ 153 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ---RAKK-----------------------R 153 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH---HHhh-----------------------c
Confidence 56899999999999999997762 469999999999987661 1100 1
Q ss_pred ccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-------e
Q 015160 261 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-------L 333 (412)
Q Consensus 261 ~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-------~ 333 (412)
+++ ......++.||..++. +.+++||+.+..|=|-...++.+.|++.||+|||||+|.. .
T Consensus 154 ~l~----------~~~~~~w~~~dAE~Lp---Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 154 PLK----------ASSRVEWVEGDAEDLP---FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCC----------cCCceEEEeCCcccCC---CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 111 0123789999988874 4579999998888898888899999999999999999973 1
Q ss_pred cCcchhhhhc------------cCCCCC-----ccc--CCCHHHHHHHHHhCCCEEEE
Q 015160 334 GPLLYHFADL------------YGQEDE-----MSI--ELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 334 GPLlyh~~~~------------~g~~~~-----~~i--eLS~EEL~~ll~~~GFeii~ 372 (412)
-|+.|-+..- +|.... -++ .++.||++.+++.+||....
T Consensus 221 ~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 2333321110 011100 012 24899999999999998875
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.4e-11 Score=123.95 Aligned_cols=141 Identities=15% Similarity=0.091 Sum_probs=96.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|++++..|+|+|+|..|+..++-. +.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~-~~----------------------------------- 80 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI-NG----------------------------------- 80 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-hc-----------------------------------
Confidence 456899999999999999999999999999999998543310 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
...++.++.+|+.+... +...++||+|++.+.+... ..+.+.++.++++|||||+++-.-.. ++...+...
T Consensus 81 -----~~~~i~~~~~d~~~~~~-~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~-~~~~~~~~~ 153 (475)
T PLN02336 81 -----HYKNVKFMCADVTSPDL-NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC-FHQSGDSKR 153 (475)
T ss_pred -----cCCceEEEEeccccccc-CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCCcccc
Confidence 01236788888864221 2235789999987644322 33789999999999999999853211 111100000
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.-..+.-.+..++++++.+.||..+.
T Consensus 154 ~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 154 KNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred cCCCCeecChHHHHHHHHHheeccCC
Confidence 00113446788999999999998775
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=106.29 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=95.5
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
++++.+.++ ++.+|||+|||+|.++..|++. +..++|+|+|..|+..++ +.
T Consensus 4 ~~~i~~~i~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-------~~---------------- 55 (194)
T TIGR02081 4 LESILNLIP-----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-------AR---------------- 55 (194)
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-------Hc----------------
Confidence 344555554 3468999999999999999865 568899999999986443 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE-E
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI-N 332 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI-N 332 (412)
++.++.+|+.+... +...++||+|++...+...+|....++++.+.+|++.+-+ |
T Consensus 56 -----------------------~~~~~~~d~~~~l~-~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 56 -----------------------GVNVIQGDLDEGLE-AFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred -----------------------CCeEEEEEhhhccc-ccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 13456677654211 1235789999998777777788899999999888643322 1
Q ss_pred ecCcc--hhhhhc-----cC-------CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLL--YHFADL-----YG-------QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLl--yh~~~~-----~g-------~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++... +.+... .+ ..+ ..-..+.+++.+++++.||++++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 112 FGYWRVRWSILTKGRMPVTGELPYDWYNTP-NIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred hhHHHHHHHHHhCCccccCCCCCccccCCC-CcccCcHHHHHHHHHHCCCEEEEEE
Confidence 11100 000000 00 000 0124699999999999999999865
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=115.12 Aligned_cols=155 Identities=18% Similarity=0.236 Sum_probs=107.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.+.+.+.-+ ++.+|||+|||-|.++...|++ |-.|+|+++|..|+..++-.+ .+.
T Consensus 60 k~~~~~~kl~L~---~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~---~~~--------------- 118 (283)
T COG2230 60 KLDLILEKLGLK---PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI---AAR--------------- 118 (283)
T ss_pred HHHHHHHhcCCC---CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH---HHc---------------
Confidence 556666655433 7899999999999999999999 899999999999987655211 000
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC-ChhhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID-TAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FID-ta~Ni~~yl~~I~~~LKPGG~w 330 (412)
....++.+...|..++. +.||.||+.= |=. ..+|..+||+.++++|+|||..
T Consensus 119 --------------------gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 119 --------------------GLEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred --------------------CCCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 11124677788888763 4599999973 211 2367899999999999999999
Q ss_pred EE--e-cCcc-h-hhhhcc--CCCCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 331 IN--L-GPLL-Y-HFADLY--GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 331 IN--~-GPLl-y-h~~~~~--g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
+. + +|-. + .+.+-. -.-| ...-.|..++.....+.||.+......
T Consensus 173 llh~I~~~~~~~~~~~~~i~~yiFP-gG~lPs~~~i~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 173 LLHSITGPDQEFRRFPDFIDKYIFP-GGELPSISEILELASEAGFVVLDVESL 224 (283)
T ss_pred EEEEecCCCcccccchHHHHHhCCC-CCcCCCHHHHHHHHHhcCcEEehHhhh
Confidence 86 2 2210 0 111000 0001 133458999999999999999886543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-10 Score=102.27 Aligned_cols=129 Identities=19% Similarity=0.282 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|.+|+|+|+|..|+..++..+... .+.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~--------------------------~~~----- 71 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN--------------------------NIR----- 71 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc--------------------------CCC-----
Confidence 4568999999999999999999999999999999997665322110 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC--------------------ChhhHHHHHHHHHHhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------------------TAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FID--------------------ta~Ni~~yl~~I~~~LKPG 327 (412)
..++.+..+|+.+... .++||+|++.. |+. ....+..+++.+.++||||
T Consensus 72 ------~~~~~~~~~d~~~~~~----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 72 ------NNGVEVIRSDLFEPFR----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred ------CcceEEEecccccccc----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 0014567778766432 34799998652 221 1233567899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|.++-.-+ -....+++..++.+.||+++...
T Consensus 142 G~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 142 GRILLLQS----------------SLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred eEEEEEEc----------------ccCCHHHHHHHHHHCCCeeeeee
Confidence 98874211 01235789999999999987644
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-10 Score=104.87 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=99.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++.++|++ +-.|+|+|+|..|+..++...+..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~------------------------------- 88 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF------------------------------- 88 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence 5679999999999999999875 357999999999997765222110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
....++.++.+|+.++.. ...+.||+|+.... ..++.++++.+.++|||||+++-.-+.
T Consensus 89 -------g~~~~v~~~~~d~~~~l~--~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~--------- 147 (198)
T PRK00377 89 -------GVLNNIVLIKGEAPEILF--TINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAIL--------- 147 (198)
T ss_pred -------CCCCCeEEEEechhhhHh--hcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEeec---------
Confidence 001236678888876432 12368999987542 245678999999999999999831110
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEE-EEEE
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFW-TMRK 401 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~-~i~s~Y~~d~~sm~~~~Y~~~f~-VarK 401 (412)
.-+.+++..++++.||..+..+ .+..++.......+... +++|. +.+|
T Consensus 148 -------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-npv~~~~~~~ 197 (198)
T PRK00377 148 -------LETVNNALSALENIGFNLEITEVIIAKGMKTKVGTAMMTR-NPIFIISGEK 197 (198)
T ss_pred -------HHHHHHHHHHHHHcCCCeEEEEEehhhcccccCCcEeecC-CCEEEEEEec
Confidence 1135788888999999765543 34444433332233333 44443 3444
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=95.46 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..++++ +-.|+|+|.|..|+..++..++.. .+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~~-- 68 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----------------------------GV-- 68 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----------------------------CC--
Confidence 3469999999999999999997 358999999999997666322110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.++.++.+|..+... ...++||+|++..-. ....++++.++++|||||++|-
T Consensus 69 ---------~~~~~~~~~~~~~~~--~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 69 ---------SNIVIVEGDAPEALE--DSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ---------CceEEEeccccccCh--hhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEE
Confidence 124566677554211 123689999875422 2356899999999999999984
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=107.53 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+++.|. .|+|+|+|..|+..++-.+... .
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------------------~------ 83 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA--------------------------G------ 83 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh--------------------------C------
Confidence 456999999999999999999998 8999999999997665221100 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh-------------------hhHHHHHHHHHHhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA-------------------HNIVEYIEIISRILKD 326 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta-------------------~Ni~~yl~~I~~~LKP 326 (412)
.++.+..+|+.+... .++||+|++. |+-... ..+..+++.+.++|||
T Consensus 84 --------~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 84 --------VDVDVRRGDWARAVE----FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred --------CeeEEEECchhhhcc----CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC
Confidence 014567788876422 4689999986 332111 1245678899999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
||+++-+ +- . ....+++..++++.||.+...
T Consensus 152 gG~l~~~-----~~----------~-~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 152 GGSLLLV-----QS----------E-LSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CcEEEEE-----Ee----------c-ccCHHHHHHHHHHCCCCeEEE
Confidence 9999831 10 0 124567778888888876653
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.8e-11 Score=98.20 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=77.3
Q ss_pred CeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
.+|||||||+|+++..++++| ..++|+|+++..+..++..+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~----------------------------------- 46 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN----------------------------------- 46 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC-----------------------------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc-----------------------------------
Confidence 589999999999999999999 89999999999998777443210
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------hhHHHHHHHHHHhccCCcEEEEe
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------HNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
....++.++.+|+.++.. +...++||+|+++- |.... ....+.++.+.++|||||+++-+
T Consensus 47 ---~~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 47 ---GLDDRVEVIVGDARDLPE-PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp ---TTTTTEEEEESHHHHHHH-TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---cCCceEEEEECchhhchh-hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 011247899999998751 12368999999873 44321 12357899999999999999853
|
... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=107.45 Aligned_cols=151 Identities=20% Similarity=0.337 Sum_probs=102.5
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhhccc
Q 015160 159 WAAEGKTERDQCYKPILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTE 235 (412)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~filn~~~ 235 (412)
|-.+..+|| |+++|..+..... .....+|||+|||.|.+.+.||+.||. .+|+|+|...+..|.-|..+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 766767777 6777776553100 113349999999999999999999996 5999999999977765543211
Q ss_pred ccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec--cc--C
Q 015160 236 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF--FI--D 308 (412)
Q Consensus 236 ~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F--FI--D 308 (412)
. .+.++|-+.|+++-- +..++||+|.- .= -| |
T Consensus 116 ~--------------------------------------~n~I~f~q~DI~~~~---~~~~qfdlvlDKGT~DAisLs~d 154 (227)
T KOG1271|consen 116 F--------------------------------------SNEIRFQQLDITDPD---FLSGQFDLVLDKGTLDAISLSPD 154 (227)
T ss_pred C--------------------------------------CcceeEEEeeccCCc---ccccceeEEeecCceeeeecCCC
Confidence 1 112556666665421 12356666652 10 11 2
Q ss_pred Ch-hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 309 TA-HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 309 ta-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.+ .-+.-|+..+.++|+|||+|+-. +-..+.+||.+.++..||++..+
T Consensus 155 ~~~~r~~~Y~d~v~~ll~~~gifvIt-----------------SCN~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 155 GPVGRLVVYLDSVEKLLSPGGIFVIT-----------------SCNFTKDELVEEFENFNFEYLST 203 (227)
T ss_pred CcccceeeehhhHhhccCCCcEEEEE-----------------ecCccHHHHHHHHhcCCeEEEEe
Confidence 11 12357999999999999999841 44689999999999999988764
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=113.72 Aligned_cols=123 Identities=21% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||||||+|.++.+.+..|..|+|+|++..|+..++..++.. + +
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~--------------------------g--~---- 229 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY--------------------------G--I---- 229 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh--------------------------C--C----
Confidence 5678999999999999999999999999999999997665322110 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--ccc----C--Ch-hhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI----D--TA-HNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFI----D--ta-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
.++.+..+|+.++.. ..+.||+|++. |-. . .. ....+.++.++++|||||.++-.-|
T Consensus 230 -------~~i~~~~~D~~~l~~---~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~---- 295 (329)
T TIGR01177 230 -------EDFFVKRGDATKLPL---SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP---- 295 (329)
T ss_pred -------CCCeEEecchhcCCc---ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc----
Confidence 114678899988643 25789999986 211 1 11 2246889999999999999875322
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+..++..+++++|| ++..
T Consensus 296 ---------------~~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 296 ---------------TRIDLESLAEDAFR-VVKR 313 (329)
T ss_pred ---------------CCCCHHHHHhhcCc-chhe
Confidence 11244467889999 7653
|
This family is found exclusively in the Archaea. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=107.06 Aligned_cols=127 Identities=20% Similarity=0.116 Sum_probs=86.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|.++..||++ +..|+|+|+|..|+..++..+.. .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~----~---------------------------- 87 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE----E---------------------------- 87 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH----c----------------------------
Confidence 3568999999999999999987 45799999999999766522110 0
Q ss_pred CCCCCCCCCCceeEEeccc-ccccCCCCCCCCccEEEEeccc---CChh-----hHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 267 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCFFI---DTAH-----NIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF-~ely~~~~~~~~fD~VvT~FFI---Dta~-----Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
. ..++.++.+|+ ..+.. ....++||+|++.|-. .... ....+++.++++|||||+++-..+
T Consensus 88 ------~-~~~v~~~~~d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~-- 157 (202)
T PRK00121 88 ------G-LTNLRLLCGDAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD-- 157 (202)
T ss_pred ------C-CCCEEEEecCHHHHHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--
Confidence 0 02367888998 44321 0125789999876521 1111 146789999999999999984221
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEE
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFE 371 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii 371 (412)
..--.+++...+++.||...
T Consensus 158 --------------~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 158 --------------WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred --------------CHHHHHHHHHHHHhCccccc
Confidence 11223567778888898766
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=103.57 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=93.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+++.+.+.++. .+.+|||+|||+|.++..+++. +..++|+|+|..|+..++..+...
T Consensus 76 l~~~~l~~~~~----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------------- 134 (251)
T TIGR03534 76 LVEAALERLKK----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----------------- 134 (251)
T ss_pred HHHHHHHhccc----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 44444444431 3458999999999999999987 678999999999997766332100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------h--------------
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------A-------------- 310 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------a-------------- 310 (412)
. ..++.+..+|+.+... .++||+|+++. |+.. .
T Consensus 135 ---------~-------------~~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~ 188 (251)
T TIGR03534 135 ---------G-------------LDNVTFLQSDWFEPLP----GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG 188 (251)
T ss_pred ---------C-------------CCeEEEEECchhccCc----CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC
Confidence 0 0136788899877432 47899999863 2211 0
Q ss_pred -----hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 311 -----HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 311 -----~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
......++.+.++|||||+++-- .+ .-..+++++++++.||+.+...
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~~gG~~~~~----~~-------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 189 GEDGLDFYRRIIAQAPRLLKPGGWLLLE----IG-------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcccCCEEEEE----EC-------------ccHHHHHHHHHHhCCCCceEEE
Confidence 11235688999999999998731 00 1234789999999999876543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-09 Score=102.38 Aligned_cols=136 Identities=18% Similarity=0.080 Sum_probs=84.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||+.. -.|+|+|+|..||.... ..+.+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~---~~a~~------------------------------ 118 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL---EVAEE------------------------------ 118 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH---HHhhh------------------------------
Confidence 66799999999999999999872 48999999999985322 11100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
..++.++.+|..+........+.||+|+.. +.........++.++++|||||.++-. +-|.-.+ ...
T Consensus 119 --------~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--~~~p~~~~~~L~~~~r~LKpGG~lvI~--v~~~~~d-~~~ 185 (226)
T PRK04266 119 --------RKNIIPILADARKPERYAHVVEKVDVIYQD--VAQPNQAEIAIDNAEFFLKDGGYLLLA--IKARSID-VTK 185 (226)
T ss_pred --------cCCcEEEECCCCCcchhhhccccCCEEEEC--CCChhHHHHHHHHHHHhcCCCcEEEEE--Eeccccc-CcC
Confidence 012455677765421000112569999743 222222345689999999999999853 1121111 011
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+ -... ++..+.++++||++++..
T Consensus 186 ~~---~~~~-~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 186 DP---KEIF-KEEIRKLEEGGFEILEVV 209 (226)
T ss_pred CH---HHHH-HHHHHHHHHcCCeEEEEE
Confidence 11 1223 445588989999998755
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-10 Score=109.22 Aligned_cols=133 Identities=16% Similarity=0.065 Sum_probs=92.3
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..++++ +.+|+|+|+|..|+..++..+ |
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------------------------------~-- 109 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------------------------------P-- 109 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------------------------------c--
Confidence 468999999999999999876 579999999999986654110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh---hh---------------HHHHHHHHHHhccCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA---HN---------------IVEYIEIISRILKDG 327 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta---~N---------------i~~yl~~I~~~LKPG 327 (412)
++.++.+|++++.. .++||+|++. |+.... .+ +.+.++.+..+|||+
T Consensus 110 ---------~v~~v~~D~~e~~~----~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~ 176 (279)
T PHA03411 110 ---------EAEWITSDVFEFES----NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPT 176 (279)
T ss_pred ---------CCEEEECchhhhcc----cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCC
Confidence 14678899988642 3689999985 553211 12 235567777888999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccC
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y 380 (412)
|..+-. |.- .|-..-.|+.+|++.+++..||...--=.+++.|
T Consensus 177 G~~~~~----yss------~~~y~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~ 219 (279)
T PHA03411 177 GSAGFA----YSG------RPYYDGTMKSNKYLKWSKQTGLVTYAGCGIDTSI 219 (279)
T ss_pred ceEEEE----Eec------cccccccCCHHHHHHHHHhcCcEecCCCCcccce
Confidence 965531 211 1111235999999999999999886544455444
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-09 Score=105.28 Aligned_cols=140 Identities=12% Similarity=0.038 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|||+|.++..++++. ..++++|+ +.|+..++..+. +.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~----------------------------- 195 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA---EK----------------------------- 195 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH---hC-----------------------------
Confidence 45799999999999999999994 67999998 678865542111 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcc-------
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL------- 337 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLl------- 337 (412)
...++++++.+||.+... ..+|+|+...++. ..+.....|+++++.|||||.++-.-.+.
T Consensus 196 ------gl~~rv~~~~~d~~~~~~-----~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~ 264 (306)
T TIGR02716 196 ------GVADRMRGIAVDIYKESY-----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 264 (306)
T ss_pred ------CccceEEEEecCccCCCC-----CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch
Confidence 112347899999986321 2369988776554 23345789999999999999997532111
Q ss_pred ----hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 338 ----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 338 ----yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+++-...+......-..+.+|++++++++||+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 265 FDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 00000000000000012479999999999998764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-10 Score=109.16 Aligned_cols=121 Identities=11% Similarity=0.162 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc-------CCeEEEEeCCHHHHHHHHhhhhccccccccc------ccccccccCC
Q 015160 189 SPPACLVPGAGLGR----LALEISHL-------GFISQGNEFSYYMMICSSFILNHTETAGEWN------IYPWIHSNCN 251 (412)
Q Consensus 189 ~~~rVLvPGCGlGR----La~eLA~~-------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~------I~P~i~~~sn 251 (412)
++.+||++|||+|. +|..|++. ++.|+|+|+|..||..|+--. -...... +..|.....+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~---y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI---YPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC---CCHHHHhcCCHHHHhhhEEeCCC
Confidence 45799999999997 45555553 478999999999998776211 0000000 0001000000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCc
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG 328 (412)
...+.+ ....++.|.++|+.+... ..++||+|++.. |++ .++..+.++.++++|||||
T Consensus 176 ---------~~~v~~------~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 176 ---------KYRVKP------ELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred ---------eEEECh------HHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCe
Confidence 011100 122358899999988542 257899999854 344 3457799999999999999
Q ss_pred EEE
Q 015160 329 VWI 331 (412)
Q Consensus 329 ~wI 331 (412)
+++
T Consensus 237 ~L~ 239 (264)
T smart00138 237 YLF 239 (264)
T ss_pred EEE
Confidence 998
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=103.36 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=69.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..|++. |..++|+|+|..|+..|+-. +|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~---------------------------------~~- 88 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY---------------------------------LP- 88 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh---------------------------------CC-
Confidence 4568999999999999999987 68999999999999766510 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
++.+..+|+.+. ...++||+|++... ++ ..++.+++++++++++ +++|
T Consensus 89 ----------~~~~~~~d~~~~----~~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 89 ----------NINIIQGSLFDP----FKDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred ----------CCcEEEeeccCC----CCCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcC--cEEE
Confidence 134567887762 23679999998753 43 3568899999999983 4444
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-10 Score=105.61 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=90.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.-.++|+||||.|.|+..||.+.-.++++|+|...|..|+--+..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~----------------------------------- 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG----------------------------------- 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-----------------------------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-----------------------------------
Confidence 345899999999999999999998999999999999776622210
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++++.++|+.+... .++||+||.. |||+..+++..+++.+...|+|||.+|- | |+.+...
T Consensus 88 ------~~~V~~~~~dvp~~~P----~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~-g----~~rd~~c 152 (201)
T PF05401_consen 88 ------LPHVEWIQADVPEFWP----EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVF-G----HARDANC 152 (201)
T ss_dssp -------SSEEEEES-TTT-------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEE-E----EE-HHHH
T ss_pred ------CCCeEEEECcCCCCCC----CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEE-E----EecCCcc
Confidence 1237889999887643 5899998854 7899888899999999999999999994 1 3322200
Q ss_pred -CCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 346 -QEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 346 -~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.. ......|.|.+++.+. |..++
T Consensus 153 ~~w---gh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 153 RRW---GHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp HHT---T-S--HHHHHHHHHHH-SEEEE
T ss_pred ccc---CcccchHHHHHHHHHH-hhhee
Confidence 01 1346899999999875 55554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=108.35 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=97.9
Q ss_pred HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCc
Q 015160 177 ELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSD 255 (412)
Q Consensus 177 ~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~ 255 (412)
.|..++++- .+.+|||+|||.|..+++++.+|.. |.|+|-+..-+.-..++-.......
T Consensus 106 rl~p~l~~L---~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~----------------- 165 (315)
T PF08003_consen 106 RLLPHLPDL---KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP----------------- 165 (315)
T ss_pred HHHhhhCCc---CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCc-----------------
Confidence 355555433 6789999999999999999999985 9999999866554443322110000
Q ss_pred ccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE---
Q 015160 256 SDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--- 332 (412)
Q Consensus 256 ~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--- 332 (412)
. ..++---+.++ |. .+.||+|++.=.|=.-.+..+.|+.+...|||||.+|-
T Consensus 166 -----~----------------~~~lplgvE~L---p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 166 -----P----------------VFELPLGVEDL---PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred -----c----------------EEEcCcchhhc---cc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 0 11110011122 22 57899999875554556788999999999999999982
Q ss_pred --ecCcchh--hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 333 --LGPLLYH--FADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 333 --~GPLlyh--~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
-|+.-.. -++.+...++..+-.|..-|+..++++||+.++
T Consensus 221 vi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 221 VIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred eecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 1221111 011122223334556999999999999999887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-09 Score=104.95 Aligned_cols=165 Identities=16% Similarity=0.083 Sum_probs=96.9
Q ss_pred HhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhh
Q 015160 156 VRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 156 ~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn 232 (412)
+|.|..- |. .+-..|..-+....-.++.+|||+|||+|.++..||+.- =.|+|+|+|..|+. -+++
T Consensus 107 yR~w~p~----rS----Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~---dLl~ 175 (293)
T PTZ00146 107 YRVWNPF----RS----KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR---DLTN 175 (293)
T ss_pred eeeeCCc----cc----HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH---HHHH
Confidence 8899864 22 233344333332222367799999999999999999872 37999999987651 1111
Q ss_pred cccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCCh
Q 015160 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTA 310 (412)
Q Consensus 233 ~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta 310 (412)
.+.+. .|+.++.+|++.. |.. ..+.||+|+.... ..
T Consensus 176 ~ak~r--------------------------------------~NI~~I~~Da~~p~~y~~--~~~~vDvV~~Dva--~p 213 (293)
T PTZ00146 176 MAKKR--------------------------------------PNIVPIIEDARYPQKYRM--LVPMVDVIFADVA--QP 213 (293)
T ss_pred Hhhhc--------------------------------------CCCEEEECCccChhhhhc--ccCCCCEEEEeCC--Cc
Confidence 11100 1245566776542 211 1357999976543 12
Q ss_pred hhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-cCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCC
Q 015160 311 HNIVEYIEIISRILKDGGVWINLGPLLYHFADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (412)
Q Consensus 311 ~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~-~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~ 382 (412)
.+...++.+++++|||||.+|- .|..... .+.++ ..-++ +|+ +.|++.||++++... ..+|..
T Consensus 214 dq~~il~~na~r~LKpGG~~vI----~ika~~id~g~~p--e~~f~-~ev-~~L~~~GF~~~e~v~-L~Py~~ 277 (293)
T PTZ00146 214 DQARIVALNAQYFLKNGGHFII----SIKANCIDSTAKP--EVVFA-SEV-QKLKKEGLKPKEQLT-LEPFER 277 (293)
T ss_pred chHHHHHHHHHHhccCCCEEEE----EEeccccccCCCH--HHHHH-HHH-HHHHHcCCceEEEEe-cCCccC
Confidence 2344567789999999999984 2322211 11111 11133 445 778899999886553 344544
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-08 Score=94.16 Aligned_cols=99 Identities=19% Similarity=0.156 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++.++|+. +..|+|+|+|..|+..++-.++. + .
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~------~--------------------~----- 88 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR------F--------------------G----- 88 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------h--------------------C-----
Confidence 5679999999999999999875 47899999999998766522110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|+.+.+. .....+|.|+ ++...++.++++.++++|||||+++-
T Consensus 89 --------~~~v~~~~~d~~~~~~--~~~~~~d~v~----~~~~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 89 --------VKNVEVIEGSAPECLA--QLAPAPDRVC----IEGGRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred --------CCCeEEEECchHHHHh--hCCCCCCEEE----EECCcCHHHHHHHHHHhcCCCeEEEE
Confidence 0126677788765322 1123457653 23344577999999999999999985
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=100.88 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..+++++ ..|+|+|++. |. + +|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------~-------------------------------~~ 91 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------P-------------------------------IV 91 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------C-------------------------------CC
Confidence 46699999999999999998874 4799999998 41 0 01
Q ss_pred CCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEec---ccCC-hhh-------HHHHHHHHHHhccCCcE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF---FIDT-AHN-------IVEYIEIISRILKDGGV 329 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~-----~~~~~~~fD~VvT~F---FIDt-a~N-------i~~yl~~I~~~LKPGG~ 329 (412)
++.+++||+++... .+...+.||+|++.. +... ..+ +...|+.++++|||||+
T Consensus 92 -----------~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 92 -----------GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred -----------CcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 14678888887420 011257899999854 2111 111 24689999999999999
Q ss_pred EEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEE
Q 015160 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRK 401 (412)
Q Consensus 330 wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK 401 (412)
++-. .|. .-...++...+++ +|+.++.....++-..+ .-.|+||+.
T Consensus 161 ~vi~---~~~-------------~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s---------~e~~~~~~~ 206 (209)
T PRK11188 161 FVVK---VFQ-------------GEGFDEYLREIRS-LFTKVKVRKPDSSRARS---------REVYIVATG 206 (209)
T ss_pred EEEE---Eec-------------CcCHHHHHHHHHh-CceEEEEECCccccccC---------ceeEEEeec
Confidence 9851 121 1233445555533 68877654433333322 356777764
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=99.18 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=76.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.++..+.+.+.. .++.+|||+|||+|+++..|+++ +-.|+|+|+|..|+..++-.++..
T Consensus 59 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------------- 120 (205)
T PRK13944 59 HMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--------------- 120 (205)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---------------
Confidence 345555555432 25579999999999999999875 358999999999987665222110
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
....++++..+|+.+... ..+.||+|+...-+. .+.+.+.+.|||||+
T Consensus 121 -----------------------~~~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~ 168 (205)
T PRK13944 121 -----------------------GYWGVVEVYHGDGKRGLE---KHAPFDAIIVTAAAS------TIPSALVRQLKDGGV 168 (205)
T ss_pred -----------------------CCCCcEEEEECCcccCCc---cCCCccEEEEccCcc------hhhHHHHHhcCcCcE
Confidence 001236788899877532 246899998765433 233578899999999
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
+|-
T Consensus 169 lvi 171 (205)
T PRK13944 169 LVI 171 (205)
T ss_pred EEE
Confidence 974
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.7e-09 Score=101.22 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=110.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|-++..||++ . ..++|+|+...|...|+--++. +
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l----n---------------------------- 91 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL----N---------------------------- 91 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh----C----------------------------
Confidence 4679999999999999999999 6 6899999999998766622211 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC----------------hhhHHHHHHHHHHhccCCc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----------------AHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----------------a~Ni~~yl~~I~~~LKPGG 328 (412)
...++++++++|+.++.. .....+||+|+++ ||-.. .-++.++++...++|||||
T Consensus 92 ------~l~~ri~v~~~Di~~~~~-~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 92 ------PLEERIQVIEADIKEFLK-ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred ------cchhceeEehhhHHHhhh-cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 123458999999998764 2334579999987 65221 1247788999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 015160 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 404 (412)
Q Consensus 329 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~~ 404 (412)
.+.-+-| .....||..++.+++|+..+...+...=...+ +.+...++|...
T Consensus 165 ~l~~V~r-----------------~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A--------~~vLv~~~k~~~ 215 (248)
T COG4123 165 RLAFVHR-----------------PERLAEIIELLKSYNLEPKRIQFVYPKIGKAA--------NRVLVEAIKGGK 215 (248)
T ss_pred EEEEEec-----------------HHHHHHHHHHHHhcCCCceEEEEecCCCCCcc--------eEEEEEEecCCC
Confidence 9974311 13567899999999999988765554444444 344556677643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.5e-09 Score=101.45 Aligned_cols=124 Identities=13% Similarity=0.177 Sum_probs=87.6
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..||++ +..|+|+|+|..|+..|+.-.+. +
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~----~----------------------------- 168 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER----H----------------------------- 168 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 468999999999999999987 56899999999999877632210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHHH
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISR 322 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yl~~I~~ 322 (412)
....++.++.+|+.+... .++||+|++.= |+.. ..-....++.+.+
T Consensus 169 -----~~~~~i~~~~~D~~~~~~----~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~ 239 (284)
T TIGR03533 169 -----GLEDRVTLIQSDLFAALP----GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAAD 239 (284)
T ss_pred -----CCCCcEEEEECchhhccC----CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 001237889999876332 35799999861 2111 0123466888889
Q ss_pred hccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 323 ~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+|||||+++- + +..+.+++++++...||.....
T Consensus 240 ~L~~gG~l~~--------e----------~g~~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 240 HLNENGVLVV--------E----------VGNSMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred hcCCCCEEEE--------E----------ECcCHHHHHHHHHhCCCceeee
Confidence 9999999873 0 1124468999999999977653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-09 Score=99.74 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=76.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..+.+.+.. .++.+|||+|||+|.++..||+++-. |+|+|++..|+..|+..+...
T Consensus 65 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~---------------- 125 (215)
T TIGR00080 65 MVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL---------------- 125 (215)
T ss_pred HHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 44555554432 25679999999999999999998544 999999999998776333110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
. ..++.++.+|..+... ..+.||+|+..... ..+.+.+.+.|||||++
T Consensus 126 ----------g-------------~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~l 173 (215)
T TIGR00080 126 ----------G-------------LDNVIVIVGDGTQGWE---PLAPYDRIYVTAAG------PKIPEALIDQLKEGGIL 173 (215)
T ss_pred ----------C-------------CCCeEEEECCcccCCc---ccCCCCEEEEcCCc------ccccHHHHHhcCcCcEE
Confidence 0 0236788899877542 24689999865322 23456788999999999
Q ss_pred EE
Q 015160 331 IN 332 (412)
Q Consensus 331 IN 332 (412)
|-
T Consensus 174 v~ 175 (215)
T TIGR00080 174 VM 175 (215)
T ss_pred EE
Confidence 84
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=9e-09 Score=99.08 Aligned_cols=124 Identities=23% Similarity=0.271 Sum_probs=87.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+++.. ..|+|+|+|..|+..++..+..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--------------------------------- 154 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--------------------------------- 154 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 45789999999999999999986 7899999999999776632210
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC-------------------------hhhHHHHHHHH
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-------------------------AHNIVEYIEII 320 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt-------------------------a~Ni~~yl~~I 320 (412)
....++.++.+|+.+... .++||+|++.. |+.. ...+..+++.+
T Consensus 155 ------~~~~~i~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~ 224 (275)
T PRK09328 155 ------GLGARVEFLQGDWFEPLP----GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQA 224 (275)
T ss_pred ------CCCCcEEEEEccccCcCC----CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHH
Confidence 001236788888865321 47899999863 3321 12235678888
Q ss_pred HHhccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 321 SRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 321 ~~~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.++|||||+++- .|+ -..++++.++++.||..+..
T Consensus 225 ~~~Lk~gG~l~~e~g~------------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 225 PRYLKPGGWLLLEIGY------------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHhcccCCEEEEEECc------------------hHHHHHHHHHHhCCCceeEE
Confidence 899999999873 211 12467889999999985543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=5e-09 Score=95.37 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=78.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
-+++.+... +..+|||+|||+|-++..+++++-. |+++|+|..++..++.-+.. +
T Consensus 22 lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~----n------------ 78 (170)
T PF05175_consen 22 LLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER----N------------ 78 (170)
T ss_dssp HHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH----T------------
T ss_pred HHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh----c------------
Confidence 456666654 3468999999999999999999876 99999999999877632210 0
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-----hhHHHHHHHHHHhcc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-----HNIVEYIEIISRILK 325 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta-----~Ni~~yl~~I~~~LK 325 (412)
.. +++.++.+|+.+-.. .++||+|+++--+... .-+.+.++...++||
T Consensus 79 ----------------------~~-~~v~~~~~d~~~~~~----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk 131 (170)
T PF05175_consen 79 ----------------------GL-ENVEVVQSDLFEALP----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK 131 (170)
T ss_dssp ----------------------TC-TTEEEEESSTTTTCC----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE
T ss_pred ----------------------Cc-ccccccccccccccc----ccceeEEEEccchhcccccchhhHHHHHHHHHHhcc
Confidence 00 116778888776432 5899999998522222 235678999999999
Q ss_pred CCcEEE
Q 015160 326 DGGVWI 331 (412)
Q Consensus 326 PGG~wI 331 (412)
|||.++
T Consensus 132 ~~G~l~ 137 (170)
T PF05175_consen 132 PGGRLF 137 (170)
T ss_dssp EEEEEE
T ss_pred CCCEEE
Confidence 999886
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=117.64 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~--------------------------------- 464 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN--------------------------------- 464 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh---------------------------------
Confidence 4569999999999999999875 57999999999999765511100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-------------ChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-------------TAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID-------------ta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
...++.++.+|+.++.. ....++||+|++++.++ ...++...|+.++++|||||.+|..
T Consensus 465 -------~g~~ie~I~gDa~dLp~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 465 -------EGRSWNVIKGDAINLSS-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred -------cCCCeEEEEcchHhCcc-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 00125678888877531 12357899999875332 2346789999999999999999963
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=100.19 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|.++..+|++ +..|+|+|+|..|+..++-.+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-------------------------------- 63 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-------------------------------- 63 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--------------------------------
Confidence 3468999999999999999998 568999999999997665221100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc---CChh--h---HHHHHHHHHHhccCCcEEEEecCcch
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI---DTAH--N---IVEYIEIISRILKDGGVWINLGPLLY 338 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI---Dta~--N---i~~yl~~I~~~LKPGG~wIN~GPLly 338 (412)
. ..++.++.+|+.++.......+.+|.|+..|=. ...+ + ..+.++.++++|||||.++-...
T Consensus 64 ------~-l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td--- 133 (194)
T TIGR00091 64 ------G-LKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD--- 133 (194)
T ss_pred ------C-CCCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC---
Confidence 0 024788999987653110124689999876521 1110 0 14789999999999999974211
Q ss_pred hhhhccCCCCCcccCCCHHHHHHHHHhCC-CEEEE
Q 015160 339 HFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEK 372 (412)
Q Consensus 339 h~~~~~g~~~~~~ieLS~EEL~~ll~~~G-Feii~ 372 (412)
...-.+++..++.+.| |+.+.
T Consensus 134 -------------~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 134 -------------NEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred -------------CHHHHHHHHHHHHhCCCeEecc
Confidence 1123455566666555 87765
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.7e-09 Score=97.65 Aligned_cols=112 Identities=15% Similarity=0.054 Sum_probs=78.5
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
..+.+...+.+.+.. .++.+|||+|||+|.++..|++.. -.|+|+|++..|+..++-.+...
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------------ 124 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------------ 124 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------
Confidence 334455555555432 256799999999999999998873 58999999999998776333210
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
...++.+..||+.+.+. ..+.||+|+....+. ++.+.+.+.|||
T Consensus 125 ---------------------------g~~~v~~~~gd~~~~~~---~~~~fD~I~~~~~~~------~~~~~l~~~Lkp 168 (212)
T PRK13942 125 ---------------------------GYDNVEVIVGDGTLGYE---ENAPYDRIYVTAAGP------DIPKPLIEQLKD 168 (212)
T ss_pred ---------------------------CCCCeEEEECCcccCCC---cCCCcCEEEECCCcc------cchHHHHHhhCC
Confidence 01237889999876543 247899997654332 234577889999
Q ss_pred CcEEEE
Q 015160 327 GGVWIN 332 (412)
Q Consensus 327 GG~wIN 332 (412)
||++|-
T Consensus 169 gG~lvi 174 (212)
T PRK13942 169 GGIMVI 174 (212)
T ss_pred CcEEEE
Confidence 999985
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-09 Score=80.98 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=75.5
Q ss_pred eEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
+||++|||.|.++..+++ .+..++|+|.+..++..++.....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------- 43 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------------------------------------- 43 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-------------------------------------
Confidence 589999999999999998 667999999999998655421100
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.+..+|+.+... ...++||+|++...+.. ......+++.+.+.|||||+++-
T Consensus 44 --~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 44 --LLADNVEVLKGDAEELPP--EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred --ccccceEEEEcChhhhcc--ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 001126777888877532 12468999998876665 66788999999999999999973
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-09 Score=106.51 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=79.3
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
..|.+++|.. ...+|||+|||+|.++..+++++ ..|+++|.|+.|+..|+.-+.. +.
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~----n~-------------- 276 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----NM-------------- 276 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC--------------
Confidence 3455566643 34599999999999999999984 7899999999999877622210 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC---ChhhHHHHHHHHHHhccCCc
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID---TAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID---ta~Ni~~yl~~I~~~LKPGG 328 (412)
+ ....++.+..+|+.+... .++||+|+++ |... +.....+.|+.++++|||||
T Consensus 277 -----------~-------~~~~~v~~~~~D~l~~~~----~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 277 -----------P-------EALDRCEFMINNALSGVE----PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred -----------c-------ccCceEEEEEccccccCC----CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC
Confidence 0 001136778888765321 3589999996 4321 22234678999999999999
Q ss_pred EEEEe
Q 015160 329 VWINL 333 (412)
Q Consensus 329 ~wIN~ 333 (412)
.++-+
T Consensus 335 ~L~iV 339 (378)
T PRK15001 335 ELYIV 339 (378)
T ss_pred EEEEE
Confidence 98854
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=104.03 Aligned_cols=221 Identities=20% Similarity=0.222 Sum_probs=114.4
Q ss_pred HHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015160 150 CIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 150 s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (412)
.=|...++.=+..-. | +......+..|.+.|.... .++.++||+|||.--.-..-|..=| .++..|++..=+..-+
T Consensus 20 ~Yl~~yY~~~~~~~~-~-~~~~~~~L~~l~~~f~~g~-~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~ 96 (256)
T PF01234_consen 20 AYLDTYYSFPSGDDA-E-DEILLFFLKNLHETFSSGG-VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELE 96 (256)
T ss_dssp HHHHHHHSTSSS-CH-H-HHHHHHHHHHHHHHHHTSS-S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHH
T ss_pred HHHHHhcCCCccCcc-c-chhHHHHHHHHHHHhCccC-cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHH
Confidence 345555543333222 2 2244456666766665332 2567999999998555333344445 5899999987664322
Q ss_pred hhhhcccccccccccccccccCCCCC-------cccCccccccCCCCCCCCCCCCceeEEecccccccCCCC---CCCCc
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLS-------DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS---QVGAW 298 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s-------~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~---~~~~f 298 (412)
.=|+.. .+-.| -|++-.-++... .+.++|.. | =..+..|.+.....+. ...+|
T Consensus 97 kWl~~~-~a~DW--s~~~~~v~~lEg~~~~~~e~e~~lR~~-V-------------k~Vv~cDV~~~~pl~~~~~~p~~~ 159 (256)
T PF01234_consen 97 KWLRKE-GAFDW--SPFWKYVCELEGKREKWEEKEEKLRRA-V-------------KQVVPCDVTQPNPLDPPVVLPPKF 159 (256)
T ss_dssp HHHTT--TS--T--HHHHHHHHHHTTSSSGHHHHHHHHHHH-E-------------EEEEE--TTSSSTTTTS-SS-SSE
T ss_pred HHHCCC-CCCCc--cHHHHHHHhccCCcchhhhHHHHHHHh-h-------------ceEEEeeccCCCCCCccccCccch
Confidence 223222 22222 132222221111 11112110 0 1355567665322111 12369
Q ss_pred cEEEEecccCCh-hhHHHH---HHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 299 DAVVTCFFIDTA-HNIVEY---IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 299 D~VvT~FFIDta-~Ni~~y---l~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|+|+|+|+|+.+ +++.+| ++.|.++|||||.+|-.|-|--.+.. .|+.....+.|+.+.|++.++++||+|+..+
T Consensus 160 D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~-vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 160 DCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM-VGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE-ETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred hhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE-ECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 999999998755 455555 77788899999999976555322221 2333233678999999999999999999866
Q ss_pred eccccCCCCcccccccccceEEE-EEEE
Q 015160 375 TIETTYTTNPRSMMQNRYFTAFW-TMRK 401 (412)
Q Consensus 375 ~i~s~Y~~d~~sm~~~~Y~~~f~-VarK 401 (412)
. ......|...|| ||||
T Consensus 239 ~----------~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 239 K----------QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp G-----------TTTB---EEEEEEEEE
T ss_pred c----------ccCcCCCCcEEEEEEeC
Confidence 1 122344555565 7887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-08 Score=103.72 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=86.2
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++..... .
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~----~----------------------------- 298 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD----L----------------------------- 298 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 458999999999999999975 57899999999999877632210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChh------------------------hHHHHHHHHHH
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAH------------------------NIVEYIEIISR 322 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~------------------------Ni~~yl~~I~~ 322 (412)
..++.+..+|+.+... + ..++||+|+++= |+.+.. -+.+.++.+.+
T Consensus 299 -------g~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~ 369 (423)
T PRK14966 299 -------GARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPD 369 (423)
T ss_pred -------CCcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHH
Confidence 0126788899876321 1 135799999863 433211 12345666678
Q ss_pred hccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 323 ILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 323 ~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.|||||.++- +|. --.+++++++++.||..++..
T Consensus 370 ~LkpgG~lilEiG~------------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 370 RLAEGGFLLLEHGF------------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred hcCCCcEEEEEECc------------------cHHHHHHHHHHHCCCcEEEEE
Confidence 9999999763 211 125689999999999876543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=94.76 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=76.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+...+...+.. .++.+|||+|||+|.++..|++.+..|+|+|.|..|+..++-.+...
T Consensus 65 ~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~------------------ 123 (212)
T PRK00312 65 YMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL------------------ 123 (212)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC------------------
Confidence 344455544432 25679999999999999999999779999999999987666332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
+ ..++.+..+|+.+... ..+.||+|+....+ ..+.+.+.+.|||||++|-
T Consensus 124 --------~-------------~~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 124 --------G-------------LHNVSVRHGDGWKGWP---AYAPFDRILVTAAA------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred --------C-------------CCceEEEECCcccCCC---cCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEE
Confidence 0 0126788888765432 24789999865422 2335677899999999984
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=96.58 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=85.4
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..++++ |..|+|+|+|..|+..++.-++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---------------------------------- 132 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---------------------------------- 132 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 358999999999999999876 67899999999999877632210
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------------hhHHHHHHHHH
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 321 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------------------------~Ni~~yl~~I~ 321 (412)
.+..++.+|+.+.... ...++||+|+++- |+.+. .-+.+.++.+.
T Consensus 133 --------~~~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~ 203 (251)
T TIGR03704 133 --------AGGTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAP 203 (251)
T ss_pred --------cCCEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHH
Confidence 0024577787653210 1135799999873 33221 01346677778
Q ss_pred HhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 322 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 322 ~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++|||||+++-. ++ .-..+++..++++.||+.....
T Consensus 204 ~~L~~gG~l~l~----~~-------------~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 204 DWLAPGGHLLVE----TS-------------ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HhcCCCCEEEEE----EC-------------cchHHHHHHHHHHCCCCceeeE
Confidence 999999998831 11 0124689999999999876654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=101.16 Aligned_cols=136 Identities=29% Similarity=0.298 Sum_probs=95.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
-.+++|+++.. ++.+|||+|||+|-|++..+++|.. |.|+|+.+..+.+|+- |.. .|
T Consensus 151 lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e--Na~--~N------------- 208 (300)
T COG2264 151 LCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE--NAR--LN------------- 208 (300)
T ss_pred HHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH--HHH--Hc-------------
Confidence 45677777653 6789999999999999999999986 9999999999988772 211 01
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+. .. ......+-.+.. ..+.||+||.+- .|+=+......++++|||||++|
T Consensus 209 ---------~v~--~~----------~~~~~~~~~~~~----~~~~~DvIVANI---LA~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 209 ---------GVE--LL----------VQAKGFLLLEVP----ENGPFDVIVANI---LAEVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred ---------CCc--hh----------hhcccccchhhc----ccCcccEEEehh---hHHHHHHHHHHHHHHcCCCceEE
Confidence 000 00 000011111111 136899999876 34446789999999999999999
Q ss_pred EecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
--|=| .=-.+.+++.+++.||+++...
T Consensus 261 lSGIl----------------~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 261 LSGIL----------------EDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred EEeeh----------------HhHHHHHHHHHHhCCCeEeEEE
Confidence 76621 1126788899999999998854
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-09 Score=104.11 Aligned_cols=132 Identities=24% Similarity=0.285 Sum_probs=90.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
-.++.|+++.. ++.+|||+|||+|-|+.--+++|. .|.|+|+++..+..|+.-.. .|
T Consensus 150 lcl~~l~~~~~-----~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~----~N------------- 207 (295)
T PF06325_consen 150 LCLELLEKYVK-----PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAE----LN------------- 207 (295)
T ss_dssp HHHHHHHHHSS-----TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHH----HT-------------
T ss_pred HHHHHHHHhcc-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHH----Hc-------------
Confidence 46777777643 557999999999999999999998 59999999999877662211 01
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+. .++.. ....+. ..++||+|+.+-.-+. +...+..+.++|||||++|
T Consensus 208 ---------~~~------------~~~~v--~~~~~~-----~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lI 256 (295)
T PF06325_consen 208 ---------GVE------------DRIEV--SLSEDL-----VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLI 256 (295)
T ss_dssp ---------T-T------------TCEEE--SCTSCT-----CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEE
T ss_pred ---------CCC------------eeEEE--EEeccc-----ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEE
Confidence 000 11211 111121 1378999998766443 5678889999999999999
Q ss_pred EecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
--|=| .=-.+++++.+++ ||++++..
T Consensus 257 lSGIl----------------~~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 257 LSGIL----------------EEQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp EEEEE----------------GGGHHHHHHHHHT-TEEEEEEE
T ss_pred Ecccc----------------HHHHHHHHHHHHC-CCEEEEEE
Confidence 65522 2245788888877 99998754
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=103.04 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=73.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..+++++ ..|+++|+|..||..|+..+.. + .+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----n----------------------~l----- 245 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----N----------------------GL----- 245 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CC-----
Confidence 4589999999999999999985 4899999999999877633211 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c---cCC-hhhHHHHHHHHHHhccCCcEEEEec
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDT-AHNIVEYIEIISRILKDGGVWINLG 334 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDt-a~Ni~~yl~~I~~~LKPGG~wIN~G 334 (412)
...+..+|+.+. ..+.||+|++.. | +++ .....+.|+.+.++|||||.++-++
T Consensus 246 ---------~~~~~~~D~~~~-----~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 ---------EGEVFASNVFSD-----IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ---------CCEEEEcccccc-----cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 024456676542 146899999874 2 233 3456789999999999999997543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=98.99 Aligned_cols=140 Identities=18% Similarity=0.157 Sum_probs=92.2
Q ss_pred CCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 190 PPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
+.+|||||||+|.++..++++ ...|+|+|++..|+..|+..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------------------------------- 96 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------------------------------- 96 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------------------------------
Confidence 569999999999999999874 358999999999997766211
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChh---------h-HHHHHHHHHHhccCCcEEE-
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAH---------N-IVEYIEIISRILKDGGVWI- 331 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~---------N-i~~yl~~I~~~LKPGG~wI- 331 (412)
| ++.+..+|+..... .++||+||++ |+..... . ....++.+.++|+||+..|
T Consensus 97 ~-----------~~~~~~~D~~~~~~----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 97 P-----------EATWINADALTTEF----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred c-----------CCEEEEcchhcccc----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 0 14567788876422 4689999998 5522211 1 3457888889888888644
Q ss_pred -EecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCC
Q 015160 332 -NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (412)
Q Consensus 332 -N~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~ 381 (412)
++.+.-|.+...+.. .-..+-.+++...++.|....--=.|++.|-
T Consensus 162 ~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (241)
T PHA03412 162 QMSANFRYSGTHYFRQ----DESTTSSKCKKFLDETGLEMNPGCGIDTGYY 208 (241)
T ss_pred cccccCcccCccceee----ccCcccHHHHHHHHhcCeeecCCCCccceee
Confidence 344444432111100 1135667888899999987755445665553
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-08 Score=97.03 Aligned_cols=121 Identities=13% Similarity=0.190 Sum_probs=85.3
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+.. .
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~----~------------------------------ 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER----H------------------------------ 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h------------------------------
Confidence 58999999999999999987 46899999999999877632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHHHh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 323 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yl~~I~~~ 323 (412)
....++.++.+|+.+... .++||+|++.= |+.. ..-....++.+.++
T Consensus 181 ----~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~ 252 (307)
T PRK11805 181 ----GLEDRVTLIESDLFAALP----GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY 252 (307)
T ss_pred ----CCCCcEEEEECchhhhCC----CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh
Confidence 001237889999876322 35799999861 2211 01234678888999
Q ss_pred ccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 324 LKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 324 LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
|||||+++- +| .+.+++.+++.+.||....
T Consensus 253 L~pgG~l~~E~g-------------------~~~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 253 LTEDGVLVVEVG-------------------NSRVHLEEAYPDVPFTWLE 283 (307)
T ss_pred cCCCCEEEEEEC-------------------cCHHHHHHHHhhCCCEEEE
Confidence 999999873 21 1345688888888886654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.6e-08 Score=94.66 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=85.5
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+|||+|||+|.++..||+.+ ..|+|+|+|..|+..++..... .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~----~------------------------------ 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK----N------------------------------ 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 689999999999999999874 5899999999999877732210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------------------------hhHHHHHHHHHHh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIISRI 323 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------------~Ni~~yl~~I~~~ 323 (412)
....++.++.+|+.+... .++||+|+++= |+... ..+..+++.+.++
T Consensus 162 ----~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~ 233 (284)
T TIGR00536 162 ----QLEHRVEFIQSNLFEPLA----GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY 233 (284)
T ss_pred ----CCCCcEEEEECchhccCc----CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 001237789999876322 24799999862 22211 1355788999999
Q ss_pred ccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHH-hCCCEEEEE
Q 015160 324 LKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVAL-HYGFEFEKE 373 (412)
Q Consensus 324 LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~-~~GFeii~e 373 (412)
|||||+++- +|+ --.+.+.+++. +.||..++.
T Consensus 234 L~~gG~l~~e~g~------------------~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 234 LKPNGFLVCEIGN------------------WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred ccCCCEEEEEECc------------------cHHHHHHHHHHhcCCCceeEE
Confidence 999999873 332 12356777777 468865543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=97.06 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=77.9
Q ss_pred CCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA-~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+..||++|||||+.--..- +.|-.||++|-++.|-.++..- +.++ ++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks---~~E~----------------------k~------ 124 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKS---AAEK----------------------KP------ 124 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHH---Hhhc----------------------cC------
Confidence 45678999999999844332 4789999999999998665511 1111 11
Q ss_pred CCCCCCCCCce-eEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGF-SMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~-s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.++ .|+.++-..+... .++++|+||..|.|-..++..+.|+++.++|||||++|-
T Consensus 125 --------~~~~~fvva~ge~l~~l--~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 125 --------LQVERFVVADGENLPQL--ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred --------cceEEEEeechhcCccc--ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 123 3777777766532 368999999999998889999999999999999999984
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-09 Score=99.81 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=89.1
Q ss_pred cCcc----cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015160 158 DWAA----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 158 DWS~----eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fil 231 (412)
+|+. ..+.||.. |..+.| .++|.. ...+|.|+|||+|..+..|+++ +..++|+|-|..||..|+-
T Consensus 2 ~W~p~~Yl~F~~eRtR---Pa~dLl-a~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-- 72 (257)
T COG4106 2 DWNPDQYLQFEDERTR---PARDLL-ARVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-- 72 (257)
T ss_pred CCCHHHHHHHHHhccC---cHHHHH-hhCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH--
Confidence 5665 45677775 444433 345543 5678999999999999999999 7889999999999976541
Q ss_pred hcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh
Q 015160 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311 (412)
Q Consensus 232 n~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~ 311 (412)
..|| .+|..||..++.. ....|+++++--+.=.+
T Consensus 73 -------------------------------rlp~-----------~~f~~aDl~~w~p----~~~~dllfaNAvlqWlp 106 (257)
T COG4106 73 -------------------------------RLPD-----------ATFEEADLRTWKP----EQPTDLLFANAVLQWLP 106 (257)
T ss_pred -------------------------------hCCC-----------CceecccHhhcCC----CCccchhhhhhhhhhcc
Confidence 1232 5788999998754 46799998875444344
Q ss_pred hHHHHHHHHHHhccCCcEEE
Q 015160 312 NIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 312 Ni~~yl~~I~~~LKPGG~wI 331 (412)
+-.+.|......|.|||++-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred ccHHHHHHHHHhhCCCceEE
Confidence 45688999999999999997
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.2e-08 Score=103.04 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..+|+. +..|+|+|+|..|+..|+..... .
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~----~----------------------------- 185 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK----Y----------------------------- 185 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 468999999999999999875 57899999999999877632210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------------hhHHHHHHHHH
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 321 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------------------------~Ni~~yl~~I~ 321 (412)
...+++.++.+|+.+... .++||+|+++- |+.+. .-+...++.+.
T Consensus 186 -----~l~~~v~~~~~D~~~~~~----~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~ 256 (506)
T PRK01544 186 -----EVTDRIQIIHSNWFENIE----KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAK 256 (506)
T ss_pred -----CCccceeeeecchhhhCc----CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHH
Confidence 001236788899876332 36899999852 22211 11334577888
Q ss_pred HhccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 322 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 322 ~~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
++|||||.++- +| .-..+.+.+++.+.||..+..
T Consensus 257 ~~L~~gG~l~lEig------------------~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 257 QFLKPNGKIILEIG------------------FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred HhccCCCEEEEEEC------------------CchHHHHHHHHHhcCCCceEE
Confidence 99999999873 22 113568888999999986653
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=96.64 Aligned_cols=176 Identities=20% Similarity=0.330 Sum_probs=108.2
Q ss_pred HHHHHHhcCcccCh-------hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeC
Q 015160 151 IIRNIVRDWAAEGK-------TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEF 219 (412)
Q Consensus 151 ~L~q~~RDWS~eG~-------~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~ 219 (412)
..+.-.+-|..-.. ..|. .++.+...+++.... ...+||++|||.|...+.|.+- +..|.+.|+
T Consensus 31 y~~~~~k~wD~fy~~~~~rFfkdR~----wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDf 105 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRFFKDRN----WLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDF 105 (264)
T ss_pred hhcchhhhhhhhhhhccccccchhH----HHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCC
Confidence 45555666765222 1343 455666666664322 2338999999999999999776 578999999
Q ss_pred CHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEeccccc--ccCCCCCCCC
Q 015160 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE--VYSDPSQVGA 297 (412)
Q Consensus 220 S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~e--ly~~~~~~~~ 297 (412)
|+..+..-+ ++. .-.+-..++|+ -|++. +.. +-..++
T Consensus 106 sp~Ai~~vk---~~~-~~~e~~~~afv------------------------------------~Dlt~~~~~~-~~~~~s 144 (264)
T KOG2361|consen 106 SPRAIELVK---KSS-GYDESRVEAFV------------------------------------WDLTSPSLKE-PPEEGS 144 (264)
T ss_pred ChHHHHHHH---hcc-ccchhhhcccc------------------------------------eeccchhccC-CCCcCc
Confidence 998874322 111 00001111111 12221 111 223689
Q ss_pred ccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEE--ecCcchhhhhc------------c-CCCCCcccCCCHHHHH
Q 015160 298 WDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN--LGPLLYHFADL------------Y-GQEDEMSIELSLEDVK 360 (412)
Q Consensus 298 fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN--~GPLlyh~~~~------------~-g~~~~~~ieLS~EEL~ 360 (412)
+|.|+..|.|-. .+.....|+.++++|||||.++- +|- |..+.. + .++....+.++.|||.
T Consensus 145 vD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~--~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~ 222 (264)
T KOG2361|consen 145 VDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR--YDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELD 222 (264)
T ss_pred cceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc--chHHHHhccCCceeecceEEccCCceeeeccHHHHH
Confidence 999988776542 24577899999999999999984 221 221110 0 0112236889999999
Q ss_pred HHHHhCCCEEEEEe
Q 015160 361 RVALHYGFEFEKEK 374 (412)
Q Consensus 361 ~ll~~~GFeii~e~ 374 (412)
.+++++||..+...
T Consensus 223 ~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 223 ELFTKAGFEEVQLE 236 (264)
T ss_pred HHHHhcccchhccc
Confidence 99999999987643
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-08 Score=91.26 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=102.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHH-HHHHhhhhcccccccccccccccc
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMM-ICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML-~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
.||++.|+++++... .+||++|||||-++..+|+.= ..=|--|.....+ .+..++...
T Consensus 12 ~pIl~vL~~~l~~~~----~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--------------- 72 (204)
T PF06080_consen 12 DPILEVLKQYLPDSG----TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--------------- 72 (204)
T ss_pred hHHHHHHHHHhCccC----ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc---------------
Confidence 599999999998542 269999999999999999873 4445777777664 222222110
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEeccc--CChhhHHHHHHHHH
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCFFI--DTAHNIVEYIEIIS 321 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-----~~~~~~~fD~VvT~FFI--Dta~Ni~~yl~~I~ 321 (412)
...+..+++. -|+.+-.- .+...+.||+|++...| -.-......|+...
T Consensus 73 -----~~~Nv~~P~~-------------------lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~ 128 (204)
T PF06080_consen 73 -----GLPNVRPPLA-------------------LDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAA 128 (204)
T ss_pred -----CCcccCCCeE-------------------eecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHH
Confidence 0011111211 12221100 00124689999998754 45566788999999
Q ss_pred HhccCCcEEEEecCcchhhhhc------c-----CCCCCcccCC-CHHHHHHHHHhCCCEEEEE
Q 015160 322 RILKDGGVWINLGPLLYHFADL------Y-----GQEDEMSIEL-SLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 322 ~~LKPGG~wIN~GPLlyh~~~~------~-----g~~~~~~ieL-S~EEL~~ll~~~GFeii~e 373 (412)
++|||||+++-.||..+.-.-. + ...| .+.+ ..|+|.+++.+.|+++++.
T Consensus 129 ~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp--~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 129 RLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP--EWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred HhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC--CcCccCHHHHHHHHHHCCCccCcc
Confidence 9999999999999987642110 0 1122 2333 7899999999999998764
|
The function of this family is unknown. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.2e-08 Score=90.39 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.||||+|||.|.|...|.+ ++-.++|+|++...+..+- +
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv-------~------------------------------- 54 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV-------A------------------------------- 54 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH-------H-------------------------------
Confidence 567999999999999888866 7999999999998864221 1
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc----
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL---- 343 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~---- 343 (412)
.+++.+++|+.+--. .+.+++||.|+-.--|....+..+.|+++.| -|..-|-.=|.+-||...
T Consensus 55 --------rGv~Viq~Dld~gL~-~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlR---Vgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 55 --------RGVSVIQGDLDEGLA-DFPDQSFDYVILSQTLQAVRRPDEVLEEMLR---VGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred --------cCCCEEECCHHHhHh-hCCCCCccEEehHhHHHhHhHHHHHHHHHHH---hcCeEEEEecChHHHHHHHHHH
Confidence 125678888765211 2447899999875555555666666666654 455555211222232221
Q ss_pred -cCC-------------CCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 344 -YGQ-------------EDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 344 -~g~-------------~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
.|. .|+.. .+|..|.+.+..+.|++|++....
T Consensus 123 ~~GrmPvt~~lPy~WYdTPNih-~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDTPNIH-LCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred hcCCCCCCCCCCCcccCCCCcc-cccHHHHHHHHHHCCCEEEEEEEE
Confidence 111 12111 359999999999999999987643
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.3e-09 Score=99.24 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=98.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.-.++||+|||||-.+-.|-.+--+.+|+|+|..||..|. ++ .+|-
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~-------eK---g~YD------------------------ 170 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAH-------EK---GLYD------------------------ 170 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHH-------hc---cchH------------------------
Confidence 3569999999999999999998889999999999997554 11 1221
Q ss_pred CCCCCCCCceeEEecc---cccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe---cCcchhhhh
Q 015160 269 PASAGITEGFSMCGGD---FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---GPLLYHFAD 342 (412)
Q Consensus 269 p~~~~~~~~~s~~~GD---F~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~---GPLlyh~~~ 342 (412)
.+.++| |++.. ..+.||.|+..=.+.-.-++...+..+..+|+|||+|+-. +|--+.|.-
T Consensus 171 ----------~L~~Aea~~Fl~~~----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 171 ----------TLYVAEAVLFLEDL----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred ----------HHHHHHHHHHhhhc----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 112223 44321 2578999986532222234556788889999999999841 111111110
Q ss_pred ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe-e-ccccCCCCcccccccccceEEEEEEEc
Q 015160 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-T-IETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 343 ~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~-~-i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
.|...+-=+..-+++++...||+++..+ + +... ...| -.-..+||||+
T Consensus 237 ----~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d-~g~p-------v~G~L~iark~ 286 (287)
T COG4976 237 ----GPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD-AGEP-------VPGILVIARKK 286 (287)
T ss_pred ----chhhhhccchHHHHHHHHhcCceEEEeecccchhh-cCCC-------CCCceEEEecC
Confidence 1211233478889999999999999854 2 2221 1111 14567788886
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-08 Score=91.23 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=63.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..++++.. .|+|+|+|..| . +
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~--~---------------------------------- 71 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P--I---------------------------------- 71 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c--C----------------------------------
Confidence 677999999999999999988753 59999999854 0 0
Q ss_pred CCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEec--------ccCC---hhhHHHHHHHHHHhccCCcE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF--------FIDT---AHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~-----~~~~~~~fD~VvT~F--------FIDt---a~Ni~~yl~~I~~~LKPGG~ 329 (412)
.++.++.+|+.+... .....+.||+|++.. .++. ..++.+.++.++++|||||+
T Consensus 72 ----------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 72 ----------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred ----------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCE
Confidence 013445556554210 001246799998632 1221 12346789999999999999
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
++-
T Consensus 142 lvi 144 (188)
T TIGR00438 142 FVV 144 (188)
T ss_pred EEE
Confidence 985
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=96.85 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|||.|.++.+++++ +. .|+++|++..|+..|+--+.. . +. .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~------------~---~~---------~----- 126 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE------------I---AG---------G----- 126 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH------------h---cc---------c-----
Confidence 4569999999999999999987 54 799999999999776622210 0 00 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
.....++.++.+|..++-. ...++||+|+.-.+-.. +..+ .++++.++++|||||+++.
T Consensus 127 -----~~~d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 127 -----AYDDPRVELVIGDGIKFVA--ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred -----cccCCceEEEECchHHHHh--hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0002347889999887533 23578999987543221 1122 5789999999999999985
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.2e-08 Score=99.11 Aligned_cols=144 Identities=14% Similarity=0.112 Sum_probs=93.0
Q ss_pred CcchHHHHHHHHHHHhcCcccChhHH----------hhchHHHHH--HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH
Q 015160 142 LADVDKVRCIIRNIVRDWAAEGKTER----------DQCYKPILE--ELDALFPNRSKESPPACLVPGAGLGRLALEISH 209 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RDWS~eG~~ER----------~~~y~pIl~--~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~ 209 (412)
+..+..++.+|..++--|..+-..+. +..| +++ .+.+.+.. ..+..|||+|||+|+.+..+|+
T Consensus 68 p~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~---~~~p~vLEIGcGsG~~ll~lA~ 142 (390)
T PRK14121 68 PSKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPY--ILDIDNFLDFISK---NQEKILIEIGFGSGRHLLYQAK 142 (390)
T ss_pred ccchHHHHHHHHHHHHHhhccccccccccccccccccccc--cCCHHHHHHHhcC---CCCCeEEEEcCcccHHHHHHHH
Confidence 45567778888888777743211111 1111 222 23333322 2456899999999999999999
Q ss_pred c--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEeccccc
Q 015160 210 L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE 287 (412)
Q Consensus 210 ~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~e 287 (412)
+ +..+.|+|++..|+..+..-. ... + ..++.++.+|+.+
T Consensus 143 ~~P~~~~iGIEI~~~~i~~a~~ka---~~~-----------------------g-------------L~NV~~i~~DA~~ 183 (390)
T PRK14121 143 NNPNKLFIGIEIHTPSIEQVLKQI---ELL-----------------------N-------------LKNLLIINYDARL 183 (390)
T ss_pred hCCCCCEEEEECCHHHHHHHHHHH---HHc-----------------------C-------------CCcEEEEECCHHH
Confidence 8 578999999999986554111 000 0 1247889999876
Q ss_pred ccCCCCCCCCccEEEEecccCC-h--hh----HHHHHHHHHHhccCCcEEE
Q 015160 288 VYSDPSQVGAWDAVVTCFFIDT-A--HN----IVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 288 ly~~~~~~~~fD~VvT~FFIDt-a--~N----i~~yl~~I~~~LKPGG~wI 331 (412)
+.. ....+++|.|+..|- |. . .. ..++++.++++|||||.|.
T Consensus 184 ll~-~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 184 LLE-LLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred hhh-hCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 532 123689999987653 22 1 11 1478999999999999987
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.2e-08 Score=88.73 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=65.5
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE--ecCc-------chhhh-h-c--
Q 015160 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPL-------LYHFA-D-L-- 343 (412)
Q Consensus 277 ~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GPL-------lyh~~-~-~-- 343 (412)
+++++.||+.++. ...++||+|++.|-+....|..+.+++++++|||||.++. +++. ++.+. . .
T Consensus 27 ~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T PLN02232 27 CIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVV 103 (160)
T ss_pred ceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHh
Confidence 4789999998863 3467999999888676667889999999999999999973 2221 00000 0 0
Q ss_pred -----cCCCCCc-------ccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 344 -----YGQEDEM-------SIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 344 -----~g~~~~~-------~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+..... .-.++.+|+.++++++||+.+...
T Consensus 104 ~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 104 PVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred hhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 0100000 113599999999999999977643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-08 Score=87.73 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=66.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++.++++++..|+|+|++..|+..++-.+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~----------------------------------- 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA----------------------------------- 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-----------------------------------
Confidence 456899999999999999999999999999999998654411100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID-ta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..++.++.+|+.++.. ..+.||.|+++.-.. +.+-+..+++. ..+.+||+++
T Consensus 58 ------~~~v~ii~~D~~~~~~---~~~~~d~vi~n~Py~~~~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 58 ------ADNLTVIHGDALKFDL---PKLQPYKVVGNLPYNISTPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred ------CCCEEEEECchhcCCc---cccCCCEEEECCCcccHHHHHHHHHhc--CCCcceEEEE
Confidence 0136789999988643 234699999874222 22223333332 2245777776
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=91.99 Aligned_cols=122 Identities=14% Similarity=0.212 Sum_probs=81.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~ 247 (412)
.|...+..+...... .+.+||++|||+|.++.++++.+ -.|+++|++..|+..++-.+... +
T Consensus 57 ~y~e~l~~~~l~~~~----~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~------------~ 120 (270)
T TIGR00417 57 IYHEMIAHVPLFTHP----NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL------------A 120 (270)
T ss_pred HHHHHhhhhHhhcCC----CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh------------c
Confidence 455555554443321 34499999999999999998885 47999999999987666322100 0
Q ss_pred ccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhh--HHHHHHHHHHh
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRI 323 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~N--i~~yl~~I~~~ 323 (412)
. .+. ..++.+..+|..++.. ...++||+|+.-.+ .....+ -.++++.+.++
T Consensus 121 ---~---------~~~-----------~~~v~i~~~D~~~~l~--~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~ 175 (270)
T TIGR00417 121 ---G---------SYD-----------DPRVDLQIDDGFKFLA--DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKA 175 (270)
T ss_pred ---c---------ccc-----------CCceEEEECchHHHHH--hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHH
Confidence 0 000 1236677788776432 12478999987543 333344 35889999999
Q ss_pred ccCCcEEEE
Q 015160 324 LKDGGVWIN 332 (412)
Q Consensus 324 LKPGG~wIN 332 (412)
|||||+++.
T Consensus 176 L~pgG~lv~ 184 (270)
T TIGR00417 176 LNEDGIFVA 184 (270)
T ss_pred hCCCcEEEE
Confidence 999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=93.67 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChh-HHHHHH-c--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRL-ALEISH-L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL-a~eLA~-~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
.+.+||++|||-|.+ +.-+++ + +-.++|+|.++.|+..|+-.... .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~---------------------------- 172 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--D---------------------------- 172 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--c----------------------------
Confidence 567999999997755 444443 3 23699999999999877733210 0
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
+ ...+++.|..+|..++.. ..+.||+|++...++- .++-.++++.+++.|||||+++-
T Consensus 173 ~-------gL~~rV~F~~~Da~~~~~---~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 173 P-------DLSKRMFFHTADVMDVTE---SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred c-------CccCCcEEEECchhhccc---ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 0 123458999999988642 1468999988744442 36678999999999999999994
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-07 Score=92.53 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=91.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|||+|..+.++.+.+ -.|+++|++..|+.+|+. +|++..... . .
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-------------~~~L~~~~~-~-------~----- 203 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-------------VPELVSLNK-S-------A----- 203 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-------------ccccchhcc-c-------c-----
Confidence 45699999999999999999875 589999999999987761 111110000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC----hhhH--HHHHHHHHHhccCCcEEEEe-cCcchh
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AHNI--VEYIEIISRILKDGGVWINL-GPLLYH 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~Ni--~~yl~~I~~~LKPGG~wIN~-GPLlyh 339 (412)
....++.++.+|..++-. ...++||+|+.-+. |. +..+ .++++.+++.|||||+++.- +...++
T Consensus 204 ------~~DpRV~vvi~Da~~fL~--~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~ 274 (374)
T PRK01581 204 ------FFDNRVNVHVCDAKEFLS--SPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA 274 (374)
T ss_pred ------CCCCceEEEECcHHHHHH--hcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh
Confidence 012358889999988533 23568999987643 21 1122 46899999999999999862 211111
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..-...+...++++||....-..
T Consensus 275 -------------~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 275 -------------PLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred -------------HHHHHHHHHHHHHhCCceEEEEE
Confidence 01112367788899997765443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-07 Score=96.73 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|||+|.++.++++.+ -+|+++|+++.|+..++.- |+ +|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~-------------~~------------------l~~ 345 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS-------------PA------------------LRA 345 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC-------------Cc------------------chh
Confidence 45689999999999999999885 4899999999999776620 00 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-----HHHHHHHHHHhccCCcEEEE-ecCcchhh
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-----IVEYIEIISRILKDGGVWIN-LGPLLYHF 340 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-----i~~yl~~I~~~LKPGG~wIN-~GPLlyh~ 340 (412)
++... ....+++++.+|.++.-. ...++||+|+..+.-...+. -.++++.+.++|||||+++. .++..++
T Consensus 346 ~~~~~-~~dprv~vi~~Da~~~l~--~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~- 421 (521)
T PRK03612 346 LNGGA-LDDPRVTVVNDDAFNWLR--KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA- 421 (521)
T ss_pred hhccc-cCCCceEEEEChHHHHHH--hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc-
Confidence 00000 001347889999887432 12478999998754322111 13689999999999999984 3322111
Q ss_pred hhccCCCCCcccCCCHHHHHHHHHhCCC
Q 015160 341 ADLYGQEDEMSIELSLEDVKRVALHYGF 368 (412)
Q Consensus 341 ~~~~g~~~~~~ieLS~EEL~~ll~~~GF 368 (412)
. -...++.+.+++.||
T Consensus 422 ~------------~~~~~i~~~l~~~gf 437 (521)
T PRK03612 422 P------------KAFWSIEATLEAAGL 437 (521)
T ss_pred h------------HHHHHHHHHHHHcCC
Confidence 0 112478888889999
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=90.03 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
...-|||+|||+|--+-.|...|+...|+|+|..||..|.- . .+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~--------~----------------------e~e----- 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE--------R----------------------ELE----- 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH--------h----------------------hhh-----
Confidence 45689999999999999999999999999999999976541 0 010
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-----------ccCChhhHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-----------FIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-----------FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
=.++.+||-+ +.|+..++||.|++.- +=++..-+..+|.+.+.+||+|+..+- .
T Consensus 95 ---------gdlil~DMG~--GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~----Q 159 (270)
T KOG1541|consen 95 ---------GDLILCDMGE--GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL----Q 159 (270)
T ss_pred ---------cCeeeeecCC--CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE----E
Confidence 1345677775 3467789999988652 112334466789999999999999984 2
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHhCCCE
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFE 369 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFe 369 (412)
|--+ .+=..|-|.+-..++||-
T Consensus 160 fYpe----------n~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 160 FYPE----------NEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eccc----------chHHHHHHHHHHHhhccC
Confidence 2111 123456777777788884
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-07 Score=90.42 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|||.|.++..+++. +-.++++|+++.|+..++--.. .|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-------------------------------~~- 113 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE-------------------------------LP- 113 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC-------------------------------CC-
Confidence 3468999999999999999876 4679999999999977662110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh----hhHHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta----~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....++.++.||+.++.. ...++||+|+.-.|-... -.-.++++.+.++|+|||+++
T Consensus 114 ------~~~~rv~v~~~Da~~~l~--~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 114 ------ENGERFEVIEADGAEYIA--VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred ------CCCCceEEEECCHHHHHH--hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 001347889999887543 124689999865442211 123589999999999999997
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-08 Score=93.50 Aligned_cols=176 Identities=22% Similarity=0.270 Sum_probs=114.1
Q ss_pred HHHHHHhcCcccChhHHhhchHHHHHHHHhhCCC---CCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015160 151 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPN---RSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (412)
Q Consensus 151 ~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~---~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (412)
-++.+-|||.+--..... ..+.+++--++.+ +..+....++|+|||+|.++..|-..|. ..+-.|-|+.|+--
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 467788898763322222 2333333322211 1123456899999999999999999996 47889999999843
Q ss_pred HHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc
Q 015160 227 SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF 306 (412)
Q Consensus 227 s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF 306 (412)
++ .. ++ |.+ .++...+| .|.. ++.++++|.|++..-
T Consensus 111 ~~-------~~------------------qd-------p~i---------~~~~~v~D-EE~L--df~ens~DLiisSls 146 (325)
T KOG2940|consen 111 CR-------DA------------------QD-------PSI---------ETSYFVGD-EEFL--DFKENSVDLIISSLS 146 (325)
T ss_pred hh-------cc------------------CC-------Cce---------EEEEEecc-hhcc--cccccchhhhhhhhh
Confidence 22 11 00 111 26677777 2321 345799999999876
Q ss_pred cCChhhHHHHHHHHHHhccCCcEEEE--e-cCcchhhh---------hccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 307 IDTAHNIVEYIEIISRILKDGGVWIN--L-GPLLYHFA---------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 307 IDta~Ni~~yl~~I~~~LKPGG~wIN--~-GPLlyh~~---------~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
++=..++...+..+...|||.|+||. + |--||... ...|..|..+-.--..++-.++.++||.....
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 66666678999999999999999996 3 44455422 22233343332335678899999999998763
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.4e-07 Score=92.40 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=73.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..+.+.+.. +++.+|||+|||+|.++..+|++.- .|+|+|+|..|+..|+..+...
T Consensus 68 l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~---------------- 128 (322)
T PRK13943 68 LMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL---------------- 128 (322)
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 44445444432 2567999999999999999998642 5999999999998776332110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
+ ..++.++.||+.+... ..+.||+|+..+-+. ++ .+.+.+.|||||.+
T Consensus 129 ----------g-------------~~nV~~i~gD~~~~~~---~~~~fD~Ii~~~g~~---~i---p~~~~~~LkpgG~L 176 (322)
T PRK13943 129 ----------G-------------IENVIFVCGDGYYGVP---EFAPYDVIFVTVGVD---EV---PETWFTQLKEGGRV 176 (322)
T ss_pred ----------C-------------CCcEEEEeCChhhccc---ccCCccEEEECCchH---Hh---HHHHHHhcCCCCEE
Confidence 0 0136678888776432 236799998764332 22 34567899999998
Q ss_pred EE
Q 015160 331 IN 332 (412)
Q Consensus 331 IN 332 (412)
+.
T Consensus 177 vv 178 (322)
T PRK13943 177 IV 178 (322)
T ss_pred EE
Confidence 74
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-07 Score=87.82 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=82.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.++..|.+.. +..+||++|||+|.-+..||+. +-.|+++|++..++..|+..+...
T Consensus 58 ~~L~~l~~~~------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--------------- 116 (234)
T PLN02781 58 LFLSMLVKIM------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--------------- 116 (234)
T ss_pred HHHHHHHHHh------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 3555555543 4568999999999988877764 358999999999998777433211
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--C-CCCCCccEEEEecccCCh-hhHHHHHHHHHHhcc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--P-SQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 325 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~--~-~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LK 325 (412)
....++.++.||..+.... + ...++||+| |+|.. ++..+|++.+.++||
T Consensus 117 -----------------------gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V----fiDa~k~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 117 -----------------------GVDHKINFIQSDALSALDQLLNNDPKPEFDFA----FVDADKPNYVHFHEQLLKLVK 169 (234)
T ss_pred -----------------------CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE----EECCCHHHHHHHHHHHHHhcC
Confidence 1113478899998875210 0 013689998 66754 556799999999999
Q ss_pred CCcEEEEecCcchh
Q 015160 326 DGGVWINLGPLLYH 339 (412)
Q Consensus 326 PGG~wIN~GPLlyh 339 (412)
|||++|--. .+|+
T Consensus 170 ~GG~ii~dn-~l~~ 182 (234)
T PLN02781 170 VGGIIAFDN-TLWF 182 (234)
T ss_pred CCeEEEEEc-CCcC
Confidence 999988422 3443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-07 Score=92.39 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++...+..|. .|+++|+|..|+..++.-+.. + ++.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~----N----------------------gl~---- 269 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------KLD---- 269 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 457899999999999998887776 799999999999776622210 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cccCCh-------hhHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~--FFIDta-------~Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
..+++++.||+.++... ....++||+|+.. +|.... .+..++++...++|||||+++.+.
T Consensus 270 -------~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--- 339 (396)
T PRK15128 270 -------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--- 339 (396)
T ss_pred -------CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe---
Confidence 01378899998875310 0113589999865 554432 234566778889999999998521
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHh
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALH 365 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~ 365 (412)
. +-.++.+++++++.+
T Consensus 340 ----c--------s~~~~~~~f~~~v~~ 355 (396)
T PRK15128 340 ----C--------SGLMTSDLFQKIIAD 355 (396)
T ss_pred ----C--------CCcCCHHHHHHHHHH
Confidence 0 224666777766653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.8e-07 Score=98.09 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=92.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|+.|.. |+++|+|..|+..++.-+.. + ++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~----n----------------------g~~---- 587 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL----N----------------------GLS---- 587 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CCC----
Confidence 4579999999999999999999974 99999999999877632210 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC---------hhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT---------AHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt---------a~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
..++.++.+|+.++.. ...++||+|+.. +|... ..+..+++..+.++|||||+++-..-
T Consensus 588 -------~~~v~~i~~D~~~~l~--~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~- 657 (702)
T PRK11783 588 -------GRQHRLIQADCLAWLK--EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN- 657 (702)
T ss_pred -------ccceEEEEccHHHHHH--HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC-
Confidence 0237889999887532 113689999875 34321 23455678888999999999874210
Q ss_pred chhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe--eccccCCCCc
Q 015160 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK--TIETTYTTNP 384 (412)
Q Consensus 337 lyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~--~i~s~Y~~d~ 384 (412)
+-.++.+ .+++.+.||++.... ....-+..++
T Consensus 658 --------------~~~~~~~--~~~~~~~g~~~~~i~~~~~~~Dhp~~~ 691 (702)
T PRK11783 658 --------------KRGFKMD--EEGLAKLGLKAEEITAKTLPPDFARNP 691 (702)
T ss_pred --------------CccCChh--HHHHHhCCCeEEEEecCCCCCCCCCCc
Confidence 0112222 667778899887643 4444444433
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-06 Score=83.41 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 145 ~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
++..-.-.++=+..|.... ..-|+++|.+. | +...|-|.|||-++||..+ ..++.|...|+-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nP-------vd~iI~~l~~~-~-----~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNP-------VDVIIEWLKKR-P-----KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-H-------HHHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S---EEEEESS-S--
T ss_pred HHHHHHHHHHHHhcCCCCc-------HHHHHHHHHhc-C-----CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC--
Confidence 3555566777788898652 34567777643 2 3467889999999999664 46777877776430
Q ss_pred HHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 015160 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (412)
Q Consensus 225 ~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~ 304 (412)
| -..++.|+..+.. .+++.|+||.|
T Consensus 105 -------n---------------------------------------------~~Vtacdia~vPL---~~~svDv~Vfc 129 (219)
T PF05148_consen 105 -------N---------------------------------------------PRVTACDIANVPL---EDESVDVAVFC 129 (219)
T ss_dssp -------S---------------------------------------------TTEEES-TTS-S-----TT-EEEEEEE
T ss_pred -------C---------------------------------------------CCEEEecCccCcC---CCCceeEEEEE
Confidence 0 1246788877754 46899999999
Q ss_pred cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 305 FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 305 FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-|.- .|+.+||++.+|+|||||.+.-. | . .+-.-+.++..+.+++.||++....
T Consensus 130 LSLMG-Tn~~~fi~EA~RvLK~~G~L~IA-------E-V------~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 130 LSLMG-TNWPDFIREANRVLKPGGILKIA-------E-V------KSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp S---S-S-HHHHHHHHHHHEEEEEEEEEE-------E-E------GGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred hhhhC-CCcHHHHHHHHheeccCcEEEEE-------E-e------cccCcCHHHHHHHHHHCCCeEEecc
Confidence 87663 37999999999999999998631 1 0 0112277899999999999998854
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-06 Score=84.94 Aligned_cols=141 Identities=20% Similarity=0.200 Sum_probs=94.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
...++||+|+|-|..+..+|..--.|.+.|.|..|-. .|+. +.+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~----rL~~----kg~~v-------------------------- 139 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW----RLSK----KGFTV-------------------------- 139 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH----HHHh----CCCeE--------------------------
Confidence 5678999999999999999998888999999999952 2321 11211
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE--ecCcchhhhhccC-
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLYHFADLYG- 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GPLlyh~~~~~g- 345 (412)
+ |..++.. ...+||+|.+...||...+....|+.|++.|+|+|++|- +=|. -+|-...+
T Consensus 140 ------------l--~~~~w~~---~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~-~pyVE~~~g 201 (265)
T PF05219_consen 140 ------------L--DIDDWQQ---TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF-RPYVEFGGG 201 (265)
T ss_pred ------------E--ehhhhhc---cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc-cccEEcCCC
Confidence 1 1122322 135899998888999999999999999999999999985 2221 12322111
Q ss_pred C--CCC-------cccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 346 Q--EDE-------MSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 346 ~--~~~-------~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
. .|. ..+|=..+-+..+++.+||+++... ..+|.-.
T Consensus 202 ~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t--r~PYLcE 246 (265)
T PF05219_consen 202 KSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT--RLPYLCE 246 (265)
T ss_pred CCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe--ccCcccc
Confidence 1 121 1122233445578889999998754 3567543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.7e-07 Score=89.81 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||-|....-..+.+- .+.|+|+|..-|.-|+--.+...+... ++. ....+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~--------------~~~---~~~~f--- 121 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNN--------------SKQ---YRFDF--- 121 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT---------------HT---SEECC---
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccc--------------ccc---ccccc---
Confidence 678999999999998888888875 588999999998655533311111000 000 00011
Q ss_pred CCCCCCCCCceeEEeccccc-----ccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCcEEEEecCc--
Q 015160 268 HPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWINLGPL-- 336 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~e-----ly~~~~~~~~fD~VvT~F----FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL-- 336 (412)
...++.+|... .+. ....+||+|-+.| ...+.+.....|+.|.+.|||||+||...|-
T Consensus 122 ---------~a~f~~~D~f~~~l~~~~~--~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 122 ---------IAEFIAADCFSESLREKLP--PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp ---------EEEEEESTTCCSHHHCTSS--STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ---------hhheeccccccchhhhhcc--ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 13456666542 122 1236999986555 2567788889999999999999999953331
Q ss_pred --chhhhh---------------------c-----cC---------C-CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 337 --LYHFAD---------------------L-----YG---------Q-EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 337 --lyh~~~---------------------~-----~g---------~-~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
...... . +| . .+...+-..++-++++++++|++++...
T Consensus 191 ~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~ 266 (331)
T PF03291_consen 191 EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKK 266 (331)
T ss_dssp HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeC
Confidence 111100 0 01 0 0111233489999999999999999754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-07 Score=92.31 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|..+..+++++ ..|+|+|+|..|+..++..+.. . +
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~----~----------------------g----- 292 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR----L----------------------G----- 292 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-----
Confidence 56799999999999999999885 4899999999999766522210 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec------------ccCChhhH-------HHHHHHHHHhc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF------------FIDTAHNI-------VEYIEIISRIL 324 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F------------FIDta~Ni-------~~yl~~I~~~L 324 (412)
.++.++.+|+.++... ...++||.|+. |+ +..+..++ .+.|+.+.++|
T Consensus 293 ---------~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 293 ---------LKATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL 362 (427)
T ss_pred ---------CCeEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 0145677888764210 11367999984 22 11222333 36799999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHh-CCCEEEE
Q 015160 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 372 (412)
Q Consensus 325 KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~-~GFeii~ 372 (412)
||||+++-..--++ .+=+.+.+..++++ .+|+++.
T Consensus 363 kpGG~lvystcs~~-------------~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 363 KPGGTLLYATCSIL-------------PEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CCCCEEEEEeCCCC-------------hhhCHHHHHHHHHhCCCCEEec
Confidence 99999983110000 12244677777765 4787665
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=87.98 Aligned_cols=108 Identities=23% Similarity=0.235 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|||.|.++.++++.. -.|+.+|++..|+..|+--+ |.++ . +
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f------------~~~~---~---------~----- 141 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF------------PDLA---V---------G----- 141 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh------------hhhc---c---------c-----
Confidence 45799999999999999999984 37999999999997766221 1000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~N--i~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|.+++... ...++||+|+.-.+-. .+.. -.++++.++++|+|||+++.
T Consensus 142 ------~~dpRv~vi~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 142 ------FDDPRVNLHIGDGVEFLKN-APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred ------cCCCceEEEEChHHHHHhh-ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0123588999998764321 1146899998644321 1111 24789999999999999975
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.8e-06 Score=81.54 Aligned_cols=140 Identities=17% Similarity=0.191 Sum_probs=88.8
Q ss_pred CCCeEEEecCCCChhHHHH-HHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEI-SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eL-A~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
...++||.|||.||.+..| ...--.|.-+|.....+..|+--+.. . ..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~--~-------------------~~---------- 103 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK--D-------------------NP---------- 103 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC--G-------------------GC----------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc--c-------------------CC----------
Confidence 4579999999999999866 55544799999999999776622210 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEE---EecCcchhhhh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI---NLGPLLYHFAD 342 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wI---N~GPLlyh~~~ 342 (412)
.--.+.+.-+.++.+ ..++||+|.+-..+- |-.++++||+.....|+|||+.| |+..--+.
T Consensus 104 --------~v~~~~~~gLQ~f~P---~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~--- 169 (218)
T PF05891_consen 104 --------RVGEFYCVGLQDFTP---EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD--- 169 (218)
T ss_dssp --------CEEEEEES-GGG-------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE---
T ss_pred --------CcceEEecCHhhccC---CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc---
Confidence 002233333444432 247999999887542 45679999999999999999998 54332110
Q ss_pred ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+. ....++.-|.+.++++++++|+++++++
T Consensus 170 ~~D-~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 170 EFD-EEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EEE-TTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccC-CccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 111 1123788899999999999999999966
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-06 Score=92.05 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=71.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..++++ +..|+|+|+|..|+..++-.++.. ++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--------------------------g~--- 300 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--------------------------GI--- 300 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999998888764 458999999999997665322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---e----c--------ccCChhhH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C----F--------FIDTAHNI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~----F--------FIDta~Ni-------~~yl~~I~~~ 323 (412)
.++.++.+|+.++.. .++||+|+. | . +..+..++ .+.|..++++
T Consensus 301 ----------~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 136778889877532 468999984 1 1 11122223 2579999999
Q ss_pred ccCCcEEEE
Q 015160 324 LKDGGVWIN 332 (412)
Q Consensus 324 LKPGG~wIN 332 (412)
|||||++|-
T Consensus 367 lkpgG~lvy 375 (445)
T PRK14904 367 LKPGGVLVY 375 (445)
T ss_pred cCCCcEEEE
Confidence 999999983
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=98.09 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=88.8
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||+|||+|.++..||+++ ..|+|+|+|..|+..|+.-+.. + ...... .+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~----n-------------~l~~~~------~~~~ 175 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL----N-------------ALDDDG------LPVY 175 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-------------Cccccc------cccc
Confidence 4589999999999999999875 5899999999999877632211 0 000000 0000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------hh----------------------------
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------HN---------------------------- 312 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------~N---------------------------- 312 (412)
........+++.++.+|+.+... ....+||+||++= ||.+. +.
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~--~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCR--DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccEEEEECchhhhcc--ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 00000112358899999887532 1123799999983 44221 11
Q ss_pred ---HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHH-HHHHhCCCEEEEEe
Q 015160 313 ---IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVK-RVALHYGFEFEKEK 374 (412)
Q Consensus 313 ---i~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~-~ll~~~GFeii~e~ 374 (412)
+.+.++...++|||||+++- +|. --.+.+. +++++.||+.++.+
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEiG~------------------~q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNMGG------------------RPGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECc------------------cHHHHHHHHHHHHCCCCeeEEe
Confidence 13345666689999998873 332 1135777 69999999998754
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.3e-06 Score=76.61 Aligned_cols=122 Identities=24% Similarity=0.240 Sum_probs=89.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+++|+|||+|.++.|+|..|. +|+++|-+..++...+. |.. + +
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~--N~~-~---f-------------------------- 81 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER--NAA-R---F-------------------------- 81 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH--HHH-H---h--------------------------
Confidence 677999999999999999996664 79999999999865552 211 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
. .+|+.++.||.-+... ...++|+| ||--..++.+.|+.....|||||.+|-.
T Consensus 82 ------g-~~n~~vv~g~Ap~~L~---~~~~~dai----FIGGg~~i~~ile~~~~~l~~ggrlV~n------------- 134 (187)
T COG2242 82 ------G-VDNLEVVEGDAPEALP---DLPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVAN------------- 134 (187)
T ss_pred ------C-CCcEEEEeccchHhhc---CCCCCCEE----EECCCCCHHHHHHHHHHHcCcCCeEEEE-------------
Confidence 0 2358899999877543 12379988 5665578999999999999999999831
Q ss_pred CCCcccCC-CHHHHHHHHHhCCC-EEEEE
Q 015160 347 EDEMSIEL-SLEDVKRVALHYGF-EFEKE 373 (412)
Q Consensus 347 ~~~~~ieL-S~EEL~~ll~~~GF-eii~e 373 (412)
.+.| +.-.+.+.+++.|| +++..
T Consensus 135 ----aitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 135 ----AITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred ----eecHHHHHHHHHHHHHcCCceEEEE
Confidence 1111 34455667888999 66653
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-06 Score=91.52 Aligned_cols=124 Identities=23% Similarity=0.244 Sum_probs=82.2
Q ss_pred hHHhhchHH-HHHHHHhhCCCCCC-CCCCeEEEecCCCChhHHHHHHcC------CeEEEEeCCHHHHHHHHhhhhcccc
Q 015160 165 TERDQCYKP-ILEELDALFPNRSK-ESPPACLVPGAGLGRLALEISHLG------FISQGNEFSYYMMICSSFILNHTET 236 (412)
Q Consensus 165 ~ER~~~y~p-Il~~L~~~~p~~~~-~~~~rVLvPGCGlGRLa~eLA~~G------f~V~GnD~S~~ML~~s~filn~~~~ 236 (412)
..|-.+|.. |.+.|......... .+...|||+|||+|-|+...++.| ..|.++|-+..+..+.+.+++.
T Consensus 160 ~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~--- 236 (448)
T PF05185_consen 160 PVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA--- 236 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh---
Confidence 334344443 33445554432211 135689999999999998887776 6899999998777655433221
Q ss_pred cccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhH
Q 015160 237 AGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNI 313 (412)
Q Consensus 237 ~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni 313 (412)
+.+ .+++.++.||++++.. ..+.|+||+= .|++.. -.
T Consensus 237 -n~w----------------------------------~~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~ 276 (448)
T PF05185_consen 237 -NGW----------------------------------GDKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LS 276 (448)
T ss_dssp -TTT----------------------------------TTTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SH
T ss_pred -cCC----------------------------------CCeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cC
Confidence 111 2348899999999865 3699999986 477765 46
Q ss_pred HHHHHHHHHhccCCcEEE
Q 015160 314 VEYIEIISRILKDGGVWI 331 (412)
Q Consensus 314 ~~yl~~I~~~LKPGG~wI 331 (412)
.+.|....|.|||||+.|
T Consensus 277 pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 277 PECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHGGGGEEEEEEEE
T ss_pred HHHHHHHHhhcCCCCEEe
Confidence 688999999999999998
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=81.46 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCcccCh--------------hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-
Q 015160 146 DKVRCIIRNIVRDWAAEGK--------------TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL- 210 (412)
Q Consensus 146 ~kv~s~L~q~~RDWS~eG~--------------~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~- 210 (412)
..|..+++.+-|++--... .++...-+.+...+.+.+.- +++.+||++|||+|+++.-||.+
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lv 94 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLV 94 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhc
Confidence 5677788888777643210 12222334456666666542 37789999999999999999988
Q ss_pred C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc
Q 015160 211 G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 288 (412)
Q Consensus 211 G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~el 288 (412)
| ..|+++|....++..|+-.|.... ..++.+..||...-
T Consensus 95 g~~g~Vv~vE~~~~l~~~A~~~l~~~~---------------------------------------~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 95 GPVGRVVSVERDPELAERARRNLARLG---------------------------------------IDNVEVVVGDGSEG 135 (209)
T ss_dssp STTEEEEEEESBHHHHHHHHHHHHHHT---------------------------------------THSEEEEES-GGGT
T ss_pred CccceEEEECccHHHHHHHHHHHHHhc---------------------------------------cCceeEEEcchhhc
Confidence 3 369999999999887775553210 11478899997664
Q ss_pred cCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecC
Q 015160 289 YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGP 335 (412)
Q Consensus 289 y~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-~GP 335 (412)
+. ..+.||.|+...-....+ ..+.+.||+||++|. +++
T Consensus 136 ~~---~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 136 WP---EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp TG---GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEESS
T ss_pred cc---cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEcc
Confidence 43 357899998776655433 346678999999997 553
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.8e-06 Score=79.10 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=117.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhccccccccccccccccc-------CCCCCcccCc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN-------CNSLSDSDQL 259 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~-------sn~~s~~~ql 259 (412)
.+..+||+||-.|-|+..+|+. |- .|.|+|+....+--|+.-+.+-....-.+.--|++++ |+ .+..+..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-ccccccc
Confidence 4567999999999999999987 43 5899999999987777444322110000000011111 11 1111111
Q ss_pred cccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccC---ChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 260 RPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FID---TAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 260 r~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FID---ta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
-...+||... -...|..+...||++.- ...||+|++.- .|+ -.+-+..+|..|+++|.|||++| +
T Consensus 137 ~t~~~p~n~~---f~~~n~vle~~dfl~~~-----~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-v 207 (288)
T KOG2899|consen 137 FTTDFPDNVW---FQKENYVLESDDFLDMI-----QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-V 207 (288)
T ss_pred ccccCCcchh---cccccEEEecchhhhhc-----cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-E
Confidence 1223333211 12345777777888543 47899998653 333 23559999999999999999999 5
Q ss_pred cCcchhh-hhc------cCCCCCcccCCCHHHHHHHHHh--CCCEEEEEe-eccccCCCCcccccccccceEEEEEEEcC
Q 015160 334 GPLLYHF-ADL------YGQEDEMSIELSLEDVKRVALH--YGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFWTMRKKS 403 (412)
Q Consensus 334 GPLlyh~-~~~------~g~~~~~~ieLS~EEL~~ll~~--~GFeii~e~-~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~ 403 (412)
-|--|.- ... .+ .....+.|..|....++.+ .||+-.+.- .+.+.|.+ .+.....+-+|+.
T Consensus 208 EPQpWksY~kaar~~e~~~-~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~sk--------gf~R~i~~y~Kk~ 278 (288)
T KOG2899|consen 208 EPQPWKSYKKAARRSEKLA-ANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASK--------GFDRPILLYRKKL 278 (288)
T ss_pred cCCchHHHHHHHHHHHHhh-cCccceecCHHHHHhhhhhhhhheeeeccccccccccCc--------cccceeeeeeccC
Confidence 6665642 111 01 1113578999999998885 588776644 35555543 2334444556654
Q ss_pred cc
Q 015160 404 VT 405 (412)
Q Consensus 404 ~~ 405 (412)
.+
T Consensus 279 ~~ 280 (288)
T KOG2899|consen 279 HP 280 (288)
T ss_pred CC
Confidence 33
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.2e-06 Score=80.81 Aligned_cols=119 Identities=24% Similarity=0.262 Sum_probs=83.0
Q ss_pred eEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+|||+|||+|-+|.-||+.+- .|+|+|+|...|.+|+- |.. . + +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~--Na~-~-~----------------------~-------- 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE--NAE-R-N----------------------G-------- 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH--HHH-H-c----------------------C--------
Confidence 799999999999999999986 89999999999988862 211 0 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------------------------hhHHHHHHHHHHhc
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIISRIL 324 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------------~Ni~~yl~~I~~~L 324 (412)
. .++.++.+|.++-. .++||+||++= ||... .-+...+..+.+.|
T Consensus 159 ----l-~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 159 ----L-VRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred ----C-ccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 0 12445666655432 35899998872 44432 12345677788899
Q ss_pred cCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCC-CEEEE
Q 015160 325 KDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEK 372 (412)
Q Consensus 325 KPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~G-Feii~ 372 (412)
+|||+++- .| .-..+++++++.+.| |..+.
T Consensus 229 ~~~g~l~le~g------------------~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 229 KPGGVLILEIG------------------LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred CCCcEEEEEEC------------------CCcHHHHHHHHHhcCCceEEE
Confidence 99998873 11 123678999999999 55544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=83.01 Aligned_cols=111 Identities=27% Similarity=0.326 Sum_probs=81.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..|-+.. +..+||++|+|+|.-+..||+. +-.|+.+|.+..+...|+-.+..+
T Consensus 36 lL~~l~~~~------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a---------------- 93 (205)
T PF01596_consen 36 LLQMLVRLT------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA---------------- 93 (205)
T ss_dssp HHHHHHHHH------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhc------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc----------------
Confidence 555555543 4569999999999999999974 569999999999998877544322
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKP 326 (412)
....++.+..||..++-.. ....++||.| |||.. .+-.+|++.+.++|+|
T Consensus 94 ----------------------g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V----FiDa~K~~y~~y~~~~~~ll~~ 147 (205)
T PF01596_consen 94 ----------------------GLDDRIEVIEGDALEVLPELANDGEEGQFDFV----FIDADKRNYLEYFEKALPLLRP 147 (205)
T ss_dssp ----------------------TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE----EEESTGGGHHHHHHHHHHHEEE
T ss_pred ----------------------CCCCcEEEEEeccHhhHHHHHhccCCCceeEE----EEcccccchhhHHHHHhhhccC
Confidence 1123478899998874320 1113689998 77865 4577899999999999
Q ss_pred CcEEEE
Q 015160 327 GGVWIN 332 (412)
Q Consensus 327 GG~wIN 332 (412)
||+.|-
T Consensus 148 ggvii~ 153 (205)
T PF01596_consen 148 GGVIIA 153 (205)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999994
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=89.78 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=71.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..+|.+ +..|+|+|+|..||..++-.+... ++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--------------------------g~--- 287 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--------------------------KL--- 287 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999998886 568999999999997665332210 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---ccCChh---------hH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FIDTAH---------NI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F---FIDta~---------Ni-------~~yl~~I~~~ 323 (412)
.++.+..+|..++.. ...++||.|+. |. .+...+ ++ .+.|+.++++
T Consensus 288 ----------~~v~~~~~Da~~l~~--~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 288 ----------SSIEIKIADAERLTE--YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred ----------CeEEEEECchhhhhh--hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125678888876531 12468999985 21 121111 22 4568999999
Q ss_pred ccCCcEEE
Q 015160 324 LKDGGVWI 331 (412)
Q Consensus 324 LKPGG~wI 331 (412)
|||||++|
T Consensus 356 LkpGG~Lv 363 (431)
T PRK14903 356 LEKGGILL 363 (431)
T ss_pred cCCCCEEE
Confidence 99999987
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-06 Score=74.89 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=73.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCCh-hHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGR-LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGR-La~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
.+-++|.++++.. ++.+|||+|||.|. +|..|+++|++|+|+|+++..+..++ +
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-------~--------------- 57 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAK-------K--------------- 57 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------H---------------
Confidence 4667788877654 45789999999996 99999999999999999998754222 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
..+..+.+|.++... .-.+.+|+|.+ |-..+.+..+|-.+++-+.-
T Consensus 58 ------------------------~~~~~v~dDlf~p~~--~~y~~a~liys---irpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 58 ------------------------LGLNAFVDDLFNPNL--EIYKNAKLIYS---IRPPRDLQPFILELAKKINV 103 (134)
T ss_pred ------------------------hCCeEEECcCCCCCH--HHHhcCCEEEE---eCCCHHHHHHHHHHHHHcCC
Confidence 013556777765321 22357899977 66677788888888876643
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-06 Score=83.81 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=83.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..|.+.. +..+||++|+|+|.-+..+|+. +-.|+++|.+..++..|+-.+..+
T Consensus 109 lL~~L~~~~------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a---------------- 166 (278)
T PLN02476 109 LLAMLVQIL------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA---------------- 166 (278)
T ss_pred HHHHHHHhc------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4569999999999999999973 346999999999988776433211
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKP 326 (412)
....++.++.||..+.-.. ....++||+| |||.. .+-.+|++.+.++|||
T Consensus 167 ----------------------Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V----FIDa~K~~Y~~y~e~~l~lL~~ 220 (278)
T PLN02476 167 ----------------------GVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA----FVDADKRMYQDYFELLLQLVRV 220 (278)
T ss_pred ----------------------CCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1123478899998874310 0013689987 77866 4577999999999999
Q ss_pred CcEEEEecCcchh
Q 015160 327 GGVWINLGPLLYH 339 (412)
Q Consensus 327 GG~wIN~GPLlyh 339 (412)
||++|- -..+|+
T Consensus 221 GGvIV~-DNvL~~ 232 (278)
T PLN02476 221 GGVIVM-DNVLWH 232 (278)
T ss_pred CcEEEE-ecCccC
Confidence 999983 235565
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4e-06 Score=87.56 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=71.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++..+... ++
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--------------------------g~--- 300 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--------------------------GL--- 300 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 4578999999999999999986 358999999999997665322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---ccC---------ChhhH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FID---------TAHNI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---F---FID---------ta~Ni-------~~yl~~I~~~ 323 (412)
.++.++.+|+.++.. + ..++||+|+.- . .+. +..++ .+.|+.+.++
T Consensus 301 ----------~~v~~~~~D~~~~~~-~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 301 ----------TNIETKALDARKVHE-K-FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY 368 (444)
T ss_pred ----------CeEEEEeCCcccccc-h-hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 126788899877531 1 12689999852 1 111 11222 3579999999
Q ss_pred ccCCcEEE
Q 015160 324 LKDGGVWI 331 (412)
Q Consensus 324 LKPGG~wI 331 (412)
|||||.+|
T Consensus 369 LkpGG~lv 376 (444)
T PRK14902 369 LKKGGILV 376 (444)
T ss_pred cCCCCEEE
Confidence 99999998
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.7e-06 Score=82.01 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 146 DKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 146 ~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+-.-.-.++=|.-|.... ...|++.|... | ...-|-|.|||-+++|. ..-..|...|+-.
T Consensus 150 dlYH~gfr~QV~kWP~nP-------ld~ii~~ik~r-~-----~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 150 DLYHAGFRSQVKKWPENP-------LDVIIRKIKRR-P-----KNIVIADFGCGEAKIAS---SERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHHHHHHHHHhCCCCh-------HHHHHHHHHhC-c-----CceEEEecccchhhhhh---ccccceeeeeeec----
Confidence 333344455566787652 33477777764 2 45678899999999975 2222333333211
Q ss_pred HHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec
Q 015160 226 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 305 (412)
Q Consensus 226 ~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F 305 (412)
.+-.+++.||+.+.. .+++.|++|.|.
T Consensus 210 --------------------------------------------------~~~~V~~cDm~~vPl---~d~svDvaV~CL 236 (325)
T KOG3045|consen 210 --------------------------------------------------VNERVIACDMRNVPL---EDESVDVAVFCL 236 (325)
T ss_pred --------------------------------------------------CCCceeeccccCCcC---ccCcccEEEeeH
Confidence 012457789998654 579999999988
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 306 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 306 FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-|.- .|+.++|++++|+|||||+|--. -+ .+-.-+.-.+.+.++.+||++.+..
T Consensus 237 SLMg-tn~~df~kEa~RiLk~gG~l~IA-Ev-------------~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 237 SLMG-TNLADFIKEANRILKPGGLLYIA-EV-------------KSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred hhhc-ccHHHHHHHHHHHhccCceEEEE-eh-------------hhhcccHHHHHHHHHHcCCeeeehh
Confidence 7653 47999999999999999987420 01 1222345568889999999998754
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=75.85 Aligned_cols=155 Identities=20% Similarity=0.185 Sum_probs=106.5
Q ss_pred chHHHHHHHHhhCCC-CCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhccccccccccccccc
Q 015160 170 CYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~-~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~ 247 (412)
+-..++++|....-. ...+...++|++||=....+.. ..+ |+|+.+|+.. . .
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-~------------~----------- 84 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-Q------------H----------- 84 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC-C------------C-----------
Confidence 345677888776532 2222458999999965444332 233 5677777654 0 0
Q ss_pred ccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~L 324 (412)
-.+.+.||.+...+....+.||+|+... |+.++...-+.++.+++.|
T Consensus 85 ------------------------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL 134 (219)
T PF11968_consen 85 ------------------------------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL 134 (219)
T ss_pred ------------------------------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 1346789998654323468999998775 7888888889999999999
Q ss_pred cCCcE-----EEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEE
Q 015160 325 KDGGV-----WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTM 399 (412)
Q Consensus 325 KPGG~-----wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~Va 399 (412)
||+|. +.-+-|+--+-. +--++.+-++.+++..||+.++.+. .=+-+||..
T Consensus 135 ~~~g~~~~~~LFlVlP~~Cv~N---------SRy~~~~~l~~im~~LGf~~~~~~~---------------~~Kl~y~l~ 190 (219)
T PF11968_consen 135 KPPGLSLFPSLFLVLPLPCVTN---------SRYMTEERLREIMESLGFTRVKYKK---------------SKKLAYWLF 190 (219)
T ss_pred CCCCccCcceEEEEeCchHhhc---------ccccCHHHHHHHHHhCCcEEEEEEe---------------cCeEEEEEE
Confidence 99999 655666644321 3468899999999999999998652 115677777
Q ss_pred EEcCc
Q 015160 400 RKKSV 404 (412)
Q Consensus 400 rK~~~ 404 (412)
||...
T Consensus 191 r~~~~ 195 (219)
T PF11968_consen 191 RKSGK 195 (219)
T ss_pred eecCC
Confidence 77643
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.1e-06 Score=81.10 Aligned_cols=101 Identities=27% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++..++.. ++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--------------------------g~--- 121 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--------------------------GV--- 121 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999875 237999999999997665332210 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---cc---------CChhhH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FI---------DTAHNI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F---FI---------Dta~Ni-------~~yl~~I~~~ 323 (412)
.++.++.+|...+.. ..+.||+|+. |. .+ .+..++ .+.|+.+.++
T Consensus 122 ----------~~v~~~~~D~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 188 (264)
T TIGR00446 122 ----------LNVAVTNFDGRVFGA---AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA 188 (264)
T ss_pred ----------CcEEEecCCHHHhhh---hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125667777665422 2356999974 22 11 112222 3589999999
Q ss_pred ccCCcEEE
Q 015160 324 LKDGGVWI 331 (412)
Q Consensus 324 LKPGG~wI 331 (412)
|||||++|
T Consensus 189 lkpgG~lv 196 (264)
T TIGR00446 189 LKPGGVLV 196 (264)
T ss_pred cCCCCEEE
Confidence 99999987
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.1e-06 Score=81.42 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=101.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
|+.+.+.+.-- ...+.+.+|||-.-|+|+.|.+-+++|. .|..+|-.+.-|..| ++-||-+
T Consensus 119 P~~Dt~~Kv~~-V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-------------~lNPwSr---- 180 (287)
T COG2521 119 PLEDTLAKVEL-VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-------------KLNPWSR---- 180 (287)
T ss_pred cHHHHHhhhhe-eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-------------ccCCCCc----
Confidence 55555554221 1123578999999999999999999999 899999999877432 3445522
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCc
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
+- .. ..+.++.||..++-. .+.+++||+|+-- |-+.+.---.++.++++|+|||||
T Consensus 181 ----~l--~~--------------~~i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgG 239 (287)
T COG2521 181 ----EL--FE--------------IAIKIILGDAYEVVK-DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGG 239 (287)
T ss_pred ----cc--cc--------------cccEEecccHHHHHh-cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCC
Confidence 11 01 126789999888654 2457889999853 445553334578999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 329 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.+.. |-...|.. -....+ ...+.+.|.++||+.++.
T Consensus 240 rlFH-------YvG~Pg~r-yrG~d~-~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 240 RLFH-------YVGNPGKR-YRGLDL-PKGVAERLRRVGFEVVKK 275 (287)
T ss_pred cEEE-------EeCCCCcc-cccCCh-hHHHHHHHHhcCceeeee
Confidence 9874 32221110 001122 356777888999997663
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.2e-06 Score=81.53 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+.+|||+|||+|.++..||++|..|+|+|+|..|+..|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 468999999999999999999999999999999997766
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.4e-06 Score=85.59 Aligned_cols=124 Identities=15% Similarity=0.253 Sum_probs=80.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. + .
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 343 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR----N----------------------G------- 343 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 456999999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChh-hHHHHHHHHHHhccCCcE-EEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGGV-WINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~-Ni~~yl~~I~~~LKPGG~-wIN~GPLlyh~~~~~g 345 (412)
..++.+.++|+.+... .+...++||+|+. |... .+.+.++.+.+ |+|+++ +|...|...
T Consensus 344 ------~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~----dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tl------- 405 (443)
T PRK13168 344 ------LDNVTFYHANLEEDFTDQPWALGGFDKVLL----DPPRAGAAEVMQALAK-LGPKRIVYVSCNPATL------- 405 (443)
T ss_pred ------CCceEEEEeChHHhhhhhhhhcCCCCEEEE----CcCCcChHHHHHHHHh-cCCCeEEEEEeChHHh-------
Confidence 0137789999876421 1112357999964 4321 13455666666 566665 455555321
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-|+..+ .+.||++.+-.
T Consensus 406 ----------aRDl~~L-~~~gY~l~~i~ 423 (443)
T PRK13168 406 ----------ARDAGVL-VEAGYRLKRAG 423 (443)
T ss_pred ----------hccHHHH-hhCCcEEEEEE
Confidence 1233333 35699999865
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=80.67 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=78.2
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+.|.+.+|.. ...+|||+|||.|-|+..||++.= .++-+|.|+..+..|+.-+.. +.
T Consensus 148 ~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----N~-------------- 206 (300)
T COG2813 148 RLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----NG-------------- 206 (300)
T ss_pred HHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----cC--------------
Confidence 4455566543 345999999999999999999974 899999999999888733310 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc--cCChhhH-HHHHHHHHHhccCCc
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHNI-VEYIEIISRILKDGG 328 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FF--IDta~Ni-~~yl~~I~~~LKPGG 328 (412)
.++..+...|. |.. ..++||+|+|+ |. .++..++ .+.|+...+.|++||
T Consensus 207 ---------------------~~~~~v~~s~~---~~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 207 ---------------------VENTEVWASNL---YEP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred ---------------------CCccEEEEecc---ccc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence 01112344443 321 24599999998 53 4454443 378999999999999
Q ss_pred EEEE--ecCcchh
Q 015160 329 VWIN--LGPLLYH 339 (412)
Q Consensus 329 ~wIN--~GPLlyh 339 (412)
-+-- .|.|-|.
T Consensus 261 eL~iVan~~l~y~ 273 (300)
T COG2813 261 ELWIVANRHLPYE 273 (300)
T ss_pred EEEEEEcCCCChH
Confidence 7632 2545443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=78.22 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+.+.+.. .++.+|||+|||+|.++..|++++..|+|+|++..|+..++
T Consensus 17 ~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~ 68 (258)
T PRK14896 17 VVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLR 68 (258)
T ss_pred HHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 55555554432 25678999999999999999999999999999999986554
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.9e-06 Score=76.59 Aligned_cols=39 Identities=23% Similarity=0.005 Sum_probs=33.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~ 228 (412)
+.+|||+|||+|.++.+++.+| -.|+++|.+..++..++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 4589999999999999866666 47999999999987665
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-05 Score=77.46 Aligned_cols=118 Identities=23% Similarity=0.214 Sum_probs=86.4
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhccccccccccccc
Q 015160 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (412)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~ 245 (412)
..|++=..+|-.+.. -.++.+||+.|.|.|.|+..||.. | -+|+..|+-..++-.|+.-++..
T Consensus 77 iIyPKD~~~I~~~~g---i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~----------- 142 (256)
T COG2519 77 IIYPKDAGYIVARLG---ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF----------- 142 (256)
T ss_pred eecCCCHHHHHHHcC---CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----------
Confidence 455555555555543 237889999999999999999952 3 37999999999998877444211
Q ss_pred ccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 015160 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (412)
Q Consensus 246 i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LK 325 (412)
...+++.+..+|+.+... .+.||+| |||.. +.-++|+.++++||
T Consensus 143 ---------------------------~l~d~v~~~~~Dv~~~~~----~~~vDav----~LDmp-~PW~~le~~~~~Lk 186 (256)
T COG2519 143 ---------------------------GLGDRVTLKLGDVREGID----EEDVDAV----FLDLP-DPWNVLEHVSDALK 186 (256)
T ss_pred ---------------------------ccccceEEEecccccccc----ccccCEE----EEcCC-ChHHHHHHHHHHhC
Confidence 111235667799888543 3489988 57765 47799999999999
Q ss_pred CCcEEEEecCc
Q 015160 326 DGGVWINLGPL 336 (412)
Q Consensus 326 PGG~wIN~GPL 336 (412)
|||.++-+-|.
T Consensus 187 pgg~~~~y~P~ 197 (256)
T COG2519 187 PGGVVVVYSPT 197 (256)
T ss_pred CCcEEEEEcCC
Confidence 99999976663
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.1e-06 Score=79.09 Aligned_cols=124 Identities=17% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL---------G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---------G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ 257 (412)
...||+..||++|--++-||.. + +.+.|.|+|..+|..|+- .+||-- ...+. . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-----------G~Y~~~-~~~~~-~-~~ 96 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-----------GIYPER-SLRGL-P-PA 96 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-----------TEEEGG-GGTTS---HH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-----------CCCCHH-HHhhh-H-HH
Confidence 5689999999999876655532 3 689999999999987761 122210 00000 0 00
Q ss_pred Ccccccc-CCCC-CCC--CCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEE
Q 015160 258 QLRPVSI-PDIH-PAS--AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 258 qlr~v~i-PDv~-p~~--~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
.++. -| +... ... ......+.|...|..+.+. ..+.||+|++-. |++.. ...+.++.+++.|+|||++
T Consensus 97 ~~~r-yf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~---~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 97 YLRR-YFTERDGGGYRVKPELRKMVRFRRHNLLDPDP---PFGRFDLIFCRNVLIYFDPE-TQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp HHHH-HEEEE-CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HH-HHHHHHHHHGGGEEEEEEE
T ss_pred HHHH-hccccCCCceeEChHHcCceEEEecccCCCCc---ccCCccEEEecCEEEEeCHH-HHHHHHHHHHHHcCCCCEE
Confidence 0000 00 0000 000 0123458999999888222 358999998763 55544 3678999999999999999
Q ss_pred E
Q 015160 331 I 331 (412)
Q Consensus 331 I 331 (412)
+
T Consensus 172 ~ 172 (196)
T PF01739_consen 172 F 172 (196)
T ss_dssp E
T ss_pred E
Confidence 8
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.8e-06 Score=81.01 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=66.9
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~ 271 (412)
.++|+|||+|--+.-+|..--.|.|+|.|..||-++.- +.. .. ++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k---~~~--~~---------y~~-------------------- 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKK---HPP--VT---------YCH-------------------- 81 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhc---CCC--cc---------ccc--------------------
Confidence 78899999997778888875579999999999965441 100 00 000
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEe--c-ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 272 ~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F-FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+|...++.+|.+ .+++.|+|++. + +.| +.++++.++|+||+.|-.|
T Consensus 82 ----t~~~ms~~~~v~L~g---~e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 82 ----TPSTMSSDEMVDLLG---GEESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred ----CCccccccccccccC---CCcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEE
Confidence 014566677777765 26899999754 2 344 5689999999999877555
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=78.37 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=84.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..|-+.. +..+||++|.++|.=+..+|+. +-.|+.+|....+...|+-.+..+
T Consensus 70 lL~~l~~~~------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a---------------- 127 (247)
T PLN02589 70 FLNMLLKLI------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA---------------- 127 (247)
T ss_pred HHHHHHHHh------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 666666654 3468999999999999988864 458999999999988777444321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--CC--CCCCccEEEEecccCCh-hhHHHHHHHHHHhcc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PS--QVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 325 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~--~~--~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LK 325 (412)
....++.++.||..+.... +. ..++||+| |||.. .+-..|++.+.++|+
T Consensus 128 ----------------------g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i----FiDadK~~Y~~y~~~~l~ll~ 181 (247)
T PLN02589 128 ----------------------GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI----FVDADKDNYINYHKRLIDLVK 181 (247)
T ss_pred ----------------------CCCCceEEEeccHHHHHHHHHhccccCCcccEE----EecCCHHHhHHHHHHHHHhcC
Confidence 1123478899998885321 00 12689988 77865 446689999999999
Q ss_pred CCcEEEEecCcchh
Q 015160 326 DGGVWINLGPLLYH 339 (412)
Q Consensus 326 PGG~wIN~GPLlyh 339 (412)
|||++|- -.++|+
T Consensus 182 ~GGviv~-DNvl~~ 194 (247)
T PLN02589 182 VGGVIGY-DNTLWN 194 (247)
T ss_pred CCeEEEE-cCCCCC
Confidence 9999883 335665
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.6e-06 Score=85.36 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=83.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||.|..+..||++. -.|+|+|+|..|+..++..++.. ++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--------------------------g~--- 302 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--------------------------GL--- 302 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 56799999999999999999862 47999999999997665322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-CCCCCCccEEEE---ec---cc---------CChhh-------HHHHHHHHHH
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVT---CF---FI---------DTAHN-------IVEYIEIISR 322 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT---~F---FI---------Dta~N-------i~~yl~~I~~ 322 (412)
.++.++.+|+.++... +...++||.|+. |. -+ .+..+ ..+.|+.+.+
T Consensus 303 ----------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 303 ----------KSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred ----------CeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 1267788888765310 012468999984 21 01 11122 2467999999
Q ss_pred hccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhC-CCEEE
Q 015160 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFE 371 (412)
Q Consensus 323 ~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~-GFeii 371 (412)
+|||||++|-..-.++. +=..+.+..++++. +|+++
T Consensus 373 ~lkpgG~lvystcsi~~-------------~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 373 LLKPGGTLVYATCTLHP-------------AENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred hcCCCCEEEEEeCCCCh-------------hhHHHHHHHHHHhCCCcEec
Confidence 99999999831111111 11235666777654 68765
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=78.17 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 30 i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 30 ILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILA 81 (272)
T ss_pred HHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 55555554432 25568999999999999999999999999999999986544
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=83.83 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=71.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
++++.+.+.+.. .++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+.-+.. +
T Consensus 279 ~l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~----~-------------- 337 (431)
T TIGR00479 279 KLVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL----N-------------- 337 (431)
T ss_pred HHHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH----h--------------
Confidence 344444444421 1446899999999999999999999999999999999777632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGV 329 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~ 329 (412)
. ..++.++.||+.++.. .+...+.||+|+ +|.... ..+.++.+.+ |+|+|+
T Consensus 338 --------~-------------~~nv~~~~~d~~~~l~~~~~~~~~~D~vi----~dPPr~G~~~~~l~~l~~-l~~~~i 391 (431)
T TIGR00479 338 --------G-------------IANVEFLAGTLETVLPKQPWAGQIPDVLL----LDPPRKGCAAEVLRTIIE-LKPERI 391 (431)
T ss_pred --------C-------------CCceEEEeCCHHHHHHHHHhcCCCCCEEE----ECcCCCCCCHHHHHHHHh-cCCCEE
Confidence 0 0237889999876321 011135799886 354321 2355565554 889876
Q ss_pred E
Q 015160 330 W 330 (412)
Q Consensus 330 w 330 (412)
.
T Consensus 392 v 392 (431)
T TIGR00479 392 V 392 (431)
T ss_pred E
Confidence 4
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=79.57 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=64.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.+.+.... .++.+||++|||+|.++..|++++-.|+|+|++..|+..++-.+...
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~------------------- 81 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS------------------- 81 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 44444444322 25678999999999999999999999999999999987655222100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 310 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta 310 (412)
....++.++.+|+.++.. ..||+||.+ |+|.+.
T Consensus 82 -------------------~~~~~v~ii~~Dal~~~~-----~~~d~VvaNlPY~Istp 116 (294)
T PTZ00338 82 -------------------PLASKLEVIEGDALKTEF-----PYFDVCVANVPYQISSP 116 (294)
T ss_pred -------------------CCCCcEEEEECCHhhhcc-----cccCEEEecCCcccCcH
Confidence 001247899999988643 468998876 566654
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=81.77 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=104.6
Q ss_pred cccChhHHhhc--------hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhh
Q 015160 160 AAEGKTERDQC--------YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI 230 (412)
Q Consensus 160 S~eG~~ER~~~--------y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fi 230 (412)
.+.|.+.|+.+ -.+|-..|-+.+- ++...||++|||-|....-.-+.|. ...|+|++.--+--++--
T Consensus 84 ~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~R 159 (389)
T KOG1975|consen 84 TEVGREKRQRSPIIFLRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKR 159 (389)
T ss_pred HHHhHhhhccCceeehhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHH
Confidence 34666677542 2233334444442 2456799999999999888878886 588999998666433311
Q ss_pred hhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC---CCCCCCCccEEEEecc-
Q 015160 231 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS---DPSQVGAWDAVVTCFF- 306 (412)
Q Consensus 231 ln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~---~~~~~~~fD~VvT~FF- 306 (412)
.+.. | .+.+ ...|| ..|++||-+.... .++.+.+||+|-+-|.
T Consensus 160 Yrdm------------~------~r~~---~~~f~------------a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~ 206 (389)
T KOG1975|consen 160 YRDM------------K------NRFK---KFIFT------------AVFIAADCFKERLMDLLEFKDPRFDIVSCQFAF 206 (389)
T ss_pred HHHH------------H------hhhh---cccce------------eEEEEeccchhHHHHhccCCCCCcceeeeeeeE
Confidence 1100 0 0000 11111 4567777543110 1122345999977663
Q ss_pred ---cCChhhHHHHHHHHHHhccCCcEEEEecC----cchhhhhc----c----------------CC-CCC---------
Q 015160 307 ---IDTAHNIVEYIEIISRILKDGGVWINLGP----LLYHFADL----Y----------------GQ-EDE--------- 349 (412)
Q Consensus 307 ---IDta~Ni~~yl~~I~~~LKPGG~wIN~GP----Llyh~~~~----~----------------g~-~~~--------- 349 (412)
..|.+...-.+..+.++|||||+||.--| ++|+.... . +. ++.
T Consensus 207 HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~Le 286 (389)
T KOG1975|consen 207 HYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLE 286 (389)
T ss_pred eeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcc
Confidence 45666688899999999999999996544 22222110 0 00 110
Q ss_pred -----cccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 350 -----MSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 350 -----~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..+-...+-++.+++++|.+++...
T Consensus 287 daVdcPEylV~F~~l~~lae~y~LeLv~~k 316 (389)
T KOG1975|consen 287 DAVDCPEYLVPFPTLVSLAEEYGLELVFVK 316 (389)
T ss_pred cccCCcceeeehHHHHHHHHhcCcEEEEec
Confidence 0122367889999999999999754
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=82.23 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=35.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~f 229 (412)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~ 280 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE 280 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 5679999999999999999886 2589999999999977663
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-05 Score=73.39 Aligned_cols=39 Identities=21% Similarity=-0.061 Sum_probs=35.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (412)
+.+|||++||+|.++.+++.+|. .|+++|.+..++..++
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK 89 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 45899999999999999999997 7999999999986655
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=82.04 Aligned_cols=141 Identities=20% Similarity=0.163 Sum_probs=94.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
+..|.+....-++... +++..||||=||||...+|....|..|.|+|++..|+.-++--|++
T Consensus 180 s~~P~lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~---------------- 241 (347)
T COG1041 180 SMDPRLARAMVNLARV--KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY---------------- 241 (347)
T ss_pred CcCHHHHHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh----------------
Confidence 4566676666555432 3677999999999999999999999999999999999765522211
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c-----cCCh--hh-HHHHHHHH
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F-----IDTA--HN-IVEYIEII 320 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F-----IDta--~N-i~~yl~~I 320 (412)
..+++. ..+...|++.+.. ..+++|+|+|=- | +... .. ..+.|+++
T Consensus 242 ------------y~i~~~----------~~~~~~Da~~lpl---~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~ 296 (347)
T COG1041 242 ------------YGIEDY----------PVLKVLDATNLPL---RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESA 296 (347)
T ss_pred ------------hCcCce----------eEEEecccccCCC---CCCccceEEecCCCCcccccccccHHHHHHHHHHHH
Confidence 111111 1233348777653 345799999853 2 1111 12 45789999
Q ss_pred HHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 321 SRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 321 ~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+.+||+||+++-..|- ... ..++..||+++..-
T Consensus 297 ~evLk~gG~~vf~~p~-----------------~~~----~~~~~~~f~v~~~~ 329 (347)
T COG1041 297 SEVLKPGGRIVFAAPR-----------------DPR----HELEELGFKVLGRF 329 (347)
T ss_pred HHHhhcCcEEEEecCC-----------------cch----hhHhhcCceEEEEE
Confidence 9999999999864441 011 13557899998854
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.1e-05 Score=72.34 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=34.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (412)
++.+|||+|||||.++..|+++|. .|+|+|+|..||..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 566899999999999999999986 69999999999853
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=74.85 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=81.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+..|||+|||||+|++-.+-+| +.|.|+|+...++.+++-..+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~----------------------------------- 89 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE----------------------------------- 89 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH-----------------------------------
Confidence 45689999999999999999999 689999999999987762111
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c--ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL 343 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F--FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~ 343 (412)
....++.++.+|..++. +.+|.|+++ | -.-.+ | ..++....++- - ..|....
T Consensus 90 -----~l~g~v~f~~~dv~~~~------~~~dtvimNPPFG~~~rha-D-r~Fl~~Ale~s----~------vVYsiH~- 145 (198)
T COG2263 90 -----ELLGDVEFVVADVSDFR------GKFDTVIMNPPFGSQRRHA-D-RPFLLKALEIS----D------VVYSIHK- 145 (198)
T ss_pred -----hhCCceEEEEcchhhcC------CccceEEECCCCccccccC-C-HHHHHHHHHhh----h------eEEEeec-
Confidence 01234889999988864 578888776 3 11111 1 12232222211 1 1222111
Q ss_pred cCCCCCcccCCCHHHHHHHHHhCCCEEEEEe----eccccCC
Q 015160 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKEK----TIETTYT 381 (412)
Q Consensus 344 ~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~----~i~s~Y~ 381 (412)
--+.+-+++.....||++...+ .++..|.
T Consensus 146 ---------a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~ 178 (198)
T COG2263 146 ---------AGSRDFVEKFAADLGGTVTHIERARFPIPRTYP 178 (198)
T ss_pred ---------cccHHHHHHHHHhcCCeEEEEEEEEEecCccCc
Confidence 1278889999999999988753 3445554
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.2e-05 Score=71.98 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=76.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
++..+.+.+.- +++.+||++|||+|+.+.-||+.+-.|.++|........|+-.|..
T Consensus 60 ~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-------------------- 116 (209)
T COG2518 60 MVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-------------------- 116 (209)
T ss_pred HHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH--------------------
Confidence 44444444432 3678999999999999999999988999999999887666533321
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN- 332 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN- 332 (412)
.- -.|+.+.+||-..=+. ....||.|+..--.++.+ +...+-|||||++|-
T Consensus 117 --------lg-----------~~nV~v~~gDG~~G~~---~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 117 --------LG-----------YENVTVRHGDGSKGWP---EEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred --------cC-----------CCceEEEECCcccCCC---CCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEE
Confidence 11 1237889999766443 257899886443333332 345668999999996
Q ss_pred ec
Q 015160 333 LG 334 (412)
Q Consensus 333 ~G 334 (412)
+|
T Consensus 169 vG 170 (209)
T COG2518 169 VG 170 (209)
T ss_pred Ec
Confidence 45
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=73.20 Aligned_cols=210 Identities=16% Similarity=0.156 Sum_probs=120.2
Q ss_pred cccccccCCCCCCCCCCCCCCcCCCCCCcchHHHH--HHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCe
Q 015160 115 NDFTDSNGNASSPACDWLDPSIQLNVPLADVDKVR--CIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA 192 (412)
Q Consensus 115 ~~~~~~~g~~~~~~~~w~~~~~~~~~~~~d~~kv~--s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~r 192 (412)
..++.+.|..|.+.-+|.=-.. .+- ..-+.|.. .-|..+- | .|-..|+.-....+..--..+... ..+.+
T Consensus 67 i~lG~~tGFDSGstLDYVYrN~-p~G-~~~~GrliDr~yLnaiG--W--rGIR~Rk~~l~~~i~~ai~~L~~~--g~pvr 138 (311)
T PF12147_consen 67 IRLGLETGFDSGSTLDYVYRNQ-PQG-KGPLGRLIDRNYLNAIG--W--RGIRQRKVHLEELIRQAIARLREQ--GRPVR 138 (311)
T ss_pred eeechhcCCCCcchHhHHhcCC-CCC-cchHHHHHHHhhhcccc--h--HHHHHHHHHHHHHHHHHHHHHHhc--CCceE
Confidence 4566677877666666654331 000 01111111 0111111 3 466777764433333322222211 26789
Q ss_pred EEEecCCCChhHHHHHHcC----CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 193 CLVPGAGLGRLALEISHLG----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 193 VLvPGCGlGRLa~eLA~~G----f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
|||+.||.||..++..... -.|.-+|+|..-+...+-+... |++
T Consensus 139 IlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~--------------------------~gL------ 186 (311)
T PF12147_consen 139 ILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE--------------------------RGL------ 186 (311)
T ss_pred EEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH--------------------------cCC------
Confidence 9999999999999986653 3588999999887766644321 011
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c--ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL- 343 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F--FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~- 343 (412)
.+-++|.++|.++........-..++++.+ | |-|. .-|..-|.-++.+|.|||++|--| --||-...
T Consensus 187 ------~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn-~lv~~sl~gl~~al~pgG~lIyTg-QPwHPQle~ 258 (311)
T PF12147_consen 187 ------EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDN-DLVRRSLAGLARALEPGGYLIYTG-QPWHPQLEM 258 (311)
T ss_pred ------ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcH-HHHHHHHHHHHHHhCCCcEEEEcC-CCCCcchHH
Confidence 111588999988743211122345655544 2 4343 336678999999999999999533 22553211
Q ss_pred ----c----CCCCCccc--CCCHHHHHHHHHhCCCEEEEEe
Q 015160 344 ----Y----GQEDEMSI--ELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 344 ----~----g~~~~~~i--eLS~EEL~~ll~~~GFeii~e~ 374 (412)
. ++.+ .+ --|..|+.+|++.+||+-+...
T Consensus 259 IAr~LtsHr~g~~--WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 259 IARVLTSHRDGKA--WVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHhcccCCCc--eEEEecCHHHHHHHHHHcCCchhhhe
Confidence 0 1111 22 2499999999999999855443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.6e-05 Score=74.51 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=97.3
Q ss_pred hcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhc
Q 015160 157 RDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNH 233 (412)
Q Consensus 157 RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~ 233 (412)
.+|+.-=...-+..|++=+..|..++.- +++.+||+-|.|.|.|+..||+. | =.|...|+....+..|+--+..
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH
Confidence 3465544444467888888888777653 37899999999999999999975 2 2899999999998776622211
Q ss_pred ccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhH
Q 015160 234 TETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI 313 (412)
Q Consensus 234 ~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni 313 (412)
+ ....++.+..+|..+--......+.+|+| |||.. +.
T Consensus 88 ------~--------------------------------gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav----fLDlp-~P 124 (247)
T PF08704_consen 88 ------H--------------------------------GLDDNVTVHHRDVCEEGFDEELESDFDAV----FLDLP-DP 124 (247)
T ss_dssp ------T--------------------------------TCCTTEEEEES-GGCG--STT-TTSEEEE----EEESS-SG
T ss_pred ------c--------------------------------CCCCCceeEecceecccccccccCcccEE----EEeCC-CH
Confidence 0 11234788888876421111123568887 67865 46
Q ss_pred HHHHHHHHHhc-cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 314 VEYIEIISRIL-KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 314 ~~yl~~I~~~L-KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
-++|..+.++| ||||++..+-|..- . ...+...|++.||..++
T Consensus 125 w~~i~~~~~~L~~~gG~i~~fsP~ie------------Q----v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 125 WEAIPHAKRALKKPGGRICCFSPCIE------------Q----VQKTVEALREHGFTDIE 168 (247)
T ss_dssp GGGHHHHHHHE-EEEEEEEEEESSHH------------H----HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEECCCHH------------H----HHHHHHHHHHCCCeeeE
Confidence 68999999999 99999998766421 1 12334456678998776
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.3e-05 Score=78.41 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||+|||+|.++.++|.+|..|+|+|+|..++..++.-+.. + .
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~----~----------------------~-------- 279 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQM----L----------------------G-------- 279 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 35899999999999999999999999999999999877622210 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQ 346 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g~ 346 (412)
..++.+.++|+.++.. ...++||+|+. |.... ..+.++.+.+ ++|+++..- ..|-.
T Consensus 280 -----~~~~~~~~~d~~~~~~--~~~~~~D~vi~----DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p~T--------- 338 (374)
T TIGR02085 280 -----LDNLSFAALDSAKFAT--AQMSAPELVLV----NPPRRGIGKELCDYLSQ-MAPKFILYSSCNAQT--------- 338 (374)
T ss_pred -----CCcEEEEECCHHHHHH--hcCCCCCEEEE----CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCHHH---------
Confidence 0137889999876432 11246998864 43322 2344555543 788776542 33321
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
=..|++.+ .||++.+-.
T Consensus 339 --------laRDl~~L---~gy~l~~~~ 355 (374)
T TIGR02085 339 --------MAKDIAEL---SGYQIERVQ 355 (374)
T ss_pred --------HHHHHHHh---cCceEEEEE
Confidence 12345544 599998855
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-05 Score=76.67 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHHhhhhccccccccccccc----------ccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW----------IHS 248 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~----------i~~ 248 (412)
...||+..||.||--++-||.. .+.|.|.|+|..+|..|+- .+||- ...
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~-----------G~Y~~~~~r~~p~~~~~r 183 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS-----------GIYRQEELKTLSPQQLQR 183 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh-----------CCCCHHHHhcCCHHHHHH
Confidence 3589999999999877766543 3689999999999977661 22330 000
Q ss_pred cCCCC-CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 015160 249 NCNSL-SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (412)
Q Consensus 249 ~sn~~-s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~L 324 (412)
+=... ...+ ....+ .+ .....+.|...|..+... | ..+.||+|++.. |++. +...+.++.+++.|
T Consensus 184 yF~~~~~~~~--~~~~v---~~---~lr~~V~F~~~NL~~~~~-~-~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L 252 (287)
T PRK10611 184 YFMRGTGPHE--GLVRV---RQ---ELANYVDFQQLNLLAKQW-A-VPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLL 252 (287)
T ss_pred HcccccCCCC--ceEEE---Ch---HHHccCEEEcccCCCCCC-c-cCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHh
Confidence 00000 0000 00011 00 123458899999876311 1 247899998742 4544 34778999999999
Q ss_pred cCCcEEE
Q 015160 325 KDGGVWI 331 (412)
Q Consensus 325 KPGG~wI 331 (412)
||||+++
T Consensus 253 ~pgG~L~ 259 (287)
T PRK10611 253 KPDGLLF 259 (287)
T ss_pred CCCcEEE
Confidence 9999876
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.4e-05 Score=72.87 Aligned_cols=99 Identities=26% Similarity=0.334 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
+..+||++|.++|.=+..+|.. | .++.+|+.++|...|+-.+..+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~a------------------------------ 107 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEA------------------------------ 107 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHc------------------------------
Confidence 5679999999999999988865 4 7999999999998887555322
Q ss_pred CCCCCCCCCCCCceeEEe-cccccccCCCCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEE
Q 015160 265 PDIHPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~-GDF~ely~~~~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+.+.++. ||.++.... ...++||+| |||-+ .+-.+|++.+.++|||||+.|
T Consensus 108 --------g~~~~i~~~~~gdal~~l~~-~~~~~fDli----FIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 108 --------GVDDRIELLLGGDALDVLSR-LLDGSFDLV----FIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred --------CCcceEEEEecCcHHHHHHh-ccCCCccEE----EEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 1112356666 688876541 235899998 78876 445689999999999999999
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.6e-05 Score=72.15 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-----------EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI-----------SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-----------V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ 257 (412)
++..||||=||+|.+..|-|..|.. +.|.|++..|+..|+-.+..+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a----------------------- 84 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA----------------------- 84 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----------------------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----------------------
Confidence 5568999999999999999888765 459999999998877433221
Q ss_pred CccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c---cCChhhHH----HHHHHHHHhccCCcE
Q 015160 258 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDTAHNIV----EYIEIISRILKDGGV 329 (412)
Q Consensus 258 qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDta~Ni~----~yl~~I~~~LKPGG~ 329 (412)
.....+.+..+|++++.. ..+.+|+|||.- | +....++. +.++.+.++|++..+
T Consensus 85 ---------------g~~~~i~~~~~D~~~l~~---~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v 146 (179)
T PF01170_consen 85 ---------------GVEDYIDFIQWDARELPL---PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAV 146 (179)
T ss_dssp ---------------T-CGGEEEEE--GGGGGG---TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEE
T ss_pred ---------------ccCCceEEEecchhhccc---ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 011237889999999862 257999999983 2 33333232 357888889999666
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
||.
T Consensus 147 ~l~ 149 (179)
T PF01170_consen 147 FLT 149 (179)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.3e-05 Score=73.61 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=66.9
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.-+|++|||.|+....+|++ +..+.|+|++..-+..+. +.+.+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~---~~~~~~------------------------------- 64 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL---RKAEKR------------------------------- 64 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH---HHHHHH-------------------------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH---HHHHhh-------------------------------
Confidence 38999999999999999998 678999999998775433 111110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChh--h---HHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAH--N---IVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~--N---i~~yl~~I~~~LKPGG~wI 331 (412)
...|+.++.+|+..+...-...+++|.|.-.| +-..-+ . -.++++.++++|||||.+-
T Consensus 65 -----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 65 -----GLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp -----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred -----cccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 11357889999877332101257899887666 111111 1 1268999999999999874
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0001 Score=71.20 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+.+.+... ++.+|||+|||+|.++..|++++..|+|+|.+..|+..++
T Consensus 17 i~~~i~~~~~~~---~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 17 VIQKIVEAANVL---EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILR 68 (253)
T ss_pred HHHHHHHhcCCC---CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 555555544322 4679999999999999999999999999999999986544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0002 Score=69.65 Aligned_cols=107 Identities=18% Similarity=0.118 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|-|.|.++.++.+.. -.|+.+|+++.++.+++.-+..... .
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~------------------------~----- 126 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE------------------------G----- 126 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT------------------------T-----
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc------------------------c-----
Confidence 46799999999999999999886 4799999999999777633211000 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCC-CccEEEEecccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVG-AWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~-~fD~VvT~FFID--ta~N--i~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|.+.+-. ...+ +||+|+.=.+-. .+.+ -.++++.+.++|+|||+++.
T Consensus 127 ------~~d~r~~i~~~Dg~~~l~--~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 127 ------LDDPRVRIIIGDGRKFLK--ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp ------GGSTTEEEEESTHHHHHH--TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCceEEEEhhhHHHHH--hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 012358889999887543 1234 899998655421 2222 24899999999999999985
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00025 Score=71.76 Aligned_cols=139 Identities=10% Similarity=0.004 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCcccChhHHh--hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEeC
Q 015160 148 VRCIIRNIVRDWAAEGKTERD--QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNEF 219 (412)
Q Consensus 148 v~s~L~q~~RDWS~eG~~ER~--~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL------A~~Gf~V~GnD~ 219 (412)
=.....+|++ ..|.=.-|. ..+......|.+.++ ++..|+++|||.||-+..| +.++..-.++|+
T Consensus 40 Gs~LFe~It~--lpEYYptr~E~~iL~~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDI 112 (319)
T TIGR03439 40 GLKLFEEITY--SPEYYLTNDEIEILKKHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDV 112 (319)
T ss_pred HHHHHHHHHc--CCccCChHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3445666664 232222221 133344455555555 4458999999999984432 223577889999
Q ss_pred CHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCC--CCC
Q 015160 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS--QVG 296 (412)
Q Consensus 220 S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-~~~--~~~ 296 (412)
|..+|..+.--| +.-.+|.+. +.-+.|||.+... .+. ..+
T Consensus 113 S~~~L~~a~~~L----------------------------~~~~~p~l~---------v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 113 SRSELQRTLAEL----------------------------PLGNFSHVR---------CAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CHHHHHHHHHhh----------------------------hhccCCCeE---------EEEEEecHHHHHhhcccccccC
Confidence 999996554221 111233321 4457788876321 111 122
Q ss_pred CccEEEEe---c-ccCChhhHHHHHHHHHH-hccCCcEEE
Q 015160 297 AWDAVVTC---F-FIDTAHNIVEYIEIISR-ILKDGGVWI 331 (412)
Q Consensus 297 ~fD~VvT~---F-FIDta~Ni~~yl~~I~~-~LKPGG~wI 331 (412)
...+|+-. + -+ +.+....+|+.|++ .|+|||.++
T Consensus 156 ~~r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 156 RPTTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred CccEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEE
Confidence 34444321 1 12 23446789999999 999999887
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.2e-05 Score=76.60 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|+|.|.++.++.+.. -.|+.+|++..++..++--+ |+.+ + .
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~------------~~~~---~---------~----- 153 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL------------TVNR---E---------A----- 153 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc------------cccc---c---------c-----
Confidence 34689999999999999998853 36999999999997766211 1100 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-----hhhH--HHHHH-HHHHhccCCcEEE-EecC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNI--VEYIE-IISRILKDGGVWI-NLGP 335 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-----a~Ni--~~yl~-~I~~~LKPGG~wI-N~GP 335 (412)
-...++.++.+|.+.+-. ...++||+|+.=.+ |. +..+ .++++ .+.+.|+|||+++ +.++
T Consensus 154 ------~~dprv~v~~~Da~~~L~--~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 154 ------FCDKRLELIINDARAELE--KRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ------ccCCceEEEEChhHHHHh--hCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 011347889999887543 23578999986432 21 1111 36787 8999999999997 4444
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.5e-05 Score=71.14 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|+|.|.++..|+++ +-+++..|+ +..+..++ +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-------~------------------------------ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-------E------------------------------ 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-------H------------------------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-------c------------------------------
Confidence 4468999999999999999988 678888888 55542111 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC--cEEEEecC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG--GVWINLGP 335 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPG--G~wIN~GP 335 (412)
.+++.++.|||++-. | . +|+|+-..+|+ ..+.....|+.+++.|+|| |.+|-+.+
T Consensus 142 --------~~rv~~~~gd~f~~~--P---~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 142 --------ADRVEFVPGDFFDPL--P---V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp --------TTTEEEEES-TTTCC--S---S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred --------ccccccccccHHhhh--c---c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 134889999998532 2 3 99998877664 5566889999999999999 99885433
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.9e-06 Score=86.00 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=88.0
Q ss_pred HHHHHHhhCCCCCCCCC-CeEEEecCCCChhHHHHHHcCCeEEEE---eCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 174 ILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFISQGN---EFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~-~rVLvPGCGlGRLa~eLA~~Gf~V~Gn---D~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
-++.|.+.+|....... -.+||.|||+|.++..|..+|-.+..+ |-..... +|+|.
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qv---qfale----------------- 160 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQV---QFALE----------------- 160 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhh---hhhhh-----------------
Confidence 45666776665211123 367999999999999999998654322 1111111 11111
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-CChhhHHHHHHHHHHhccCCc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-DTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI-Dta~Ni~~yl~~I~~~LKPGG 328 (412)
|++ |.+ +. +.|.- .+|+..+.||+|-+.-++ .=..+---||-.|.|+|||||
T Consensus 161 ----------RGv--pa~----------~~-~~~s~----rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 161 ----------RGV--PAM----------IG-VLGSQ----RLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG 213 (506)
T ss_pred ----------cCc--chh----------hh-hhccc----cccCCccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence 222 221 10 11221 224557999999766443 222222358999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 329 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+||--||..|.-.+ ...+-.++++..+.+++-|+.+.++
T Consensus 214 yfv~S~ppv~~r~~-------~~~~~~~~~~~~l~~~lCW~~va~~ 252 (506)
T PF03141_consen 214 YFVLSGPPVYQRTD-------EDLEEEWNAMEDLAKSLCWKKVAEK 252 (506)
T ss_pred eEEecCCcccccch-------HHHHHHHHHHHHHHHHHHHHHheee
Confidence 99998888771110 1223457788888888888887754
|
; GO: 0008168 methyltransferase activity |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.8e-05 Score=77.37 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++..|||.|||||-|+..-|+.|. .|.|+|.|.-+ ..|+-+.+. +.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~----N~~--------------------------- 107 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD----NGL--------------------------- 107 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh----cCc---------------------------
Confidence 567999999999999999999998 59999999855 444433321 111
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..-+.++.|...++.. | .++.|+|++-+ ||--..-+..+|-.=-+.|||||+..
T Consensus 108 -------~~ii~vi~gkvEdi~L-P--~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 -------EDVITVIKGKVEDIEL-P--VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -------cceEEEeecceEEEec-C--ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1126778888877743 4 58999999863 33322223345555558999999986
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=57.64 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=61.0
Q ss_pred EEEecCCCChhH--HHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 193 CLVPGAGLGRLA--LEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 193 VLvPGCGlGRLa--~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
||++|||+|+.. ..+...++.++|+|+|..|+..+...... . ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~-----------------------~~-------- 97 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG---A-----------------------GL-------- 97 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh---c-----------------------CC--------
Confidence 999999999954 44444456899999999998652211000 0 00
Q ss_pred CCCCCCceeEEecccccc-cCCCCCC-CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 271 SAGITEGFSMCGGDFVEV-YSDPSQV-GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~el-y~~~~~~-~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..+.+..+|.... .. ... ..||++.....+.... ....+..+.+.|+|||.++.
T Consensus 98 -----~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 98 -----GLVDFVVADALGGVLP--FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred -----CceEEEEeccccCCCC--CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEE
Confidence 0034555565541 22 223 4799983322222222 67899999999999999985
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=71.08 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=68.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+.+||++|-|-|..+.|+.|.--+|+-+|+...++.+++-- .|.++. +.+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~------------lP~~~~-----~~~------------ 122 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISF------------FPHFHE-----VKN------------ 122 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHH------------CHHHHH-----hhc------------
Confidence 567999999999999999999866999999999999776621 232221 001
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++. .+.+ ...++||+|+.=- .. -.++++.++++|+|||+++.
T Consensus 123 ------DpRv~l~~-~~~~-----~~~~~fDVIIvDs----~~-~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 123 ------NKNFTHAK-QLLD-----LDIKKYDLIICLQ----EP-DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred ------CCCEEEee-hhhh-----ccCCcCCEEEEcC----CC-ChHHHHHHHHhcCCCcEEEE
Confidence 12344443 1222 1237899998531 11 14788999999999999997
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00055 Score=69.42 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fil 231 (412)
.+.+|||+|||+|-++..|+.+ |..++|+|++..++..|+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 5689999999999998888776 778999999999998888543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=71.17 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=72.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH---------cCCeEEEEeCCHHHHHHHHhhhhccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISH---------LGFISQGNEFSYYMMICSSFILNHTETAGEWNIY 243 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~---------~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~ 243 (412)
.|.+.+.+.+... ++.+||||+||+|.+..++.+ ....+.|+|++..++..|..-+- ..
T Consensus 33 ~i~~l~~~~~~~~---~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~--l~------- 100 (311)
T PF02384_consen 33 EIVDLMVKLLNPK---KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL--LH------- 100 (311)
T ss_dssp HHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH--HT-------
T ss_pred HHHHHHHhhhhcc---ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh--hh-------
Confidence 3556666655322 556899999999999888776 46789999999999876652210 00
Q ss_pred ccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC-------------
Q 015160 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------- 308 (412)
Q Consensus 244 P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID------------- 308 (412)
.+. ..++.+..+|.+.-... .....||+|+++ |-..
T Consensus 101 -----------------~~~-----------~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~ 151 (311)
T PF02384_consen 101 -----------------GID-----------NSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERF 151 (311)
T ss_dssp -----------------THH-----------CBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCC
T ss_pred -----------------ccc-----------ccccccccccccccccc-ccccccccccCCCCccccccccccccccccc
Confidence 000 01134566776543221 113679999887 2110
Q ss_pred ------ChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 309 ------TAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 309 ------ta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
....-..++..+.+.||+||..+-+-|
T Consensus 152 ~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 152 KKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 111123588999999999999876545
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00027 Score=70.01 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----------CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ 257 (412)
...||..+||+||--++-||-. .+.+.|.|+|..+|..|+ .-+||--....+ ...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~-----------~G~Y~~~~~~~~---~~~ 161 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR-----------AGIYPSRELLRG---LPP 161 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh-----------cCCCChhHhhcc---CCH
Confidence 4789999999999866655532 367899999999997655 134440000000 000
Q ss_pred Ccccc---ccCCC-CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEE
Q 015160 258 QLRPV---SIPDI-HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 258 qlr~v---~iPDv-~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
+++.- ..+|- -.-.......+.|-..|..+-.. ..+.||+|++-. |+|... -.+.++.++..|+|||++
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~L 237 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLL 237 (268)
T ss_pred HHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEE
Confidence 00000 00000 00000123457888888776431 357899999753 566432 458899999999999999
Q ss_pred E
Q 015160 331 I 331 (412)
Q Consensus 331 I 331 (412)
+
T Consensus 238 f 238 (268)
T COG1352 238 F 238 (268)
T ss_pred E
Confidence 8
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00049 Score=68.62 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=76.5
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+||++|-|.|..+.++.+.. -+++.+|+...++..|+.-+-. .++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~---------------~~~~---------------- 126 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPE---------------PSGG---------------- 126 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccC---------------cccc----------------
Confidence 599999999999999999998 5799999999999877632210 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|-.++-.. ..++||+|+.--+ .-.++++ .++++.++++|+|+|+++.
T Consensus 127 ----~~dpRv~i~i~Dg~~~v~~--~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 127 ----ADDPRVEIIIDDGVEFLRD--CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred ----cCCCceEEEeccHHHHHHh--CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 0023578888898876542 2348999986433 2333443 4799999999999999996
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0003 Score=77.88 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=70.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-------------C-------------------------------CeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL-------------G-------------------------------FISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-------------G-------------------------------f~V~GnD~S~~ML 224 (412)
++..++||+||.|.+..|.|.. | ..++|+|++..|+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3568999999999999999873 1 2589999999999
Q ss_pred HHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 015160 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (412)
Q Consensus 225 ~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~ 304 (412)
..|+--+..+ ...+.+.+..+|+.++.. +...++||+|||+
T Consensus 270 ~~A~~N~~~~--------------------------------------g~~~~i~~~~~D~~~~~~-~~~~~~~d~IvtN 310 (702)
T PRK11783 270 QAARKNARRA--------------------------------------GVAELITFEVKDVADLKN-PLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHHc--------------------------------------CCCcceEEEeCChhhccc-ccccCCCCEEEEC
Confidence 8887332210 111236789999998743 2223579999998
Q ss_pred --cc--cCChhhHHHHHHHHHHhcc---CCcEEE
Q 015160 305 --FF--IDTAHNIVEYIEIISRILK---DGGVWI 331 (412)
Q Consensus 305 --FF--IDta~Ni~~yl~~I~~~LK---PGG~wI 331 (412)
|. +....++.+..+.+.+.|| +|+...
T Consensus 311 PPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 311 PPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred CCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 44 3334555555555555555 776654
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00033 Score=67.31 Aligned_cols=123 Identities=21% Similarity=0.213 Sum_probs=83.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~ 245 (412)
.|..++++|..++- ++-+.|++|.|+|.|+.-+|+. |-.+.|+|.=+..+..|..-++.-
T Consensus 68 mha~~le~L~~~L~-----pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~----------- 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQ-----PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD----------- 131 (237)
T ss_pred HHHHHHHHHHHhhc-----cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh-----------
Confidence 46678888887763 6779999999999998888844 556699999888887666433211
Q ss_pred ccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 015160 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (412)
Q Consensus 246 i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LK 325 (412)
++-|+. .+ .-...+++++.||-+..+. ...+||+|..- ....+.-+..-..||
T Consensus 132 ----------------i~~~e~-~~-~~~~~~l~ivvGDgr~g~~---e~a~YDaIhvG------Aaa~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 132 ----------------ITTSES-SS-KLKRGELSIVVGDGRKGYA---EQAPYDAIHVG------AAASELPQELLDQLK 184 (237)
T ss_pred ----------------ccCchh-hh-hhccCceEEEeCCccccCC---ccCCcceEEEc------cCccccHHHHHHhhc
Confidence 111111 00 0112348899999998876 25789998653 223455666677888
Q ss_pred CCcEEEE-ecC
Q 015160 326 DGGVWIN-LGP 335 (412)
Q Consensus 326 PGG~wIN-~GP 335 (412)
|||.+|- .||
T Consensus 185 ~gGrllip~~~ 195 (237)
T KOG1661|consen 185 PGGRLLIPVGQ 195 (237)
T ss_pred cCCeEEEeecc
Confidence 8888774 555
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00043 Score=65.73 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH--cCCeEEEEeCC
Q 015160 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH--LGFISQGNEFS 220 (412)
Q Consensus 143 ~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S 220 (412)
.|+.||- ||.--..||.. +.+ .+. ++..|||+-||.|.++.-+|+ ++-.|.++|+.
T Consensus 77 ~D~~kvy---------fs~rl~~Er~R----i~~----~v~-----~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~N 134 (200)
T PF02475_consen 77 VDLSKVY---------FSPRLSTERRR----IAN----LVK-----PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLN 134 (200)
T ss_dssp EETTTS------------GGGHHHHHH----HHT----C-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-
T ss_pred EccceEE---------EccccHHHHHH----HHh----cCC-----cceEEEEccCCccHHHHHHhhhcCccEEEEecCC
Confidence 5666665 88876778863 332 222 567999999999999999999 78889999999
Q ss_pred HHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccE
Q 015160 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDA 300 (412)
Q Consensus 221 ~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~ 300 (412)
+..+...+ ... +.+ .....+..+.||..++.. .+.||-
T Consensus 135 p~a~~~L~---~Ni-~lN----------------------------------kv~~~i~~~~~D~~~~~~----~~~~dr 172 (200)
T PF02475_consen 135 PDAVEYLK---ENI-RLN----------------------------------KVENRIEVINGDAREFLP----EGKFDR 172 (200)
T ss_dssp HHHHHHHH---HHH-HHT----------------------------------T-TTTEEEEES-GGG-------TT-EEE
T ss_pred HHHHHHHH---HHH-HHc----------------------------------CCCCeEEEEcCCHHHhcC----ccccCE
Confidence 87764322 111 100 011237788999988753 578998
Q ss_pred EEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 301 VVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 301 VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
|+-... +.-.++|.....++|+||+.
T Consensus 173 vim~lp----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIMNLP----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE--T----SSGGGGHHHHHHHEEEEEEE
T ss_pred EEECCh----HHHHHHHHHHHHHhcCCcEE
Confidence 765432 22337888899999998864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00083 Score=71.65 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC----------CeEEEEeCCHHHHHHHHhhh
Q 015160 189 SPPACLVPGAGLGRLALEISHLG----------FISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G----------f~V~GnD~S~~ML~~s~fil 231 (412)
...+|||||||+|.+...++.+. -.+.|.|++...+..++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45699999999999988887643 35789999999987776544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0008 Score=62.81 Aligned_cols=104 Identities=23% Similarity=0.350 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
.+.-||++|.|||-++..+-++|. .++++|.|.+.... |+. .+|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~----L~~-----------------------------~~p 94 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH----LNQ-----------------------------LYP 94 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH----HHH-----------------------------hCC
Confidence 567899999999999999999996 58999999988632 221 122
Q ss_pred CCCCCCCCCCCceeEEeccccccc--CCCCCCCCccEEEEec-ccCCh-hhHHHHHHHHHHhccCCcEEEE--ecCc
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVY--SDPSQVGAWDAVVTCF-FIDTA-HNIVEYIEIISRILKDGGVWIN--LGPL 336 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely--~~~~~~~~fD~VvT~F-FIDta-~Ni~~yl~~I~~~LKPGG~wIN--~GPL 336 (412)
+ ..++.||..++. ..+.....||+|+++. ++... +--.++|+.....|.+||.+|. .||+
T Consensus 95 ~-----------~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 95 G-----------VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred C-----------ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 2 235667776654 2223456799999996 33322 2256899999999999999986 4553
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00058 Score=66.07 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
...+|++|||.|++..++|++- ....|+|+...-+..+ ++.+.+. .+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~---l~k~~~~-----------------------~l----- 97 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKA---LKKIKEL-----------------------GL----- 97 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHH---HHHHHHc-----------------------CC-----
Confidence 3589999999999999999995 4678999988766432 2222111 11
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC----Chh--h-H--HHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID----TAH--N-I--VEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID----ta~--N-i--~~yl~~I~~~LKPGG~wI 331 (412)
.|+.++.+|..++...-..+++.|-|.-+| =| .-+ . | ..+++.+.+.|||||.+-
T Consensus 98 --------~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 98 --------KNLRLLCGDAVEVLDYLIPDGSLDKIYINF-PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred --------CcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-CCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 158889999887643212346899887766 22 111 0 1 268999999999999985
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=66.25 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=41.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~ 228 (412)
+++++.+.+... ++..+||.+||+|.++..|++.+ ..|.|+|.+..|+..++
T Consensus 7 ll~Evl~~L~~~---pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 7 LLDEVVDALAIK---PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred cHHHHHHhhCCC---CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 345555555322 45689999999999999999984 68999999999997766
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00093 Score=65.93 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++..||++|+|+|.|+..|+++|..|+++|+...|+..-+-.+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~------------------------------------- 72 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF------------------------------------- 72 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc-------------------------------------
Confidence 4679999999999999999999999999999999874322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 310 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta 310 (412)
....++.++.||++.+.. +.. .+++.||++ |.|.|.
T Consensus 73 ----~~~~n~~vi~~DaLk~d~-~~l-~~~~~vVaNlPY~Issp 110 (259)
T COG0030 73 ----APYDNLTVINGDALKFDF-PSL-AQPYKVVANLPYNISSP 110 (259)
T ss_pred ----ccccceEEEeCchhcCcc-hhh-cCCCEEEEcCCCcccHH
Confidence 012458899999998754 111 168888887 567764
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=72.40 Aligned_cols=143 Identities=22% Similarity=0.248 Sum_probs=94.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+..++|+.|||.|....+++..+ -.++|++.+.+-+..++-..- . =+++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~---~-------~~l~-------------------- 159 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK---K-------AYLD-------------------- 159 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH---H-------HHhh--------------------
Confidence 44589999999999999999987 579999999987654431110 0 0111
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe---------cCcch
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---------GPLLY 338 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~---------GPLly 338 (412)
++..+..+||..- |+.++.||.|-+.--.--+++....+++|+++|||||+||.. .+--+
T Consensus 160 --------~k~~~~~~~~~~~---~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~ 228 (364)
T KOG1269|consen 160 --------NKCNFVVADFGKM---PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSE 228 (364)
T ss_pred --------hhcceehhhhhcC---CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcc
Confidence 1122355566553 345789998866544445677889999999999999999952 11111
Q ss_pred hhhhcc--CCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 339 HFADLY--GQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 339 h~~~~~--g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
|..-.. +..+....+....++..+++..||..+.
T Consensus 229 ~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~ 264 (364)
T KOG1269|consen 229 HVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLK 264 (364)
T ss_pred cccccCceeccccccceeccccHHHHHhhccchhhh
Confidence 110000 0112234556888899999999999887
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=69.82 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=81.1
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCC-CeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccc
Q 015160 165 TERDQCYKPILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNI 242 (412)
Q Consensus 165 ~ER~~~y~pIl~~L~~~~p~~~~~~~-~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I 242 (412)
-||-..|.-+-..|..++. +. -++|.+|||.-+|..++.+-||. ++-+|+|.--+.+.. .-.+ +
T Consensus 28 ~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~--~~~~------~- 93 (482)
T KOG2352|consen 28 FEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQ--VRNA------K- 93 (482)
T ss_pred HHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHH--hccc------c-
Confidence 3443333334444444442 22 38999999999999999999995 899999996654322 1100 0
Q ss_pred cccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-----cccCC--h---hh
Q 015160 243 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-----FFIDT--A---HN 312 (412)
Q Consensus 243 ~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-----FFIDt--a---~N 312 (412)
....+.|...|++.++. .+++||+|+-- +|-|. . .-
T Consensus 94 -------------------------------~~~~~~~~~~d~~~l~f---edESFdiVIdkGtlDal~~de~a~~~~~~ 139 (482)
T KOG2352|consen 94 -------------------------------ERPEMQMVEMDMDQLVF---EDESFDIVIDKGTLDALFEDEDALLNTAH 139 (482)
T ss_pred -------------------------------CCcceEEEEecchhccC---CCcceeEEEecCccccccCCchhhhhhHH
Confidence 01127888889888764 47899999843 23221 1 23
Q ss_pred HHHHHHHHHHhccCCcEEEEe
Q 015160 313 IVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 313 i~~yl~~I~~~LKPGG~wIN~ 333 (412)
+..++..|+++|+|||++|++
T Consensus 140 v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 140 VSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred hhHHHhhHHHHhccCCEEEEE
Confidence 557899999999999999873
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00071 Score=62.17 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|||+|-.+.-+|+. +-.|+..|... -+-..+..+. .+.. ..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~----~N~~-------------~~----------- 95 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIE----LNGS-------------LL----------- 95 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHH----TT----------------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHH----hccc-------------cc-----------
Confidence 5679999999999999999999 67899999998 4432221111 0000 00
Q ss_pred CCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~e-ly~~~~~~~~fD~VvT~--FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..+++...-|.-+ +.......+.||+|+.+ .|- .......+++|.++|+|+|..+
T Consensus 96 --------~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 96 --------DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp ------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEE
T ss_pred --------cccccCcEEEecCcccccccccccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEE
Confidence 0112222222211 10000023689999976 343 3456789999999999988854
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=68.07 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=67.1
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||++||+|-++..+|+. |. .|++||++..++..++..++. + .+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N----------------------~~----- 106 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----N----------------------GL----- 106 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CC-----
Confidence 358999999999999999876 43 799999999998766532210 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+..+..+|..++.. . .+.||+|+. |.-.....+++...+.+++||++.
T Consensus 107 --------~~~~v~~~Da~~~l~--~-~~~fD~V~l----DP~Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 107 --------ENEKVFNKDANALLH--E-ERKFDVVDI----DPFGSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred --------CceEEEhhhHHHHHh--h-cCCCCEEEE----CCCCCcHHHHHHHHHHhcCCCEEE
Confidence 114577888766432 1 357999865 332223578888778899999986
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=62.92 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++...+|+|||+|+.+...|.. |+. +.|+|+...-...|.-+++.-.+. ...+ +..
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~--~~~~-----------------g~~--- 99 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR--MKHY-----------------GKR--- 99 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH--HHHC-----------------TB----
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH--HHHh-----------------hcc---
Confidence 5668999999999998877644 776 999999998776666444321110 0000 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
...+.+..|||++.......-..-|+|+.+.++= .+.+...|..+...||+|-+.|..-|+
T Consensus 100 --------~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 100 --------PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp ----------EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred --------cccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 1237788999986321000002347887654321 234667888999999999999975444
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00089 Score=61.04 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=29.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ 222 (412)
...+|||+||+.|..+..+.+++ ..|.|+|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999999999999999 78999999873
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.005 Score=62.92 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=88.6
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
...+|.|.|+||++-.+..+--+|.|++|...-++.++ .++ . |
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a---------~~~----------------------~-~----- 221 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAA---------PYL----------------------A-P----- 221 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhh---------hhh----------------------c-C-----
Confidence 46789999999999999995446999999987765322 000 0 1
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC--
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ-- 346 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~-- 346 (412)
++..+.|||+.- - | .=|+|+....|. |.++..++|+++++.|+|||..|-.-.++=. ++..+.
T Consensus 222 ------gV~~v~gdmfq~-~-P----~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~-e~~~dd~~ 288 (342)
T KOG3178|consen 222 ------GVEHVAGDMFQD-T-P----KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE-EDKFDDID 288 (342)
T ss_pred ------Ccceeccccccc-C-C----CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCCccccc
Confidence 145678898864 2 3 235999988775 5677999999999999999999954333222 111110
Q ss_pred -------------CCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 347 -------------EDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 347 -------------~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
......+.+..|...++.+.||....
T Consensus 289 s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 289 SSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCM 327 (342)
T ss_pred cceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeE
Confidence 00123456777777777777776544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00085 Score=61.96 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=49.2
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~ 271 (412)
.|||+.||.|..++.+|+.+-.|.|+|+++..+..++.- ..+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hN---------a~vY---------------------------- 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHN---------AEVY---------------------------- 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHH---------HHHT----------------------------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHH---------HHHc----------------------------
Confidence 699999999999999999999999999999999877622 1222
Q ss_pred CCCCCceeEEecccccccCCCCCCCC-ccEEEE
Q 015160 272 AGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVT 303 (412)
Q Consensus 272 ~~~~~~~s~~~GDF~ely~~~~~~~~-fD~VvT 303 (412)
....++.++.||+.++... ...+. +|+|+.
T Consensus 45 -Gv~~~I~~i~gD~~~~~~~-~~~~~~~D~vFl 75 (163)
T PF09445_consen 45 -GVADNIDFICGDFFELLKR-LKSNKIFDVVFL 75 (163)
T ss_dssp -T-GGGEEEEES-HHHHGGG-B------SEEEE
T ss_pred -CCCCcEEEEeCCHHHHHhh-ccccccccEEEE
Confidence 1124589999999997531 11112 799874
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=58.79 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=63.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.+|||+=||+|.+++|...||. .|+.+|.+...+...+.-+... .
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l----------------------------~---- 89 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKL----------------------------G---- 89 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH----------------------------T----
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHh----------------------------C----
Confidence 456999999999999999999997 7999999998875444222211 0
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEecccCCh---hh-HHHHHHHHH--HhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTA---HN-IVEYIEIIS--RILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~FFIDta---~N-i~~yl~~I~--~~LKPGG~wIN 332 (412)
..++...+.+|+...... ......||+| |+|.. .. +.+.++.+. .+|+++|++|-
T Consensus 90 ------~~~~~~v~~~d~~~~l~~~~~~~~~fDiI----flDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 90 ------LEDKIRVIKGDAFKFLLKLAKKGEKFDII----FLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp -------GGGEEEEESSHHHHHHHHHHCTS-EEEE----EE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred ------CCcceeeeccCHHHHHHhhcccCCCceEE----EECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 011256677776554321 0124789998 45543 11 356677776 78999999883
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0031 Score=67.45 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
....+|++|||.|....++|++- ..+.|+|++..-+..+. +.+.+. .
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~---~~~~~~-----------------------~----- 395 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL---KLAGEQ-----------------------N----- 395 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH---HHHHHc-----------------------C-----
Confidence 56789999999999999999995 67899999986553222 211110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC------hhh-H--HHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT------AHN-I--VEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt------a~N-i--~~yl~~I~~~LKPGG~wI 331 (412)
-.|+.++.+|+..+.. -...+++|.|..+| =|. ... + .++++.++++|||||.+-
T Consensus 396 --------l~N~~~~~~~~~~~~~-~~~~~sv~~i~i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 396 --------ITNFLLFPNNLDLILN-DLPNNSLDGIYILF-PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred --------CCeEEEEcCCHHHHHH-hcCcccccEEEEEC-CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 1235566667643321 12357899887766 111 111 1 268999999999999874
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0082 Score=59.31 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNH 233 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~ 233 (412)
.++.+|.+..|+. .+.+|||.|||.|.-++.+... -..++++|-|..|+.+++.|+..
T Consensus 20 ~vl~El~~r~p~f---~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 20 RVLSELRKRLPDF---RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHhCcCC---CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 4788888887754 5679999999999876655442 34689999999999999988753
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0071 Score=53.58 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=36.0
Q ss_pred CCCeEEEecCCCChhHHHHHH------cCCeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISH------LGFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~------~Gf~V~GnD~S~~ML~~s~f 229 (412)
+...|+|+|||.|+|+..||. .+..|.|+|.+..++..++.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 567999999999999999999 58899999999998766553
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0063 Score=62.35 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.-|||.|||.|-|.+.-|+.|. .|.++|-|. |.--|+.+.. +|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~-----------------~N---------------- 222 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVA-----------------SN---------------- 222 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHh-----------------cC----------------
Confidence 567899999999999999999997 699999986 6555554331 11
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++..+-|-..++.. .++.|++++- +.|-...-+..|+..= +.|||.|...
T Consensus 223 -----~~~~rItVI~GKiEdieL----PEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 223 -----NLADRITVIPGKIEDIEL----PEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred -----CccceEEEccCccccccC----chhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCccc
Confidence 112346777788777754 3789999975 3344444455666544 9999999874
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0033 Score=65.03 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=68.7
Q ss_pred CCeEEEecCCCChhHHHHHHc--CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+.+|||+-||+|-.+.+++++ |. .|++||+++..+...+.-+.. + .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----N----------------------~----- 93 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----N----------------------S----- 93 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------C-----
Confidence 468999999999999999998 53 799999999887644421110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..++.+..+|+..+... ..+.||+|. ||.-.....+++.+.+.+++||++.
T Consensus 94 --------~~~~~v~~~Da~~~l~~--~~~~fDvId----lDPfGs~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 94 --------VENIEVPNEDAANVLRY--RNRKFHVID----IDPFGTPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred --------CCcEEEEchhHHHHHHH--hCCCCCEEE----eCCCCCcHHHHHHHHHhcccCCEEE
Confidence 01256677887765431 135799884 4543334579999999999999886
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0062 Score=60.93 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=81.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHh--hhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSF--ILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~f--iln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+||++=|=||.++...|+.|. .|+++|.|..+|..++- .+|. +.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg----------------------------~~-- 172 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG----------------------------LD-- 172 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-----------------------------C--
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----------------------------CC--
Confidence 356999999999999999998897 69999999999976652 1221 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC----ChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID----TAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID----ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
...+.++++|.++....-...++||+||.= -|.- ...+..+.+....++|+|||+++..-
T Consensus 173 ---------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s----- 238 (286)
T PF10672_consen 173 ---------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS----- 238 (286)
T ss_dssp ---------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-----
T ss_pred ---------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc-----
Confidence 123788999988743210124689999852 1221 12345566788889999999988421
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCC--CEEEEEeeccccCC
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYG--FEFEKEKTIETTYT 381 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~G--Feii~e~~i~s~Y~ 381 (412)
. +-.++.+++.+++...+ +++++.-.....|.
T Consensus 239 --c--------s~~i~~~~l~~~~~~~a~~~~~~~~~~~p~df~ 272 (286)
T PF10672_consen 239 --C--------SHHISPDFLLEAVAEAAREVEFIERLGQPPDFP 272 (286)
T ss_dssp ------------TTS-HHHHHHHHHHHHHHCEEEEEEE------
T ss_pred --C--------CcccCHHHHHHHHHHhCccceEeeeeccccccc
Confidence 0 22456666666555433 45555434444443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=59.87 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=61.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+||++|..++.|+++|..|+|+|.+. |- .-+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~---~~L~------------------------------------- 249 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA---QSLM------------------------------------- 249 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC---Hhhh-------------------------------------
Confidence 678999999999999999999999999999664 21 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPG 327 (412)
...++....+|-..... . .+.+|.||+ |......+..+.|.+.|..|
T Consensus 250 -----~~~~V~h~~~d~fr~~p--~-~~~vDwvVc----Dmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 250 -----DTGQVEHLRADGFKFRP--P-RKNVDWLVC----DMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred -----CCCCEEEEeccCcccCC--C-CCCCCEEEE----ecccCHHHHHHHHHHHHhcC
Confidence 01235566666555432 1 467999886 66666677788888888776
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0086 Score=59.78 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=60.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.|-..-+ -++...||+.|-|||.|+..|-.+|-.|.++|+...|+.--.-.-+.
T Consensus 46 v~~~I~~ka~---~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~g-------------------- 102 (315)
T KOG0820|consen 46 VIDQIVEKAD---LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQG-------------------- 102 (315)
T ss_pred HHHHHHhccC---CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcC--------------------
Confidence 5555544332 34778999999999999999999999999999999997422210000
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~ 304 (412)
.+....++++.|||..... -.||.+|++
T Consensus 103 ------------------tp~~~kLqV~~gD~lK~d~-----P~fd~cVsN 130 (315)
T KOG0820|consen 103 ------------------TPKSGKLQVLHGDFLKTDL-----PRFDGCVSN 130 (315)
T ss_pred ------------------CCccceeeEEecccccCCC-----cccceeecc
Confidence 0112458999999987642 479999884
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0093 Score=62.20 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=88.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhh--hhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fi--ln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
.+.+||++=|=||..++..|..|. .|+++|+|-..|-.|+.- ||. +.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg----------------------------~~-- 266 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG----------------------------LD-- 266 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC----------------------------CC--
Confidence 477999999999999999999999 899999999998766521 111 10
Q ss_pred CCCCCCCCCCCceeEEecccccccCCC-CCCCCccEEEEe--ccc-------CChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDP-SQVGAWDAVVTC--FFI-------DTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~-~~~~~fD~VvT~--FFI-------Dta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
.....++.+|.+++.... ....+||+|+.= -|. +...+..+.+....++|+|||+++...-
T Consensus 267 ---------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 267 ---------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ---------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 122678999988865321 123489999852 122 1233444556677799999999995211
Q ss_pred cchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 336 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 336 Llyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
..+ .+.++-.+.|.+.+...|.....
T Consensus 338 -~~~----------~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 338 -SRH----------FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred -CCc----------cCHHHHHHHHHHHHHhcCCcEEE
Confidence 111 12234456666666667666554
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.017 Score=61.63 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~ 228 (412)
++.+|||.+||.|.=+..||.+- -.+++||+|...+....
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~ 155 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH 155 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 67899999999999999998861 27999999999886544
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0091 Score=62.94 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=84.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+=||.|.++..||+++..|.|+|++..++..|.+.... +
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~----n------------------------------ 338 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA----N------------------------------ 338 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHH----c------------------------------
Confidence 456899999999999999999999999999999999988844321 1
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-HH-HHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-IV-EYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i~-~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
...|+.|.+||..++.........+|+|+ +|...- .. +.++.|.+.-.+.=+.|..-|...
T Consensus 339 -----~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv----vDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl-------- 401 (432)
T COG2265 339 -----GIDNVEFIAGDAEEFTPAWWEGYKPDVVV----VDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL-------- 401 (432)
T ss_pred -----CCCcEEEEeCCHHHHhhhccccCCCCEEE----ECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH--------
Confidence 11237889898887654211124678885 575421 33 678888876666555565444311
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..|+.. +...|+++.+-.
T Consensus 402 ---------aRDl~~-L~~~gy~i~~v~ 419 (432)
T COG2265 402 ---------ARDLAI-LASTGYEIERVQ 419 (432)
T ss_pred ---------HHHHHH-HHhCCeEEEEEE
Confidence 234444 446788877754
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0064 Score=62.16 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=35.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
.+|||+|||+|.++..||+..-.|+|+|.|..|+..++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 36999999999999999998889999999999998776
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.046 Score=56.09 Aligned_cols=146 Identities=22% Similarity=0.247 Sum_probs=99.1
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHH--hhhhccc
Q 015160 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS--FILNHTE 235 (412)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~--filn~~~ 235 (412)
||.--..||.. +.+... .+..|||+=||-|.+++.+|+.|-. |.++|+.+..+-... ..||+.
T Consensus 171 Fsprl~~ER~R----va~~v~---------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v- 236 (341)
T COG2520 171 FSPRLSTERAR----VAELVK---------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV- 236 (341)
T ss_pred ECCCchHHHHH----HHhhhc---------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-
Confidence 88877788862 333322 4679999999999999999999987 999999987763221 112211
Q ss_pred ccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHH
Q 015160 236 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE 315 (412)
Q Consensus 236 ~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~ 315 (412)
.+.+..+.||.+++-. ..+.+|-|+-..+-++ .+
T Consensus 237 ---------------------------------------~~~v~~i~gD~rev~~---~~~~aDrIim~~p~~a----~~ 270 (341)
T COG2520 237 ---------------------------------------EGRVEPILGDAREVAP---ELGVADRIIMGLPKSA----HE 270 (341)
T ss_pred ---------------------------------------cceeeEEeccHHHhhh---ccccCCEEEeCCCCcc----hh
Confidence 1126778999998754 1278998876655443 37
Q ss_pred HHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 316 YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 316 yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|+.....+||+||+.-- |.+..+ ....+....+++.+..+.|++.....
T Consensus 271 fl~~A~~~~k~~g~iHy-----y~~~~e-----~~~~~~~~~~i~~~~~~~~~~~~v~~ 319 (341)
T COG2520 271 FLPLALELLKDGGIIHY-----YEFVPE-----DDIEERPEKRIKSAARKGGYKVEVLK 319 (341)
T ss_pred hHHHHHHHhhcCcEEEE-----Eeccch-----hhcccchHHHHHHHHhhccCcceEEE
Confidence 88888899999776641 222111 01223578899999999887665543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.01 Score=60.69 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=63.5
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|++.|+| +|.+|..+|+ .|++|+++|.|..=+..|+.+-. .+.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA------d~~------------------------- 214 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA------DHV------------------------- 214 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC------cEE-------------------------
Confidence 67899999875 8899999999 89999999999988765553210 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
+.....|+.+-. .+.||+| |+|+. ...+....+.||+||.++-+|-
T Consensus 215 -----------i~~~~~~~~~~~-----~~~~d~i-----i~tv~--~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 215 -----------INSSDSDALEAV-----KEIADAI-----IDTVG--PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred -----------EEcCCchhhHHh-----HhhCcEE-----EECCC--hhhHHHHHHHHhcCCEEEEECC
Confidence 000011222221 2349988 45555 5668888899999999997653
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.022 Score=55.39 Aligned_cols=168 Identities=23% Similarity=0.170 Sum_probs=84.6
Q ss_pred HHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhh
Q 015160 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fil 231 (412)
-+|.|... |. .+-..|...+.+..-.++.+||-+|+.+|..+-.++.- .=.|.|+|||+-+. +-++
T Consensus 47 eYR~W~P~----RS----KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~---rdL~ 115 (229)
T PF01269_consen 47 EYRVWNPF----RS----KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM---RDLL 115 (229)
T ss_dssp EEEEE-TT----T-----HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH---HHHH
T ss_pred ceeecCch----hh----HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH---HHHH
Confidence 47888764 22 35555555443333347789999999999987777665 33799999999663 2333
Q ss_pred hcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-
Q 015160 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA- 310 (412)
Q Consensus 232 n~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta- 310 (412)
+-++++. .|.| +-+|.+..+.=..--+..|+| |.|.+
T Consensus 116 ~la~~R~--NIiP------------------------------------Il~DAr~P~~Y~~lv~~VDvI----~~DVaQ 153 (229)
T PF01269_consen 116 NLAKKRP--NIIP------------------------------------ILEDARHPEKYRMLVEMVDVI----FQDVAQ 153 (229)
T ss_dssp HHHHHST--TEEE------------------------------------EES-TTSGGGGTTTS--EEEE----EEE-SS
T ss_pred HHhccCC--ceee------------------------------------eeccCCChHHhhcccccccEE----EecCCC
Confidence 3333221 2222 334544321100012345555 44654
Q ss_pred -hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 311 -HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 311 -~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
....-.+......||+||.++-. +.-.--|. ...| -+.=.+|+.. |++.||++++.-. ..+|-.|
T Consensus 154 p~Qa~I~~~Na~~fLk~gG~~~i~--iKa~siD~-t~~p---~~vf~~e~~~-L~~~~~~~~e~i~-LePy~~d 219 (229)
T PF01269_consen 154 PDQARIAALNARHFLKPGGHLIIS--IKARSIDS-TADP---EEVFAEEVKK-LKEEGFKPLEQIT-LEPYERD 219 (229)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE--EEHHHH-S-SSSH---HHHHHHHHHH-HHCTTCEEEEEEE--TTTSTT
T ss_pred hHHHHHHHHHHHhhccCCcEEEEE--EecCcccC-cCCH---HHHHHHHHHH-HHHcCCChheEec-cCCCCCC
Confidence 23445677777899999999842 11000110 0011 0111234444 5567999987543 3455443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0092 Score=61.15 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=35.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
.+|||++||+|.++..||+..-.|+|+|.|..|+..++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH
Confidence 47999999999999999998888999999999997766
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0068 Score=55.70 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (412)
.+..+..-+.+. .+.+++|+|||+|-|....+..+- .|.|+|+.+..|.+.+
T Consensus 36 M~~~Ih~Tygdi---Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 36 MLYTIHNTYGDI---EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT 88 (185)
T ss_pred HHHHHHhhhccc---cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh
Confidence 344444444433 577899999999999988887776 4889999999997665
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.033 Score=55.81 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=40.8
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHH
Q 015160 164 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSS 228 (412)
Q Consensus 164 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~ 228 (412)
+.|-+.--..+++.+.+ ...-.+..|||+|||+|-.+.-|+.. + ..|+|+|.|...+..|.
T Consensus 127 RpETEE~V~~Vid~~~~----~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNN----SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred CccHHHHHHHHHHHHhh----hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH
Confidence 44555433334444443 21124558999999999999887654 4 46899999999986655
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.014 Score=57.46 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=35.6
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fil 231 (412)
.+|||.=+|+|+.++++|.+|..|+++|-|..+...-+--|
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGL 130 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 48999999999999999999999999999998875544333
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.056 Score=53.98 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAG-LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
.+.+|+-+||| +---++.||++ |..|.++|+++..+..|+.+.+...
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------------------------- 170 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------------------------- 170 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------------------------------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-----------------------------
Confidence 34699999999 66668888876 4678999999999988876654100
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEE
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID-ta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....+|.|..+|..++.. .-..||+|+-.-..- ++++=.+.|+.+.+.++||..++
T Consensus 171 --------~L~~~m~f~~~d~~~~~~---dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 171 --------GLSKRMSFITADVLDVTY---DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp --------HH-SSEEEEES-GGGG-G---G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred --------cccCCeEEEecchhcccc---ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 112458999999887642 136899997665443 55567789999999999999988
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.091 Score=51.31 Aligned_cols=136 Identities=19% Similarity=0.223 Sum_probs=86.2
Q ss_pred chHHHHH-HHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeC
Q 015160 144 DVDKVRC-IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEF 219 (412)
Q Consensus 144 d~~kv~s-~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~ 219 (412)
.+-.+++ |+.+-..-|--.+..|.-+ +++-|-+.+ ...++|++|-=||.=+..+|.. +-.|+++|+
T Consensus 37 ~l~el~e~t~~~~~~~~~m~v~~d~g~----fl~~li~~~------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~ei 106 (237)
T KOG1663|consen 37 LLKELREATLTYPQPGSEMLVGPDKGQ----FLQMLIRLL------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEI 106 (237)
T ss_pred HHHHHHHHHhhcCCcccceecChHHHH----HHHHHHHHh------CCceEEEEecccCHHHHHHHHhcCCCceEEEEec
Confidence 3334443 3333335566677666653 566665554 4568999998777766666655 679999999
Q ss_pred CHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCC
Q 015160 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVG 296 (412)
Q Consensus 220 S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~~ 296 (412)
...-...+.-+...+ ....++++.+|+..+.-.. ..+.+
T Consensus 107 d~~~~~~~~~~~k~a--------------------------------------gv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 107 DADAYEIGLELVKLA--------------------------------------GVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred ChHHHHHhHHHHHhc--------------------------------------cccceeeeeecchhhhHHHHHhcCCCC
Confidence 987775543222111 1112367777776653210 11357
Q ss_pred CccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEE
Q 015160 297 AWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 297 ~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKPGG~wI 331 (412)
+||.| |||.- .|=..|++..-++||+||+++
T Consensus 149 tfDfa----FvDadK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 149 TFDFA----FVDADKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred ceeEE----EEccchHHHHHHHHHHHhhcccccEEE
Confidence 89988 67754 344589999999999999998
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.046 Score=53.38 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=34.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
++..||++|.|+|.++.+|++.|-.|+++|.+..+.-
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~ 66 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAK 66 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHH
Confidence 5679999999999999999999999999999998753
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.012 Score=57.44 Aligned_cols=80 Identities=25% Similarity=0.275 Sum_probs=48.1
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
.+|||.=+|+|+.|+-||..|+.|+|+|-|+.+...-..-|++..... ++.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~---------------------------~~~-- 127 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDP---------------------------ELL-- 127 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHST---------------------------TTH--
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCc---------------------------HhH--
Confidence 489999999999999999999999999999988755444444332110 000
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEE
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 302 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~Vv 302 (412)
.....+|+++.+|..++.. ...++||+|.
T Consensus 128 -~~~~~ri~l~~~d~~~~L~--~~~~s~DVVY 156 (234)
T PF04445_consen 128 -AEAMRRIQLIHGDALEYLR--QPDNSFDVVY 156 (234)
T ss_dssp -HHHHHHEEEEES-CCCHCC--CHSS--SEEE
T ss_pred -HHHHhCCEEEcCCHHHHHh--hcCCCCCEEE
Confidence 0012358999999988543 2368999995
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0033 Score=60.68 Aligned_cols=141 Identities=19% Similarity=0.206 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+.++||+|+|-|-.+..++..--.|.+.|+|..|.. +-+++ ...+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~-------rL~kk-----------------------~ynV---- 157 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRD-------RLKKK-----------------------NYNV---- 157 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHH-------HHhhc-----------------------CCce----
Confidence 5689999999999999888877667999999999963 11111 0110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC-CcEEEEecCcch-hhhh-ccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD-GGVWINLGPLLY-HFAD-LYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP-GG~wIN~GPLly-h~~~-~~g 345 (412)
+ .+ .|... .+=+||+|.+...||...+....++-|+.+|+| .|..|-.=-|-| ||-. ..+
T Consensus 158 ---------l--~~---~ew~~---t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~ 220 (288)
T KOG3987|consen 158 ---------L--TE---IEWLQ---TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTS 220 (288)
T ss_pred ---------e--ee---hhhhh---cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCC
Confidence 1 11 12211 134689887667899888899999999999999 777664111222 3322 112
Q ss_pred CCCCcc---cC---CCHHH----HHHHHHhCCCEEEEEeeccccCCC
Q 015160 346 QEDEMS---IE---LSLED----VKRVALHYGFEFEKEKTIETTYTT 382 (412)
Q Consensus 346 ~~~~~~---ie---LS~EE----L~~ll~~~GFeii~e~~i~s~Y~~ 382 (412)
+.+..+ ++ -++|| +.++++++||.++.. ...+|.-
T Consensus 221 g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw--TrlPYLC 265 (288)
T KOG3987|consen 221 GLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW--TRLPYLC 265 (288)
T ss_pred CCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh--hcCCeec
Confidence 111111 11 14443 346788999988653 2345643
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.059 Score=51.58 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=79.5
Q ss_pred cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccc
Q 015160 162 EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWN 241 (412)
Q Consensus 162 eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~ 241 (412)
-+..||-..|...++...+ ..+.|+|+|+|-|++--|..--+|.++|..+.-...|. .
T Consensus 15 L~D~eRlavF~~ai~~va~----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~--------e---- 72 (252)
T COG4076 15 LRDVERLAVFTSAIAEVAE----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAE--------E---- 72 (252)
T ss_pred hhhHHHHHHHHHHHHHHhh----------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhh--------h----
Confidence 3567887777766666543 46899999999999999998889999999996643332 1
Q ss_pred ccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh---HHHHHH
Q 015160 242 IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---IVEYIE 318 (412)
Q Consensus 242 I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N---i~~yl~ 318 (412)
.+++| ...+.+.+.||.++... +.-|+| .|=.|||+-= -...+.
T Consensus 73 -------------------N~~v~--------g~~n~evv~gDA~~y~f-----e~ADvv-icEmlDTaLi~E~qVpV~n 119 (252)
T COG4076 73 -------------------NLHVP--------GDVNWEVVVGDARDYDF-----ENADVV-ICEMLDTALIEEKQVPVIN 119 (252)
T ss_pred -------------------cCCCC--------CCcceEEEecccccccc-----ccccee-HHHHhhHHhhcccccHHHH
Confidence 11222 22358999999887422 445766 5667887731 234677
Q ss_pred HHHHhccCCcEEE
Q 015160 319 IISRILKDGGVWI 331 (412)
Q Consensus 319 ~I~~~LKPGG~wI 331 (412)
.+...||-.|..|
T Consensus 120 ~vleFLr~d~tii 132 (252)
T COG4076 120 AVLEFLRYDPTII 132 (252)
T ss_pred HHHHHhhcCCccc
Confidence 7777788888887
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.15 Score=50.78 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=76.0
Q ss_pred CeEEEecCCCC--hhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 191 PACLVPGAGLG--RLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 191 ~rVLvPGCGlG--RLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
...||+|||+= ..++|+|++ +.+|.=+|..+--+..++-+|....
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------------------------ 119 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------------------------ 119 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------------------------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------------------------
Confidence 37999999975 357999887 6789999999987776666653210
Q ss_pred CCCCCCCCCCCceeEEecccccccC---CCCCCCCcc-----EEEE---ecccCChhhHHHHHHHHHHhccCCcEEEE--
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS---DPSQVGAWD-----AVVT---CFFIDTAHNIVEYIEIISRILKDGGVWIN-- 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~---~~~~~~~fD-----~VvT---~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-- 332 (412)
.....++.+|+++.-. .|...+-+| +|+- ..|+...++....+.++...|.||.+++-
T Consensus 120 ---------~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 120 ---------RGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp ---------TSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred ---------CccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 0125688888886321 111123344 2322 24787777889999999999999999973
Q ss_pred ecC----cc-----hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 333 LGP----LL-----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 333 ~GP----Ll-----yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+.. .. -.|.. +..+ ..--|.+||.+++. ||++++.
T Consensus 191 ~t~d~~p~~~~~~~~~~~~--~~~~--~~~Rs~~ei~~~f~--g~elveP 234 (267)
T PF04672_consen 191 ATDDGAPERAEALEAVYAQ--AGSP--GRPRSREEIAAFFD--GLELVEP 234 (267)
T ss_dssp EB-TTSHHHHHHHHHHHHH--CCS------B-HHHHHHCCT--TSEE-TT
T ss_pred cCCCCCHHHHHHHHHHHHc--CCCC--ceecCHHHHHHHcC--CCccCCC
Confidence 111 00 00110 1111 23459999999994 9999873
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.57 Score=46.23 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=32.0
Q ss_pred eEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015160 192 ACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (412)
+||++-||.|.+..-|.+.|+++ .++|+....+.+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~ 39 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYE 39 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHH
Confidence 69999999999999999999984 68999998875433
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=48.92 Aligned_cols=39 Identities=23% Similarity=-0.031 Sum_probs=34.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s 227 (412)
.+.++||+=+|+|-|++|-+.||. .|+.+|.+...+.+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l 82 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKIL 82 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHH
Confidence 467999999999999999999996 699999999876543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.15 Score=47.82 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=78.5
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+|||+|+|.|--+.-||-. -.+++-+|-..--..+-+.+.. ...+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~----------------------------~L~L----- 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVR----------------------------ELGL----- 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH----------------------------HHT------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHH----------------------------HhCC-----
Confidence 8999999999998887665 4689999999877654333221 1111
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQED 348 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g~~~ 348 (412)
.|+..+++...+ . ...+.||+|++--+-. +...++-+..+||+||.+|- -||-
T Consensus 98 ------~nv~v~~~R~E~-~---~~~~~fd~v~aRAv~~----l~~l~~~~~~~l~~~G~~l~~KG~~------------ 151 (184)
T PF02527_consen 98 ------SNVEVINGRAEE-P---EYRESFDVVTARAVAP----LDKLLELARPLLKPGGRLLAYKGPD------------ 151 (184)
T ss_dssp ------SSEEEEES-HHH-T---TTTT-EEEEEEESSSS----HHHHHHHHGGGEEEEEEEEEEESS-------------
T ss_pred ------CCEEEEEeeecc-c---ccCCCccEEEeehhcC----HHHHHHHHHHhcCCCCEEEEEcCCC------------
Confidence 236777877666 1 1358999998765533 55778888899999999986 3431
Q ss_pred CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 349 EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.+=..++.+..++..|.+...
T Consensus 152 ---~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 152 ---AEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp ----HHHHHTHHHHHHCCCEEEEE
T ss_pred ---hHHHHHHHHhHHHHhCCEEee
Confidence 111245556667777777665
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.38 Score=45.83 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~ 228 (412)
+++.|++-...-......-+|++|||.|-..-.|++. | --..+.|+++..+.+..
T Consensus 28 LlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl 85 (209)
T KOG3191|consen 28 LLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATL 85 (209)
T ss_pred HHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHH
Confidence 5566654221111113457999999999998888876 3 34569999999986543
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.091 Score=45.82 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=44.2
Q ss_pred HHHHhcCcccChhHHhhchH--HHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 015160 153 RNIVRDWAAEGKTERDQCYK--PILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFS 220 (412)
Q Consensus 153 ~q~~RDWS~eG~~ER~~~y~--pIl~~L~~~~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S 220 (412)
+.++..|.+.-.+++- .|. -|..+|..+..... ..+...-.|+|||.|-|++-|.+.||.=.|+|.=
T Consensus 20 ~~lv~~W~E~TdP~K~-VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 20 RWLVDNWPESTDPQKH-VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHhCcccCCchhh-HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 4677789765444442 121 13344444332111 1256789999999999999999999999999953
|
; GO: 0008168 methyltransferase activity |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.21 Score=48.11 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=50.9
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--cccCC----h---------hhHHHHHHHHHHhccCCcEEEEecCcchhhhhc
Q 015160 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----A---------HNIVEYIEIISRILKDGGVWINLGPLLYHFADL 343 (412)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----a---------~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~ 343 (412)
.+..||.+++.. .-.++++|+|+|- |++.. . +=..+++++++++|||||.++.+... +
T Consensus 3 ~l~~gD~le~l~-~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~--~---- 75 (227)
T PRK13699 3 RFILGNCIDVMA-RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW--N---- 75 (227)
T ss_pred eEEechHHHHHH-hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc--c----
Confidence 467889887532 1236899999997 55420 0 11346789999999999999864211 0
Q ss_pred cCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 344 ~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
....+..++++.||.+...
T Consensus 76 -----------~~~~~~~al~~~GF~l~~~ 94 (227)
T PRK13699 76 -----------RVDRFMAAWKNAGFSVVGH 94 (227)
T ss_pred -----------cHHHHHHHHHHCCCEEeeE
Confidence 1234566788999997653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.074 Score=54.43 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
.+++.+.+.++.. +. +|||+=||.|.++..||+.+-.|+|+|.+..|+..|+
T Consensus 184 ~l~~~~~~~l~~~---~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 184 KLYEQALEWLDLS---KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhhcC---CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH
Confidence 3555555555432 23 7999999999999999999999999999999998776
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.72 Score=45.38 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=90.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
.+...|+. |.-. -++..+||+|+-||.++--+-++|. .|.|+|.++--|. +-|
T Consensus 66 KL~~ale~-F~l~--~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kL-------------------- 119 (245)
T COG1189 66 KLEKALEE-FELD--VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKL-------------------- 119 (245)
T ss_pred HHHHHHHh-cCcC--CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhH--------------------
Confidence 35555554 3311 2677999999999999999999997 6999999995542 101
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE-ecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-CFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT-~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
+.+ .|- +.|-.-+++.+... .-.+..|++++ .-||. +...|..+..+|+|||-.
T Consensus 120 ---R~d-~rV----------------~~~E~tN~r~l~~~-~~~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~ 174 (245)
T COG1189 120 ---RND-PRV----------------IVLERTNVRYLTPE-DFTEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDL 174 (245)
T ss_pred ---hcC-CcE----------------EEEecCChhhCCHH-HcccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceE
Confidence 000 000 22333344433221 11235566654 34654 456789999999999999
Q ss_pred EE-ecCcchhhhhccCC----CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 331 IN-LGPLLYHFADLYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 331 IN-~GPLlyh~~~~~g~----~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|- +=|.+-.-.+..|. .+........+++...++..||.+....
T Consensus 175 v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 175 VLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred EEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 96 45542211111110 1111234577899999999999998743
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.7 Score=44.66 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=82.1
Q ss_pred CCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+++|+|+|.|--+.-||- ..-.|+-+|-.--=. +|+-.-.. ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~---~FL~~~~~-------------------------eL~---- 115 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI---AFLREVKK-------------------------ELG---- 115 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH---HHHHHHHH-------------------------HhC----
Confidence 57999999999999988773 344577777654333 23221110 011
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCC-ccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~-fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
-+|+.++.+-..++-. ... ||+|++--|- ++...++-...+||+||.++. |.+...
T Consensus 116 -------L~nv~i~~~RaE~~~~----~~~~~D~vtsRAva----~L~~l~e~~~pllk~~g~~~~-----~k~~~~--- 172 (215)
T COG0357 116 -------LENVEIVHGRAEEFGQ----EKKQYDVVTSRAVA----SLNVLLELCLPLLKVGGGFLA-----YKGLAG--- 172 (215)
T ss_pred -------CCCeEEehhhHhhccc----ccccCcEEEeehcc----chHHHHHHHHHhcccCCcchh-----hhHHhh---
Confidence 1246777777666432 123 9999765442 355677888899999999874 222211
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
.=-..|.+..+...||.+++......++...
T Consensus 173 ------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~ 203 (215)
T COG0357 173 ------KDELPEAEKAILPLGGQVEKVFSLTVPELDG 203 (215)
T ss_pred ------hhhHHHHHHHHHhhcCcEEEEEEeecCCCCC
Confidence 1124567777888899999876545555443
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.086 Score=46.56 Aligned_cols=75 Identities=29% Similarity=0.339 Sum_probs=49.2
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccCChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccc
Q 015160 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSI 352 (412)
Q Consensus 277 ~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni----~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~i 352 (412)
.+.+..||+.+... .....||+|+-==|- ...|. .++|+.|+++++|||++.. |.
T Consensus 32 ~L~L~~gDa~~~l~--~l~~~~Da~ylDgFs-P~~nPelWs~e~~~~l~~~~~~~~~l~T-----ys------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLP--QLDARFDAWYLDGFS-PAKNPELWSEELFKKLARLSKPGGTLAT-----YS------------- 90 (124)
T ss_dssp EEEEEES-HHHHHH--HB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----S--------------
T ss_pred EEEEEEcHHHHHHH--hCcccCCEEEecCCC-CcCCcccCCHHHHHHHHHHhCCCcEEEE-----ee-------------
Confidence 37899999987543 123678877422110 12232 4799999999999999986 21
Q ss_pred CCCHHHHHHHHHhCCCEEEEEe
Q 015160 353 ELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 353 eLS~EEL~~ll~~~GFeii~e~ 374 (412)
+..-|++.|.++||++.+..
T Consensus 91 --~a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 91 --SAGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp ---BHHHHHHHHHCTEEEEEEE
T ss_pred --chHHHHHHHHHcCCEEEEcC
Confidence 12358899999999998755
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.4 Score=49.97 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCeEEEecCCCChhHHHHHHcCCe-----------------------------------------EEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGFI-----------------------------------------SQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~-----------------------------------------V~GnD~S~~ML~~s~ 228 (412)
+..++||=||.|.++.|.|..|-+ ..|.|++..|+..|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 357999999999999999999842 569999999998877
Q ss_pred hhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c-
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F- 306 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F- 306 (412)
.| +..+ ...+.+.|.++|+..+.. + -+.+|+||++= |
T Consensus 272 --~N-A~~A-----------------------------------Gv~d~I~f~~~d~~~l~~-~--~~~~gvvI~NPPYG 310 (381)
T COG0116 272 --AN-ARAA-----------------------------------GVGDLIEFKQADATDLKE-P--LEEYGVVISNPPYG 310 (381)
T ss_pred --HH-HHhc-----------------------------------CCCceEEEEEcchhhCCC-C--CCcCCEEEeCCCcc
Confidence 22 1111 223448999999998864 2 27899999883 2
Q ss_pred --cCChhhHHHH----HHHHHHhccCCcEEEEec
Q 015160 307 --IDTAHNIVEY----IEIISRILKDGGVWINLG 334 (412)
Q Consensus 307 --IDta~Ni~~y----l~~I~~~LKPGG~wIN~G 334 (412)
|.+...+... .+++.+.++--+.+|-.+
T Consensus 311 eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 311 ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 5444434422 334445566666666443
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.66 Score=45.07 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=87.7
Q ss_pred eEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
+|+++=||.|.+..-|.+.||. |.++|++.....+.+ .|+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~--~N~~------------------------------------ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYK--ANFP------------------------------------ 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHH--HHHT------------------------------------
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhh--hccc------------------------------------
Confidence 7899999999999999999997 569999998765433 2321
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-EecCc
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NLGPL 336 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-------------FIDta~Ni~~yl~~I~~~LKPGG~wI-N~GPL 336 (412)
....+|+.++....-.. ..|+++..+ +-|.-..+...+-.+.+.+||.-+++ |+-.|
T Consensus 44 --------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l 114 (335)
T PF00145_consen 44 --------EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGL 114 (335)
T ss_dssp --------EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGG
T ss_pred --------ccccccccccccccccc-cceEEEeccCCceEeccccccccccccchhhHHHHHHHhhccceEEEeccccee
Confidence 12334555443210001 477776554 22332335544444445678976666 44333
Q ss_pred chhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 015160 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 404 (412)
Q Consensus 337 lyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~~ 404 (412)
+-.- -.-..+.+.+.|++.|+.+...-.....|+.-. .-...|+|+.|+..
T Consensus 115 ~~~~-----------~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ------~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 115 LSSK-----------NGEVFKEILEELEELGYNVQWRVLNAADYGVPQ------NRERVFIVGIRKDL 165 (335)
T ss_dssp GTGG-----------GHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSB------E-EEEEEEEEEGGG
T ss_pred eccc-----------cccccccccccccccceeehhccccHhhCCCCC------ceeeEEEEEECCCC
Confidence 2210 013468888999999998875554455665432 23678899999854
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.26 E-value=1 Score=43.05 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=75.6
Q ss_pred EEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 193 CLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 193 VLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
|.|+||-=|.|+..|+++|. .|.+.|++..-|..|+-.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~------------------------------------ 44 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY------------------------------------ 44 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------------------------------
Confidence 67999999999999999998 6899999999987666433211
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCc
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 350 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~ 350 (412)
...+.+....||=++... ..+..|+||-+=. -..-+.+-|+.....++..-.||- -|
T Consensus 45 --~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGM--GG~lI~~ILe~~~~~~~~~~~lIL-qP--------------- 101 (205)
T PF04816_consen 45 --GLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGM--GGELIIEILEAGPEKLSSAKRLIL-QP--------------- 101 (205)
T ss_dssp --T-TTTEEEEE-SGGGG-----GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEE-EE---------------
T ss_pred --CCcccEEEEECCcccccC---CCCCCCEEEEecC--CHHHHHHHHHhhHHHhccCCeEEE-eC---------------
Confidence 112347788888555433 1233788875421 011144555555555555445552 22
Q ss_pred ccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 351 SIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 351 ~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.-...+|++.|.+.||.|+.|..
T Consensus 102 --~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 102 --NTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp --SS-HHHHHHHHHHTTEEEEEEEE
T ss_pred --CCChHHHHHHHHHCCCEEEEeEE
Confidence 23578999999999999999874
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.6 Score=47.98 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=33.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC----eEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAGLGRLALEISHLGF----ISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf----~V~GnD~S~~ML~~s~ 228 (412)
.++.+|||+.++-|.=+..||.... .|+++|.|..=|-.-+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH
Confidence 4678999999999999888888865 4899999997764433
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.46 Score=45.63 Aligned_cols=132 Identities=20% Similarity=0.152 Sum_probs=79.9
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+.+|.+.+.- -+++..|+|+||--|.-+..++++.-. |.|+|+-+ | +
T Consensus 33 L~el~~k~~i--~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-~------------~--------------- 82 (205)
T COG0293 33 LLELNEKFKL--FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-M------------K--------------- 82 (205)
T ss_pred HHHHHHhcCe--ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-c------------c---------------
Confidence 4455554532 236789999999999999999888543 88999866 2 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC-----CCCCCCccEEEEecc--------cCChhh---HHH
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCFF--------IDTAHN---IVE 315 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~-----~~~~~~fD~VvT~FF--------IDta~N---i~~ 315 (412)
.-.++.++++||++-... .......|+|++=.. +|.+.- ...
T Consensus 83 ----------------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~ 140 (205)
T COG0293 83 ----------------------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCEL 140 (205)
T ss_pred ----------------------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHH
Confidence 001267888888852210 012334699986321 232211 123
Q ss_pred HHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 316 YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 316 yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.++....+|+|||.|+.- . |. | =..+++...+++ .|+.++-..
T Consensus 141 a~~~a~~vL~~~G~fv~K---~--fq---g--------~~~~~~l~~~~~-~F~~v~~~K 183 (205)
T COG0293 141 ALEFALEVLKPGGSFVAK---V--FQ---G--------EDFEDLLKALRR-LFRKVKIFK 183 (205)
T ss_pred HHHHHHHeeCCCCeEEEE---E--Ee---C--------CCHHHHHHHHHH-hhceeEEec
Confidence 456666899999999961 1 11 1 124566666655 588887553
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.33 Score=52.46 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=65.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
.++.+||+.|||. |..+...|+. |..|.+.|.+..=+..++-+ . + ....+-+ ..++....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-G-A---~~v~i~~---------~e~~~~~~---- 224 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-G-A---EFLELDF---------EEEGGSGD---- 224 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C-C---eEEEecc---------cccccccc----
Confidence 3678999999996 5566666655 99999999999887655421 0 0 0000000 00000000
Q ss_pred CCCCCCCCCCCceeEEecccc----cccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015160 266 DIHPASAGITEGFSMCGGDFV----EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~----ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G 334 (412)
.+. ..+. .|+. +.+. ...+.+|+|+++-.+...+...-..+...+.+||||+.+.+|
T Consensus 225 -------gya--~~~s-~~~~~~~~~~~~--~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 225 -------GYA--KVMS-EEFIKAEMALFA--EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred -------chh--hhcc-hhHHHHHHHHHH--hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 000 0000 1111 1111 012469999999887654333334589999999999999754
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.095 Score=45.33 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=32.6
Q ss_pred eEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHH
Q 015160 192 ACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 228 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~ 228 (412)
.|||+|||.|.++..++++|.. |.++|.+..|+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 3899999999999999999875 999999999986444
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.026 Score=49.11 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=41.9
Q ss_pred CccEEEEec---ccCC--h-hhHHHHHHHHHHhccCCcEEEEecCcchh-hhhccCCC-----CCcccCCCHHHHHHHHH
Q 015160 297 AWDAVVTCF---FIDT--A-HNIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVAL 364 (412)
Q Consensus 297 ~fD~VvT~F---FIDt--a-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh-~~~~~g~~-----~~~~ieLS~EEL~~ll~ 364 (412)
+||+|++.- +|+. . +-+..+|+.|+.+|+|||++| +-|--|. |....... .-..+++-.++....+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 478886542 3332 2 348899999999999999999 4454443 11110000 01257788888888887
Q ss_pred h--CCCEEEEEe
Q 015160 365 H--YGFEFEKEK 374 (412)
Q Consensus 365 ~--~GFeii~e~ 374 (412)
. +||...++-
T Consensus 80 ~~evGF~~~e~~ 91 (110)
T PF06859_consen 80 EPEVGFSSVEEL 91 (110)
T ss_dssp STTT---EEEEE
T ss_pred hcccceEEEEEc
Confidence 6 799987643
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.056 Score=52.71 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
...|+|.-||-|.-+..+|.+|-.|.++|+++.-+.+|+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak 133 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR 133 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh
Confidence 457999999999999999999999999999998887776
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.26 Score=49.48 Aligned_cols=133 Identities=21% Similarity=0.198 Sum_probs=84.7
Q ss_pred cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcc
Q 015160 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHT 234 (412)
Q Consensus 158 DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~ 234 (412)
+|.-.=..--+..|.|=+..|...+.- +++.+||+-|.|.|.++..||+.= =++...||-..-. ...+
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra---~ka~--- 147 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA---EKAL--- 147 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH---HHHH---
Confidence 355433333456787777777777653 378899999999999999999873 3677888844221 1111
Q ss_pred cccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHH
Q 015160 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 314 (412)
Q Consensus 235 ~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~ 314 (412)
.+|. .--+ ++++.+..-|....-. ......+|+| |||.. +.-
T Consensus 148 ---eeFr-------------------~hgi----------~~~vt~~hrDVc~~GF-~~ks~~aDaV----FLDlP-aPw 189 (314)
T KOG2915|consen 148 ---EEFR-------------------EHGI----------GDNVTVTHRDVCGSGF-LIKSLKADAV----FLDLP-APW 189 (314)
T ss_pred ---HHHH-------------------HhCC----------CcceEEEEeecccCCc-cccccccceE----EEcCC-Chh
Confidence 1221 1112 2346667766554211 1124567777 78864 466
Q ss_pred HHHHHHHHhccCCc-EEEEecCcc
Q 015160 315 EYIEIISRILKDGG-VWINLGPLL 337 (412)
Q Consensus 315 ~yl~~I~~~LKPGG-~wIN~GPLl 337 (412)
+.+.-.+++||.+| ++.+|.|.+
T Consensus 190 ~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 190 EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred hhhhhhHHHhhhcCceEEeccHHH
Confidence 88899999999866 888898864
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.44 Score=46.08 Aligned_cols=166 Identities=22% Similarity=0.250 Sum_probs=88.8
Q ss_pred HHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhh
Q 015160 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn 232 (412)
=+|.|-.. |. .+-..+..-+.+..-+++.+||=+|+-+|..+-.++.- | =.+.|+|||+.+. +-+|+
T Consensus 50 eYR~Wnp~----RS----KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~---reLl~ 118 (231)
T COG1889 50 EYREWNPR----RS----KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM---RELLD 118 (231)
T ss_pred ceeeeCcc----hh----HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH---HHHHH
Confidence 47888754 32 23344443333222347889999999999987766654 3 2589999999986 23455
Q ss_pred cccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCCh
Q 015160 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTA 310 (412)
Q Consensus 233 ~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta 310 (412)
-+.+.. .|+| +.+|.+.. |. .--+..|+| |.|.|
T Consensus 119 ~a~~R~--Ni~P------------------------------------IL~DA~~P~~Y~--~~Ve~VDvi----y~DVA 154 (231)
T COG1889 119 VAEKRP--NIIP------------------------------------ILEDARKPEKYR--HLVEKVDVI----YQDVA 154 (231)
T ss_pred HHHhCC--Ccee------------------------------------eecccCCcHHhh--hhcccccEE----EEecC
Confidence 444321 3333 22343321 11 011335555 55655
Q ss_pred h-h-HHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 311 H-N-IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 311 ~-N-i~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
+ | ..=.+.....-||+||..+-. +.-.--+. ..+ +-+.=.+|+..|. ..||++.+.-. ..+|-.|
T Consensus 155 Qp~Qa~I~~~Na~~FLk~~G~~~i~--iKArSIdv-T~d---p~~vf~~ev~kL~-~~~f~i~e~~~-LePye~D 221 (231)
T COG1889 155 QPNQAEILADNAEFFLKKGGYVVIA--IKARSIDV-TAD---PEEVFKDEVEKLE-EGGFEILEVVD-LEPYEKD 221 (231)
T ss_pred CchHHHHHHHHHHHhcccCCeEEEE--EEeecccc-cCC---HHHHHHHHHHHHH-hcCceeeEEec-cCCcccc
Confidence 2 2 334677778899999966521 11000111 001 1122234555544 66899976542 3456554
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.69 Score=45.74 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=38.1
Q ss_pred eeEEecccccccCCCCCCCCccEEEEe--cccCCh--------------hhHHHHHHHHHHhccCCcEEEE
Q 015160 278 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA--------------HNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 278 ~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta--------------~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
-.++.||.+++.. ....++||+|+|- |++... .-+.+++..++++|||||.++-
T Consensus 9 ~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4678899888532 1235799999994 665210 1134688999999999999874
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.29 Score=52.97 Aligned_cols=116 Identities=21% Similarity=0.214 Sum_probs=76.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL------A~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
.|+..|..+.|+........|+++|+|.|=|+-.. ..+--.+.++|=.+..+..-. |. +
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~---~~--n---------- 415 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ---NR--N---------- 415 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh---hh--c----------
Confidence 47888888888765444567789999999886443 222334566666554443211 10 0
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHh
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRI 323 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~ 323 (412)
.+ .-..++.++-+||+++.. | .++-|++|+-. |=|..- =.+.|.-+-+.
T Consensus 416 --------~~----------------~W~~~Vtii~~DMR~w~a-p--~eq~DI~VSELLGSFGDNEL-SPECLDG~q~f 467 (649)
T KOG0822|consen 416 --------FE----------------CWDNRVTIISSDMRKWNA-P--REQADIIVSELLGSFGDNEL-SPECLDGAQKF 467 (649)
T ss_pred --------hh----------------hhcCeeEEEeccccccCC-c--hhhccchHHHhhccccCccC-CHHHHHHHHhh
Confidence 00 012347889999999863 2 47889998764 545432 23899999999
Q ss_pred ccCCcEEE
Q 015160 324 LKDGGVWI 331 (412)
Q Consensus 324 LKPGG~wI 331 (412)
|||.|+.|
T Consensus 468 LkpdgIsI 475 (649)
T KOG0822|consen 468 LKPDGISI 475 (649)
T ss_pred cCCCceEc
Confidence 99999999
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.42 Score=48.64 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=33.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|||. |.++..+|+. |. .|.+++.+..++..++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~ 226 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR 226 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 567899999998 9898888776 76 5999999999976544
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.046 Score=45.34 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=40.6
Q ss_pred EEecCCCChhHHHHHHc----C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 194 LVPGAGLGRLALEISHL----G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 194 LvPGCGlGRLa~eLA~~----G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
|++|+..|+-+..|++. + ..+.++|.-.. . ....+. ++..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~---~~~~~~-------------------------~~~~------ 45 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D---EQAQEI-------------------------IKKA------ 45 (106)
T ss_dssp --------------------------EEEESS-----------------------------------------G------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c---cccchh-------------------------hhhc------
Confidence 67898899987777653 2 26888888774 0 000000 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC---hhhHHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt---a~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....++.++.||+.+.... ...+++|+| |||- .+.+...++.+...|+|||++|
T Consensus 46 ----~~~~~~~~~~g~s~~~l~~-~~~~~~dli----~iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 46 ----GLSDRVEFIQGDSPDFLPS-LPDGPIDLI----FIDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp ----GG-BTEEEEES-THHHHHH-HHH--EEEE----EEES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred ----CCCCeEEEEEcCcHHHHHH-cCCCCEEEE----EECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 1123488999999876421 112456655 6774 3667788999999999999987
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.18 Score=48.47 Aligned_cols=76 Identities=24% Similarity=0.173 Sum_probs=50.2
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC--CC-CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ--ED-EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~--~~-~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.++|.+++.-+|.++ +..+....+++.|||||+++- .-|-.+- |. .+ ..---++..-+++..+++||+++-
T Consensus 129 ~~~yhdmh~k~i~~~-~A~~vna~vf~~LKPGGv~~V----~dH~a~p-G~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 129 AQNYHDMHNKNIHPA-TAAKVNAAVFKALKPGGVYLV----EDHRADP-GSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred chhhhhhhccccCcc-hHHHHHHHHHHhcCCCcEEEE----EeccccC-CCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 345555555455533 456889999999999999983 3343321 21 11 112246888899999999999999
Q ss_pred Eeecc
Q 015160 373 EKTIE 377 (412)
Q Consensus 373 e~~i~ 377 (412)
|+.+.
T Consensus 203 eS~il 207 (238)
T COG4798 203 ESEIL 207 (238)
T ss_pred eehhh
Confidence 88554
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.17 Score=50.89 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=68.0
Q ss_pred HhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 167 RDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 167 R~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
|-...+...++|... | .+.-+||.|||-|....- .-..-+.|.|++...+-.|+ +.
T Consensus 29 r~~~Wp~v~qfl~~~-~-----~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak-------~~--------- 84 (293)
T KOG1331|consen 29 RAAPWPMVRQFLDSQ-P-----TGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAK-------RS--------- 84 (293)
T ss_pred ccCccHHHHHHHhcc-C-----CcceeeecccCCcccCcC--CCcceeeecchhhhhccccc-------cC---------
Confidence 433444455555543 2 356799999999976221 11224678888876542211 11
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHHHHHh
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRI 323 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~Ni~~yl~~I~~~ 323 (412)
+ .-.++.+|++.+. ....+||++++.-+ +-|..-....++...++
T Consensus 85 ----------~-------------------~~~~~~ad~l~~p---~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~ 132 (293)
T KOG1331|consen 85 ----------G-------------------GDNVCRADALKLP---FREESFDAALSIAVIHHLSTRERRERALEELLRV 132 (293)
T ss_pred ----------C-------------------CceeehhhhhcCC---CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 0 0135667888764 34689998887654 44555567889999999
Q ss_pred ccCCcEE
Q 015160 324 LKDGGVW 330 (412)
Q Consensus 324 LKPGG~w 330 (412)
|||||--
T Consensus 133 lrpgg~~ 139 (293)
T KOG1331|consen 133 LRPGGNA 139 (293)
T ss_pred hcCCCce
Confidence 9999974
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.88 Score=50.09 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=51.7
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccC---ChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCC
Q 015160 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 349 (412)
Q Consensus 277 ~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni----~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~ 349 (412)
.+.++.||+.+... .-...+|+| |+| .+.|. .++|+.|+++++|||+|+.+
T Consensus 148 ~l~l~~gd~~~~~~--~~~~~~d~~----~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~---------------- 205 (662)
T PRK01747 148 TLDLWFGDANELLP--QLDARADAW----FLDGFAPAKNPDMWSPNLFNALARLARPGATLATF---------------- 205 (662)
T ss_pred EEEEEecCHHHHHH--hccccccEE----EeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe----------------
Confidence 37789999987543 112456766 556 33332 47899999999999999962
Q ss_pred cccCCCHHHHHHHHHhCCCEEEEE
Q 015160 350 MSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 350 ~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
-+..-|++-|..+||++.+.
T Consensus 206 ----t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 206 ----TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ----ehHHHHHHHHHHcCCeeeec
Confidence 24567888999999999864
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=91.95 E-value=1 Score=47.51 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=28.8
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA-~~Gf~V~GnD~S~~ML~~ 226 (412)
.+.+|++.|+|. |+.+..++ ..|..|..+|.++.-+..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~ 240 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQ 240 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHH
Confidence 577999999995 66655444 459999999999866543
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.6 Score=46.51 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.||| +|.++..+|+. |. .|.+.|.+..-+..++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~ 211 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR 211 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH
Confidence 46789999876 57777777765 88 5889999987775444
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.95 Score=44.43 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~ 225 (412)
++.+||+-|||. |..+..+|+. |+ .+.+.+-|..+..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~ 204 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLA 204 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 467899988876 7888878764 88 7999999988764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.73 Score=44.74 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| +|.++..+|+ +|..|.+.+-|..++..+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~ 205 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELA 205 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 56789998887 5889888887 499999999999886433
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=91.31 E-value=3.6 Score=41.79 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fil 231 (412)
+++++-+.+... ++..++|-=+|.|.++..|+++ .-.|.|+|.+..++..++..|
T Consensus 8 ll~Evl~~L~~~---~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 8 LLDEVVEGLNIK---PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred hHHHHHHhcCcC---CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 445555555322 4568999999999999999876 257999999999998776443
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.8 Score=45.42 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-C-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-F-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.-.+||++|-|-|--+.||-+.- + +++-+|+.+.|+..++... +.++ -|+-+.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~--vlr~------------~N~~sf----------- 343 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHAT--VLRA------------LNQGSF----------- 343 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhh--Hhhh------------hccCCc-----------
Confidence 45689999999999999999884 4 6999999999998777211 0000 011011
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-H-----HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-I-----VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i-----~~yl~~I~~~LKPGG~wIN 332 (412)
...+++.+..|...+-. ...+.||+|+--+ .|.... + .++..-..+.|+++|++|-
T Consensus 344 -------~dpRv~Vv~dDAf~wlr--~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 344 -------SDPRVTVVNDDAFQWLR--TAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred -------cCCeeEEEeccHHHHHH--hhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 12347778888777654 2357899886433 332211 1 2466677788999999994
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.25 Score=45.75 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~f 229 (412)
+..+.+|+|+|-||.+..-|+.| +..+|+|+.+-.+..|++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 66799999999999999999999 789999999977766663
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.7 Score=40.21 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| .|..+..+++ .|..|.+.+-+.....
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~ 172 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLE 172 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 56799999998 4888777776 4899999999986653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.84 Score=47.13 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.6
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML 224 (412)
++.+||++|+| .|+.+...++ +|..|+.+|.+..-+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~ 203 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL 203 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45689999998 6777666554 599999999987543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=88.89 E-value=8.6 Score=38.73 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.8
Q ss_pred EEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHH
Q 015160 193 CLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 228 (412)
Q Consensus 193 VLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~ 228 (412)
||++=||.|.+..-|.+.||++. ++|+......+.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~ 37 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYE 37 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHH
Confidence 57888999999999999999865 7999998765433
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.3 Score=45.03 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=71.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 188 ESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
....+|||+|-|-|....+.+++ -. +.-+|+...-+..+.. + +
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~----------y-----------------------~ 165 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQ----------Y-----------------------L 165 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHH----------H-----------------------h
Confidence 36779999999999999999998 33 3344555433222221 0 1
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhhH--HHHHHHHHHhccCCcEEEEecCcch
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNI--VEYIEIISRILKDGGVWINLGPLLY 338 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni--~~yl~~I~~~LKPGG~wIN~GPLly 338 (412)
|.+..+ -...++.++-||=..++.. ...+.||+|+|-- -+-.+.++ ..|++.+.+.||+||+.+..|-.+|
T Consensus 166 p~la~g--y~~~~v~l~iGDG~~fl~~-~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 166 PTLACG--YEGKKVKLLIGDGFLFLED-LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred HHHhcc--cCCCceEEEeccHHHHHHH-hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 111100 0122467778886665542 2268999998753 22233343 3699999999999999999877665
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.29 E-value=4.8 Score=39.58 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=69.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
||...+.+.+. .++.|||.+|=|.|-.+-.+-++- +.=.-+|.-+.-+.- +....
T Consensus 89 piMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr---mr~~g----------------- 144 (271)
T KOG1709|consen 89 PIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR---MRDWG----------------- 144 (271)
T ss_pred HHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH---HHhcc-----------------
Confidence 57777666554 267899999999998877765543 333445555544311 00000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
+ ....++-.+.|-..++-.. -.++.||-|.---|-..-+++.++.+.+.++|||||++-
T Consensus 145 w--------------------~ek~nViil~g~WeDvl~~-L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 145 W--------------------REKENVIILEGRWEDVLNT-LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred c--------------------ccccceEEEecchHhhhcc-ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 0 0112344455544443211 125779999654454555788899999999999999996
Q ss_pred E
Q 015160 332 N 332 (412)
Q Consensus 332 N 332 (412)
-
T Consensus 204 y 204 (271)
T KOG1709|consen 204 Y 204 (271)
T ss_pred E
Confidence 3
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.01 E-value=2.1 Score=42.74 Aligned_cols=38 Identities=11% Similarity=-0.197 Sum_probs=27.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc---CCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL---GFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~---Gf~V~GnD~S~~ML~~ 226 (412)
++.+||+.|||. |.++..+|++ |..|.++|.+..-+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~ 204 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL 204 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH
Confidence 567999999864 5556677763 4579999998765543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.96 E-value=2.9 Score=41.61 Aligned_cols=37 Identities=11% Similarity=-0.071 Sum_probs=28.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| +|.++..+|+. |..|.+++.+..=+.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~ 203 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARR 203 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 56799999965 56667777665 888999998876543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.4 Score=42.36 Aligned_cols=31 Identities=39% Similarity=0.405 Sum_probs=24.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeC
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFISQGNEF 219 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~ 219 (412)
++.+||+.|+|. |.++..+|+. |..|.+++-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 567899999874 7777777765 889999886
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.8 Score=42.45 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.6
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+|.++|+|+ |.++..|++.|+.|.+.|.+...+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~ 37 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCE 37 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 688999997 6789999999999999999987653
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.71 E-value=7.3 Score=39.43 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=85.2
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
..+++++=||.|.+..-|...||++ .++|+..+.+.+-+ .|+. .
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~--~n~~----------~----------------------- 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYK--ANFP----------H----------------------- 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHH--HhCC----------C-----------------------
Confidence 4689999888888888888889985 59999998875433 2221 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-Eec
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NLG 334 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-------------FIDta~Ni~~yl~~I~~~LKPGG~wI-N~G 334 (412)
-.+..+|..++.........+|+|+.-+ +-|+-..+.-.+..+-..++|.-.++ |+.
T Consensus 48 ---------~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~ 118 (328)
T COG0270 48 ---------GDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENVK 118 (328)
T ss_pred ---------CceeechHhhcChhhccccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecCc
Confidence 0112234333322100001566666432 44555556555666667788833333 332
Q ss_pred CcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 015160 335 PLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 335 PLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
-|+.+ -.-.+++|++.|++.||.+...-.....|.... .-..+|.|+.++
T Consensus 119 gl~~~------------~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ------~ReRvfiig~~~ 168 (328)
T COG0270 119 GLLSS------------KGQTFDEIKKELEELGYGVEFNILNAADYGVPQ------SRERVFIVGFRR 168 (328)
T ss_pred hHHhc------------CchHHHHHHHHHHHcCCcchHheeeHHhcCCCC------CccEEEEEEecC
Confidence 23222 123789999999999998433222233443221 125667776543
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.60 E-value=0.79 Score=47.53 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=43.1
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
++.+=+..|...... .+++.-|+||=.|||.|.+--|..|.-|.|-|+.+-|+-
T Consensus 191 SmDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 191 SMDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred ccchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence 344556666665432 237889999999999999999999999999999999863
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=87.42 E-value=1.6 Score=39.98 Aligned_cols=51 Identities=25% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.|-+.+.+ ++..||||=||.|..+..-.++|-...|+|++......|+
T Consensus 180 l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 180 LIERLIKASTN----PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHhhhc----cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 44444444432 5679999999999999999999999999999998876553
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=46 Score=35.83 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=33.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (412)
...+++|+=||.|.+..-|-..|+.| .++|+......+.+
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence 46799999999999998888889975 58999998765433
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=2.2 Score=42.98 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+ |.|.++..+|+. |..|.+.+-|..-+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 5779999998 599999988876 999999998876653
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=86.48 E-value=2.4 Score=41.60 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=28.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~ 226 (412)
++.+||+.|+| +|..+..+|+. |. .|.+++-+......
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~ 207 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDL 207 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 56789998876 57788888776 75 78888888766543
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=86.30 E-value=1.3 Score=43.90 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=52.4
Q ss_pred cchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCC
Q 015160 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFS 220 (412)
Q Consensus 143 ~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S 220 (412)
.|-..++..++++.+--. ...||-..+..+.+++....+ ...+|||+|||+==|++.+... +..+.|.|+.
T Consensus 66 ~D~e~~~~~~r~lL~~Ha--ST~ERl~~Ld~fY~~if~~~~-----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID 138 (251)
T PF07091_consen 66 GDPEAIRAWCRRLLAGHA--STRERLPNLDEFYDEIFGRIP-----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID 138 (251)
T ss_dssp THHHHHHHHHHHHHHTSH--HHHCCGGGHHHHHHHHCCCS--------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB
T ss_pred CCHHHHHHHHHHHHhhcc--chhhhhhhHHHHHHHHHhcCC-----CCchhhhhhccCCceehhhcccCCCcEEEEEeCC
Confidence 444444544554444332 345676666666666665544 4679999999999998877666 5788999999
Q ss_pred HHHHHHHHhhh
Q 015160 221 YYMMICSSFIL 231 (412)
Q Consensus 221 ~~ML~~s~fil 231 (412)
..|+.+-+-.+
T Consensus 139 ~~~ve~l~~~l 149 (251)
T PF07091_consen 139 SQLVEFLNAFL 149 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99987655444
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=86.13 E-value=2.2 Score=42.75 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=29.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s 227 (412)
++.+||+.||| .|.++..+|+. |.. |.++|-+..-+..+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 57799999875 36677777775 885 99999988766443
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.09 E-value=2.9 Score=41.01 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=29.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| +|..+..||+. |+.|.++.-|.....
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~ 197 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLE 197 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHH
Confidence 56689998887 48888888877 999999988877653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=3.1 Score=46.83 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=61.4
Q ss_pred CeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 191 PACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~----~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
..|+|+|+|.|-|+-..-+ .| ++|.++|=....++ +++.+-.....|. + ..
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~---~tllr~~N~eeW~---------n---~~-------- 758 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAA---FTRMRWANDPEWT---------Q---LA-------- 758 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHH---HHHHHHhcccccc---------c---cc--------
Confidence 5689999999999654422 23 57889999844221 1111100111221 0 00
Q ss_pred CCCCCCCCCCCCceeEEecccccccCC--------CCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccC----CcE
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSD--------PSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKD----GGV 329 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~--------~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKP----GG~ 329 (412)
...+..+.++..||+++... |...+++|+||+-. |=|..- =.+.|.-+.+.||+ +|+
T Consensus 759 -------~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNEL-SPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 759 -------YTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNEL-SPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred -------ccCCCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccC-CHHHHHHHHHhhhhhcccccc
Confidence 01123478899999998431 11224799999864 544321 12777777888876 665
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=86.00 E-value=3.8 Score=39.91 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=31.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| .|+.+..+|+. |+.|.+.+-+..++.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~ 200 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRE 200 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56789999997 89998888777 999999999988764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.98 E-value=2.4 Score=42.08 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=29.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+| +|..+..+|+. |. .|.+++-+..-+..++
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 56789998876 66777777766 88 4889999887664433
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.7 Score=40.95 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=47.3
Q ss_pred CCCccEEEE--ecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 295 VGAWDAVVT--CFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 295 ~~~fD~VvT--~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
..+||.|++ |.|+|..+ ...+++|..+|+|.|.-+-+.|- -.=|.+.....+..+||.+..
T Consensus 101 q~tFDiIlaADClFfdE~h--~sLvdtIk~lL~p~g~Al~fsPR---------------Rg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHH--ESLVDTIKSLLRPSGRALLFSPR---------------RGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred hCcccEEEeccchhHHHHH--HHHHHHHHHHhCcccceeEecCc---------------ccchHHHHHHHHHhceeEEEe
Confidence 468999985 56777653 57899999999999996644431 124677788888899999887
Q ss_pred Ee
Q 015160 373 EK 374 (412)
Q Consensus 373 e~ 374 (412)
++
T Consensus 164 ~e 165 (201)
T KOG3201|consen 164 EE 165 (201)
T ss_pred cc
Confidence 54
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=84.84 E-value=3.4 Score=40.67 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=26.0
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML 224 (412)
++.+||+.||| .|.++..+|+. |.. |.+.|.....+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl 182 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR 182 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 34579999875 57778878764 887 55678777655
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=84.71 E-value=2.9 Score=41.28 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+-|+ |.|.++..+|+. |..|.+..-|..-.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~ 189 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKV 189 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 6789999996 789999888876 99999988877654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=84.70 E-value=3 Score=44.84 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-ChhHHH-HHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGAGL-GRLALE-ISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~e-LA~~Gf~V~GnD~S~~M 223 (412)
.+.+|++.|+|. |+.+.. +...|..|.++|.+..-
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r 289 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPIC 289 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 567999999983 333222 23348899999988743
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=84.62 E-value=4 Score=43.01 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=26.4
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eL-A~~Gf~V~GnD~S~~ML 224 (412)
.+.+|++.|+|. |+.+..+ ...|..|.++|.++.-.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA 231 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence 567999999996 5554433 44488999999888543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=84.31 E-value=2 Score=41.61 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.| -|+|.++..+|+. |..|.+..-|..-+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~ 181 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV 181 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 567999998 4789999888876 88999988877654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=84.23 E-value=2.5 Score=38.83 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML 224 (412)
.+.+|.++|+ |+++..+|++ |.+|.+.|-+..--
T Consensus 35 ~g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 35 RGKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp TTSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred CCCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCChh
Confidence 5779999976 5666666655 89999999988653
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=83.75 E-value=2.9 Score=41.07 Aligned_cols=34 Identities=32% Similarity=0.228 Sum_probs=28.6
Q ss_pred CeEEEecC--CCChhHHHHHHc-CC-eEEEEeCCHHHH
Q 015160 191 PACLVPGA--GLGRLALEISHL-GF-ISQGNEFSYYMM 224 (412)
Q Consensus 191 ~rVLvPGC--GlGRLa~eLA~~-Gf-~V~GnD~S~~ML 224 (412)
.+||+-|+ |+|..+..+|+. |. .|.+++-|..-+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~ 193 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC 193 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 79999986 799999988876 98 799998887654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=83.56 E-value=6.8 Score=37.11 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+.|+|. |..+..+|+. |.. |.+++-+...+.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~ 136 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE 136 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH
Confidence 667899998875 7777777775 888 999998887764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=4.4 Score=41.26 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=26.8
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCHH
Q 015160 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S~~ 222 (412)
.+.+|.++|+|. |+ +|..|+..|+.|.+.|.+..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~ 180 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN 180 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 456899999987 54 56777788999999998763
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=83.06 E-value=5.7 Score=39.55 Aligned_cols=39 Identities=15% Similarity=-0.070 Sum_probs=33.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s 227 (412)
++.+|||..+|-|.=+..||.+-. .++++|++..-+..-
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l 126 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRL 126 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHH
Confidence 567899999999999999988854 799999999887543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=83.00 E-value=4.2 Score=44.18 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=64.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|+|. |..+..+++ +|..|.+.|.+..-+..++- +. ..+ +.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG-----a~~---------------------v~v~- 214 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG-----AEF---------------------LELD- 214 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC-----CeE---------------------Eecc-
Confidence 568999999986 455555554 49999999999976544331 10 000 0000
Q ss_pred CCCCCCCCCCc-eeEEeccccc--ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 267 IHPASAGITEG-FSMCGGDFVE--VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 267 v~p~~~~~~~~-~s~~~GDF~e--ly~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
..... ....+ -...-.++.+ .+..+.+...+|+|+|+-.|...+...-..+.+-+.+|||++.|.+
T Consensus 215 ~~e~g-~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 215 FKEEG-GSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred ccccc-cccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 00000 00000 0111112221 0000112356999999988887655444577788999999999964
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=82.59 E-value=6.2 Score=38.40 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+.|+| +|..+..+|+. |+. |.+.+-|.....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 198 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56789998876 47777777666 777 888888887754
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.29 E-value=1.3 Score=47.95 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=34.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+..+||.-||||-.+.-+|+.--.|.|+|+|+..+.-|+
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhh
Confidence 357899999999999999999889999999999876555
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=81.89 E-value=21 Score=35.07 Aligned_cols=145 Identities=13% Similarity=0.142 Sum_probs=80.4
Q ss_pred CeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
..|+.+|||+=.-++.|... |..+.=+|+-. ++..-+.++.....
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~--------------------------------- 128 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGA--------------------------------- 128 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCC---------------------------------
Confidence 36999999999999988543 44555555554 33222222211000
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCcc-----EEEE---ecccCChhhHHHHHHHHHHhccCCcEEEE--ecCcch-
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWD-----AVVT---CFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLY- 338 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD-----~VvT---~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GPLly- 338 (412)
....+..++..|+.+-....-....|| +++. .+||+.. .+...|+.|.+...||+.++- ++|+--
T Consensus 129 ---~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~ 204 (260)
T TIGR00027 129 ---EPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYVRPLDGE 204 (260)
T ss_pred ---CCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEeccccchh
Confidence 011235666677652100000011233 2221 1467765 488999999999889988874 455311
Q ss_pred --h--hhhc----cC-CCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 339 --H--FADL----YG-QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 339 --h--~~~~----~g-~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
. .... .+ ......+.++.+|+..++...||+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 205 WRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 0 0000 00 0112345678999999999999998764
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.54 E-value=3.5 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHhccCCcEEEEe
Q 015160 311 HNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 311 ~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
.-|..||+....+|.|||.+|-+
T Consensus 202 k~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 202 KPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred chHHHHHHHHHHhccCCCeEEEE
Confidence 34778999999999999999864
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.45 E-value=7.5 Score=39.37 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=59.3
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+||+.| .|.|.++..||+. |+.+.+.--|..=...+. +.- ..+.
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~---~lG---Ad~v------------------------ 191 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK---ELG---ADHV------------------------ 191 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH---hcC---CCEE------------------------
Confidence 578999998 5789999999887 777777766664432111 100 0000
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
+.+...||.+--........||+|+ |+.- -+++....+.|++||.++.+|.+
T Consensus 192 ------------i~y~~~~~~~~v~~~t~g~gvDvv~-----D~vG--~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 192 ------------INYREEDFVEQVRELTGGKGVDVVL-----DTVG--GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred ------------EcCCcccHHHHHHHHcCCCCceEEE-----ECCC--HHHHHHHHHHhccCCEEEEEecC
Confidence 1222333333111001124699994 4432 26778889999999999987653
|
|
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=81.34 E-value=5.1 Score=39.44 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=25.3
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
..+|+|+.+. . ....++.+.+.|+++|.||++|.
T Consensus 234 ~~~d~vld~~-----g-~~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 234 RGVDVVIEAV-----G-IPATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCEEEECC-----C-CHHHHHHHHHhccCCcEEEEecc
Confidence 4589987653 1 12357888899999999999874
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.22 E-value=2.7 Score=45.08 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhh
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn 232 (412)
...-|||+|.|||-|+..-++.|. .|+++|.=-.|.-+|+.|..
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~ 110 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMH 110 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHh
Confidence 456789999999999999999987 49999999999999998864
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=81.17 E-value=6.9 Score=42.19 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~S~~M 223 (412)
.+.+|++.|+|. ||. |..+...|..|...|.+..-
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~ 289 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC 289 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 678999999985 444 22333458899999887643
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=81.05 E-value=6.4 Score=38.66 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=28.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+.|+|. |..+..+|+. |.. |.++.-+..+..
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~ 198 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA 198 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 567899988765 7777777765 887 989988876653
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.86 E-value=13 Score=36.45 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~ 38 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAV 38 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 689999997 467899999999999999987554
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.78 E-value=9.4 Score=37.69 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+-|+|. |.++..+|+. |.. |.+.+-+.....
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~ 201 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 567899987765 8888888876 887 888888876653
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.58 E-value=5.1 Score=40.79 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHhcCcccChhHH--hhch---HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHH
Q 015160 152 IRNIVRDWAAEGKTER--DQCY---KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 226 (412)
Q Consensus 152 L~q~~RDWS~eG~~ER--~~~y---~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~ 226 (412)
+.|+-..|..|-..|- +-++ ..|.+++++++++.. ....-+..-.-|.|.+.-+|++.||+|.|.|++..|..+
T Consensus 209 ~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~-~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 209 ALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELG-LAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred HHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhc-CCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHH
Confidence 3456667876544443 1122 236677777777552 345567888999999999999999999999999999764
Q ss_pred HH
Q 015160 227 SS 228 (412)
Q Consensus 227 s~ 228 (412)
-+
T Consensus 288 r~ 289 (359)
T KOG2872|consen 288 RR 289 (359)
T ss_pred HH
Confidence 33
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.47 E-value=1.2 Score=37.53 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=54.0
Q ss_pred CCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCc
Q 015160 199 GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG 277 (412)
Q Consensus 199 GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~ 277 (412)
|.|.++..+|+. |..|.++|-+..=+..++-+- + .. ++.. +.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G--a----~~----~~~~-----~~---------------------- 43 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG--A----DH----VIDY-----SD---------------------- 43 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--E----SE----EEET-----TT----------------------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc--c----cc----cccc-----cc----------------------
Confidence 578888888876 999999999997665443110 0 00 0000 00
Q ss_pred eeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 278 ~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
.. ....+.++.. ...+|+|+.| .. ....++...++|+|||.++.+|-
T Consensus 44 ~~-~~~~i~~~~~----~~~~d~vid~-----~g-~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 44 DD-FVEQIRELTG----GRGVDVVIDC-----VG-SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp SS-HHHHHHHHTT----TSSEEEEEES-----SS-SHHHHHHHHHHEEEEEEEEEESS
T ss_pred cc-cccccccccc----cccceEEEEe-----cC-cHHHHHHHHHHhccCCEEEEEEc
Confidence 00 0111223322 2579999654 32 24789999999999999998664
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=80.17 E-value=5 Score=40.45 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=29.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+| +|.++..+|+. |. .|.++|.+..-+..++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 56789999875 36667777764 88 5999999987765443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=80.10 E-value=22 Score=35.34 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=27.6
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~ 36 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAV 36 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 588889886 457888899999999999998764
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 412 | |||
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 4e-06 |
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Length = 265 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-06
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 291 DPSQVGAWDAVVTCFFIDTA-HNIVEY---IEIISRILKDGGVWINLGPLLYHFADLYGQ 346
+ D +++ +D A ++ Y + + +LK GG + + L + + G+
Sbjct: 151 GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY-MIGE 209
Query: 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKS 403
+ S+ L E V+ G+ E+ + I Y++ N RK
Sbjct: 210 QKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSST----TSNNEGLFSLVGRKPG 262
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.76 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.76 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.75 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.75 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.75 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.75 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.75 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.74 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.74 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.73 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.73 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.73 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.73 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.72 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.72 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.71 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.71 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.71 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.71 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.7 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.7 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.69 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.69 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.67 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.67 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.67 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.66 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.65 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.65 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.65 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.64 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.64 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.64 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.64 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.64 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.64 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.64 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.64 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.64 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.63 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.63 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.63 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.62 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.62 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.62 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.62 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.62 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.6 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.6 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.6 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.6 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.6 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.6 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.58 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.58 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.56 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.56 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.54 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.54 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.53 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.53 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.53 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.53 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.53 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.51 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.5 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.5 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.49 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.49 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.48 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.48 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.48 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.48 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.48 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.47 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.47 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.46 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.45 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.45 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.44 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.44 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.44 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.44 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.43 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.43 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.43 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.42 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.41 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.41 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.41 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.41 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.4 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.4 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.4 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.39 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.39 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.39 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.39 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.38 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.38 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.38 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.38 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.38 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.37 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.37 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.36 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.36 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.36 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.35 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.35 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.35 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.35 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.35 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.34 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.33 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.33 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.33 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.32 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.32 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.31 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.31 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.31 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.31 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.3 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.3 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.29 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.29 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.29 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.29 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.29 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.28 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.28 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.28 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.28 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.27 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.26 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.26 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.26 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.26 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.26 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.25 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.25 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.25 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.25 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.25 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.25 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.24 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.23 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.23 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.22 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.22 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.22 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.22 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.22 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.22 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.21 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.21 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.19 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.19 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.17 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.17 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.17 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.17 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.17 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.16 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.16 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.15 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.15 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.15 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.14 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.13 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.13 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.12 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.12 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.12 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.12 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.11 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.11 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.11 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.1 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.1 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.1 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.1 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.09 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.09 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.07 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.07 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.07 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.07 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.06 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.02 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.02 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.02 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.01 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.01 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.0 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.0 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.99 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.99 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.99 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.99 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.98 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.98 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.97 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.97 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.96 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.96 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.96 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.94 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.94 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.93 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.93 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.93 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.91 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.91 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.89 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.89 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.89 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.87 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.87 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.86 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.85 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.83 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.81 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.8 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.78 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.77 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.75 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.74 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.73 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.72 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.64 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.63 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.61 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.6 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.58 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.56 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.56 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.54 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.52 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.51 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.49 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.46 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.45 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.39 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.39 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.38 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.35 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.31 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.3 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.28 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.28 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.28 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.21 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.18 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.16 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.14 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.11 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.07 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.06 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.06 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.05 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.05 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.04 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.03 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.01 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.94 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.92 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.92 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.86 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.64 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.63 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.46 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.43 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.41 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.29 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.09 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.0 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.99 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 96.86 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.66 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.65 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.5 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.39 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.21 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.08 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.9 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.64 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.39 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.34 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.27 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 94.81 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.81 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.74 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.55 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.34 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.28 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 94.25 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.2 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.05 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.01 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.8 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.77 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 93.52 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.5 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.41 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.27 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.22 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.14 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.85 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.69 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.68 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.65 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.64 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.51 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.47 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.33 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.22 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.13 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.12 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.04 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.95 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 91.95 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.67 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.67 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 91.63 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 91.56 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.54 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.03 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.89 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.87 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.82 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 90.8 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 90.74 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.72 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.68 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.63 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.43 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 90.39 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.26 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 90.16 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.89 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 89.79 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 89.78 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 89.55 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 89.44 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 89.33 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 89.01 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 88.28 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 87.71 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 87.67 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 87.56 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 87.33 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 87.25 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 86.91 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 86.75 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 86.58 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 86.57 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 86.25 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 86.14 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 85.62 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 85.36 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 85.25 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.97 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 84.88 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 84.75 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 84.69 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 84.54 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 84.54 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 83.79 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 83.77 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 83.59 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 83.51 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 83.45 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 83.08 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 82.96 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 82.81 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 82.51 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 82.45 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 82.43 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 82.4 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 82.21 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 82.14 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 81.87 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 81.51 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 81.38 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 81.35 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 81.28 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 80.89 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 80.7 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 80.64 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 80.6 |
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=162.61 Aligned_cols=215 Identities=16% Similarity=0.127 Sum_probs=124.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
..+++.+.+.+... ..++.+|||+|||+|.++..+++.|+ .|+|+|+|..||..++-.++.. ...+..-|.+...+
T Consensus 39 ~~~~~~~~~~~~~~-~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~--~~~~d~s~~~~~~~ 115 (263)
T 2a14_A 39 KFNLECLHKTFGPG-GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE--PGAYDWTPAVKFAC 115 (263)
T ss_dssp HHHHHHHHHHHSTT-SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC--TTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC--CCcccchHHHHHHH
Confidence 34556666665321 22567999999999999999999998 5999999999998877433210 00111001000000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcee-EEecccccccCC-CCCCCCccEEEEecccCC----hhhHHHHHHHHHHhc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFS-MCGGDFVEVYSD-PSQVGAWDAVVTCFFIDT----AHNIVEYIEIISRIL 324 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s-~~~GDF~ely~~-~~~~~~fD~VvT~FFIDt----a~Ni~~yl~~I~~~L 324 (412)
+...... .+ ++.. .....++. ++.+|+++.... +...++||+|++.+.++. .++....++.|+++|
T Consensus 116 ~~~~~~~---~~--~~~~---~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~L 187 (263)
T 2a14_A 116 ELEGNSG---RW--EEKE---EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL 187 (263)
T ss_dssp HHTTCGG---GH--HHHH---HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE
T ss_pred hcCCCCc---ch--hhHH---HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 0000000 00 0000 00001133 788898873211 112468999999986653 367788999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccc-eEEEEEEEcC
Q 015160 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYF-TAFWTMRKKS 403 (412)
Q Consensus 325 KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~-~~f~VarK~~ 403 (412)
||||++|-.+++--.+.. .|........++.++|+.+++++||++++.......|..+ + ..|. ..|++|||+.
T Consensus 188 KPGG~li~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~---~--~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 188 KPGGHLVTTVTLRLPSYM-VGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVT---N--AANNGVCCIVARKKP 261 (263)
T ss_dssp EEEEEEEEEEESSCCEEE-ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTT---T--CCCCCEEEEEEEECC
T ss_pred CCCcEEEEEEeecCccce-eCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccc---c--CCCCceEEEEEEecC
Confidence 999999975533111100 1111111245799999999999999998865433333221 1 2343 3466899975
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=155.27 Aligned_cols=176 Identities=13% Similarity=0.072 Sum_probs=122.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+...
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~---------------------------------- 113 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAK---------------------------------- 113 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-----------------------------------
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 3569999999999999999999999999999999998776332110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc----h------
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL----Y------ 338 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl----y------ 338 (412)
....++.++.+|+.++.. ...++||+|++...+...++...+|+.++++|||||+++-..+.. +
T Consensus 114 ----~~~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (285)
T 4htf_A 114 ----GVSDNMQFIHCAAQDVAS--HLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAG 187 (285)
T ss_dssp ----CCGGGEEEEESCGGGTGG--GCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTT
T ss_pred ----CCCcceEEEEcCHHHhhh--hcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhc
Confidence 011347899999988752 235899999998877767788899999999999999998532211 0
Q ss_pred --hh--hhccC---CCCCcccCCCHHHHHHHHHhCCCEEEEEeec--cccCCCCccc-------------------cccc
Q 015160 339 --HF--ADLYG---QEDEMSIELSLEDVKRVALHYGFEFEKEKTI--ETTYTTNPRS-------------------MMQN 390 (412)
Q Consensus 339 --h~--~~~~g---~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i--~s~Y~~d~~s-------------------m~~~ 390 (412)
.+ ..... ........++.++++++++++||+++....+ ...|..+... -+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~ 267 (285)
T 4htf_A 188 NFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALLELETRYCRQEPYIT 267 (285)
T ss_dssp CHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEEEEEEESSSGGGCSSTTHHHHTHHHHHHHHHHHTTSTTGGG
T ss_pred CHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCceeeeeeEEEeeecccccccCcccHHHHHHHHHHhcCCChHHH
Confidence 00 00000 0111124579999999999999999986643 3344433211 1223
Q ss_pred ccceEEEEEEEcCc
Q 015160 391 RYFTAFWTMRKKSV 404 (412)
Q Consensus 391 ~Y~~~f~VarK~~~ 404 (412)
...-..+||||+..
T Consensus 268 ~~~~~~~varK~~~ 281 (285)
T 4htf_A 268 LGRYIHVTARKPQS 281 (285)
T ss_dssp GCSEEEEEEECCCC
T ss_pred HHhheEEEEEcCCc
Confidence 34556889999853
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=155.54 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=99.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||++|+.|+|+|+|..||..|+-.... . .. ..... ...
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~---~--~~----~~~~~----------~~~----- 77 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGE---Q--PH----ITSQG----------DFK----- 77 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCS---C--SE----EEEET----------TEE-----
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccC---C--cc----ccccc----------ccc-----
Confidence 467999999999999999999999999999999999877622110 0 00 00000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCC-CCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQV-GAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~-~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
.....++.+.++|+.++.. .. ++||+|++...+. ..++...++++++++|||||+++-+. +.|..... +
T Consensus 78 ---~~~~~~v~~~~~d~~~l~~---~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~-~~~~~~~~-~ 149 (203)
T 1pjz_A 78 ---VYAAPGIEIWCGDFFALTA---RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT-LEYDQALL-E 149 (203)
T ss_dssp ---EEECSSSEEEEECCSSSTH---HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE-ESSCSSSS-S
T ss_pred ---cccCCccEEEECccccCCc---ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE-EecCcccc-C
Confidence 0001247899999988642 22 6899999764332 23456789999999999999833211 11211111 1
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++ .+.++.+|+++++.+ ||+++...
T Consensus 150 ~~---~~~~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 150 GP---PFSVPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp SC---CCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred CC---CCCCCHHHHHHHhcC-CcEEEEec
Confidence 12 356899999999988 99988754
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=146.90 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhcCcccC----hhHHh-hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 015160 146 DKVRCIIRNIVRDWAAEG----KTERD-QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFS 220 (412)
Q Consensus 146 ~kv~s~L~q~~RDWS~eG----~~ER~-~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S 220 (412)
++++....+....|.... -..|. .....+++.+... ++.+|||+|||+|+++..|+++|..|+|+|+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s 83 (227)
T 3e8s_A 11 DALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGR-------QPERVLDLGCGEGWLLRALADRGIEAVGVDGD 83 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHT-------CCSEEEEETCTTCHHHHHHHTTTCEEEEEESC
T ss_pred HHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcC-------CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCC
Confidence 455556666666665421 11111 1222344444432 45799999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCC-CCCCcc
Q 015160 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS-QVGAWD 299 (412)
Q Consensus 221 ~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~-~~~~fD 299 (412)
..|+..++.. .+..+..+|+.++...+. ..++||
T Consensus 84 ~~~~~~a~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 84 RTLVDAARAA---------------------------------------------GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHHHHT---------------------------------------------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHHHHHh---------------------------------------------cccccchhhHHhhcccccccCCCcc
Confidence 9999765511 013456667666521111 235699
Q ss_pred EEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc----------c-C---C-CCCcccCCCHHHHHHHHH
Q 015160 300 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL----------Y-G---Q-EDEMSIELSLEDVKRVAL 364 (412)
Q Consensus 300 ~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~----------~-g---~-~~~~~ieLS~EEL~~ll~ 364 (412)
+|++.+.+. ..+...+++.++++|||||++|-..|..+..... + + . .+.....++.++++++++
T Consensus 119 ~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (227)
T 3e8s_A 119 LICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALD 197 (227)
T ss_dssp EEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHH
T ss_pred EEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHH
Confidence 999988777 6778899999999999999999643322111100 0 0 0 011123459999999999
Q ss_pred hCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 015160 365 HYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 365 ~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
++||+++.......+-...+ ...|+||+|+
T Consensus 198 ~aGf~~~~~~~~~~~~~~~~--------~~~~~va~k~ 227 (227)
T 3e8s_A 198 MAGLRLVSLQEPQHPQSAVP--------QSLLMVAERH 227 (227)
T ss_dssp HTTEEEEEEECCCCTTCSSC--------SCEEEEEEEC
T ss_pred HcCCeEEEEecCCCCCCCCc--------eeEEEEeecC
Confidence 99999988543111111112 3567788874
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=149.04 Aligned_cols=190 Identities=16% Similarity=0.085 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHH
Q 015160 147 KVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 226 (412)
Q Consensus 147 kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~ 226 (412)
.++.........|...... .+.+..+...++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..
T Consensus 12 ~~~~~~~~~~~~y~~~~~~------~~~~~~~~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~ 80 (211)
T 3e23_A 12 DTLRFYRGNATAYAERQPR------SATLTKFLGELP-----AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAE 80 (211)
T ss_dssp HHHHHHHHSHHHHTTCCCC------CHHHHHHHTTSC-----TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccch------hHHHHHHHHhcC-----CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHH
Confidence 3344444444445443222 234455554443 45699999999999999999999999999999999976
Q ss_pred HHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc
Q 015160 227 SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF 306 (412)
Q Consensus 227 s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF 306 (412)
++..+ ++.+..+|+.++. ..++||+|++...
T Consensus 81 a~~~~---------------------------------------------~~~~~~~d~~~~~----~~~~fD~v~~~~~ 111 (211)
T 3e23_A 81 ASRRL---------------------------------------------GRPVRTMLFHQLD----AIDAYDAVWAHAC 111 (211)
T ss_dssp HHHHH---------------------------------------------TSCCEECCGGGCC----CCSCEEEEEECSC
T ss_pred HHHhc---------------------------------------------CCceEEeeeccCC----CCCcEEEEEecCc
Confidence 55211 0345667887754 2589999998765
Q ss_pred cCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCC-CEEEEEe-eccccCCC
Q 015160 307 IDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEKEK-TIETTYTT 382 (412)
Q Consensus 307 IDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~G-Feii~e~-~i~s~Y~~ 382 (412)
+... +++..+|+.++++|||||++|-..+....... .........++.++++++++++| |+++... .....|..
T Consensus 112 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~ 189 (211)
T 3e23_A 112 LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR--DKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQ 189 (211)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--CTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTS
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--cccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCC
Confidence 5433 47889999999999999999853221110000 00111123579999999999999 9999855 33344443
Q ss_pred CcccccccccceEEEEEEEcCccc
Q 015160 383 NPRSMMQNRYFTAFWTMRKKSVTI 406 (412)
Q Consensus 383 d~~sm~~~~Y~~~f~VarK~~~~~ 406 (412)
. +..+.++.++++...
T Consensus 190 ~--------~~~wl~~~~~~~~~~ 205 (211)
T 3e23_A 190 E--------LAQFLHVSVRKPELE 205 (211)
T ss_dssp C--------EEEEEEEEEECCCC-
T ss_pred C--------CceEEEEEEecCccc
Confidence 2 234455555554443
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-17 Score=149.02 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=115.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
..+++.|.++++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-..
T Consensus 41 ~~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------------------- 95 (242)
T 3l8d_A 41 STIIPFFEQYVK-----KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG-------------------- 95 (242)
T ss_dssp TTHHHHHHHHSC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT--------------------
T ss_pred HHHHHHHHHHcC-----CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc--------------------
Confidence 357888888775 4569999999999999999999999999999999987655110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...++.+..+|+.++.. ..++||+|++...+...++...+++.++++|||||+++
T Consensus 96 ----------------------~~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 150 (242)
T 3l8d_A 96 ----------------------EGPDLSFIKGDLSSLPF---ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYAC 150 (242)
T ss_dssp ----------------------CBTTEEEEECBTTBCSS---CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------ccCCceEEEcchhcCCC---CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEE
Confidence 01237889999887632 36899999998877777888999999999999999998
Q ss_pred Ee--cCcchh----hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NL--GPLLYH----FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~--GPLlyh----~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-. +|.... +....+. +.....++.++++++++++||+++...
T Consensus 151 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 151 IAILGPTAKPRENSYPRLYGK-DVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp EEEECTTCGGGGGGGGGGGTC-CCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EEEcCCcchhhhhhhhhhccc-cccccCCCHHHHHHHHHHcCCEEEEee
Confidence 53 222111 1111111 111234799999999999999999865
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=152.53 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=112.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.+..+++.|.... ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-..
T Consensus 29 ~~~~~~~~l~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------ 84 (250)
T 2p7i_A 29 MHPFMVRAFTPFF------RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL------------------ 84 (250)
T ss_dssp HHHHHHHHHGGGC------CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS------------------
T ss_pred HHHHHHHHHHhhc------CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhh------------------
Confidence 3455666666543 3458999999999999999999999999999999997665110
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHH-HhccCCc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS-RILKDGG 328 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~-~~LKPGG 328 (412)
+ .++.+..+|+.++.. .++||+|++...|...++...+|++++ ++|||||
T Consensus 85 ---------------~----------~~v~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG 135 (250)
T 2p7i_A 85 ---------------K----------DGITYIHSRFEDAQL----PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGG 135 (250)
T ss_dssp ---------------C----------SCEEEEESCGGGCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEE
T ss_pred ---------------h----------CCeEEEEccHHHcCc----CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCC
Confidence 0 026789999988632 578999999887777777889999999 9999999
Q ss_pred EEEEecCcchhhhhc----cCC------------CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 329 VWINLGPLLYHFADL----YGQ------------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 329 ~wIN~GPLlyh~~~~----~g~------------~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+++-..|........ .+. .......++.++++++++++||++++..
T Consensus 136 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 136 RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp EEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 998644432111000 000 0011235799999999999999998854
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=155.12 Aligned_cols=199 Identities=15% Similarity=0.192 Sum_probs=121.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..+++.|+ .|+|+|+|..|+..++..+........+ -|++...++........ ++.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~ 128 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDW--SPVVTYVCDLEGNRMKG-----PEK 128 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCC--HHHHHHHHHHTTTCSCH-----HHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccc--hhhhhhhhcccccccch-----HHH
Confidence 567999999999999999999999 9999999999998776433211000000 00000000000000000 000
Q ss_pred CCCCCCCCCce-eEEecccccccCCC-CCCCCccEEEEecccC----ChhhHHHHHHHHHHhccCCcEEEEecCcchhhh
Q 015160 268 HPASAGITEGF-SMCGGDFVEVYSDP-SQVGAWDAVVTCFFID----TAHNIVEYIEIISRILKDGGVWINLGPLLYHFA 341 (412)
Q Consensus 268 ~p~~~~~~~~~-s~~~GDF~ely~~~-~~~~~fD~VvT~FFID----ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~ 341 (412)
. .....++ .+..+|+.+....+ ...++||+|++.+.+. ..++...+|+.++++|||||++|-..++...+.
T Consensus 129 ~---~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 205 (265)
T 2i62_A 129 E---EKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY 205 (265)
T ss_dssp H---HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE
T ss_pred H---HHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE
Confidence 0 0000126 78889988753211 1127899999988766 667889999999999999999986443321111
Q ss_pred hccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEE-EEEEEcC
Q 015160 342 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAF-WTMRKKS 403 (412)
Q Consensus 342 ~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f-~VarK~~ 403 (412)
.. +........++.++++++++++||+++........|.... ..|...| ++|||+.
T Consensus 206 ~~-~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~K~~ 262 (265)
T 2i62_A 206 MI-GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTT-----SNNEGLFSLVGRKPG 262 (265)
T ss_dssp EE-TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTT-----BCCCCEEEEEEECCC
T ss_pred Ec-CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccc-----cccceEEEEEecccc
Confidence 11 1111113457999999999999999998775555554322 4455555 4777764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=156.04 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=100.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
++.+|||+|||+|+++..||++ |+.|+|+|+|..||..|+-.+...
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~------------------------------ 119 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 119 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS------------------------------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh------------------------------
Confidence 5679999999999999999986 779999999999998776332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcc-----
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL----- 337 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLl----- 337 (412)
....++.++.+|+.++.. +.||+|++.+.+. ..++...+|++|+++|||||++|..-+..
T Consensus 120 --------~~~~~v~~~~~D~~~~~~-----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~ 186 (261)
T 4gek_A 120 --------KAPTPVDVIEGDIRDIAI-----ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK 186 (261)
T ss_dssp --------CCSSCEEEEESCTTTCCC-----CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHH
T ss_pred --------ccCceEEEeecccccccc-----cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHH
Confidence 012348899999988642 5699999876443 23456789999999999999998532211
Q ss_pred --------hh-hhhccCCCC-C----------cccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 338 --------YH-FADLYGQED-E----------MSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 338 --------yh-~~~~~g~~~-~----------~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|+ |....|..+ + ....+|.++++.+|+++||+.++..
T Consensus 187 ~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 187 VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELW 243 (261)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEE
Confidence 11 111111000 0 0123689999999999999987654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=155.91 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=101.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..|+-..+. .+++-. + .+......-
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~-----~~~~~~-~----------~~~~~~~~~--- 128 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNL-----SYTEEP-L----------AEIAGAKVF--- 128 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC-----CEEEEE-C----------TTSTTCEEE---
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccc-----cccccc-c----------ccccccccc---
Confidence 457999999999999999999999999999999999766521110 000000 0 000000000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
.....++.+.++|+.++.. ...++||+|+....+. ..++...|++.++++|||||+++-+.. .|.... .++
T Consensus 129 ---~~~~~~i~~~~~D~~~l~~--~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~-~~~~~~-~~g 201 (252)
T 2gb4_A 129 ---KSSSGSISLYCCSIFDLPR--ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVL-SYDPTK-HAG 201 (252)
T ss_dssp ---EETTSSEEEEESCTTTGGG--GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE-ECCTTS-CCC
T ss_pred ---ccCCCceEEEECccccCCc--ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEE-ecCCcc-CCC
Confidence 0011348999999998753 1127899999754332 234577899999999999999852111 111111 111
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+ .+.++.+||.+++.. +|+++..+
T Consensus 202 ~---~~~~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 202 P---PFYVPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp S---SCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred C---CCCCCHHHHHHHhhC-CeEEEEEe
Confidence 2 355899999999987 69998854
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=154.35 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=85.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+++.|...++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+
T Consensus 39 ~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~--------------------- 92 (263)
T 3pfg_A 39 DLAALVRRHSP-----KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN--------------------- 92 (263)
T ss_dssp HHHHHHHHHCT-----TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC---------------------
T ss_pred HHHHHHHhhCC-----CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC---------------------
Confidence 46666666655 4569999999999999999999999999999999997665110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c---cCChhhHHHHHHHHHHhccCCc
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDta~Ni~~yl~~I~~~LKPGG 328 (412)
.++.++.+|+.++.. .++||+|++.+ . +....++..+|+.++++|||||
T Consensus 93 -----------------------~~~~~~~~d~~~~~~----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG 145 (263)
T 3pfg_A 93 -----------------------PDAVLHHGDMRDFSL----GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG 145 (263)
T ss_dssp -----------------------TTSEEEECCTTTCCC----SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------------CCCEEEECChHHCCc----cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCc
Confidence 025788999988542 57999999875 3 4444678899999999999999
Q ss_pred EEEE
Q 015160 329 VWIN 332 (412)
Q Consensus 329 ~wIN 332 (412)
++|-
T Consensus 146 ~l~i 149 (263)
T 3pfg_A 146 VVVV 149 (263)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9984
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.73 E-value=8.7e-17 Score=146.90 Aligned_cols=179 Identities=13% Similarity=0.071 Sum_probs=117.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
|..+.+.+.+.+... ..++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+...
T Consensus 20 ~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~---------------- 82 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ---------------- 82 (246)
T ss_dssp HHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhc----------------
Confidence 334444444444321 115679999999999999999999999999999999997766322100
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-cc---CChhhHHHHHHHHHHhccC
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FI---DTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FI---Dta~Ni~~yl~~I~~~LKP 326 (412)
..++.+..+|+.++.. .++||+|++.. .+ ...+++..+|+.++++|||
T Consensus 83 ------------------------~~~~~~~~~d~~~~~~----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~p 134 (246)
T 1y8c_A 83 ------------------------GLKPRLACQDISNLNI----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE 134 (246)
T ss_dssp ------------------------TCCCEEECCCGGGCCC----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEE
T ss_pred ------------------------CCCeEEEecccccCCc----cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCC
Confidence 0026788899887532 27899999876 43 3447889999999999999
Q ss_pred CcEEEEecCcc----------------------hhhhhc-------------cCCC------CCcccCCCHHHHHHHHHh
Q 015160 327 GGVWINLGPLL----------------------YHFADL-------------YGQE------DEMSIELSLEDVKRVALH 365 (412)
Q Consensus 327 GG~wIN~GPLl----------------------yh~~~~-------------~g~~------~~~~ieLS~EEL~~ll~~ 365 (412)
||++|--.|.. |..... .++. ......++.+++++++++
T Consensus 135 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 214 (246)
T 1y8c_A 135 GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKH 214 (246)
T ss_dssp EEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHH
T ss_pred CcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHH
Confidence 99998421110 000000 0000 000124699999999999
Q ss_pred CCCEEEEEeec--cccCCCCcccccccccceEEEEEEEc
Q 015160 366 YGFEFEKEKTI--ETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 366 ~GFeii~e~~i--~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
+||++++.... ...+..+ -...++||||+
T Consensus 215 aGf~~~~~~~~~~~~~~~~~--------~~~~~~varK~ 245 (246)
T 1y8c_A 215 GQLNILDKVDCYSNKKVEKF--------TERITYLVKLG 245 (246)
T ss_dssp TTEEEEEEEESSSSCBCCTT--------CSEEEEEEEEC
T ss_pred CCCeEEEEEcccccCcCCCC--------ceeEEEEEEec
Confidence 99999886532 1222222 23568899996
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=143.21 Aligned_cols=138 Identities=12% Similarity=0.144 Sum_probs=102.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-. .
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------------------------------~----- 83 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT---------------------------------H----- 83 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH---------------------------------C-----
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh---------------------------------C-----
Confidence 46899999999999999999999999999999998765511 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
.++.+..+|+.++.. ..++||+|++...+... .++..+++.++++|||||+++-..+..-.... ....
T Consensus 84 ------~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~ 153 (203)
T 3h2b_A 84 ------PSVTFHHGTITDLSD---SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEP-MYHP 153 (203)
T ss_dssp ------TTSEEECCCGGGGGG---SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE-ECCS
T ss_pred ------CCCeEEeCccccccc---CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhh-hhch
Confidence 125778899888642 35899999987755544 47899999999999999999852211111100 0111
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
......++.++++++++++||+++....
T Consensus 154 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 154 VATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp SSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 1123457999999999999999998663
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=150.33 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=105.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||+|||+|+++..|++.|+.|+|+|+|..|+..++-.+...
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------------- 111 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSS----------------------------------- 111 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTS-----------------------------------
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhcc-----------------------------------
Confidence 359999999999999999999999999999999997766322100
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~--Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
....++.+..+|+.++.. .++||+|++...+...+ +...+++.++++|||||++|-... ......++.
T Consensus 112 ---~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~ 181 (235)
T 3lcc_A 112 ---PKAEYFSFVKEDVFTWRP----TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY---PITDHVGGP 181 (235)
T ss_dssp ---GGGGGEEEECCCTTTCCC----SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC---CCSCCCSCS
T ss_pred ---CCCcceEEEECchhcCCC----CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe---cccccCCCC
Confidence 011347899999988642 46999999887665443 789999999999999999985321 111111112
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
.+.++.+++.+++++.||+++.....
T Consensus 182 ---~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 182 ---PYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp ---SCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred ---CccCCHHHHHHHHHHcCCeEEEEEec
Confidence 35689999999999999999986543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-16 Score=147.47 Aligned_cols=180 Identities=13% Similarity=0.174 Sum_probs=120.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
...|.+.++.. ++.+|||+|||+|+++..|+++|. .|+|+|+|..|+..++-.+.
T Consensus 33 ~~~l~~~~~~~---~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------------- 88 (253)
T 3g5l_A 33 WHELKKMLPDF---NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--------------------- 88 (253)
T ss_dssp HHHHHTTCCCC---TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------------------
T ss_pred HHHHHHhhhcc---CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------------------
Confidence 34455666532 567999999999999999999999 99999999999976652110
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
..++.+..+|+.++.. ..++||+|++...+...+++..+|+.++++|||||++|-.
T Consensus 89 ---------------------~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 89 ---------------------SPVVCYEQKAIEDIAI---EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp ---------------------CTTEEEEECCGGGCCC---CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cCCeEEEEcchhhCCC---CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 1237889999887632 3589999999887666678899999999999999999853
Q ss_pred --cCcc-------hhhhhc-----------cCCC---------CCcccCCCHHHHHHHHHhCCCEEEEEe--eccccCCC
Q 015160 334 --GPLL-------YHFADL-----------YGQE---------DEMSIELSLEDVKRVALHYGFEFEKEK--TIETTYTT 382 (412)
Q Consensus 334 --GPLl-------yh~~~~-----------~g~~---------~~~~ieLS~EEL~~ll~~~GFeii~e~--~i~s~Y~~ 382 (412)
.|.. |.+... .... ....+..|.++++++++++||+++... ........
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~~~~~~~ 224 (253)
T 3g5l_A 145 VEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPELKD 224 (253)
T ss_dssp EECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCCCGGGSS
T ss_pred eCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCCchhhcc
Confidence 2211 111000 0000 001123399999999999999998844 22222222
Q ss_pred CcccccccccceEEE--EEEEcC
Q 015160 383 NPRSMMQNRYFTAFW--TMRKKS 403 (412)
Q Consensus 383 d~~sm~~~~Y~~~f~--VarK~~ 403 (412)
...+....-.+.|+ .|+|..
T Consensus 225 -~~~~~~~~~~P~fl~~~~~~~~ 246 (253)
T 3g5l_A 225 -LPEMQDEYRRPMMLLISATKQE 246 (253)
T ss_dssp -CGGGGGGGTSCCEEEEEEEECC
T ss_pred -ChhHHHhhcCceEEEEEEeccc
Confidence 33344444445554 455543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=144.18 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=120.8
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
..|..+++.+.+.++ ++.+|||+|||+|+++..|+++ ..|+|+|+|..|+..++-.+...
T Consensus 18 ~~~~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~-------------- 77 (243)
T 3d2l_A 18 VPYPEWVAWVLEQVE-----PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMET-------------- 77 (243)
T ss_dssp CCHHHHHHHHHHHSC-----TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHT--------------
T ss_pred ccHHHHHHHHHHHcC-----CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhc--------------
Confidence 346678888888875 3469999999999999999999 89999999999997766322100
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhc
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRIL 324 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F----FIDta~Ni~~yl~~I~~~L 324 (412)
..++.+..+|+.++.. .++||+|++.+ ++....++..+++.++++|
T Consensus 78 --------------------------~~~~~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L 127 (243)
T 3d2l_A 78 --------------------------NRHVDFWVQDMRELEL----PEPVDAITILCDSLNYLQTEADVKQTFDSAARLL 127 (243)
T ss_dssp --------------------------TCCCEEEECCGGGCCC----SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHE
T ss_pred --------------------------CCceEEEEcChhhcCC----CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhc
Confidence 0126788899887532 37899999753 4545577889999999999
Q ss_pred cCCcEEEEecCcch--------------------hhhhccCC---------------CCC---------cccCCCHHHHH
Q 015160 325 KDGGVWINLGPLLY--------------------HFADLYGQ---------------EDE---------MSIELSLEDVK 360 (412)
Q Consensus 325 KPGG~wIN~GPLly--------------------h~~~~~g~---------------~~~---------~~ieLS~EEL~ 360 (412)
||||++|-.-|-.. .+....+. ... ....++.+|++
T Consensus 128 ~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (243)
T 3d2l_A 128 TDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYI 207 (243)
T ss_dssp EEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHH
T ss_pred CCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHH
Confidence 99999984111000 00000000 000 01247999999
Q ss_pred HHHHhCCCEEEEEeec--cccCCCCcccccccccceEEEEEEEc
Q 015160 361 RVALHYGFEFEKEKTI--ETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 361 ~ll~~~GFeii~e~~i--~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
++++++||++++.... ..++..+ -...++||||+
T Consensus 208 ~~l~~aGf~~~~~~~~~~~~~~~~~--------~~~~~~va~K~ 243 (243)
T 3d2l_A 208 TWLREAGFRVCAVTGDFKSDAPTET--------AERIFFVAEKI 243 (243)
T ss_dssp HHHHHTTEEEEEEEETTSSSCCCTT--------CSEEEEEEEEC
T ss_pred HHHHHCCCeEEEEecCcccCCCCCC--------ceEEEEEEEeC
Confidence 9999999999886421 2223222 24568899995
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-17 Score=142.99 Aligned_cols=164 Identities=17% Similarity=0.098 Sum_probs=110.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++..+... .
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~------- 78 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIE--------------------------N------- 78 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhC--------------------------C-------
Confidence 4569999999999999999999999999999999997766322110 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
..++.+..+|+.++. . .++||+|++...+.. .+++..+++.++++|||||+++-+.+..-. ....
T Consensus 79 ------~~~~~~~~~d~~~~~---~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~~ 145 (199)
T 2xvm_A 79 ------LDNLHTRVVDLNNLT---F-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA---DYPC 145 (199)
T ss_dssp ------CTTEEEEECCGGGCC---C-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCS---SSCC
T ss_pred ------CCCcEEEEcchhhCC---C-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccC---CcCC
Confidence 012678889988753 2 578999998764432 347889999999999999997743222110 0011
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEeec--cccCCCCcccccccccceEEEEEEEc
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTI--ETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~~i--~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
.+.....++.+|++++++. |++++.... ...+.... -....+....++|||+
T Consensus 146 ~~~~~~~~~~~~l~~~~~~--f~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~arK~ 199 (199)
T 2xvm_A 146 TVGFPFAFKEGELRRYYEG--WERVKYNEDVGELHRTDAN--GNRIKLRFATMLARKK 199 (199)
T ss_dssp CSCCSCCBCTTHHHHHTTT--SEEEEEECCEEEEEEECTT--SCEEEEEEEEEEEECC
T ss_pred CCCCCCccCHHHHHHHhcC--CeEEEecccceEEEeecCC--CCeeeEEEEEEEEecC
Confidence 1112456899999999976 999885421 11121111 1112334556789885
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=153.92 Aligned_cols=210 Identities=16% Similarity=0.113 Sum_probs=121.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhccccccccc-ccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWN-IYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~-I~P~i~~~sn 251 (412)
.+..|.+.++.. ..++.+|||+|||+|+++..+++ .|..|+|+|+|..|+..++-.++.......+. ..+++.....
T Consensus 57 ~~~~l~~~l~~~-~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 57 KLRCLAQTFATG-EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHHTS-CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 344455544221 12567999999999997666655 37899999999999977663322100000000 0000000000
Q ss_pred ---C-CCcccCccccccCCCCCCCCCCCCceeEEeccccc-ccCC--CCCCCCccEEEEecccCC----hhhHHHHHHHH
Q 015160 252 ---S-LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-VYSD--PSQVGAWDAVVTCFFIDT----AHNIVEYIEII 320 (412)
Q Consensus 252 ---~-~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~e-ly~~--~~~~~~fD~VvT~FFIDt----a~Ni~~yl~~I 320 (412)
. .....+++ .....++.+|+.+ +... ....++||+|++.+.+.. .+++..+|+.+
T Consensus 136 ~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 201 (289)
T 2g72_A 136 KGECWQDKERQLR--------------ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHI 201 (289)
T ss_dssp SCCCHHHHHHHHH--------------HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHH
T ss_pred cccchhhhHHHHH--------------hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHH
Confidence 0 00000000 0014567778776 2210 012467999999876554 56789999999
Q ss_pred HHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeec--cccCCCCcccccccccceEEEE
Q 015160 321 SRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI--ETTYTTNPRSMMQNRYFTAFWT 398 (412)
Q Consensus 321 ~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i--~s~Y~~d~~sm~~~~Y~~~f~V 398 (412)
+++|||||++|-.+.+.-.+... +........++.++++++++++||+++..... ...|... ...|...|||
T Consensus 202 ~r~LkpGG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 275 (289)
T 2g72_A 202 TTLLRPGGHLLLIGALEESWYLA-GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTG-----VDDVKGVFFA 275 (289)
T ss_dssp HTTEEEEEEEEEEEEESCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCT-----TBCCCEEEEE
T ss_pred HHhcCCCCEEEEEEecCcceEEc-CCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeecccccccc-----ccCcceEEEE
Confidence 99999999999654321111110 11110123579999999999999999885532 2445432 2567788998
Q ss_pred EEEcCc
Q 015160 399 MRKKSV 404 (412)
Q Consensus 399 arK~~~ 404 (412)
++|+..
T Consensus 276 ~~~~~~ 281 (289)
T 2g72_A 276 WAQKVG 281 (289)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 888754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=139.62 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=101.7
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~ 271 (412)
+|||+|||+|+++..|+++|+.|+|+|+|..|+..++..+...
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------------- 74 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEK------------------------------------- 74 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHH-------------------------------------
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhc-------------------------------------
Confidence 9999999999999999999999999999999997766332100
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcc
Q 015160 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS 351 (412)
Q Consensus 272 ~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ 351 (412)
..++.+..+|+.++.. ..++||+|++.+......+...+++.+.++|||||++|-..+.........+.+....
T Consensus 75 ---~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 148 (202)
T 2kw5_A 75 ---GVKITTVQSNLADFDI---VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLD 148 (202)
T ss_dssp ---TCCEEEECCBTTTBSC---CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGG
T ss_pred ---CCceEEEEcChhhcCC---CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcce
Confidence 0126788889887632 3578999998765445667889999999999999999854332111110012122224
Q ss_pred cCCCHHHHHHHHHhCCCEEEEEe
Q 015160 352 IELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 352 ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..++.++++++++ ||+++...
T Consensus 149 ~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 149 LLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp GCCCHHHHHHHCS--SSCEEEEE
T ss_pred eecCHHHHHHHhc--CceEEEEE
Confidence 5789999999997 99999854
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=142.18 Aligned_cols=140 Identities=11% Similarity=-0.035 Sum_probs=106.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|+++..|++++ ..|+|+|+|..|+..++..+... .
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~-- 86 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL----------------------------G-- 86 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH----------------------------T--
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc----------------------------C--
Confidence 56799999999999999999997 89999999999998776332110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++.+..+|+.++.. ..++||+|++...+....+...+++.++++|||||+++-..+..... ..
T Consensus 87 ---------~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~- 151 (219)
T 3dh0_A 87 ---------LKNVEVLKSEENKIPL---PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEER--DK- 151 (219)
T ss_dssp ---------CTTEEEEECBTTBCSS---CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCC--SS-
T ss_pred ---------CCcEEEEecccccCCC---CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccc--cc-
Confidence 0137889999887532 35789999998877666778899999999999999998643221111 00
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+.....++.++++++++++||++++..
T Consensus 152 -~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 152 -GPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp -SCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred -CCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 1112345799999999999999998864
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-16 Score=140.05 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=107.5
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.|..+++.+... ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+.
T Consensus 33 ~~~~~l~~~~~~-------~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------- 88 (220)
T 3hnr_A 33 HYEDILEDVVNK-------SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----------------- 88 (220)
T ss_dssp THHHHHHHHHHT-------CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----------------
T ss_pred HHHHHHHHhhcc-------CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----------------
Confidence 345566666542 45699999999999999999999999999999999976552110
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHH--HHHHHHHhccCC
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE--YIEIISRILKDG 327 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~--yl~~I~~~LKPG 327 (412)
.++.+..+|+.++.. . ++||+|++...+....+... +|+.++++||||
T Consensus 89 --------------------------~~~~~~~~d~~~~~~---~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 138 (220)
T 3hnr_A 89 --------------------------KEFSITEGDFLSFEV---P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG 138 (220)
T ss_dssp --------------------------TTCCEESCCSSSCCC---C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred --------------------------CceEEEeCChhhcCC---C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCC
Confidence 126788899888643 2 89999999876665555444 999999999999
Q ss_pred cEEEEecCcchhhhh---------ccCC-----CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 328 GVWINLGPLLYHFAD---------LYGQ-----EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 328 G~wIN~GPLlyh~~~---------~~g~-----~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|+++-..|..-.... ..+- ........+.++++++++++||+++...
T Consensus 139 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 139 GKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp CEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 999864332211000 0000 0001234589999999999999988766
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-17 Score=151.97 Aligned_cols=148 Identities=15% Similarity=0.090 Sum_probs=105.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..+++.|. .|+|+|+|..|+..++..+...
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 110 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------------------------------- 110 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS---------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999998 8999999999997766322100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc----CChhhHHHHHHHHHHhccCCcEEEEecCcc------
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI----DTAHNIVEYIEIISRILKDGGVWINLGPLL------ 337 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI----Dta~Ni~~yl~~I~~~LKPGG~wIN~GPLl------ 337 (412)
....++.+..+|+.++... ..++||+|++.+.+ ....++..+|+.++++|||||++|-..|..
T Consensus 111 -----~~~~~v~~~~~d~~~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 183 (298)
T 1ri5_A 111 -----KRRFKVFFRAQDSYGRHMD--LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER 183 (298)
T ss_dssp -----CCSSEEEEEESCTTTSCCC--CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred -----CCCccEEEEECCccccccC--CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 0012478899998875321 25789999987655 456788999999999999999998533321
Q ss_pred ----------hhhhhc--------cC----------CCCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 338 ----------YHFADL--------YG----------QEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 338 ----------yh~~~~--------~g----------~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
|...-. .| ........++.++++++++++||+++.....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 184 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred HccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 110000 00 0000012468999999999999999986543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=144.55 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=78.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+.. .
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~---~------------------------------- 86 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE---R------------------------------- 86 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---T-------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHh---c-------------------------------
Confidence 567999999999999999999999999999999999776632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|+.++.. .++||+|++.+ ..-..+++..+++.++++|||||++|-
T Consensus 87 ------~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 87 ------NLKIEFLQGDVLEIAF----KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp ------TCCCEEEESCGGGCCC----CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCceEEEECChhhccc----CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 0126789999988642 36899998653 222445788999999999999999983
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=140.31 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=100.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++. . .
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-------~-----------------------~------- 88 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR-------H-----------------------G------- 88 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG-------G-----------------------C-------
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh-------c-----------------------C-------
Confidence 45699999999999999999999999999999999876551 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEEecCcc---h--h-h
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLGPLL---Y--H-F 340 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wIN~GPLl---y--h-~ 340 (412)
..++.+..+|+.++. ..++||+|++...+...++ +..+|+.++++|||||+++-..+.. + . +
T Consensus 89 ------~~~~~~~~~d~~~~~----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 158 (218)
T 3ou2_A 89 ------LDNVEFRQQDLFDWT----PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQD 158 (218)
T ss_dssp ------CTTEEEEECCTTSCC----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------
T ss_pred ------CCCeEEEecccccCC----CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhh
Confidence 013788999998873 2589999998876654444 5899999999999999998532210 0 0 0
Q ss_pred hhc----cC--CCCCcc-----cCCCHHHHHHHHHhCCCEEEEEe
Q 015160 341 ADL----YG--QEDEMS-----IELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 341 ~~~----~g--~~~~~~-----ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
... .. ...... -.++.+++.++++++||+++...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 159 DSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE 203 (218)
T ss_dssp -----CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeee
Confidence 000 00 000011 13699999999999999977655
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=144.15 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=106.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+.+.+...++.. .++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-
T Consensus 28 ~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~------------------------ 81 (240)
T 3dli_A 28 VKARLRRYIPYF--KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG------------------------ 81 (240)
T ss_dssp HHHHHGGGGGGT--TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHT------------------------
T ss_pred HHHHHHHHHhhh--cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHh------------------------
Confidence 555555544422 155799999999999999999999999999999999865440
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEE
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~--Ni~~yl~~I~~~LKPGG~wI 331 (412)
++.+..+|+.++.. +...++||+|++...+.... ++..+|+.++++|||||++|
T Consensus 82 -----------------------~~~~~~~d~~~~~~-~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (240)
T 3dli_A 82 -----------------------KFNVVKSDAIEYLK-SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137 (240)
T ss_dssp -----------------------TSEEECSCHHHHHH-TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEE
T ss_pred -----------------------hcceeeccHHHHhh-hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 02456677766421 12358999999887655443 67999999999999999998
Q ss_pred EecCcchh---hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYH---FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh---~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-..|.... +...+ ..+.....++.++++.+++++||+++...
T Consensus 138 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 138 IESPNPTSLYSLINFY-IDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp EEEECTTSHHHHHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred EEeCCcchhHHHHHHh-cCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 53332111 11111 11212345799999999999999998855
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=142.54 Aligned_cols=150 Identities=13% Similarity=0.202 Sum_probs=106.0
Q ss_pred HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCc
Q 015160 177 ELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSD 255 (412)
Q Consensus 177 ~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~ 255 (412)
.|.+.++.. ++.+|||+|||+|+++..|+++|. .|+|+|+|..|+..++-...
T Consensus 34 ~l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----------------------- 87 (243)
T 3bkw_A 34 ALRAMLPEV---GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP----------------------- 87 (243)
T ss_dssp HHHHHSCCC---TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC-----------------------
T ss_pred HHHHhcccc---CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc-----------------------
Confidence 344455432 567999999999999999999999 99999999999976651110
Q ss_pred ccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec-
Q 015160 256 SDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG- 334 (412)
Q Consensus 256 ~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G- 334 (412)
..++.+..+|+.++.. ..++||+|++...+...++...+|+.++++|||||++|-..
T Consensus 88 -------------------~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 88 -------------------DTGITYERADLDKLHL---PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp -------------------SSSEEEEECCGGGCCC---CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------------------cCCceEEEcChhhccC---CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 0136788899887532 35789999988766666678899999999999999998422
Q ss_pred -Ccc-------hhhhhc------cC-C-C-----------CCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 335 -PLL-------YHFADL------YG-Q-E-----------DEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 335 -PLl-------yh~~~~------~g-~-~-----------~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|.. |.+... .. . . +......+.+++.++++++||++++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~ 212 (243)
T 3bkw_A 146 HPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVE 212 (243)
T ss_dssp CHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEE
T ss_pred CcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeec
Confidence 110 110000 00 0 0 000122589999999999999998854
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=138.67 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=84.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+.+.|.++.+ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+
T Consensus 29 ~~~~~l~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~--------------------- 82 (239)
T 3bxo_A 29 DIADLVRSRTP-----EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL--------------------- 82 (239)
T ss_dssp HHHHHHHHHCT-----TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHhcC-----CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC---------------------
Confidence 35566666553 4579999999999999999999999999999999997655110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCc
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F----FIDta~Ni~~yl~~I~~~LKPGG 328 (412)
.++.+..+|+.++.. .++||+|++.+ ++....++..+|+.++++|||||
T Consensus 83 -----------------------~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 135 (239)
T 3bxo_A 83 -----------------------PDATLHQGDMRDFRL----GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG 135 (239)
T ss_dssp -----------------------TTCEEEECCTTTCCC----SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------------CCCEEEECCHHHccc----CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCe
Confidence 025678889887532 47899999543 35555778999999999999999
Q ss_pred EEEE
Q 015160 329 VWIN 332 (412)
Q Consensus 329 ~wIN 332 (412)
++|-
T Consensus 136 ~l~~ 139 (239)
T 3bxo_A 136 VVVV 139 (239)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=136.47 Aligned_cols=149 Identities=13% Similarity=0.159 Sum_probs=104.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+... .+ ++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~~--~~-- 79 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSP--------------------------GL--NQ-- 79 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCC--------------------------SC--CS--
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhc--------------------------CC--cc--
Confidence 4579999999999999999999999999999999998776332110 00 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---hhHHHHHHHHHHhccCCcEEEEecCcc-hh---hh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIISRILKDGGVWINLGPLL-YH---FA 341 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---~Ni~~yl~~I~~~LKPGG~wIN~GPLl-yh---~~ 341 (412)
....++.+..+|+.++.. ..++||+|++...+... .....+++.++++|||||++|-..+.. +. +.
T Consensus 80 ----~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 152 (235)
T 3sm3_A 80 ----KTGGKAEFKVENASSLSF---HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYR 152 (235)
T ss_dssp ----SSSCEEEEEECCTTSCCS---CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHH
T ss_pred ----ccCcceEEEEecccccCC---CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHH
Confidence 012347899999887642 36899999988655433 334589999999999999998532210 00 00
Q ss_pred --------h--ccC----------CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 342 --------D--LYG----------QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 342 --------~--~~g----------~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
. ..+ ..+.....++.++++++++++||+++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 153 KRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred HHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 0 000 00001235799999999999999999855
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-15 Score=135.90 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=108.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
|..+.+.+.+.++.. .++.+|||+|||+|+++..|+++ |..|+|+|+|..|+..++..+.
T Consensus 28 ~~~~~~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------------- 89 (234)
T 3dtn_A 28 FDDFYGVSVSIASVD--TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR---------------- 89 (234)
T ss_dssp HHHHHHHHHHTCCCS--CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHhhcC--CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhc----------------
Confidence 344556666666532 25689999999999999999999 8899999999999976652110
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccC
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKD 326 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~--Ni~~yl~~I~~~LKP 326 (412)
...++.++.+|+.++.. .++||+|++...+.... ...++++.++++|||
T Consensus 90 -------------------------~~~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 140 (234)
T 3dtn_A 90 -------------------------GNLKVKYIEADYSKYDF----EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKE 140 (234)
T ss_dssp -------------------------SCTTEEEEESCTTTCCC----CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred -------------------------cCCCEEEEeCchhccCC----CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCC
Confidence 00137889999988643 27999999886554333 344699999999999
Q ss_pred CcEEEEecCcc-------------hh-hhhccCC----------CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 327 GGVWINLGPLL-------------YH-FADLYGQ----------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 327 GG~wIN~GPLl-------------yh-~~~~~g~----------~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
||++|-..+.. |. +....+. .......++.++++++++++||+.++..
T Consensus 141 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 212 (234)
T 3dtn_A 141 SGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212 (234)
T ss_dssp EEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeee
Confidence 99998532211 00 0000010 0011234689999999999999998754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-16 Score=139.52 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=110.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
|..+.+.+.+.++.. ++ +|||+|||+|+++..|+++ |..|+|+|+|..|+..++..+...
T Consensus 29 ~~~~~~~~~~~~~~~---~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------------- 89 (219)
T 3dlc_A 29 YPIIAENIINRFGIT---AG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA--------------- 89 (219)
T ss_dssp HHHHHHHHHHHHCCC---EE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred cHHHHHHHHHhcCCC---CC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhc---------------
Confidence 445666666665522 33 9999999999999999998 789999999999998776332110
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
....++.+..+|+.++.. ..++||+|++...+...++...+++.++++|||||+
T Consensus 90 -----------------------~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 143 (219)
T 3dlc_A 90 -----------------------NLNDRIQIVQGDVHNIPI---EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGK 143 (219)
T ss_dssp -----------------------TCTTTEEEEECBTTBCSS---CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred -----------------------cccCceEEEEcCHHHCCC---CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCE
Confidence 011247889999988542 357999999987666567788999999999999999
Q ss_pred EEEecCcchh---------hhhccCCC-C---CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 330 WINLGPLLYH---------FADLYGQE-D---EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 330 wIN~GPLlyh---------~~~~~g~~-~---~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++-..+..-. +....... . ...-.++.++++++++++||++++..
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 144 TYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred EEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 9853322100 00000000 0 00112478999999999999987644
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.4e-16 Score=142.03 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=111.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
.+...++.|.+.++.. ++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.... .
T Consensus 20 ~~~~~~~~l~~~~~~~---~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~---~----------- 82 (256)
T 1nkv_A 20 FTEEKYATLGRVLRMK---PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEE---L----------- 82 (256)
T ss_dssp CCHHHHHHHHHHTCCC---TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHH---T-----------
T ss_pred CCHHHHHHHHHhcCCC---CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHh---c-----------
Confidence 3445666666666422 5679999999999999999987 88999999999999776632210 0
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
....++.+..+|+.++.. .++||+|++...+....+...+|+.++++|||||
T Consensus 83 ------------------------~~~~~v~~~~~d~~~~~~----~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG 134 (256)
T 1nkv_A 83 ------------------------GVSERVHFIHNDAAGYVA----NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG 134 (256)
T ss_dssp ------------------------TCTTTEEEEESCCTTCCC----SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEE
T ss_pred ------------------------CCCcceEEEECChHhCCc----CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCe
Confidence 011247889999987532 5789999987655555567899999999999999
Q ss_pred EEEEecCcchh------hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 329 VWINLGPLLYH------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 329 ~wIN~GPLlyh------~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+++-..|.... +..... .......++.+++.++++++||+++..
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 135 IMLIGEPYWRQLPATEEIAQACG-VSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEEEEEEEETTCCSSHHHHHTTT-CSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EEEEecCcccCCCChHHHHHHHh-cccccccCCHHHHHHHHHHCCCeeEEE
Confidence 99854332110 000000 011123579999999999999998764
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=139.64 Aligned_cols=142 Identities=15% Similarity=0.048 Sum_probs=103.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..|+++|+. |+|+|+|..|+..++-.+..
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------------------------- 138 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---------------------------------- 138 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT----------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc----------------------------------
Confidence 5679999999999999999999864 99999999999766522100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++.+..+|+.++.. ..++||+|++...+... .++..+|+.++++|||||++|-..+..-.......
T Consensus 139 -------~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 208 (254)
T 1xtp_A 139 -------MPVGKFILASMETATL---PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD 208 (254)
T ss_dssp -------SSEEEEEESCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE
T ss_pred -------CCceEEEEccHHHCCC---CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceec
Confidence 0136788999887532 35799999988765544 56889999999999999999854332110000000
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.....+..+.++++++++++||++++...
T Consensus 209 -~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 209 -KEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp -TTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred -ccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 11124567999999999999999988653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=141.48 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=102.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..|+++|. .|+|+|+|..|+..++..+... +
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~------ 126 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------------------------G------ 126 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG--------------------------G------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc--------------------------C------
Confidence 467999999999999999999976 8999999999997766322100 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++.+..+|+.++.. ..++||+|++...+....+ +..+|+.++++|||||++|-..+.... ...+.
T Consensus 127 -------~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~ 195 (241)
T 2ex4_A 127 -------KRVRNYFCCGLQDFTP---EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILD 195 (241)
T ss_dssp -------GGEEEEEECCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-SEEEE
T ss_pred -------CceEEEEEcChhhcCC---CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC-cceec
Confidence 1136788899877543 3568999998875554433 668999999999999999864333221 00000
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.....+..+.++++++++++||++++..
T Consensus 196 -~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 196 -DVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp -TTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred -ccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 0011345699999999999999998865
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-15 Score=129.28 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=106.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~------------------------------------- 88 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF------------------------------------- 88 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-------------------------------------
Confidence 4569999999999999999999999999999999987655111
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
.++.+..+|+.++.. ..++||+|++. .++. ..++...+++.++++|||||++|-..|.
T Consensus 89 -------~~~~~~~~d~~~~~~---~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~--------- 149 (195)
T 3cgg_A 89 -------PEARWVVGDLSVDQI---SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA--------- 149 (195)
T ss_dssp -------TTSEEEECCTTTSCC---CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------
T ss_pred -------CCCcEEEcccccCCC---CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------
Confidence 014677888877532 25789999986 2322 3456789999999999999999842110
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEee--ccccCCCCcccccccccceEEEEEEEc
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKT--IETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~~--i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
.-.++.+++..++++.||++++... ...+|..+ ....++|+||+
T Consensus 150 -----~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~--------~~~~~~v~~k~ 195 (195)
T 3cgg_A 150 -----GRGWVFGDFLEVAERVGLELENAFESWDLKPFVQG--------SEFLVAVFTKK 195 (195)
T ss_dssp -----TSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTT--------CSEEEEEEEEC
T ss_pred -----CCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCC--------CcEEEEEEecC
Confidence 1137899999999999999988642 22233222 24556778875
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=138.72 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=104.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-....
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------------------------- 100 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG---------------------------------- 100 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS----------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc----------------------------------
Confidence 6679999999999999999998 99999999999999766521100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchh------
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYH------ 339 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh------ 339 (412)
..++.+..+|+.++. ...++||+|++...+... .+...+|+.++++|||||+++-..+....
T Consensus 101 -------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 170 (266)
T 3ujc_A 101 -------NNKIIFEANDILTKE---FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD 170 (266)
T ss_dssp -------CTTEEEEECCTTTCC---CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCH
T ss_pred -------CCCeEEEECccccCC---CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchH
Confidence 023788999988763 236899999998766655 78999999999999999999854321111
Q ss_pred -hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 -FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 -~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+.... .+.....++.+++.++++++||+++...
T Consensus 171 ~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 171 EFKEYV--KQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp HHHHHH--HHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHH--hcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 10000 0001224799999999999999998855
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=135.51 Aligned_cols=174 Identities=19% Similarity=0.104 Sum_probs=117.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.|...++.|....| +.+|||+|||+|+++..|+++ +|+|+|..|+..++-.
T Consensus 34 ~~~~~~~~l~~~~~------~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~------------------- 84 (219)
T 1vlm_A 34 AYLSELQAVKCLLP------EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR------------------- 84 (219)
T ss_dssp HHHHHHHHHHHHCC------SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-------------------
T ss_pred hHHHHHHHHHHhCC------CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-------------------
Confidence 45567777777765 458999999999999999987 9999999998655410
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
++.+..+|+.++. ...++||+|++...+...++...+|+.++++|||||+
T Consensus 85 ---------------------------~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 134 (219)
T 1vlm_A 85 ---------------------------GVFVLKGTAENLP---LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGY 134 (219)
T ss_dssp ---------------------------TCEEEECBTTBCC---SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEE
T ss_pred ---------------------------CCEEEEcccccCC---CCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcE
Confidence 1456778877653 2357899999887666666788999999999999999
Q ss_pred EEEecCcchh-----hhhc-cCCC-CCcccCCCHHHHHHHHHhCCCEEEEEe--eccccCCCCccccccccc---ceEEE
Q 015160 330 WINLGPLLYH-----FADL-YGQE-DEMSIELSLEDVKRVALHYGFEFEKEK--TIETTYTTNPRSMMQNRY---FTAFW 397 (412)
Q Consensus 330 wIN~GPLlyh-----~~~~-~g~~-~~~~ieLS~EEL~~ll~~~GFeii~e~--~i~s~Y~~d~~sm~~~~Y---~~~f~ 397 (412)
+|-..|.... +... .+.. ......++.+++.++++++||++++.. ....+|..+........+ ...++
T Consensus 135 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i 214 (219)
T 1vlm_A 135 LIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSELSEIEPVKEGYGEGAFVVI 214 (219)
T ss_dssp EEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECCSCGGGCSSCCCCEESSSSSSEEEE
T ss_pred EEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccCCCCCccccchhhhcCCCCCeEEEE
Confidence 9853322111 1100 0100 011234799999999999999998844 223344333322221222 35566
Q ss_pred EEEEc
Q 015160 398 TMRKK 402 (412)
Q Consensus 398 VarK~ 402 (412)
+|+|+
T Consensus 215 ~a~K~ 219 (219)
T 1vlm_A 215 RGTKK 219 (219)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 88874
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=141.76 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=103.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+.. . +
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~---~-----------------------~------- 83 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEG---N-----------------------G------- 83 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH---T-----------------------T-------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHh---c-----------------------C-------
Confidence 567999999999999999999999999999999999776632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe---cCcc---hhhhh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---GPLL---YHFAD 342 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~---GPLl---yh~~~ 342 (412)
..++.+..+|+.++. ...++||+|++.+.+...++....|++++++|||||+++-. .|-. ..+..
T Consensus 84 ------~~~v~~~~~d~~~l~---~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~ 154 (260)
T 1vl5_A 84 ------HQQVEYVQGDAEQMP---FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 154 (260)
T ss_dssp ------CCSEEEEECCC-CCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHH
T ss_pred ------CCceEEEEecHHhCC---CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHH
Confidence 013778999988753 23589999999876666677889999999999999999853 2211 00000
Q ss_pred ---ccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 343 ---LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 343 ---~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
... .+.....++.+++.++++++||+++..
T Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~ 187 (260)
T 1vl5_A 155 YVEKER-DYSHHRAWKKSDWLKMLEEAGFELEEL 187 (260)
T ss_dssp HHHHHH-CTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred HHHHhc-CccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 000 111123579999999999999998773
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=142.97 Aligned_cols=174 Identities=16% Similarity=0.130 Sum_probs=114.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
..+++.+... ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++..+...
T Consensus 110 ~~~~~~~~~~-------~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~----------------- 165 (286)
T 3m70_A 110 GDVVDAAKII-------SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKE----------------- 165 (286)
T ss_dssp HHHHHHHHHS-------CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHhhcc-------CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 3456655542 4569999999999999999999999999999999998776332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~ 329 (412)
+ .++.+..+|+.++.. .++||+|++...+. ..+++..+++.++++|||||+
T Consensus 166 ---------~--------------~~~~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 218 (286)
T 3m70_A 166 ---------N--------------LNISTALYDINAANI----QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGY 218 (286)
T ss_dssp ---------T--------------CCEEEEECCGGGCCC----CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEE
T ss_pred ---------C--------------CceEEEEeccccccc----cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 0 037889999887532 57899999875443 345688999999999999999
Q ss_pred EEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEEEEEEc
Q 015160 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 330 wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~-~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
++-+.+..- .....+......++.++|++++.. |+++... ........+... ....+...+++|||+
T Consensus 219 l~i~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~l~arK~ 286 (286)
T 3m70_A 219 NLIVAAMST---DDVPCPLPFSFTFAENELKEYYKD--WEFLEYNENMGELHKTDENG-NRIKMKFATMLARKK 286 (286)
T ss_dssp EEEEEEBCC---SSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECCEEEEEEECSSC-CEEEEEEEEEEEECC
T ss_pred EEEEEecCC---CCCCCCCCccccCCHHHHHHHhcC--CEEEEEEccCCeeeeccCCC-CEEEEEEEEEEEecC
Confidence 764222110 011111122467899999999954 9988743 111111111110 112345566788885
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=139.54 Aligned_cols=157 Identities=14% Similarity=0.135 Sum_probs=110.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
+++.|.+.++.. ++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++..+...
T Consensus 49 ~~~~l~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 107 (273)
T 3bus_A 49 LTDEMIALLDVR---SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAA------------------ 107 (273)
T ss_dssp HHHHHHHHSCCC---TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCCC---CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhc------------------
Confidence 445555555422 5679999999999999999985 899999999999997666322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.+..+|+.++. ...++||+|++...+...++...+|+.++++|||||+++-
T Consensus 108 --------------------~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 164 (273)
T 3bus_A 108 --------------------GLANRVTFSYADAMDLP---FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164 (273)
T ss_dssp --------------------TCTTTEEEEECCTTSCC---SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEE
T ss_pred --------------------CCCcceEEEECccccCC---CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEE
Confidence 01124788999998753 2357999999988777777789999999999999999984
Q ss_pred ecCc----chhhh----hccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPL----LYHFA----DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPL----lyh~~----~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..+. ..... ............++.++++++++++||+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 214 (273)
T 3bus_A 165 ADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTV 214 (273)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEE
Confidence 3221 11100 000000001235799999999999999998754
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-15 Score=141.17 Aligned_cols=147 Identities=12% Similarity=0.037 Sum_probs=105.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.+...
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 118 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV--------------------------------- 118 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHS---------------------------------
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999999 999999999999997776332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---------hhHHHHHHHHHHhccCCcEEEEecCcch
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---------HNIVEYIEIISRILKDGGVWINLGPLLY 338 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---------~Ni~~yl~~I~~~LKPGG~wIN~GPLly 338 (412)
....++.+..+|+.++ .++||+|++...+... .++..+++.++++|||||+++-..+...
T Consensus 119 -----~~~~~v~~~~~d~~~~------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 119 -----DSPRRKEVRIQGWEEF------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp -----CCSSCEEEEECCGGGC------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred -----CCCCceEEEECCHHHc------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 1123478899999876 3789999988644333 5678999999999999999985322111
Q ss_pred hhh--hccC-----------------CCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccC
Q 015160 339 HFA--DLYG-----------------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (412)
Q Consensus 339 h~~--~~~g-----------------~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y 380 (412)
... ...+ .-| .....+.+++.+++++.||+++........|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 247 (302)
T 3hem_A 188 DKEEAQELGLTSPMSLLRFIKFILTEIFP-GGRLPRISQVDYYSSNAGWKVERYHRIGANY 247 (302)
T ss_dssp CHHHHHHHTCCCCHHHHHHHHHHHHHTCT-TCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred CccchhhccccccccccchHHHHHHhcCC-CCCCCCHHHHHHHHHhCCcEEEEEEeCchhH
Confidence 000 0000 001 1235689999999999999999866443333
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=136.11 Aligned_cols=149 Identities=14% Similarity=0.215 Sum_probs=101.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..|+++| ..|+|+|+|..|+..++-.+... .+++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~~~~ 80 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL----------------------------RLPR 80 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC----------------------------CCCH
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------cCCc
Confidence 45699999999999999999987 58999999999998776322100 0000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchh--hhh
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYH--FAD 342 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh--~~~ 342 (412)
. ...++.+..+|+.... ...++||+|++...+. ..+++..+++.++++|||||++|.....-|. +..
T Consensus 81 ~------~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 151 (217)
T 3jwh_A 81 N------QWERLQLIQGALTYQD---KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFAN 151 (217)
T ss_dssp H------HHTTEEEEECCTTSCC---GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-
T ss_pred c------cCcceEEEeCCccccc---ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcc
Confidence 0 0114788999975432 2347899999876554 3345689999999999999988853221121 100
Q ss_pred c-cCC--CCCcccCCCHHHHH----HHHHhCCCEEEEEe
Q 015160 343 L-YGQ--EDEMSIELSLEDVK----RVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~-~g~--~~~~~ieLS~EEL~----~ll~~~GFeii~e~ 374 (412)
. .+. .......++.+++. +++++.||+++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~ 190 (217)
T 3jwh_A 152 LPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQP 190 (217)
T ss_dssp ----------CCSCBCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred cccccccccccccccCHHHHHHHHHHHHHHcCceEEEEe
Confidence 0 000 11124568999999 99999999997643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=140.98 Aligned_cols=136 Identities=11% Similarity=-0.011 Sum_probs=100.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++...
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----------------------------------- 77 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----------------------------------- 77 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------------------------------
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 5679999999999999999999 899999999999997655110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh-------
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH------- 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh------- 339 (412)
.++.+..+|+.++. ..++||+|++...+...++....|+.++++|||||+++-..|-.+.
T Consensus 78 ---------~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 144 (259)
T 2p35_A 78 ---------PNTNFGKADLATWK----PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAM 144 (259)
T ss_dssp ---------TTSEEEECCTTTCC----CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHH
T ss_pred ---------CCcEEEECChhhcC----ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHH
Confidence 12577889988753 2578999999876666678889999999999999999853331111
Q ss_pred --------hhhccCC-CCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 340 --------FADLYGQ-EDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 340 --------~~~~~g~-~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+...... .+.....++.+++.++++++||++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 186 (259)
T 2p35_A 145 HETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVDV 186 (259)
T ss_dssp HHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGEEEEEE
T ss_pred HHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcCCceEE
Confidence 0000000 01112347999999999999998654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-15 Score=140.36 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=83.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
+.+..+.+.++. ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+...
T Consensus 70 ~~~~~~~~~~~~----~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 127 (299)
T 3g2m_A 70 SEAREFATRTGP----VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEA------------------ 127 (299)
T ss_dssp HHHHHHHHHHCC----CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTS------------------
T ss_pred HHHHHHHHhhCC----CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhc------------------
Confidence 344444444432 2348999999999999999999999999999999997766322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-cc--CChhhHHHHHHHHHHhccCCcE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FI--DTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FI--Dta~Ni~~yl~~I~~~LKPGG~ 329 (412)
++. ...++.++.+|+.++.. .++||+|++.+ .+ -..+++..+|+.++++|||||+
T Consensus 128 --------~~~----------~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 185 (299)
T 3g2m_A 128 --------PAD----------VRDRCTLVQGDMSAFAL----DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGK 185 (299)
T ss_dssp --------CHH----------HHTTEEEEECBTTBCCC----SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEE
T ss_pred --------ccc----------cccceEEEeCchhcCCc----CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcE
Confidence 000 00247899999988632 57999888653 22 2334678999999999999999
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
+|-
T Consensus 186 l~~ 188 (299)
T 3g2m_A 186 FLL 188 (299)
T ss_dssp EEE
T ss_pred EEE
Confidence 984
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=144.27 Aligned_cols=138 Identities=17% Similarity=0.083 Sum_probs=101.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++-.+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------------------------- 99 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------------------------------------- 99 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-------------------------------------
Confidence 5679999999999999999999999999999999997654110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh---h----h
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH---F----A 341 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh---~----~ 341 (412)
.++.+..+|+.++.. .++||+|++.+.+....+...+|+.++++|||||+++-..|.... + .
T Consensus 100 -------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 168 (279)
T 3ccf_A 100 -------PHLHFDVADARNFRV----DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALY 168 (279)
T ss_dssp -------TTSCEEECCTTTCCC----SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHH
T ss_pred -------CCCEEEECChhhCCc----CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHH
Confidence 025678889887532 478999999876666667889999999999999999853221100 0 0
Q ss_pred ---hccCC----CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 342 ---DLYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 342 ---~~~g~----~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
...+. .+.....++.++++++++++||+++...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 208 (279)
T 3ccf_A 169 NALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAA 208 (279)
T ss_dssp HHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEE
Confidence 00110 0001234699999999999999998743
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=135.01 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=107.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+...+.+.++ .++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-..
T Consensus 21 ~~~~l~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~---------------------- 74 (230)
T 3cc8_A 21 VNPNLLKHIK----KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL---------------------- 74 (230)
T ss_dssp CCHHHHTTCC----TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS----------------------
T ss_pred HHHHHHHHhc----cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----------------------
Confidence 3445555554 25679999999999999999999999999999999986554100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
..+..+|+.++.. +...++||+|++...+....+...+++.++++|||||+++-.
T Consensus 75 ------------------------~~~~~~d~~~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 75 ------------------------DHVVLGDIETMDM-PYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp ------------------------SEEEESCTTTCCC-CSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred ------------------------CcEEEcchhhcCC-CCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 1346677665321 233578999998876666667789999999999999999864
Q ss_pred cCcchhhh-------hcc-----CC-CCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 334 GPLLYHFA-------DLY-----GQ-EDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 334 GPLlyh~~-------~~~-----g~-~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
.|....+. ... +. .+.....++.++++++++++||+++.....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 130 IPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp EECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence 44321110 000 00 011123479999999999999999886543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=141.19 Aligned_cols=174 Identities=17% Similarity=0.092 Sum_probs=114.5
Q ss_pred cchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHH
Q 015160 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 143 ~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ 222 (412)
.+.......+...+..|.... .....+..+.+.|.++++ ++.+|||+|||+|+++..|+++|+.|+|+|+|..
T Consensus 15 ~~~~~~~~~~a~~Yd~~~~~~--~~~~~~~~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~ 87 (260)
T 2avn_A 15 LRSWEFYDRIARAYDSMYETP--KWKLYHRLIGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE 87 (260)
T ss_dssp CCHHHHHHHHHHHHGGGGCSH--HHHHHHHHHHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHH
T ss_pred hhhcchhhHHHHHHHHhcccc--chhHHHHHHHHHHHHhcC-----CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHH
Confidence 445555566666666665321 112234456677777765 4569999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEE
Q 015160 223 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 302 (412)
Q Consensus 223 ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~Vv 302 (412)
|+..++-... . .+..+|+.++. ...++||+|+
T Consensus 88 ~l~~a~~~~~-------------------------------------------~--~~~~~d~~~~~---~~~~~fD~v~ 119 (260)
T 2avn_A 88 MLEVAREKGV-------------------------------------------K--NVVEAKAEDLP---FPSGAFEAVL 119 (260)
T ss_dssp HHHHHHHHTC-------------------------------------------S--CEEECCTTSCC---SCTTCEEEEE
T ss_pred HHHHHHhhcC-------------------------------------------C--CEEECcHHHCC---CCCCCEEEEE
Confidence 9976551100 0 14667777653 2357899999
Q ss_pred Eecc-cCChhhHHHHHHHHHHhccCCcEEEEecCcchh-hhh--------------ccCC-----CCC--cccCCCHHHH
Q 015160 303 TCFF-IDTAHNIVEYIEIISRILKDGGVWINLGPLLYH-FAD--------------LYGQ-----EDE--MSIELSLEDV 359 (412)
Q Consensus 303 T~FF-IDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh-~~~--------------~~g~-----~~~--~~ieLS~EEL 359 (412)
+... +....+....|+.++++|||||++|-..|-.+. ... ..+. .+. ....++.+||
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (260)
T 2avn_A 120 ALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDL 199 (260)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGG
T ss_pred EcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHH
Confidence 8652 222245789999999999999999853332220 000 0010 000 0114788999
Q ss_pred HHHHHhCCCEEEEEe
Q 015160 360 KRVALHYGFEFEKEK 374 (412)
Q Consensus 360 ~~ll~~~GFeii~e~ 374 (412)
+++ +||++++..
T Consensus 200 ~~l---aGf~~~~~~ 211 (260)
T 2avn_A 200 DSL---EGFETVDIR 211 (260)
T ss_dssp SSC---TTEEEEEEE
T ss_pred HHh---cCceEEEEE
Confidence 988 899998855
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.7e-15 Score=138.19 Aligned_cols=155 Identities=12% Similarity=0.068 Sum_probs=107.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA-~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.+.+.++. .++.+|||+|||+|.++..++ +.|..|+|+|+|..|+..++-.+...
T Consensus 52 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~------------------ 110 (287)
T 1kpg_A 52 KIDLALGKLGL---QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS------------------ 110 (287)
T ss_dssp HHHHHHTTTTC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 44444444432 256799999999999999999 66999999999999997766322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~w 330 (412)
....++.+..+|+.++ | ++||+|++...+... ++...+|+.++++|||||++
T Consensus 111 --------------------~~~~~~~~~~~d~~~~---~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 164 (287)
T 1kpg_A 111 --------------------ENLRSKRVLLAGWEQF---D---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM 164 (287)
T ss_dssp --------------------CCCSCEEEEESCGGGC---C---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred --------------------CCCCCeEEEECChhhC---C---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEE
Confidence 0112478899998764 2 789999988655544 67889999999999999999
Q ss_pred EEecCcchh-----------------hhhcc--CCCCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 331 INLGPLLYH-----------------FADLY--GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 331 IN~GPLlyh-----------------~~~~~--g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
+-..+.... +.... ...+ .....+.+++.++++++||+++.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 165 LLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP-GGRLPSIPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp EEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEEEecCCCccccccccccccccccchhhhHHheeCC-CCCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence 853221100 00000 0001 012359999999999999999986543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=135.34 Aligned_cols=109 Identities=13% Similarity=0.115 Sum_probs=79.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+..... ...
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------------------------~~~----- 107 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRK------------------------EPA----- 107 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTT------------------------SHH-----
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhccc------------------------ccc-----
Confidence 456999999999999999999999999999999999776532110000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTA-------HNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta-------~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.+..+|+.++...-...++||+|++. ..+... .+...+|+.++++|||||++|-
T Consensus 108 ------~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 173 (293)
T 3thr_A 108 ------FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173 (293)
T ss_dssp ------HHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ------cceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 013677888888764000125799999986 444333 3488999999999999999983
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=129.23 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=98.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++.. .
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---------------------------------~---- 59 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---------------------------------F---- 59 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---------------------------------C----
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---------------------------------C----
Confidence 556999999999999999999998999999999998655511 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~ 348 (412)
.++.+..+| ..+ ..++||+|++...+...++...+++.++++|||||+++-..+... .. ...+
T Consensus 60 -------~~v~~~~~d-~~~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~---~~-~~~~ 122 (170)
T 3i9f_A 60 -------DSVITLSDP-KEI-----PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE---NT-GIGP 122 (170)
T ss_dssp -------TTSEEESSG-GGS-----CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS---CC-SSSS
T ss_pred -------CCcEEEeCC-CCC-----CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc---cc-ccCc
Confidence 125677888 222 257899999988777777889999999999999999985322111 10 0011
Q ss_pred CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 349 EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.....++.++++++++ ||++++..
T Consensus 123 ~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 123 PLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp CGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred hHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 2234589999999997 99998865
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-15 Score=139.44 Aligned_cols=141 Identities=17% Similarity=0.113 Sum_probs=105.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-.+...
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 128 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA--------------------------------- 128 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999998 999999999999997766322110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhh------
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFA------ 341 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~------ 341 (412)
....++.+..+|+.++. ...++||+|++...+....+...+|+.++++|||||+++-..|...+..
T Consensus 129 -----~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 200 (297)
T 2o57_A 129 -----GLADNITVKYGSFLEIP---CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQ 200 (297)
T ss_dssp -----TCTTTEEEEECCTTSCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGH
T ss_pred -----CCCcceEEEEcCcccCC---CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHH
Confidence 01124788999998763 2357999999987666666788999999999999999986433221100
Q ss_pred ---hccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 342 ---DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 342 ---~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.... ..-..+.+++.++++++||++++..
T Consensus 201 ~~~~~~~----~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 201 PILDRIK----LHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp HHHHHHT----CSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHhc----CCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0000 0123589999999999999998754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-15 Score=135.25 Aligned_cols=156 Identities=10% Similarity=-0.015 Sum_probs=109.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
..+..+.+.++.. .++.+|||+|||+|.++..|++++. .|+|+|+|..|+..++-.+...
T Consensus 32 ~~~~~~l~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------- 92 (257)
T 3f4k_A 32 EATRKAVSFINEL--TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA----------------- 92 (257)
T ss_dssp HHHHHHHTTSCCC--CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 3445555555422 2567999999999999999999976 9999999999997766322100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++.+..+|+.++.. ..++||+|++...+... +..++++.++++|||||+++
T Consensus 93 ---------------------~~~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~ 147 (257)
T 3f4k_A 93 ---------------------NCADRVKGITGSMDNLPF---QNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIA 147 (257)
T ss_dssp ---------------------TCTTTEEEEECCTTSCSS---CTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEE
T ss_pred ---------------------CCCCceEEEECChhhCCC---CCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEE
Confidence 111237889999977642 35899999988765555 67899999999999999998
Q ss_pred EecCcchhhh------hccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYHFA------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh~~------~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-..|...... ..... ...-..+.+++.++++++||+++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 148 VSEASWFTSERPAEIEDFWMD--AYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp EEEEEESSSCCCHHHHHHHHH--HCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeeccCCCChHHHHHHHHH--hCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 6443211100 00000 00114589999999999999998854
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-14 Score=129.45 Aligned_cols=149 Identities=15% Similarity=0.259 Sum_probs=101.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..|+++| ..|+|+|+|..|+..++-.+... .+++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~~~~ 80 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID----------------------------RLPE 80 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG----------------------------GSCH
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh----------------------------cccc
Confidence 45699999999999999999998 69999999999998776322100 0000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEEEecCcchh--hhh
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWINLGPLLYH--FAD 342 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~--Ni~~yl~~I~~~LKPGG~wIN~GPLlyh--~~~ 342 (412)
. ...++.+..+|+..+. ...++||+|++...+.... ++..+++.++++|||||++|.....-|. +..
T Consensus 81 ~------~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 151 (219)
T 3jwg_A 81 M------QRKRISLFQSSLVYRD---KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGN 151 (219)
T ss_dssp H------HHTTEEEEECCSSSCC---GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCC
T ss_pred c------cCcceEEEeCcccccc---cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcc
Confidence 0 0014788999985532 2357899999876554433 4679999999999999988753221110 100
Q ss_pred cc-CC--CCCcccCCCHHHHH----HHHHhCCCEEEEEe
Q 015160 343 LY-GQ--EDEMSIELSLEDVK----RVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~~-g~--~~~~~ieLS~EEL~----~ll~~~GFeii~e~ 374 (412)
.. +. .......++.++++ +++++.||+++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 152 LFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQ 190 (219)
T ss_dssp T-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEe
Confidence 00 00 01124567999999 88999999887654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=136.49 Aligned_cols=156 Identities=11% Similarity=0.009 Sum_probs=109.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
..+..+.+.++.. .++.+|||+|||+|.++..||+++. .|+|+|+|..|+..++..+...
T Consensus 32 ~~~~~~l~~l~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------- 92 (267)
T 3kkz_A 32 EVTLKALSFIDNL--TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS----------------- 92 (267)
T ss_dssp HHHHHHHTTCCCC--CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhcccC--CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc-----------------
Confidence 3445455555421 2678999999999999999999976 8999999999997766332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++.+..+|+.++.. ..++||+|++...+... +...+++.++++|||||+++
T Consensus 93 ---------------------~~~~~v~~~~~d~~~~~~---~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~ 147 (267)
T 3kkz_A 93 ---------------------GLQNRVTGIVGSMDDLPF---RNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLA 147 (267)
T ss_dssp ---------------------TCTTTEEEEECCTTSCCC---CTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEE
T ss_pred ---------------------CCCcCcEEEEcChhhCCC---CCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEE
Confidence 111347899999987642 35899999987655444 67899999999999999998
Q ss_pred EecCcchhhh------hccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYHFA------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh~~------~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-..+...... .... ....-..+.+++.++++++||+++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 148 VSECSWFTDERPAEINDFWM--DAYPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp EEEEEESSSCCCHHHHHHHH--HHCTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeeecCCCChHHHHHHHH--HhCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 6433211000 0000 000123589999999999999998855
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=138.83 Aligned_cols=155 Identities=13% Similarity=-0.020 Sum_probs=108.3
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCC
Q 015160 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 254 (412)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s 254 (412)
+.+.+.++.. .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-.+...
T Consensus 106 ~~l~~~l~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------- 163 (312)
T 3vc1_A 106 EFLMDHLGQA--GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL-------------------- 163 (312)
T ss_dssp HHHHTTSCCC--CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHhccC--CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--------------------
Confidence 4455555421 25679999999999999999999 999999999999997766322110
Q ss_pred cccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015160 255 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (412)
Q Consensus 255 ~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G 334 (412)
....++.+..+|+.++. ...++||+|++...+... +...+|+.++++|||||++|-..
T Consensus 164 ------------------~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 164 ------------------RIDDHVRSRVCNMLDTP---FDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp ------------------TCTTTEEEEECCTTSCC---CCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCceEEEECChhcCC---CCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 11124789999998753 235899999988655544 38899999999999999998543
Q ss_pred CcchhhhhccC------CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 335 PLLYHFADLYG------QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 335 PLlyh~~~~~g------~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+.......... ......-..+.++++++++++||+++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 222 GCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp EEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 32111000000 00000124689999999999999998854
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=136.84 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=111.2
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.|..+++.|....... .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+.
T Consensus 22 ~~~~~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------- 82 (263)
T 2yqz_A 22 VAGQIATAMASAVHPK--GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIA----------------- 82 (263)
T ss_dssp HHHHHHHHHHHHCCCS--SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHHHhhcCC--CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----------------
Confidence 3556777775422211 256799999999999999999999999999999999976652210
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
....++.+..+|+.++. ...++||+|++.+.+...++...+++.++++|||||+
T Consensus 83 -----------------------~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 136 (263)
T 2yqz_A 83 -----------------------GVDRKVQVVQADARAIP---LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGA 136 (263)
T ss_dssp -----------------------TSCTTEEEEESCTTSCC---SCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEE
T ss_pred -----------------------ccCCceEEEEcccccCC---CCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcE
Confidence 00123788999987753 2357899999987776666788999999999999999
Q ss_pred EEEe-cCc---c---hh--hh---hccCCC-CCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 330 WINL-GPL---L---YH--FA---DLYGQE-DEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 330 wIN~-GPL---l---yh--~~---~~~g~~-~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
++-. +.. . +. +. ...|.+ +......+.+++.++++++||+++..
T Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 193 (263)
T 2yqz_A 137 LLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTR 193 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceE
Confidence 9852 110 0 00 10 011211 00122468899999999999997763
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=140.08 Aligned_cols=153 Identities=12% Similarity=0.008 Sum_probs=107.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.+.+.++. .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++..+...
T Consensus 78 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 136 (318)
T 2fk8_A 78 KVDLNLDKLDL---KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI------------------ 136 (318)
T ss_dssp HHHHHHTTSCC---CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS------------------
T ss_pred HHHHHHHhcCC---CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 44445544432 25679999999999999999998 999999999999998776332100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~w 330 (412)
....++.+..+|+.++ .++||+|++...+... ++...+|+.+.++|||||++
T Consensus 137 --------------------~~~~~v~~~~~d~~~~------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 190 (318)
T 2fk8_A 137 --------------------DTNRSRQVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM 190 (318)
T ss_dssp --------------------CCSSCEEEEESCGGGC------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred --------------------CCCCceEEEECChHHC------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEE
Confidence 0112378899998765 1689999988765544 67899999999999999999
Q ss_pred EEecCcchhhh-----------------hcc--CCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 331 INLGPLLYHFA-----------------DLY--GQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 331 IN~GPLlyh~~-----------------~~~--g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+-..|...... +.. ..-+ .....+.+++.++++++||++++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 191 TVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP-GGRLPSTEMMVEHGEKAGFTVPEPL 252 (318)
T ss_dssp EEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHHTTCBCCCCE
T ss_pred EEEEeccCCchhhhhccccccccccchhhHHHHhcCC-CCcCCCHHHHHHHHHhCCCEEEEEE
Confidence 85322211100 000 0001 1223599999999999999998754
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-14 Score=128.72 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=95.4
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccc
Q 015160 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAG 238 (412)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~ 238 (412)
|++....+.......+++.|.+.++ ++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---- 83 (227)
T 1ve3_A 13 YTDINSQEYRSRIETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR---- 83 (227)
T ss_dssp TTCTTSHHHHHHHHHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----
T ss_pred hhcccHHHHHHHHHHHHHHHHHhcC-----CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----
Confidence 4443333333445677788877765 3569999999999999999999999999999999997766322100
Q ss_pred cccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhhHHHH
Q 015160 239 EWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNIVEY 316 (412)
Q Consensus 239 ~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~Ni~~y 316 (412)
..++.+..+|+.++.. ..++||+|++... +....+..++
T Consensus 84 ------------------------------------~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~~~~~~~~~~~~~ 124 (227)
T 1ve3_A 84 ------------------------------------ESNVEFIVGDARKLSF---EDKTFDYVIFIDSIVHFEPLELNQV 124 (227)
T ss_dssp ------------------------------------TCCCEEEECCTTSCCS---CTTCEEEEEEESCGGGCCHHHHHHH
T ss_pred ------------------------------------CCCceEEECchhcCCC---CCCcEEEEEEcCchHhCCHHHHHHH
Confidence 0136788999887532 3578999998765 5566778899
Q ss_pred HHHHHHhccCCcEEEEe
Q 015160 317 IEIISRILKDGGVWINL 333 (412)
Q Consensus 317 l~~I~~~LKPGG~wIN~ 333 (412)
++.++++|||||++|-.
T Consensus 125 l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 125 FKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp HHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEE
Confidence 99999999999999853
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=133.39 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=103.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+... .
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~------- 67 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK--------------------------G------- 67 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 5679999999999999999999999999999999997766322100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc------hhhhh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL------YHFAD 342 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl------yh~~~ 342 (412)
..++.+..+|+.++. ...++||+|++.+.+....++...|+.++++|||||+++-..+.. ..+..
T Consensus 68 ------~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 138 (239)
T 1xxl_A 68 ------VENVRFQQGTAESLP---FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 138 (239)
T ss_dssp ------CCSEEEEECBTTBCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHH
T ss_pred ------CCCeEEEecccccCC---CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHH
Confidence 013678899987753 235899999988766555678899999999999999998532211 00100
Q ss_pred ccC--CCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 343 LYG--QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 343 ~~g--~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
... ..+.....++.+++.++++++||+++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 171 (239)
T 1xxl_A 139 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 171 (239)
T ss_dssp HHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred HHHHhccccccCCCCHHHHHHHHHHCCCcEEEE
Confidence 000 0011123579999999999999998874
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-14 Score=135.99 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=110.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
+++.+.+.+... .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-....
T Consensus 9 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~----------------- 69 (284)
T 3gu3_A 9 YVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL----------------- 69 (284)
T ss_dssp HHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHHhcc--CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh-----------------
Confidence 555666555322 25679999999999999999998 78999999999999766622210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
.+.++.+..+|+.++.. .++||+|++...+...++...+++.++++|||||++
T Consensus 70 -----------------------~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 122 (284)
T 3gu3_A 70 -----------------------LPYDSEFLEGDATEIEL----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKI 122 (284)
T ss_dssp -----------------------SSSEEEEEESCTTTCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEE
T ss_pred -----------------------cCCceEEEEcchhhcCc----CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEE
Confidence 01147899999988542 468999999887777778889999999999999999
Q ss_pred EEecCcc----hhhhhccCC------------------CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 331 INLGPLL----YHFADLYGQ------------------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 331 IN~GPLl----yh~~~~~g~------------------~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+-..|.. ..+..+.+. .....-..+.+++.++++++||+.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~ 188 (284)
T 3gu3_A 123 ICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECR 188 (284)
T ss_dssp EEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEEE
T ss_pred EEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEEE
Confidence 9655431 001000000 0000112356789999999999988763
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=137.22 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=106.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
+..+.+.|.+.++.. ++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++ +.
T Consensus 19 ~~~~~~~l~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-------~~------------- 75 (261)
T 3ege_A 19 DIRIVNAIINLLNLP---KGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAV-------VH------------- 75 (261)
T ss_dssp CHHHHHHHHHHHCCC---TTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSC-------CC-------------
T ss_pred cHHHHHHHHHHhCCC---CCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHH-------hc-------------
Confidence 345667777666532 5679999999999999999999999999999999974221 00
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
.++.+..+|+.++. ...++||+|++.+.+....+...+++.++++|| ||++
T Consensus 76 -------------------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~ 126 (261)
T 3ege_A 76 -------------------------PQVEWFTGYAENLA---LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTI 126 (261)
T ss_dssp -------------------------TTEEEECCCTTSCC---SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCE
T ss_pred -------------------------cCCEEEECchhhCC---CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEE
Confidence 03788999988753 235899999998866666788999999999999 9966
Q ss_pred EE--ecCc----chhhhhccC-CCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 331 IN--LGPL----LYHFADLYG-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 331 IN--~GPL----lyh~~~~~g-~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
+- .+|- .|....... .........+.+++. +++++||+.+....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 127 VLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp EEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred EEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 53 2221 111000000 000012235778899 99999999887653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=128.72 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=105.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh-HHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRL-ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRL-a~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
.|..+++.+...- ++.+|||+|||+|.+ ...++..|+.|+|+|+|..|+..++..+...
T Consensus 10 ~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------- 69 (209)
T 2p8j_A 10 QLYRFLKYCNESN------LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------------- 69 (209)
T ss_dssp HHHHHHHHHHHSS------SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHhccC------CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--------------
Confidence 3556777666432 456999999999998 5677888999999999999997766322100
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccC
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKD 326 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKP 326 (412)
..++.+..+|+.++.. ..++||+|++...+. ...+...+++.++++|||
T Consensus 70 --------------------------~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 120 (209)
T 2p8j_A 70 --------------------------NFKLNISKGDIRKLPF---KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKP 120 (209)
T ss_dssp --------------------------TCCCCEEECCTTSCCS---CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred --------------------------CCceEEEECchhhCCC---CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCC
Confidence 0125678889887532 357899999764322 246788999999999999
Q ss_pred CcEEEEe--cC--cchh---------hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 327 GGVWINL--GP--LLYH---------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 327 GG~wIN~--GP--Llyh---------~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
||+++-. .+ ..|. |.......+.....++.+|+..++...||...++.
T Consensus 121 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 121 GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence 9999842 11 1110 00000001111235799999999999999887754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.8e-14 Score=133.51 Aligned_cols=145 Identities=10% Similarity=0.040 Sum_probs=99.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|+++..||.. |..|+|+|+|..|+..++-.+...
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------------------- 166 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH------------------------------- 166 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-------------------------------
Confidence 5679999999999999999622 669999999999997766322100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEEec----Cc--
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLG----PL-- 336 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wIN~G----PL-- 336 (412)
...+++.++.+|+.++.. . ++||+|++.. ++.......++++.++++|||||++|-.. |.
T Consensus 167 -------~~~~~v~~~~~d~~~~~~---~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 235 (305)
T 3ocj_A 167 -------ALAGQITLHRQDAWKLDT---R-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALS 235 (305)
T ss_dssp -------TTGGGEEEEECCGGGCCC---C-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTC
T ss_pred -------CCCCceEEEECchhcCCc---c-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCccc
Confidence 112347899999988642 2 8999999864 34444555568999999999999998421 11
Q ss_pred -chhhh-hcc--------------CCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 337 -LYHFA-DLY--------------GQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 337 -lyh~~-~~~--------------g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.+.|. +.. .........++.++++++++++||++++...
T Consensus 236 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 236 PDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp TTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence 11110 000 0000011236999999999999999988663
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=122.63 Aligned_cols=124 Identities=17% Similarity=0.005 Sum_probs=94.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+|++| ..|+|+|+|..|+..++..+... +
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~----- 88 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF--------------------------V----- 88 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH--------------------------T-----
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------------------------C-----
Confidence 56799999999999999999998 89999999999997776322110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
..++.+..+|+.+... ..+.||+|+....+. ++.++++.+.++|||||+++-..+.
T Consensus 89 --------~~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~---------- 144 (204)
T 3e05_A 89 --------ARNVTLVEAFAPEGLD---DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVT---------- 144 (204)
T ss_dssp --------CTTEEEEECCTTTTCT---TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECB----------
T ss_pred --------CCcEEEEeCChhhhhh---cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecc----------
Confidence 0237788999876543 136799998765443 6779999999999999999853221
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.-+.+++.+++++.||++...
T Consensus 145 ------~~~~~~~~~~l~~~g~~~~~~ 165 (204)
T 3e05_A 145 ------LDTLTKAVEFLEDHGYMVEVA 165 (204)
T ss_dssp ------HHHHHHHHHHHHHTTCEEEEE
T ss_pred ------cccHHHHHHHHHHCCCceeEE
Confidence 124678889999999955443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=132.21 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=103.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-.+... +
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~----- 85 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN--------------------------G----- 85 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT--------------------------T-----
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-----
Confidence 5679999999999999999999 689999999999997766332110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC----cchhhhh
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP----LLYHFAD 342 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP----Llyh~~~ 342 (412)
..++.+..+|+.++.. ..++||+|++...+....+...+++.++++|||||+++-..| ..++-..
T Consensus 86 --------~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 154 (276)
T 3mgg_A 86 --------IKNVKFLQANIFSLPF---EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEG 154 (276)
T ss_dssp --------CCSEEEEECCGGGCCS---CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCC
T ss_pred --------CCCcEEEEcccccCCC---CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCc
Confidence 0137889999887542 358999999988777777788999999999999999985321 1111000
Q ss_pred c---------cC-CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 343 L---------YG-QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~---------~g-~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
. .. ......-.++.+++.++++++||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~ 196 (276)
T 3mgg_A 155 KKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVE 196 (276)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEe
Confidence 0 00 00000123567899999999999998855
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=137.47 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=84.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+++.|.++.+ .+.+|||+|||+|.++..|+++|.+|+|+|+|..||..|+ +
T Consensus 28 ~l~~~l~~~~~-----~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~-------~---------------- 79 (257)
T 4hg2_A 28 ALFRWLGEVAP-----ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQAL-------R---------------- 79 (257)
T ss_dssp HHHHHHHHHSS-----CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCC-------C----------------
T ss_pred HHHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhh-------h----------------
Confidence 36788888766 3468999999999999999999999999999999984211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.+..+|+.++.. .+++||+|++..-+.-. +...++++++++|||||+++-
T Consensus 80 ----------------------~~~v~~~~~~~e~~~~---~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 80 ----------------------HPRVTYAVAPAEDTGL---PPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp ----------------------CTTEEEEECCTTCCCC---CSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------------cCCceeehhhhhhhcc---cCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEE
Confidence 0137889999887643 46899999987644433 466899999999999999974
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=137.52 Aligned_cols=199 Identities=14% Similarity=0.192 Sum_probs=112.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhccccc------------------------ccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETA------------------------GEWNI 242 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~------------------------~~~~I 242 (412)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+...... ....-
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4679999999999999999998 789999999999998887443211000 00001
Q ss_pred cccccccCCCCCcccCccccccCCCCC---CCCCCCCceeEEecccccccC--CCCCCCCccEEEEeccc---C---Chh
Q 015160 243 YPWIHSNCNSLSDSDQLRPVSIPDIHP---ASAGITEGFSMCGGDFVEVYS--DPSQVGAWDAVVTCFFI---D---TAH 311 (412)
Q Consensus 243 ~P~i~~~sn~~s~~~qlr~v~iPDv~p---~~~~~~~~~s~~~GDF~ely~--~~~~~~~fD~VvT~FFI---D---ta~ 311 (412)
||.... ....++..|.... .....+.++.+..+|+..... .+...++||+|++...+ + ...
T Consensus 126 ~p~~~~--------~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~ 197 (292)
T 3g07_A 126 FPASLT--------ASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDE 197 (292)
T ss_dssp ------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHH
T ss_pred ccchhh--------hccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHH
Confidence 111100 0011112222111 011233579999999985320 01235799999987643 3 444
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCcchh-hhhccCCC-----CCcccCCCHHHHHHHHHh--CCCEEEEEeeccccCCCC
Q 015160 312 NIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVALH--YGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 312 Ni~~yl~~I~~~LKPGG~wIN~GPLlyh-~~~~~g~~-----~~~~ieLS~EEL~~ll~~--~GFeii~e~~i~s~Y~~d 383 (412)
++.++|+.++++|||||++|- .|..|. +....... ....+.+..+++..++.+ +||+.++.-... ..
T Consensus 198 ~~~~~l~~~~~~LkpGG~lil-~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~-~~--- 272 (292)
T 3g07_A 198 GLKRMFRRIYRHLRPGGILVL-EPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATP-HN--- 272 (292)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE-ECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC---------
T ss_pred HHHHHHHHHHHHhCCCcEEEE-ecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEeccC-CC---
Confidence 788999999999999999984 333333 11100000 011456788999999998 999877643211 01
Q ss_pred cccccccccceEEEEEEEcCc
Q 015160 384 PRSMMQNRYFTAFWTMRKKSV 404 (412)
Q Consensus 384 ~~sm~~~~Y~~~f~VarK~~~ 404 (412)
....+....++.+|+..
T Consensus 273 ----~~~g~~r~i~~~~k~~~ 289 (292)
T 3g07_A 273 ----TSKGFQRPVYLFHKARS 289 (292)
T ss_dssp ----------CCCEEEECCC-
T ss_pred ----CCCCccceEEEEEcCCC
Confidence 12345566667777643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=127.29 Aligned_cols=142 Identities=13% Similarity=-0.063 Sum_probs=98.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||++|..|+|+|+|..|+..++-.+.
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~------------------------------------ 99 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT------------------------------------ 99 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC------------------------------------
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc------------------------------------
Confidence 56789999999999999999999999999999999976652110
Q ss_pred CCCCCCCCceeEEecccccccCCC-C-CCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcEEEE--ecCcc----h
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDP-S-QVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWIN--LGPLL----Y 338 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~-~-~~~~fD~VvT~FFIDta~--Ni~~yl~~I~~~LKPGG~wIN--~GPLl----y 338 (412)
..++.+..+|+.++.... . ....||+|++...+.... +...+|+.++++|||||+++- ++.-- -
T Consensus 100 ------~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 173 (245)
T 3ggd_A 100 ------AANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFN 173 (245)
T ss_dssp ------CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHH
T ss_pred ------ccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHH
Confidence 013778899988753210 0 012489999876554443 788999999999999998663 22110 0
Q ss_pred hhhhccCCCC----------CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 339 HFADLYGQED----------EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 339 h~~~~~g~~~----------~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
......+..+ .....++.+|+.+++ .||+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~~ 217 (245)
T 3ggd_A 174 SLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQG 217 (245)
T ss_dssp HHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEEE
T ss_pred HHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEecc
Confidence 0000001111 012347999999999 899999865
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=140.69 Aligned_cols=157 Identities=17% Similarity=0.094 Sum_probs=106.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
..+.+.+.+.++.. ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-. . .
T Consensus 93 ~~~~~~l~~~~~~~---~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-------~-~----------- 150 (416)
T 4e2x_A 93 AMLARDFLATELTG---PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-------G-I----------- 150 (416)
T ss_dssp HHHHHHHHHTTTCS---SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-------T-C-----------
T ss_pred HHHHHHHHHHhCCC---CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-------C-C-----------
Confidence 34555666655422 567999999999999999999999999999999999765511 0 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
+... ..+..++..++. ...++||+|++...+...+++..+|+.++++|||||+++
T Consensus 151 -------------~~~~---------~~~~~~~~~~l~---~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~ 205 (416)
T 4e2x_A 151 -------------RVRT---------DFFEKATADDVR---RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFV 205 (416)
T ss_dssp -------------CEEC---------SCCSHHHHHHHH---HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred -------------Ccce---------eeechhhHhhcc---cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEE
Confidence 0000 011223333332 124789999999877777789999999999999999999
Q ss_pred EecCcchhhhhc--cC-CCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 332 NLGPLLYHFADL--YG-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 332 N~GPLlyh~~~~--~g-~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
-..|..-..... +. ...+....++.++++.+++++||+++....
T Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 206 FEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp EEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 643322111000 00 001113357999999999999999988654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=126.88 Aligned_cols=131 Identities=10% Similarity=0.024 Sum_probs=94.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+..
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----------------------------------- 95 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR----------------------------------- 95 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT-----------------------------------
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc-----------------------------------
Confidence 567999999999999999999999999999999999766522100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++.+..+|+.++.. .++||+|++... +.....+..+|+.++++|||||++|-..|.--.....
T Consensus 96 ------~~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-- 163 (216)
T 3ofk_A 96 ------WSHISWAATDILQFST----AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRW-- 163 (216)
T ss_dssp ------CSSEEEEECCTTTCCC----SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHT--
T ss_pred ------CCCeEEEEcchhhCCC----CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhh--
Confidence 0137889999988642 589999998854 4444556788999999999999998533322111110
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
......+.+..++.. +|..++
T Consensus 164 -----~~~~~~~~~~~~~~~-~~~~~e 184 (216)
T 3ofk_A 164 -----GHVAGAETVITILTE-ALTEVE 184 (216)
T ss_dssp -----TCSCCHHHHHHHHHH-HSEEEE
T ss_pred -----hhhhhHHHHHHHHHh-hccceE
Confidence 113567778787765 455544
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-14 Score=139.59 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=103.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccc-ccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP-VSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~-v~i 264 (412)
++.+|||+|||+|+++..|+++ +..|+|+|+|..|+..++-.+...... . .+ .
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~-------------------~g~~-- 139 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK--F-------------------FGSP-- 139 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHH--H-------------------HSST--
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhh--c-------------------cccc--
Confidence 5679999999999999999986 679999999999998776332110000 0 00 0
Q ss_pred CCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc----
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL---- 337 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl---- 337 (412)
...++.+..+|+.++... +...++||+|++...+...++...+|+.++++|||||+++-..+..
T Consensus 140 ---------~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~ 210 (383)
T 4fsd_A 140 ---------SRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRL 210 (383)
T ss_dssp ---------TCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCC
T ss_pred ---------CCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccccc
Confidence 012478999999876211 2346899999998877766778899999999999999998432110
Q ss_pred -hhhhhc---cCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 338 -YHFADL---YGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 338 -yh~~~~---~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
-..... .+.. ..-.++.+++.++++++||++++
T Consensus 211 ~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~aGF~~v~ 247 (383)
T 4fsd_A 211 SEAAQQDPILYGEC--LGGALYLEDFRRLVAEAGFRDVR 247 (383)
T ss_dssp CHHHHHCHHHHHTT--CTTCCBHHHHHHHHHHTTCCCEE
T ss_pred CHhHhhhHHHhhcc--cccCCCHHHHHHHHHHCCCceEE
Confidence 000000 0000 11247889999999999998765
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=125.54 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=101.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
.+++.|...++ ++.+|||+|||+|+++..|++.|. .|+|+|+|..|+..++..+...
T Consensus 49 ~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------- 106 (205)
T 3grz_A 49 LAMLGIERAMV-----KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN----------------- 106 (205)
T ss_dssp HHHHHHHHHCS-----SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhcc-----CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 36666666553 457999999999999999999988 8999999999997776322110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
. ..++.+..+|+.+.. .++||+|++...+ +.+..+++.++++|||||+++
T Consensus 107 ---------~-------------~~~v~~~~~d~~~~~-----~~~fD~i~~~~~~---~~~~~~l~~~~~~L~~gG~l~ 156 (205)
T 3grz_A 107 ---------G-------------IYDIALQKTSLLADV-----DGKFDLIVANILA---EILLDLIPQLDSHLNEDGQVI 156 (205)
T ss_dssp ---------T-------------CCCCEEEESSTTTTC-----CSCEEEEEEESCH---HHHHHHGGGSGGGEEEEEEEE
T ss_pred ---------C-------------CCceEEEeccccccC-----CCCceEEEECCcH---HHHHHHHHHHHHhcCCCCEEE
Confidence 0 012678899987742 3789999987543 346788999999999999998
Q ss_pred EecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-.++ ..-+.+++.+++++.||+++...
T Consensus 157 ~~~~----------------~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 157 FSGI----------------DYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp EEEE----------------EGGGHHHHHHHHHHTTEEEEEEE
T ss_pred EEec----------------CcccHHHHHHHHHHcCCceEEee
Confidence 5221 11257889999999999998754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=135.09 Aligned_cols=151 Identities=13% Similarity=0.038 Sum_probs=94.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..+++.| ..|+|+|+|..||..|+-..... . .. .+.+.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~---~-~~---------------~~~~~------ 102 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKL---N-SG---------------IKTKY------ 102 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH---C-C-------------------CC------
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhc---c-cc---------------ccccc------
Confidence 46799999999999777776665 78999999999998887332110 0 00 00000
Q ss_pred CCCCCCCCCceeEEeccc------ccccCCCCCCCCccEEEEeccc----CChhhHHHHHHHHHHhccCCcEEEEecCc-
Q 015160 268 HPASAGITEGFSMCGGDF------VEVYSDPSQVGAWDAVVTCFFI----DTAHNIVEYIEIISRILKDGGVWINLGPL- 336 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF------~ely~~~~~~~~fD~VvT~FFI----Dta~Ni~~yl~~I~~~LKPGG~wIN~GPL- 336 (412)
-++.|.++|+ .++.. +...++||+|++.|-+ ++ +++..+|+.++++|||||++|-..|-
T Consensus 103 --------~~~~f~~~d~~~d~~~~~l~~-~~~~~~FD~V~~~~~lhy~~~~-~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 103 --------YKFDYIQETIRSDTFVSSVRE-VFYFGKFNIIDWQFAIHYSFHP-RHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp --------CEEEEEECCTTSSSHHHHHHT-TCCSSCEEEEEEESCGGGTCST-TTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred --------cccchhhhhcccchhhhhhhc-cccCCCeeEEEECchHHHhCCH-HHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 0134555555 22211 1125799999876533 33 35789999999999999999853331
Q ss_pred ---chhhhh-----------------c----------c---C-CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 337 ---LYHFAD-----------------L----------Y---G-QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 337 ---lyh~~~-----------------~----------~---g-~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+.+.. . + + ..+-..+-.+.++|+++++++||+++...
T Consensus 173 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~ 244 (302)
T 2vdw_A 173 DKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNV 244 (302)
T ss_dssp HHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhcCCcccccccccccceeeeccccccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEec
Confidence 111100 0 0 0 01101134678999999999999998865
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-14 Score=130.19 Aligned_cols=151 Identities=17% Similarity=0.088 Sum_probs=97.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+++..+...++. ++.+|||+|||+|.++..|++.|. .|+|+|+|..|+..|+-....
T Consensus 48 ~~~~~l~~~~~~----~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~------------------ 105 (236)
T 1zx0_A 48 PYMHALAAAASS----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR------------------ 105 (236)
T ss_dssp HHHHHHHHHHTT----TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG------------------
T ss_pred HHHHHHHhhcCC----CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHh------------------
Confidence 355555554432 457999999999999999999887 899999999999776621110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE-ecccC----ChhhHHHHHHHHHHhccC
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-CFFID----TAHNIVEYIEIISRILKD 326 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT-~FFID----ta~Ni~~yl~~I~~~LKP 326 (412)
...++.++.+|+.++.. +...++||+|++ .|-+. ...+...+++.++++|||
T Consensus 106 ----------------------~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkp 162 (236)
T 1zx0_A 106 ----------------------QTHKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236)
T ss_dssp ----------------------CSSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred ----------------------cCCCeEEEecCHHHhhc-ccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCC
Confidence 01237889999988621 123589999998 44321 123455779999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEE
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEF 370 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFei 370 (412)
||+++-+....+. ......-........++....+.++||+.
T Consensus 163 gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 163 GGVLTYCNLTSWG--ELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp EEEEEECCHHHHH--HHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred CeEEEEEecCcHH--HhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 9999853221111 10000000011223355667788899984
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=120.09 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=102.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..+++.+..|+|+|+|..|+..++..+...
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~---------------------------------- 78 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH---------------------------------- 78 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 5679999999999999999999999999999999997766322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~ 348 (412)
....++.+..+|+.+... ..+.||+|++...+ +++..+++.+.++|||||+++-..+.
T Consensus 79 ----~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~------------ 136 (192)
T 1l3i_A 79 ----GLGDNVTLMEGDAPEALC---KIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAIL------------ 136 (192)
T ss_dssp ----TCCTTEEEEESCHHHHHT---TSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECB------------
T ss_pred ----CCCcceEEEecCHHHhcc---cCCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecC------------
Confidence 001237788899877322 12589999876544 35789999999999999999853221
Q ss_pred CcccCCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEEEEEEc
Q 015160 349 EMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~GFeii~e~-~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
.-+.+++..++++.||++.... .....+.......+...+....++++|+
T Consensus 137 ----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~k~ 187 (192)
T 1l3i_A 137 ----LETKFEAMECLRDLGFDVNITELNIARGRALDRGTMMVSRNPVALIYTGVS 187 (192)
T ss_dssp ----HHHHHHHHHHHHHTTCCCEEEEEEEEEEEEETTEEEEEECCCEEEEECCC-
T ss_pred ----cchHHHHHHHHHHCCCceEEEEEEcccCeEecCceeecCCCCEEEEEEecc
Confidence 1135788889999999665432 1111111111122333444455567775
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=128.47 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=91.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-. .
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---------------------------------~---- 90 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---------------------------------A---- 90 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---------------------------------C----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---------------------------------C----
Confidence 457999999999999999999999999999999999765511 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCC-CCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQ-VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~-~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
.++.+..+|+.+.. |.. .++||+|++. .+...+++.++++|||||+++..+
T Consensus 91 -------~~~~~~~~d~~~~~--~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~------------- 142 (226)
T 3m33_A 91 -------PHADVYEWNGKGEL--PAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG------------- 142 (226)
T ss_dssp -------TTSEEEECCSCSSC--CTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEE-------------
T ss_pred -------CCceEEEcchhhcc--CCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeC-------------
Confidence 12578889986532 233 5799999987 345678999999999999999211
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-.++.+++..++.+.||+++...
T Consensus 143 ----~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 143 ----PRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp ----SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred ----CcCCHHHHHHHHHHCCCeEEEEE
Confidence 13466789999999999988743
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-13 Score=123.16 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=94.2
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||+ .|..|+|+|+|..|+..++...... +
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~----- 118 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL--------------------------Q----- 118 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------T-----
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------C-----
Confidence 457999999999999999994 5789999999999998776332110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-cCcchhhhhccC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYG 345 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~-GPLlyh~~~~~g 345 (412)
..++.++.+|+.++...+...++||+|++..+ .++..+++.++++|||||+++-. |+.
T Consensus 119 --------~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~--------- 177 (240)
T 1xdz_A 119 --------LENTTFCHDRAETFGQRKDVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAAS--------- 177 (240)
T ss_dssp --------CSSEEEEESCHHHHTTCTTTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC----------
T ss_pred --------CCCEEEEeccHHHhcccccccCCccEEEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCC---------
Confidence 01378899998876421112478999998663 45789999999999999999852 221
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..-..+++.+.+++.||+++....
T Consensus 178 ------~~~~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 178 ------AEEELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ------chHHHHHHHHHHHHcCCeEeEEEE
Confidence 011246778888999999987553
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=125.25 Aligned_cols=148 Identities=10% Similarity=0.036 Sum_probs=93.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHH-HHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMIC-SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~-s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|+++..||++ |..|+|+|+|..||.. ++...+....
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~----------------------------- 77 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK----------------------------- 77 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG-----------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh-----------------------------
Confidence 5679999999999999999999 7899999999999863 3321110000
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-C----ChhhHHHHHHHHHHhccCCcEEEE-ecCcchh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-D----TAHNIVEYIEIISRILKDGGVWIN-LGPLLYH 339 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI-D----ta~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh 339 (412)
....++.+..+|+.++.. ..+. |.|...+-. . ..++...+++.++++|||||+++- ++...|.
T Consensus 78 -------~~~~~v~~~~~d~~~l~~---~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 146 (218)
T 3mq2_A 78 -------GGLPNLLYLWATAERLPP---LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWR 146 (218)
T ss_dssp -------TCCTTEEEEECCSTTCCS---CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBT
T ss_pred -------cCCCceEEEecchhhCCC---CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccc
Confidence 001247899999988643 2445 777643311 0 112236899999999999999984 3332221
Q ss_pred hhh-ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 340 FAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 340 ~~~-~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
... ..+..+........++++.++.++||+++.....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 147 PSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp TBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccccccCCccchHHHHHHHHHHHHHcCCCceeeecc
Confidence 110 1111111111223456888999999999886543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.9e-13 Score=119.68 Aligned_cols=141 Identities=19% Similarity=0.180 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 146 DKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 146 ~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+..........+.|.... ...+++.|... .++.+|||+|||+|.++..|+ ..|+|+|+|...
T Consensus 37 ~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~------~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~~-- 98 (215)
T 2zfu_A 37 LLYHRGFQSQVKKWPLQP-------VDRIARDLRQR------PASLVVADFGCGDCRLASSIR---NPVHCFDLASLD-- 98 (215)
T ss_dssp HHHHHHHHHHHTTSSSCH-------HHHHHHHHHTS------CTTSCEEEETCTTCHHHHHCC---SCEEEEESSCSS--
T ss_pred HHHHHHHHhhhcccchhH-------HHHHHHHHhcc------CCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCCC--
Confidence 333444444445565431 12355555532 145689999999999998884 789999999740
Q ss_pred HHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec
Q 015160 226 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 305 (412)
Q Consensus 226 ~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F 305 (412)
+.+..+|+.++. ...++||+|++.+
T Consensus 99 ----------------------------------------------------~~~~~~d~~~~~---~~~~~fD~v~~~~ 123 (215)
T 2zfu_A 99 ----------------------------------------------------PRVTVCDMAQVP---LEDESVDVAVFCL 123 (215)
T ss_dssp ----------------------------------------------------TTEEESCTTSCS---CCTTCEEEEEEES
T ss_pred ----------------------------------------------------ceEEEeccccCC---CCCCCEeEEEEeh
Confidence 235667776643 2357899999887
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 306 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 306 FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+.. .+...+++.++++|||||++|-..+. .-..+.+++..++++.||+++...
T Consensus 124 ~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~--------------~~~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 124 SLMG-TNIRDFLEEANRVLKPGGLLKVAEVS--------------SRFEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp CCCS-SCHHHHHHHHHHHEEEEEEEEEEECG--------------GGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred hccc-cCHHHHHHHHHHhCCCCeEEEEEEcC--------------CCCCCHHHHHHHHHHCCCEEEEEe
Confidence 7764 67899999999999999999853221 012389999999999999998754
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=122.34 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=87.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
+..+.+.|.++++ ++.+|||+|||+|+++..|+++|+ .|+|+|+|..|+..++-.+..
T Consensus 29 ~~~~~~~l~~~~~-----~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---------------- 87 (215)
T 2pxx_A 29 FSSFRALLEPELR-----PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---------------- 87 (215)
T ss_dssp HHHHHHHHGGGCC-----TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT----------------
T ss_pred HHHHHHHHHHhcC-----CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc----------------
Confidence 4457777777653 557999999999999999999998 899999999999766521100
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC---------------ChhhHH
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---------------TAHNIV 314 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID---------------ta~Ni~ 314 (412)
..++.+..+|+.++. ...++||+|++...++ ...++.
T Consensus 88 -------------------------~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (215)
T 2pxx_A 88 -------------------------VPQLRWETMDVRKLD---FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVD 139 (215)
T ss_dssp -------------------------CTTCEEEECCTTSCC---SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHH
T ss_pred -------------------------CCCcEEEEcchhcCC---CCCCcccEEEECcchhhhccccccccccccchhHHHH
Confidence 013678889988763 2357899999865332 134678
Q ss_pred HHHHHHHHhccCCcEEEEe
Q 015160 315 EYIEIISRILKDGGVWINL 333 (412)
Q Consensus 315 ~yl~~I~~~LKPGG~wIN~ 333 (412)
++++.++++|||||++|-.
T Consensus 140 ~~l~~~~~~LkpgG~li~~ 158 (215)
T 2pxx_A 140 QVLSEVSRVLVPGGRFISM 158 (215)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhCcCCCEEEEE
Confidence 9999999999999999864
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=120.21 Aligned_cols=103 Identities=16% Similarity=0.055 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||++|..|+|+|+|..|+..|+..+... +
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~--------------------------~------- 68 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDL--------------------------G------- 68 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 5679999999999999999999999999999999998776332110 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC--------ChhhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------TAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FID--------ta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
. .++.+..+|+.++... ..++||+|+..+ |+. ...+....|+.++++|||||+++-
T Consensus 69 -----~-~~v~~~~~~~~~l~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 133 (185)
T 3mti_A 69 -----I-ENTELILDGHENLDHY--VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133 (185)
T ss_dssp -----C-CCEEEEESCGGGGGGT--CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----C-CcEEEEeCcHHHHHhh--ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence 0 2367777787765321 257899998763 443 345567889999999999999985
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=129.09 Aligned_cols=191 Identities=15% Similarity=0.200 Sum_probs=113.1
Q ss_pred CcchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHH----HHHc--CCeE-
Q 015160 142 LADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALE----ISHL--GFIS- 214 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~e----LA~~--Gf~V- 214 (412)
..|.+........+.+. +.. ...+...+...+..+...++. ..++.+|||+|||+|.++.. ++.+ +..|
T Consensus 9 ~~d~~~y~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~l~~~~~--~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~ 84 (292)
T 2aot_A 9 FSDHGKYVESFRRFLNH-STE-HQCMQEFMDKKLPGIIGRIGD--TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCIN 84 (292)
T ss_dssp GGCHHHHHHHHHHHHTT-BSH-HHHHHHHHHHTHHHHSSSTTT--TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEE
T ss_pred cccHHHHHHHHHHHHHh-ccH-HHHHHHHHHHhchhHHhhccC--CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceee
Confidence 46777877777777654 222 122332232222222222211 12567999999999976653 3443 3333
Q ss_pred -EEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC---
Q 015160 215 -QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS--- 290 (412)
Q Consensus 215 -~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~--- 290 (412)
+|+|.|..||..++-.+.. .. .+..+ .+.+..++..++..
T Consensus 85 ~~~vD~S~~ml~~a~~~~~~---~~-------------------~~~~v--------------~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 85 NEVVEPSAEQIAKYKELVAK---TS-------------------NLENV--------------KFAWHKETSSEYQSRML 128 (292)
T ss_dssp EEEECSCHHHHHHHHHHHHT---CS-------------------SCTTE--------------EEEEECSCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHh---cc-------------------CCCcc--------------eEEEEecchhhhhhhhc
Confidence 9999999999876622210 00 00000 14455666544320
Q ss_pred CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe--cC---c--chhhh-hccCCCCCcccCCCHHHHHHH
Q 015160 291 DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--GP---L--LYHFA-DLYGQEDEMSIELSLEDVKRV 362 (412)
Q Consensus 291 ~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~--GP---L--lyh~~-~~~g~~~~~~ieLS~EEL~~l 362 (412)
.+...++||+|++.+-+...+|+...|+.++++|||||+++-. .+ . +|... ...+. +.....++.+++.++
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 207 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQ-DDLCQYITSDDLTQM 207 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCC-CTTCCCCCHHHHHHH
T ss_pred cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccC-CCcccCCCHHHHHHH
Confidence 0112578999998887777778899999999999999999852 11 0 11110 10111 111234799999999
Q ss_pred HHhCCCEEEEE
Q 015160 363 ALHYGFEFEKE 373 (412)
Q Consensus 363 l~~~GFeii~e 373 (412)
++++||+++..
T Consensus 208 l~~aGf~~~~~ 218 (292)
T 2aot_A 208 LDNLGLKYECY 218 (292)
T ss_dssp HHHHTCCEEEE
T ss_pred HHHCCCceEEE
Confidence 99999998773
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=119.77 Aligned_cols=124 Identities=11% Similarity=-0.045 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..+|++|..|+|+|+|..|+..|+..+...
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------- 100 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTY---------------------------------- 100 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc----------------------------------
Confidence 5679999999999999999999999999999999998776322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~ 348 (412)
....++.++.+|+.+... ..+.||+|+...-+ +.. +++.++++|||||++|-..+.
T Consensus 101 ----g~~~~v~~~~~d~~~~~~---~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~------------ 156 (204)
T 3njr_A 101 ----GLSPRMRAVQGTAPAALA---DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVT------------ 156 (204)
T ss_dssp ----TCTTTEEEEESCTTGGGT---TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECS------------
T ss_pred ----CCCCCEEEEeCchhhhcc---cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecC------------
Confidence 011247889999988432 13579999865422 455 999999999999999853221
Q ss_pred CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 349 EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-+.+++.+++++.||++....
T Consensus 157 ----~~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 157 ----LESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp ----HHHHHHHHHHHHHHCSEEEEEE
T ss_pred ----cccHHHHHHHHHhCCCcEEEEE
Confidence 1245788888999999988754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-14 Score=130.64 Aligned_cols=153 Identities=16% Similarity=0.026 Sum_probs=98.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
|+.+.+.+..+ +++.+|||+|||+|..+..|++.+ -.|+|+|+|+.|+..|+-... .
T Consensus 48 ~~m~~~a~~~~----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~---~--------------- 105 (236)
T 3orh_A 48 PYMHALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAP---R--------------- 105 (236)
T ss_dssp HHHHHHHHHHT----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGG---G---------------
T ss_pred HHHHHHHHhhc----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHh---h---------------
Confidence 46666665543 257799999999999999999874 689999999999987762211 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE-----ecccCChhhHHHHHHHHHHhccC
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-----CFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT-----~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
...++.++.+|..++.. +...++||+|+. .+-+....+...+++.++|+|||
T Consensus 106 ----------------------~~~~~~~~~~~a~~~~~-~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkP 162 (236)
T 3orh_A 106 ----------------------QTHKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236)
T ss_dssp ----------------------CSSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred ----------------------CCCceEEEeehHHhhcc-cccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCC
Confidence 01235678888766432 234678999862 12244556788999999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
||+|+-+....+. +......+ .......+.+...|.++||+++.
T Consensus 163 GG~l~f~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~L~eaGF~~~~ 206 (236)
T 3orh_A 163 GGVLTYCNLTSWG-ELMKSKYS-DITIMFEETQVPALLEAGFRREN 206 (236)
T ss_dssp EEEEEECCHHHHH-HHTTTTCS-CHHHHHHHHTHHHHHHHTCCGGG
T ss_pred CCEEEEEecCCch-hhhhhhhh-hhhhhhHHHHHHHHHHcCCeEEE
Confidence 9999854322111 10000000 01123455666677788998644
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-13 Score=128.25 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=107.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
..+++.|....+ ++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++-........
T Consensus 22 ~~~~~~l~~~~~-----~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~------------- 83 (313)
T 3bgv_A 22 GEFLEKVRQKKK-----RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNR------------- 83 (313)
T ss_dssp HHHHHHHHHTC-------CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSS-------------
T ss_pred HHHHHHhhhccC-----CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhc-------------
Confidence 345555554432 4569999999999999999976 568999999999997766332110000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC---CCCCCCCccEEEEeccc----CChhhHHHHHHHHHHh
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS---DPSQVGAWDAVVTCFFI----DTAHNIVEYIEIISRI 323 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~---~~~~~~~fD~VvT~FFI----Dta~Ni~~yl~~I~~~ 323 (412)
... ....++.+..+|+.++.. .+...++||+|++.+.+ ...+++..+|+.++++
T Consensus 84 ---~~~----------------~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~ 144 (313)
T 3bgv_A 84 ---RDS----------------EYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACER 144 (313)
T ss_dssp ---SCC-----------------CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTT
T ss_pred ---ccc----------------cccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHH
Confidence 000 011247889999887531 11124589999998755 4446678999999999
Q ss_pred ccCCcEEEEecCcc-------------------hh--hhhc--c---CC---------CCCcccCCCHHHHHHHHHhCCC
Q 015160 324 LKDGGVWINLGPLL-------------------YH--FADL--Y---GQ---------EDEMSIELSLEDVKRVALHYGF 368 (412)
Q Consensus 324 LKPGG~wIN~GPLl-------------------yh--~~~~--~---g~---------~~~~~ieLS~EEL~~ll~~~GF 368 (412)
|||||++|-..|-. |. |.+. . +. .+...+.++.+++.+++++.||
T Consensus 145 LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~ 224 (313)
T 3bgv_A 145 LSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNM 224 (313)
T ss_dssp EEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTE
T ss_pred hCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCc
Confidence 99999998532210 00 1110 0 00 0001234789999999999999
Q ss_pred EEEEEe
Q 015160 369 EFEKEK 374 (412)
Q Consensus 369 eii~e~ 374 (412)
+++...
T Consensus 225 ~~v~~~ 230 (313)
T 3bgv_A 225 KLVYKK 230 (313)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999854
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=114.06 Aligned_cols=125 Identities=11% Similarity=-0.036 Sum_probs=91.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..++++ +..|+|+|+|..|+..++..+...
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 72 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL-------------------------------- 72 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT--------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh--------------------------------
Confidence 5679999999999999999998 789999999999998776332100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
....++ ++.+|+.+... ...++||+|+..+.+.. ..+++.++++|||||+++-..+.
T Consensus 73 ------~~~~~~-~~~~d~~~~~~--~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~---------- 129 (178)
T 3hm2_A 73 ------GVSDRI-AVQQGAPRAFD--DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVT---------- 129 (178)
T ss_dssp ------TCTTSE-EEECCTTGGGG--GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECS----------
T ss_pred ------CCCCCE-EEecchHhhhh--ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeec----------
Confidence 011236 67788766432 12278999998776654 57899999999999999853221
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-+.+++..++++.|+++....
T Consensus 130 ------~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 130 ------VESEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp ------HHHHHHHHHHHHHHCCEEEEEE
T ss_pred ------cccHHHHHHHHHHcCCeeEEEE
Confidence 1234677888889999987743
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.5e-13 Score=126.56 Aligned_cols=155 Identities=11% Similarity=0.087 Sum_probs=105.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHH---HcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEIS---HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA---~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
..+.+.|.++.+. ++.+|||+|||+|+++..|+ ..+..|+|+|+|..|+..++-.+... .
T Consensus 23 ~~~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~----------- 85 (299)
T 3g5t_A 23 SDFYKMIDEYHDG----ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS--P----------- 85 (299)
T ss_dssp HHHHHHHHHHCCS----CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC--C-----------
T ss_pred HHHHHHHHHHhcC----CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc--c-----------
Confidence 4466777776542 56799999999999999999 56789999999999998776332110 0
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCC---CCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP---SQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~---~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LK 325 (412)
....++.+..+|+.++.... ...++||+|++...+... ++..+++.++++||
T Consensus 86 ------------------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lk 140 (299)
T 3g5t_A 86 ------------------------DTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLR 140 (299)
T ss_dssp -------------------------CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEE
T ss_pred ------------------------CCCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcC
Confidence 00124788999988764310 012789999988766555 78999999999999
Q ss_pred CCcEEEEe---cCcchhhhhc--------cCCCCCc-ccC-CCHHHHHHHHHhCCC
Q 015160 326 DGGVWINL---GPLLYHFADL--------YGQEDEM-SIE-LSLEDVKRVALHYGF 368 (412)
Q Consensus 326 PGG~wIN~---GPLlyh~~~~--------~g~~~~~-~ie-LS~EEL~~ll~~~GF 368 (412)
|||+++-. .|....+... ++..... .+. ...+.++.+++.+||
T Consensus 141 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gf 196 (299)
T 3g5t_A 141 KDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHL 196 (299)
T ss_dssp EEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCC
T ss_pred CCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhhhccCC
Confidence 99999741 1221110000 1110111 223 567788999999999
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=112.82 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=92.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..+++.+..|+|+|+|..|+..++..+... .
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~------- 81 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF--------------------------N------- 81 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 5679999999999999999998889999999999997766322100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~ 348 (412)
..++.+..+|+.+... .++||+|++... .++.++++.++++ |||+++-..+.
T Consensus 82 ------~~~~~~~~~d~~~~~~----~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~------------ 133 (183)
T 2yxd_A 82 ------IKNCQIIKGRAEDVLD----KLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIV------------ 133 (183)
T ss_dssp ------CCSEEEEESCHHHHGG----GCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESC------------
T ss_pred ------CCcEEEEECCcccccc----CCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecc------------
Confidence 0137788999887332 368999987765 5678899999998 99999853221
Q ss_pred CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 349 EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-..+++.+++++.||++....
T Consensus 134 ----~~~~~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 134 ----LENAAKIINEFESRGYNVDAVN 155 (183)
T ss_dssp ----HHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----cccHHHHHHHHHHcCCeEEEEE
Confidence 1135678899999999887643
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.2e-13 Score=124.67 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=100.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
.++.|.+.+. ++.+|||+|||+|.++..++++|..|+|+|+|..|+..++..... +
T Consensus 110 ~~~~l~~~~~-----~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~----~--------------- 165 (254)
T 2nxc_A 110 ALKALARHLR-----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR----N--------------- 165 (254)
T ss_dssp HHHHHHHHCC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH----T---------------
T ss_pred HHHHHHHhcC-----CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHH----c---------------
Confidence 4556665543 457999999999999999999999999999999999777632210 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
.+ . +.+..+|+.+... .++||+|+++.. .+.+..+++.+.++|||||++|-.
T Consensus 166 -------~~-------------~-v~~~~~d~~~~~~----~~~fD~Vv~n~~---~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 166 -------GV-------------R-PRFLEGSLEAALP----FGPFDLLVANLY---AELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp -------TC-------------C-CEEEESCHHHHGG----GCCEEEEEEECC---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CC-------------c-EEEEECChhhcCc----CCCCCEEEECCc---HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 00 1 4678888877432 468999998654 334678999999999999999964
Q ss_pred cCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 334 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 334 GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|.+ .-..+++++++++.||++++..
T Consensus 218 ~~~----------------~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 218 GIL----------------KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEE----------------GGGHHHHHHHHHHTTCEEEEEE
T ss_pred eec----------------cCCHHHHHHHHHHCCCEEEEEe
Confidence 432 1247899999999999998754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=118.59 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=93.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+||| +|.++..+|++ +..|+|+|+|..|+..++..+... +
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~----- 103 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERN--------------------------N----- 103 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHT--------------------------T-----
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHh--------------------------C-----
Confidence 56799999999 99999999999 899999999999998776332110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC------------------ChhhHHHHHHHHHHhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID------------------TAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FID------------------ta~Ni~~yl~~I~~~LKPG 327 (412)
.++.+..+|+..+... ..++||+|++.. |.. ....+.++++.+.++||||
T Consensus 104 ---------~~v~~~~~d~~~~~~~--~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 172 (230)
T 3evz_A 104 ---------SNVRLVKSNGGIIKGV--VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG 172 (230)
T ss_dssp ---------CCCEEEECSSCSSTTT--CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred ---------CCcEEEeCCchhhhhc--ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence 0267888996544322 247899999762 221 1122478999999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|+++-.-|-. .-..+++.+++++.||++....
T Consensus 173 G~l~~~~~~~---------------~~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 173 GKVALYLPDK---------------EKLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp EEEEEEEESC---------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEeccc---------------HhHHHHHHHHHHHcCCceEEEE
Confidence 9998532211 1235789999999999887654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=121.16 Aligned_cols=149 Identities=9% Similarity=0.026 Sum_probs=99.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHH------HHHHHHhhhhcccccccccccccccccCCCCCcccCc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYY------MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQL 259 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~------ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ql 259 (412)
++.+|||+|||+|.++..++++ | ..|+|+|+|.. |+..++..+...
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~------------------------- 97 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG------------------------- 97 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-------------------------
Confidence 5679999999999999999998 4 79999999997 887665222100
Q ss_pred cccccCCCCCCCCCCCCceeEEecc-cccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec--C-
Q 015160 260 RPVSIPDIHPASAGITEGFSMCGGD-FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG--P- 335 (412)
Q Consensus 260 r~v~iPDv~p~~~~~~~~~s~~~GD-F~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G--P- 335 (412)
....++.+..+| +.... .|...++||+|++...+....+...+++.+.++|+|||+++-.. +
T Consensus 98 -------------~~~~~v~~~~~d~~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 98 -------------PLGDRLTVHFNTNLSDDL-GPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp -------------TTGGGEEEECSCCTTTCC-GGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred -------------CCCCceEEEECChhhhcc-CCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 011247788887 43321 12235789999988655555555667888888888899998521 1
Q ss_pred ----cch-h---------hhhc-cCCCCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 336 ----LLY-H---------FADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 336 ----Lly-h---------~~~~-~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
..+ + +... ..........++.++++++++++||++++...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 164 PTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred CCchhhhhHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 000 0 0000 011111123579999999999999999986644
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=125.31 Aligned_cols=142 Identities=14% Similarity=0.139 Sum_probs=100.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|||+|.++..|+++ +..++|+|+| .|+..++-.+...
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~-------------------------------- 211 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ-------------------------------- 211 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc--------------------------------
Confidence 5679999999999999999998 7899999999 9997666322100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchh-----
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYH----- 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh----- 339 (412)
...+++.+..+|+.+... .+.||+|+....+... ++..+.++.++++|||||+++-..+..-.
T Consensus 212 ------~~~~~v~~~~~d~~~~~~----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 281 (335)
T 2r3s_A 212 ------GVASRYHTIAGSAFEVDY----GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP 281 (335)
T ss_dssp ------TCGGGEEEEESCTTTSCC----CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS
T ss_pred ------CCCcceEEEecccccCCC----CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc
Confidence 011247899999987522 2349999987655433 56789999999999999987743222110
Q ss_pred -hh---hc--cCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 -FA---DL--YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 -~~---~~--~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+. +. .... ......+.+|++++++++||++++..
T Consensus 282 ~~~~~~~~~~~~~~-~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 282 PDAAAFSLVMLATT-PNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp HHHHHHHHHHHHHS-SSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred hHHHHHHHHHHeeC-CCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 00 00 0000 01346899999999999999998765
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-12 Score=116.01 Aligned_cols=131 Identities=14% Similarity=0.010 Sum_probs=85.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||+++ ..|+|+|+|..|+.... +.+.+.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~---~~a~~~----------------------------- 104 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL---ELVRER----------------------------- 104 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH---HHHHHC-----------------------------
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHH---HHHhcC-----------------------------
Confidence 56799999999999999999874 68999999999873222 111110
Q ss_pred CCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
.++.++.+|+.+... .+. .++||+|++.. .+ ......+++.++++|||||+++-. +.-...
T Consensus 105 ---------~~v~~~~~d~~~~~~~~~~-~~~fD~V~~~~-~~-~~~~~~~l~~~~r~LkpgG~l~i~----~~~~~~-- 166 (210)
T 1nt2_A 105 ---------NNIIPLLFDASKPWKYSGI-VEKVDLIYQDI-AQ-KNQIEILKANAEFFLKEKGEVVIM----VKARSI-- 166 (210)
T ss_dssp ---------SSEEEECSCTTCGGGTTTT-CCCEEEEEECC-CS-TTHHHHHHHHHHHHEEEEEEEEEE----EEHHHH--
T ss_pred ---------CCeEEEEcCCCCchhhccc-ccceeEEEEec-cC-hhHHHHHHHHHHHHhCCCCEEEEE----EecCCc--
Confidence 124556677765311 111 37899998763 22 233445699999999999999853 111110
Q ss_pred CCCCcccCCCHHHHH--H--HHHhCCCEEEEEee
Q 015160 346 QEDEMSIELSLEDVK--R--VALHYGFEFEKEKT 375 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~--~--ll~~~GFeii~e~~ 375 (412)
....+.+++. . .+++. |++++...
T Consensus 167 -----~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 194 (210)
T 1nt2_A 167 -----DSTAEPEEVFKSVLKEMEGD-FKIVKHGS 194 (210)
T ss_dssp -----CTTSCHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred -----cccCCHHHHHHHHHHHHHhh-cEEeeeec
Confidence 1234556653 2 26777 99988664
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=128.55 Aligned_cols=171 Identities=11% Similarity=0.046 Sum_probs=96.6
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCC-HHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFS-YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S-~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|+++..||+ .|..|+|+|+| ..||..|.+...++.+. +
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~-----------------------~---- 76 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG-----------------------G---- 76 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT-----------------------C----
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc-----------------------C----
Confidence 556999999999999999994 47789999999 88876653221111000 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-----hhhHHHHHHHHHHhccCCcEEEEecCcchhh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNIVEYIEIISRILKDGGVWINLGPLLYHF 340 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-----a~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~ 340 (412)
..++.+..+|+.++.. ...+.+|+|...|.... ..+..++|+.++++|||||+++-.-.+--++
T Consensus 77 ---------~~~v~~~~~d~~~l~~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~ 145 (225)
T 3p2e_A 77 ---------LSNVVFVIAAAESLPF--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY 145 (225)
T ss_dssp ---------CSSEEEECCBTTBCCG--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--
T ss_pred ---------CCCeEEEEcCHHHhhh--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 1237889999887621 11244555544442111 1112468999999999999997511111111
Q ss_pred hhc---cCCCCCccc-CCCHHHHHHHHHhCCCEEEEEeeccccCCCC----cccccccccceEEE
Q 015160 341 ADL---YGQEDEMSI-ELSLEDVKRVALHYGFEFEKEKTIETTYTTN----PRSMMQNRYFTAFW 397 (412)
Q Consensus 341 ~~~---~g~~~~~~i-eLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d----~~sm~~~~Y~~~f~ 397 (412)
... .+..+...- .+..+|+.+++.++||+++........|... -.......|...|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~~~~~~~~~~~~~~w~~~~~~~~~~~f~ 210 (225)
T 3p2e_A 146 EEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELDNEYVKQFNSLWAKRLAFGRKRSFF 210 (225)
T ss_dssp ------------CCHHHHHSHHHHHHHHHHTCEEEEEEEECHHHHTTCCSHHHHHHHHSSCCCEE
T ss_pred hhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeeeecCHHHHHHHHHHHhcccCccchhHHH
Confidence 110 011110000 1122459999999999998866444444321 12223345555554
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-12 Score=121.15 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=109.6
Q ss_pred chHHHHHHHHHHHhcCcccC----hhHHhhch-HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEE
Q 015160 144 DVDKVRCIIRNIVRDWAAEG----KTERDQCY-KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQG 216 (412)
Q Consensus 144 d~~kv~s~L~q~~RDWS~eG----~~ER~~~y-~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~G 216 (412)
..+++. .+.++...|...- -.+.+..| ..+++.+.-..+ ....++.+|||+|||+|.++..||.. +..|+|
T Consensus 32 ~~~~~~-~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~-~~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~ 109 (249)
T 3g89_A 32 HLEAFS-RLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRL-PLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVL 109 (249)
T ss_dssp GHHHHH-HHHHHHHHC----------CHHHHHHHHHHHHHGGGGS-SCCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEE
T ss_pred HHHHHH-HHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcc-cccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEE
Confidence 344443 5666677786521 11112222 234444433222 11125679999999999999999987 679999
Q ss_pred EeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCC
Q 015160 217 NEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVG 296 (412)
Q Consensus 217 nD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~ 296 (412)
+|+|..|+..++...... + ..++.++.+|+.++...+...+
T Consensus 110 vD~s~~~~~~a~~~~~~~--------------------------~-------------l~~v~~~~~d~~~~~~~~~~~~ 150 (249)
T 3g89_A 110 VDATRKKVAFVERAIEVL--------------------------G-------------LKGARALWGRAEVLAREAGHRE 150 (249)
T ss_dssp EESCHHHHHHHHHHHHHH--------------------------T-------------CSSEEEEECCHHHHTTSTTTTT
T ss_pred EECCHHHHHHHHHHHHHh--------------------------C-------------CCceEEEECcHHHhhcccccCC
Confidence 999999998777432110 0 0137889999887643111247
Q ss_pred CccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 297 AWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 297 ~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
+||+|++..+ .++..+++.+.++|||||+++- .|+. ..-..+++...+++.||++++...
T Consensus 151 ~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~---------------~~~e~~~~~~~l~~~G~~~~~~~~ 211 (249)
T 3g89_A 151 AYARAVARAV----APLCVLSELLLPFLEVGGAAVAMKGPR---------------VEEELAPLPPALERLGGRLGEVLA 211 (249)
T ss_dssp CEEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSC---------------CHHHHTTHHHHHHHHTEEEEEEEE
T ss_pred CceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCC---------------cHHHHHHHHHHHHHcCCeEEEEEE
Confidence 8999998654 3467899999999999999985 2321 011234567778889999988654
Q ss_pred c
Q 015160 376 I 376 (412)
Q Consensus 376 i 376 (412)
.
T Consensus 212 ~ 212 (249)
T 3g89_A 212 L 212 (249)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-12 Score=116.05 Aligned_cols=135 Identities=16% Similarity=0.079 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..++-... .
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~---~------------------------------ 120 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA---E------------------------------ 120 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT---T------------------------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhh---c------------------------------
Confidence 5679999999999999999998 5 689999999999976552110 0
Q ss_pred CCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++.+..+|+.+... .+.. ++||+|+.. +........+++.+.++|||||+++-. +.......
T Consensus 121 --------~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~----~~~~~~~~ 185 (230)
T 1fbn_A 121 --------RENIIPILGDANKPQEYANIV-EKVDVIYED--VAQPNQAEILIKNAKWFLKKGGYGMIA----IKARSIDV 185 (230)
T ss_dssp --------CTTEEEEECCTTCGGGGTTTS-CCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEE----EEGGGTCS
T ss_pred --------CCCeEEEECCCCCcccccccC-ccEEEEEEe--cCChhHHHHHHHHHHHhCCCCcEEEEE----EecCCCCC
Confidence 0236778888876211 1122 689999822 222223467899999999999999853 11111100
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..+ ...+..+++. ++++.||++++..
T Consensus 186 ~~~--~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 186 TKD--PKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp SSC--HHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred CCC--HHHhhHHHHH-HHHHCCCEEEEEE
Confidence 111 1134558888 8889999988754
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=131.69 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=86.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
.+.+.|.+.... .++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..++-.+...
T Consensus 50 ~~~~~i~~~~~~---~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~----------------- 108 (376)
T 3r0q_C 50 AYFNAVFQNKHH---FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKAN----------------- 108 (376)
T ss_dssp HHHHHHHTTTTT---TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHT-----------------
T ss_pred HHHHHHHhcccc---CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHc-----------------
Confidence 344555444322 2567999999999999999999999 89999999 9997776433210
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCc
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
...+++.++.+|+.++.. .++||+|++. +|+.....+..+++.++++|||||
T Consensus 109 ---------------------~~~~~v~~~~~d~~~~~~----~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG 163 (376)
T 3r0q_C 109 ---------------------NLDHIVEVIEGSVEDISL----PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTG 163 (376)
T ss_dssp ---------------------TCTTTEEEEESCGGGCCC----SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEE
T ss_pred ---------------------CCCCeEEEEECchhhcCc----CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCe
Confidence 011237899999988643 2789999984 467666778889999999999999
Q ss_pred EEE
Q 015160 329 VWI 331 (412)
Q Consensus 329 ~wI 331 (412)
++|
T Consensus 164 ~li 166 (376)
T 3r0q_C 164 VMY 166 (376)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-12 Score=113.69 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=88.6
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||+|||+|.++..|++. +..|+|+|+|..|+..++..+... .
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~------ 113 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL--------------------------K------ 113 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT--------------------------T------
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------C------
Confidence 569999999999999999987 789999999999997776332110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-cCcchhhhhccCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYGQ 346 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~-GPLlyh~~~~~g~ 346 (412)
..++.+..+|+.++.. .++||+|++..+ .++..+++.+.++|||||+++-. |+
T Consensus 114 -------~~~v~~~~~d~~~~~~----~~~~D~i~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~----------- 167 (207)
T 1jsx_A 114 -------LENIEPVQSRVEEFPS----EPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQ----------- 167 (207)
T ss_dssp -------CSSEEEEECCTTTSCC----CSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESS-----------
T ss_pred -------CCCeEEEecchhhCCc----cCCcCEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEeCC-----------
Confidence 0126788999887542 478999986433 45779999999999999999852 21
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
...+++..++. ||++++..
T Consensus 168 -------~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 168 -------MPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp -------CCHHHHHTSCT--TEEEEEEE
T ss_pred -------CchHHHHHHhc--CCceeeee
Confidence 24567777664 99988744
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=113.78 Aligned_cols=116 Identities=13% Similarity=0.051 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++| .|+|+|+|..|+.. .
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~------------------------------- 60 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------H------------------------------- 60 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------C-------------------------------
T ss_pred CCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------c-------------------------------
Confidence 45699999999999999999999 99999999999741 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC--------ChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------TAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FID--------ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
.++.+..+|+.+... .++||+|+++. |.. ...+..+.++.+.+.| |||+++-..+
T Consensus 61 -------~~~~~~~~d~~~~~~----~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~---- 124 (170)
T 3q87_B 61 -------RGGNLVRADLLCSIN----QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI---- 124 (170)
T ss_dssp -------SSSCEEECSTTTTBC----GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE----
T ss_pred -------cCCeEEECChhhhcc----cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe----
Confidence 125678899887432 47999999874 332 1223457889999999 9999975221
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-.-..+++++++++.||+.+...
T Consensus 125 ------------~~~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 125 ------------EANRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp ------------GGGCHHHHHHHHHHTTCEEEEEE
T ss_pred ------------cCCCHHHHHHHHHHCCCcEEEEE
Confidence 01357899999999999987744
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-12 Score=117.72 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=96.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..||+++. .|+|+|+|..|+..|+..+.. +
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~----~----------------------------- 95 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAY----N----------------------------- 95 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH----C-----------------------------
Confidence 356999999999999999999987 899999999999777632211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC------------------ChhhHHHHHHHHHHhccCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------------TAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID------------------ta~Ni~~yl~~I~~~LKPG 327 (412)
...+++.++.+|+.++.. ....++||+|++. ||.. ...++.++++.+.++||||
T Consensus 96 -----~~~~~v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 169 (259)
T 3lpm_A 96 -----QLEDQIEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG 169 (259)
T ss_dssp -----TCTTTEEEECSCGGGGGG-TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEE
T ss_pred -----CCcccEEEEECcHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence 111347889999988642 1225789999986 3322 0134668999999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
|+++-+.| .-..+++..++.+.||.......+
T Consensus 170 G~l~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 170 GKANFVHR-----------------PERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp EEEEEEEC-----------------TTTHHHHHHHHHHTTEEEEEEEEE
T ss_pred cEEEEEEc-----------------HHHHHHHHHHHHHCCCceEEEEEe
Confidence 99985211 124678899999999998876543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-12 Score=114.21 Aligned_cols=136 Identities=18% Similarity=0.101 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..+.-... .
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~---~----------------------------- 120 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE---E----------------------------- 120 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS---S-----------------------------
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHh---c-----------------------------
Confidence 5679999999999999999987 3 689999999999865442110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++.+..+|+.+........++||+|++... .......+++.++++|||||+++-. +.......
T Consensus 121 ---------~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~----~~~~~~~~ 185 (227)
T 1g8a_A 121 ---------RRNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIA----VKSRSIDV 185 (227)
T ss_dssp ---------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE----EEGGGTCT
T ss_pred ---------cCCCEEEEccCCCcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEE----EecCCCCC
Confidence 01367888998773210112358999996543 2222345599999999999999853 21111100
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..+ ...+..+++..+ .+. |++++...
T Consensus 186 ~~~--~~~~~~~~l~~l-~~~-f~~~~~~~ 211 (227)
T 1g8a_A 186 TKE--PEQVFREVEREL-SEY-FEVIERLN 211 (227)
T ss_dssp TSC--HHHHHHHHHHHH-HTT-SEEEEEEE
T ss_pred CCC--hhhhhHHHHHHH-Hhh-ceeeeEec
Confidence 111 124667888888 677 99987654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=123.50 Aligned_cols=123 Identities=16% Similarity=0.033 Sum_probs=91.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++..+... .
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------~--- 159 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF---------------------------Y--- 159 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT---------------------------S---
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhc---------------------------C---
Confidence 5679999999999999999998 789999999999997666322100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
...++.+..+|+.+... .++||+|++ + .++..++++.+.++|||||+++-..|..
T Consensus 160 --------g~~~v~~~~~d~~~~~~----~~~fD~Vi~----~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------- 214 (275)
T 1yb2_A 160 --------DIGNVRTSRSDIADFIS----DQMYDAVIA----D-IPDPWNHVQKIASMMKPGSVATFYLPNF-------- 214 (275)
T ss_dssp --------CCTTEEEECSCTTTCCC----SCCEEEEEE----C-CSCGGGSHHHHHHTEEEEEEEEEEESSH--------
T ss_pred --------CCCcEEEEECchhccCc----CCCccEEEE----c-CcCHHHHHHHHHHHcCCCCEEEEEeCCH--------
Confidence 01237788999887322 478999987 2 2345688999999999999998644321
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-..+++.+.+++.||+.++..
T Consensus 215 --------~~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 215 --------DQSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp --------HHHHHHHHHSGGGTEEEEEEE
T ss_pred --------HHHHHHHHHHHHCCCeEEEEE
Confidence 134677888888999988743
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-12 Score=121.64 Aligned_cols=135 Identities=11% Similarity=0.049 Sum_probs=92.5
Q ss_pred CCeEEEecCCC---ChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 190 PPACLVPGAGL---GRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 190 ~~rVLvPGCGl---GRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
..+|||+|||+ |.++..+++. |..|+|+|+|+.||..|+-.+..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------------------------------- 126 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------------------------------- 126 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------------------------------
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------------------------------
Confidence 46899999999 9987766654 78999999999999877633210
Q ss_pred CCCCCCCCCCCCceeEEecccccccC---CC-----CCCCCccEEEEecc---cCChhhHHHHHHHHHHhccCCcEEEE-
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYS---DP-----SQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWIN- 332 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~---~~-----~~~~~fD~VvT~FF---IDta~Ni~~yl~~I~~~LKPGG~wIN- 332 (412)
..++.++.+|+.+... .+ ...++||+|+..+. +... ++...|++++++|||||+++-
T Consensus 127 ----------~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~ 195 (274)
T 2qe6_A 127 ----------DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMT 195 (274)
T ss_dssp ----------CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred ----------CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 1237889999976310 00 01248999987753 4433 488999999999999999984
Q ss_pred -ecCc---ch----h-hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 333 -LGPL---LY----H-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 333 -~GPL---ly----h-~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+.+- .+ . |.. .+ .+ ....+.+|+.+++ .||++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 196 SLVDTGLPAQQKLARITRE-NL-GE--GWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp EEBCSSCHHHHHHHHHHHH-HH-SC--CCCBCHHHHHHTT--TTCEECT
T ss_pred EecCcchHHHHHHHHHHHh-cC-CC--CccCCHHHHHHHh--CCCeEcc
Confidence 2220 00 0 111 01 11 2347999999999 5999887
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-12 Score=122.22 Aligned_cols=143 Identities=12% Similarity=0.057 Sum_probs=99.7
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..|+++ +..++++|+ ..|+..++..+...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------------------------------- 225 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--------------------------------- 225 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc---------------------------------
Confidence 679999999999999999998 678999999 77887666322100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcc--------
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL-------- 337 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLl-------- 337 (412)
...+++.+..+||.+... ...+.||+|+....+. ..++....|+.++++|||||++|-..+.+
T Consensus 226 -----~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~ 298 (352)
T 3mcz_A 226 -----DLGGRVEFFEKNLLDARN--FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPA 298 (352)
T ss_dssp -----TCGGGEEEEECCTTCGGG--GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSH
T ss_pred -----CCCCceEEEeCCcccCcc--cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCc
Confidence 112348899999987531 0135699999877654 33457899999999999999998532211
Q ss_pred -hhhhhc-cCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 338 -YHFADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 338 -yh~~~~-~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
-.+.+. .........+.+.+|++++++++||++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 299 LSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp HHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred hHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 000000 000000134689999999999999999874
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.8e-12 Score=122.36 Aligned_cols=155 Identities=12% Similarity=0.053 Sum_probs=103.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
..+.+.+.++. .+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++-.+...
T Consensus 178 ~~~~l~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----------------- 236 (359)
T 1x19_A 178 AIQLLLEEAKL---DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK----------------- 236 (359)
T ss_dssp HHHHHHHHCCC---TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT-----------------
T ss_pred hHHHHHHhcCC---CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc-----------------
Confidence 34455555542 25679999999999999999998 679999999 99997666322100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh--hHHHHHHHHHHhccCCcE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGV 329 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~--Ni~~yl~~I~~~LKPGG~ 329 (412)
...+++.+..+|+.+... ..+|+|+..+.+.... +..+.|+.++++|||||+
T Consensus 237 ---------------------~~~~~v~~~~~d~~~~~~-----~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~ 290 (359)
T 1x19_A 237 ---------------------GVADRMRGIAVDIYKESY-----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGR 290 (359)
T ss_dssp ---------------------TCTTTEEEEECCTTTSCC-----CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCE
T ss_pred ---------------------CCCCCEEEEeCccccCCC-----CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCE
Confidence 011247899999987522 2249999887664333 378999999999999999
Q ss_pred EEEecCcc-------hh-hhhc---cCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 330 WINLGPLL-------YH-FADL---YGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 330 wIN~GPLl-------yh-~~~~---~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
+|-..+.. +. +... .+.........+.+|++++++++||++++...
T Consensus 291 l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 347 (359)
T 1x19_A 291 LLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVR 347 (359)
T ss_dssp EEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEE
T ss_pred EEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEe
Confidence 96432111 00 0000 01000001128999999999999999987653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=128.20 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=79.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++|. .|+|+|+|. |+..|+-.+.. +
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~----~----------------------------- 109 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRL----N----------------------------- 109 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHH----c-----------------------------
Confidence 456999999999999999999997 899999996 98766633211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....++.++.+|+.++.. ..++||+|++.. ++....++..+++.+.++|||||++|
T Consensus 110 -----~~~~~i~~~~~d~~~~~~---~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 110 -----KLEDTITLIKGKIEEVHL---PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCcEEEEEeeHHHhcC---CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 011247889999988643 247899999754 67767778899999999999999998
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=119.77 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=100.2
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
.|+..+..+...+... ++.+|||+|||+|.++..|++. +..|+|+|+|..|+..|+..+...
T Consensus 77 ~~~~~~~~i~~~~~~~---~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------ 141 (255)
T 3mb5_A 77 VHPKDAALIVAYAGIS---PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA------------ 141 (255)
T ss_dssp CCHHHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH------------
T ss_pred ccHhHHHHHHHhhCCC---CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc------------
Confidence 3455555666555422 5679999999999999999999 789999999999998776332110
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
...+++.+..+|+.+... .++||+|+.. .++..++++.+.++|||
T Consensus 142 --------------------------~~~~~v~~~~~d~~~~~~----~~~~D~v~~~-----~~~~~~~l~~~~~~L~~ 186 (255)
T 3mb5_A 142 --------------------------GFDDRVTIKLKDIYEGIE----EENVDHVILD-----LPQPERVVEHAAKALKP 186 (255)
T ss_dssp --------------------------TCTTTEEEECSCGGGCCC----CCSEEEEEEC-----SSCGGGGHHHHHHHEEE
T ss_pred --------------------------CCCCceEEEECchhhccC----CCCcCEEEEC-----CCCHHHHHHHHHHHcCC
Confidence 011237889999987532 4789999862 23456789999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCC--CEEEEE
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG--FEFEKE 373 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~G--Feii~e 373 (412)
||+++-+.|.. -..+++...+++.| |..++.
T Consensus 187 gG~l~~~~~~~----------------~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 187 GGFFVAYTPCS----------------NQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EEEEEEEESSH----------------HHHHHHHHHHHHTGGGBSCCEE
T ss_pred CCEEEEEECCH----------------HHHHHHHHHHHHcCCCccccEE
Confidence 99998654321 13567788899999 977663
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-12 Score=110.77 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=84.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
..+.|.+.++.. ++.+|||+|||+|+++..++++|..|+|+|+|..|+..++..+...
T Consensus 40 ~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------------- 97 (194)
T 1dus_A 40 GTKILVENVVVD---KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN------------------- 97 (194)
T ss_dssp HHHHHHHHCCCC---TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHcccC---CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 444444444322 5679999999999999999999999999999999997766332110
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
. ++ ..++.+..+|+.+... .++||+|++..-+.. ..++..+++.++++|||||+++-
T Consensus 98 -------~--~~---------~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 155 (194)
T 1dus_A 98 -------N--LD---------NYDIRVVHSDLYENVK----DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp -------T--CT---------TSCEEEEECSTTTTCT----TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------C--CC---------ccceEEEECchhcccc----cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEE
Confidence 0 00 0026788899887432 478999998654333 56678999999999999999985
Q ss_pred e
Q 015160 333 L 333 (412)
Q Consensus 333 ~ 333 (412)
.
T Consensus 156 ~ 156 (194)
T 1dus_A 156 V 156 (194)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=114.16 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=79.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++.+++++|. .|+|+|+|..|+..++..+...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 90 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL--------------------------------- 90 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 456999999999999999999987 6999999999998776322110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChhhHHHHHHHHHH--hccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISR--ILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~Ni~~yl~~I~~--~LKPGG~wIN 332 (412)
.. .++.++.+|+.++... ...++||+|++.. |....+++.+.++.+.+ +|||||+++-
T Consensus 91 -----~~-~~v~~~~~d~~~~~~~-~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~ 151 (189)
T 3p9n_A 91 -----GL-SGATLRRGAVAAVVAA-GTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVV 151 (189)
T ss_dssp -----TC-SCEEEEESCHHHHHHH-CCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEE
T ss_pred -----CC-CceEEEEccHHHHHhh-ccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEE
Confidence 00 2378899999886320 1247899999864 33334678899999999 9999999984
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.7e-12 Score=125.50 Aligned_cols=145 Identities=14% Similarity=0.166 Sum_probs=100.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|.++..|+++ +..++|+|+ +.|+..++-.+..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------- 224 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG--------------------------------- 224 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT---------------------------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh---------------------------------
Confidence 4569999999999999999995 678999999 9998766522110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchh-----
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYH----- 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh----- 339 (412)
.....++.+..+||.+... |. .+.||+|+....+. ..++....|++++++|||||.+|-..++.-.
T Consensus 225 -----~~~~~~v~~~~~d~~~~~~-~~-p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 297 (363)
T 3dp7_A 225 -----LSGSERIHGHGANLLDRDV-PF-PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYET 297 (363)
T ss_dssp -----CTTGGGEEEEECCCCSSSC-CC-CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHH
T ss_pred -----cCcccceEEEEccccccCC-CC-CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccc
Confidence 0112358999999987420 11 26899999887765 4456778999999999999999753222100
Q ss_pred --h----hhc-c-CCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 --F----ADL-Y-GQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 --~----~~~-~-g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+ ... . ........+.+.+|++++++++||++++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~ 340 (363)
T 3dp7_A 298 ASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQ 340 (363)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCC
T ss_pred hhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 0 000 0 000111346799999999999999997644
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=113.90 Aligned_cols=136 Identities=10% Similarity=-0.024 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..+. +.+..
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~---~~a~~----------------------------- 124 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI---NLAKK----------------------------- 124 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH---HHHHH-----------------------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH---HHhhc-----------------------------
Confidence 5679999999999999999988 378999999998864332 11110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++.+..+|+.+....+...++||+|++... .......++..++++|||||+++-. ...-....+
T Consensus 125 ---------~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~---~~~~~~~~~ 190 (233)
T 2ipx_A 125 ---------RTNIIPVIEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVIS---IKANCIDST 190 (233)
T ss_dssp ---------CTTEEEECSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEE---EEHHHHCSS
T ss_pred ---------cCCeEEEEcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEE---EcccccccC
Confidence 01367888898873211123478999997543 2223456788999999999999851 111000101
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+ ...+-.++ .+++++.||++++..
T Consensus 191 -~~--~~~~~~~~-~~~l~~~Gf~~~~~~ 215 (233)
T 2ipx_A 191 -AS--AEAVFASE-VKKMQQENMKPQEQL 215 (233)
T ss_dssp -SC--HHHHHHHH-HHTTGGGTEEEEEEE
T ss_pred -CC--HHHHHHHH-HHHHHHCCCceEEEE
Confidence 11 01111233 478889999998754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=125.91 Aligned_cols=110 Identities=16% Similarity=0.009 Sum_probs=76.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.+.+.++. .++.+|||+|||+|+++..||++|+.|+|+|+|..||..++-.+. ..
T Consensus 33 ~~~~il~~l~l---~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~---~~---------------- 90 (261)
T 3iv6_A 33 DRENDIFLENI---VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALA---DR---------------- 90 (261)
T ss_dssp HHHHHHHTTTC---CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTS---SS----------------
T ss_pred HHHHHHHhcCC---CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH---hc----------------
Confidence 34444444432 256799999999999999999999999999999999977662210 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccC--CCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcE
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS--DPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~--~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~ 329 (412)
.+.+++.++.. .....++||+|++++.+. ..++...+++.++++| |||+
T Consensus 91 --------------------------~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~ 143 (261)
T 3iv6_A 91 --------------------------CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGT 143 (261)
T ss_dssp --------------------------CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSE
T ss_pred --------------------------cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcE
Confidence 01122222111 001246899999887554 3456888999999999 9999
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
++-
T Consensus 144 l~l 146 (261)
T 3iv6_A 144 VRA 146 (261)
T ss_dssp EEE
T ss_pred EEE
Confidence 973
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=128.66 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=80.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..|+......
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~--------------------------------- 111 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKAN--------------------------------- 111 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHc---------------------------------
Confidence 456999999999999999999998 89999999 5987766433210
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++.++.+|+.++.. ..++||+|++.. ++.....+..+++.+.++|||||++|
T Consensus 112 -----~~~~~v~~~~~d~~~~~~---~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 112 -----KLDHVVTIIKGKVEEVEL---PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp -----TCTTTEEEEESCTTTCCC---SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCcEEEEECcHHHccC---CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 011237899999988732 358999999853 46666778899999999999999997
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=115.10 Aligned_cols=136 Identities=17% Similarity=0.095 Sum_probs=96.4
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
.+.|.+..+ ++.+|||+|||+|+++..| |+ .|+|+|+|..|+..++-..
T Consensus 27 ~~~l~~~~~-----~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---------------------- 76 (211)
T 2gs9_A 27 ERALKGLLP-----PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---------------------- 76 (211)
T ss_dssp HHHHHTTCC-----CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC----------------------
T ss_pred HHHHHHhcC-----CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC----------------------
Confidence 344555543 4569999999999999888 88 9999999999987655110
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
.++.+..+|+.++. ...++||+|++...+...++..+.++.++++|||||++|-.
T Consensus 77 ----------------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~ 131 (211)
T 2gs9_A 77 ----------------------PEATWVRAWGEALP---FPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVG 131 (211)
T ss_dssp ----------------------TTSEEECCCTTSCC---SCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------CCcEEEEcccccCC---CCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 02567788887753 23578999999887777778899999999999999999854
Q ss_pred cCcc---hh--hhh--ccCCCCC-cccCCCHHHHHHHHHhCC
Q 015160 334 GPLL---YH--FAD--LYGQEDE-MSIELSLEDVKRVALHYG 367 (412)
Q Consensus 334 GPLl---yh--~~~--~~g~~~~-~~ieLS~EEL~~ll~~~G 367 (412)
.|.. |. +.. ..+.... ....+|.++++++++ |
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 132 VLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred ecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 3321 11 000 0111111 123479999999997 8
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=119.20 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=97.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccc
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~ 247 (412)
|...+..+...+.. .++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++..+... +
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~------- 145 (258)
T 2pwy_A 81 YPKDASAMVTLLDL---APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF-----W------- 145 (258)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-----C-------
T ss_pred cchHHHHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh-----c-------
Confidence 44445555555532 25679999999999999999998 689999999999997766332100 0
Q ss_pred ccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPG 327 (412)
+ ..++.+..+|+.+... ..++||+|+.. .++..++++.+.++||||
T Consensus 146 -------------g-------------~~~v~~~~~d~~~~~~---~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~g 191 (258)
T 2pwy_A 146 -------------Q-------------VENVRFHLGKLEEAEL---EEAAYDGVALD-----LMEPWKVLEKAALALKPD 191 (258)
T ss_dssp -------------C-------------CCCEEEEESCGGGCCC---CTTCEEEEEEE-----SSCGGGGHHHHHHHEEEE
T ss_pred -------------C-------------CCCEEEEECchhhcCC---CCCCcCEEEEC-----CcCHHHHHHHHHHhCCCC
Confidence 0 0136788899887621 24789999863 234457899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
|+++-+.|.. -..+++...+++.||+.++
T Consensus 192 G~l~~~~~~~----------------~~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 192 RFLVAYLPNI----------------TQVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEEEEEESCH----------------HHHHHHHHHHTTTTEEEEE
T ss_pred CEEEEEeCCH----------------HHHHHHHHHHHHCCCceEE
Confidence 9998644321 1245777788889999876
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-11 Score=119.73 Aligned_cols=162 Identities=18% Similarity=0.155 Sum_probs=106.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++-.+.. .
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~---~----------------------------- 228 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD---A----------------------------- 228 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH---T-----------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHh---c-----------------------------
Confidence 5679999999999999999998 568999999 9999766622210 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecC--cch----
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGP--LLY---- 338 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GP--Lly---- 338 (412)
....++.+..+|+.+.. | ..||+|+....+... +.....++.++++|||||++|-..+ .+-
T Consensus 229 ------~~~~~v~~~~~d~~~~~--~---~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 297 (374)
T 1qzz_A 229 ------GLADRVTVAEGDFFKPL--P---VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 297 (374)
T ss_dssp ------TCTTTEEEEECCTTSCC--S---CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------
T ss_pred ------CCCCceEEEeCCCCCcC--C---CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC
Confidence 01124889999998622 2 349999987655433 2346899999999999998874332 210
Q ss_pred -hhhhccCC---CCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcC
Q 015160 339 -HFADLYGQ---EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKS 403 (412)
Q Consensus 339 -h~~~~~g~---~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~ 403 (412)
.+....+. .....-.++.++++++++++||++++.......+ ..+....++++|+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~---------~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 298 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTT---------LPFDFSILEFTAVS 357 (374)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSS---------CSSCEEEEEEEECC
T ss_pred cchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCc---------ccCCcEEEEEEECc
Confidence 00000000 0000235799999999999999998865322110 11233567788874
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-12 Score=125.00 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=79.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..|+-.+.. +
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~----~----------------------------- 83 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVEL----N----------------------------- 83 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHH----c-----------------------------
Confidence 456999999999999999999997 89999999 698766633211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++.++.+|+.++.. ..++||+|++. +++.....+..++..+.++|||||++|
T Consensus 84 -----~~~~~i~~~~~d~~~~~~---~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 84 -----GFSDKITLLRGKLEDVHL---PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCCEEEEECchhhccC---CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 011247889999988643 24789999986 456666678899999999999999998
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=4e-13 Score=126.58 Aligned_cols=139 Identities=15% Similarity=0.163 Sum_probs=82.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..|+++|. .|+|+|+|+.||..+.... .+ ... ..
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~---~~---~~~-------------------~~---- 87 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD---ER---VVV-------------------ME---- 87 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC---TT---EEE-------------------EC----
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC---cc---ccc-------------------cc----
Confidence 456999999999999999999996 9999999999986543110 00 000 00
Q ss_pred CCCCCCCCCceeEEe-cccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccC
Q 015160 268 HPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYG 345 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~-GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g 345 (412)
..++.+.. +|+.... .....||+|+.. +..+|+.++++|||||+++- +.|..-......+
T Consensus 88 -------~~~~~~~~~~~~~~~~---~d~~~~D~v~~~--------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~ 149 (232)
T 3opn_A 88 -------QFNFRNAVLADFEQGR---PSFTSIDVSFIS--------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVG 149 (232)
T ss_dssp -------SCCGGGCCGGGCCSCC---CSEEEECCSSSC--------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC
T ss_pred -------cceEEEeCHhHcCcCC---CCEEEEEEEhhh--------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhC
Confidence 00111111 2322100 012345544322 25789999999999999986 3443211000011
Q ss_pred CC----CCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QE----DEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~----~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.. +......+.+++.++++++||+++...
T Consensus 150 ~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 150 KNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 00 111123488999999999999998754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=120.91 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=94.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++|.. |+|+|+|..|+..++..+.. +
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~----n----------------------------- 171 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL----N----------------------------- 171 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 4679999999999999999999985 99999999999776622110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
...+++.+..+|+.++.. .++||+|+.. ......++++.+.++|||||+++-.... ...
T Consensus 172 -----~~~~~v~~~~~D~~~~~~----~~~fD~Vi~~----~p~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~----- 230 (278)
T 2frn_A 172 -----KVEDRMSAYNMDNRDFPG----ENIADRILMG----YVVRTHEFIPKALSIAKDGAIIHYHNTV---PEK----- 230 (278)
T ss_dssp -----TCTTTEEEECSCTTTCCC----CSCEEEEEEC----CCSSGGGGHHHHHHHEEEEEEEEEEEEE---EGG-----
T ss_pred -----CCCceEEEEECCHHHhcc----cCCccEEEEC----CchhHHHHHHHHHHHCCCCeEEEEEEee---ccc-----
Confidence 011237889999988643 5789999774 3334467899999999999999842110 000
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
....-..+++.+++++.||++..
T Consensus 231 --~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 231 --LMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp --GTTTTTHHHHHHHHHHTTCEEEE
T ss_pred --cccccHHHHHHHHHHHcCCeeEE
Confidence 01234678999999999999876
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-12 Score=124.14 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCChhH-HHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLA-LEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa-~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++ ..+|+ .|..|+|+|+|..|+..|+-.+...
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------------------------------- 169 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL-------------------------------- 169 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH--------------------------------
T ss_pred CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc--------------------------------
Confidence 6789999999999875 66676 4999999999999998887433210
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.. .++.+..||+.++. .++||+|+.... .++..++++.++++|||||+++-
T Consensus 170 ------gl-~~v~~v~gDa~~l~-----d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 170 ------GV-DGVNVITGDETVID-----GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp ------TC-CSEEEEESCGGGGG-----GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred ------CC-CCeEEEECchhhCC-----CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEE
Confidence 11 24889999998863 478999987544 45678999999999999999985
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-11 Score=116.50 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=98.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
.+++.+.+.++ .++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++......
T Consensus 97 ~l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~---------------- 156 (276)
T 2b3t_A 97 CLVEQALARLP----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL---------------- 156 (276)
T ss_dssp HHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 35566666554 14569999999999999999976 789999999999998776322100
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------- 310 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------- 310 (412)
+ ..++.+..+|+.+... .++||+|++.. |+...
T Consensus 157 ----------~-------------~~~v~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~ 209 (276)
T 2b3t_A 157 ----------A-------------IKNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVA 209 (276)
T ss_dssp ----------T-------------CCSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBC
T ss_pred ----------C-------------CCceEEEEcchhhhcc----cCCccEEEECCCCCCccccccChhhhhcCcHHHHcC
Confidence 0 0137789999887532 46899999873 33321
Q ss_pred -----hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 311 -----HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 311 -----~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
......++.+.++|||||+++-.- + ..+.+++++++++.||+.+.
T Consensus 210 ~~~g~~~~~~~l~~~~~~LkpgG~l~~~~----------~-------~~~~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 210 ADSGMADIVHIIEQSRNALVSGGFLLLEH----------G-------WQQGEAVRQAFILAGYHDVE 259 (276)
T ss_dssp HHHHTHHHHHHHHHHGGGEEEEEEEEEEC----------C-------SSCHHHHHHHHHHTTCTTCC
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCEEEEEE----------C-------chHHHHHHHHHHHCCCcEEE
Confidence 346778999999999999998421 0 13578999999999998654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=113.98 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+.. . +
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~---~-----------------------~----- 86 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKD---S-----------------------E----- 86 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH---S-----------------------C-----
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHH---c-----------------------C-----
Confidence 4568999999999999999998 78999999999999776632210 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh----h---h--HHHHHHHHHHhccCCcEEEEecCcc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----H---N--IVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta----~---N--i~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
..++.++.+|+.++.. ....++||.|+.+| -+.- + . ...+++.++++|||||+++-..+.
T Consensus 87 --------~~nv~~~~~d~~~l~~-~~~~~~~d~v~~~~-~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~- 155 (213)
T 2fca_A 87 --------AQNVKLLNIDADTLTD-VFEPGEVKRVYLNF-SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN- 155 (213)
T ss_dssp --------CSSEEEECCCGGGHHH-HCCTTSCCEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC-
T ss_pred --------CCCEEEEeCCHHHHHh-hcCcCCcCEEEEEC-CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC-
Confidence 0237888999887531 01257899987654 2210 0 0 257899999999999999842110
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.--.+++..++.+.||++...
T Consensus 156 ---------------~~~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 156 ---------------RGLFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp ---------------HHHHHHHHHHHHHHTCEEEEE
T ss_pred ---------------HHHHHHHHHHHHHCCCccccc
Confidence 011346667777889988764
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=115.83 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=79.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..++++ +..|+|+|+|..|+..++..+.. . +
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~-----------------------~---~----- 78 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER-----------------------F---G----- 78 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------------------------------
T ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH-----------------------h---C-----
Confidence 5679999999999999999999 56999999999998655411100 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEec-ccCC-------------------------hhhHHHHHHH
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCF-FIDT-------------------------AHNIVEYIEI 319 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~F-FIDt-------------------------a~Ni~~yl~~ 319 (412)
.++.+..+|+.+.... ....++||+|++.. |... .....++++.
T Consensus 79 ---------~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (215)
T 4dzr_A 79 ---------AVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAAL 149 (215)
T ss_dssp -------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTC
T ss_pred ---------CceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHH
Confidence 0356788888873320 00127899999852 2111 0112678899
Q ss_pred HHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHH--hCCCEEEEEe
Q 015160 320 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVAL--HYGFEFEKEK 374 (412)
Q Consensus 320 I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~--~~GFeii~e~ 374 (412)
++++|||||+++-+.. -.-..+++.+++. +.||..++..
T Consensus 150 ~~~~LkpgG~l~~~~~----------------~~~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 150 PPYVLARGRAGVFLEV----------------GHNQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp CGGGBCSSSEEEEEEC----------------TTSCHHHHHHHTGGGGGGTEECCEE
T ss_pred HHHHhcCCCeEEEEEE----------------CCccHHHHHHHHHHhhcCCceEEEE
Confidence 9999999999432110 0134678899999 8999776543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.7e-12 Score=113.61 Aligned_cols=129 Identities=14% Similarity=0.098 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++..+... +
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~--------------------------~----- 89 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV--------------------------G----- 89 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH--------------------------C-----
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc--------------------------C-----
Confidence 4568999999999999999998 579999999999997766322100 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh----h-----hHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----H-----NIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta----~-----Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
..++.++.+|+.++.. ....++||+|++.|- +.. + ....+++.++++|||||+++-..+.
T Consensus 90 --------~~~v~~~~~d~~~~~~-~~~~~~~D~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 158 (214)
T 1yzh_A 90 --------VPNIKLLWVDGSDLTD-YFEDGEIDRLYLNFS-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN- 158 (214)
T ss_dssp --------CSSEEEEECCSSCGGG-TSCTTCCSEEEEESC-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC-
T ss_pred --------CCCEEEEeCCHHHHHh-hcCCCCCCEEEEECC-CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC-
Confidence 0237889999887531 012578999998753 211 0 1257999999999999998742110
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.--.+++.+++.+.||+++...
T Consensus 159 ---------------~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 159 ---------------RGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp ---------------HHHHHHHHHHHHHHTCEEEEEE
T ss_pred ---------------HHHHHHHHHHHHHCCCeeeecc
Confidence 0013677888888999988754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=120.09 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=103.5
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
...|.+.++-. +..+|||+|||+|.++..|+++ +..++++|+ ..|+..++-.+...
T Consensus 191 ~~~l~~~~~~~---~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------------------ 248 (369)
T 3gwz_A 191 AGQVAAAYDFS---GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR------------------ 248 (369)
T ss_dssp HHHHHHHSCCT---TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT------------------
T ss_pred HHHHHHhCCCc---cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc------------------
Confidence 34455555422 5679999999999999999998 668999999 99987666322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~w 330 (412)
....++.+..+||.+.. | ..||+|+....+... +...+.|+.++++|||||++
T Consensus 249 --------------------~l~~~v~~~~~d~~~~~--p---~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 303 (369)
T 3gwz_A 249 --------------------GLADRCEILPGDFFETI--P---DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRL 303 (369)
T ss_dssp --------------------TCTTTEEEEECCTTTCC--C---SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEE
T ss_pred --------------------CcCCceEEeccCCCCCC--C---CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 11235889999998422 2 379999987655433 33458999999999999999
Q ss_pred EEecCcchh-------hhhc--cCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 331 INLGPLLYH-------FADL--YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 331 IN~GPLlyh-------~~~~--~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|-..++.-. +.+. ... ...-+.+.+|++++++++||++++..
T Consensus 304 ~i~e~~~~~~~~~~~~~~d~~~~~~--~~g~~~t~~e~~~ll~~aGf~~~~~~ 354 (369)
T 3gwz_A 304 LVIDNLIDERPAASTLFVDLLLLVL--VGGAERSESEFAALLEKSGLRVERSL 354 (369)
T ss_dssp EEEEEBCCSSCCHHHHHHHHHHHHH--HSCCCBCHHHHHHHHHTTTEEEEEEE
T ss_pred EEEEeccCCCCCCchhHhhHHHHhh--cCCccCCHHHHHHHHHHCCCeEEEEE
Confidence 853222100 0000 000 01236899999999999999998865
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=112.30 Aligned_cols=104 Identities=11% Similarity=0.086 Sum_probs=78.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..|+++ | -.|+|+|+|..|+..++..+...
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 70 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL------------------------------- 70 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4579999999999999999997 2 48999999999998776332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c--------cCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F--------IDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F--------IDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|+.++... ..++||+|++.. | +....+..++++.+.++|||||+++-
T Consensus 71 -------~~~~~v~~~~~d~~~~~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 71 -------NLIDRVTLIKDGHQNMDKY--IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp -------TCGGGEEEECSCGGGGGGT--CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCCeEEEECCHHHHhhh--ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence 0112478899998887421 247899999775 2 23344567899999999999999985
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-12 Score=110.38 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..++++|..|+|+|+|..|+..++..+... +
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~------- 87 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT--------------------------G------- 87 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 3468999999999999999999999999999999998776322110 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEec-ccCChhhHHHHHHHHH--HhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCF-FIDTAHNIVEYIEIIS--RILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~F-FIDta~Ni~~yl~~I~--~~LKPGG~wIN 332 (412)
. ++.+..+|+.+... .+...++||+|++.. |... ..+.++.+. ++|||||+++-
T Consensus 88 -----~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~---~~~~~~~~~~~~~L~~gG~~~~ 145 (171)
T 1ws6_A 88 -----L--GARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMD---LAALFGELLASGLVEAGGLYVL 145 (171)
T ss_dssp -----C--CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSC---TTHHHHHHHHHTCEEEEEEEEE
T ss_pred -----C--ceEEEeccHHHHHHhhhccCCceEEEEECCCCchh---HHHHHHHHHhhcccCCCcEEEE
Confidence 0 25778888877421 011124799999873 2233 334555555 99999999984
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-11 Score=114.85 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=97.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccc
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~ 247 (412)
|+.-+..+...+.. .++.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++..+...
T Consensus 97 ~~~~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------- 160 (277)
T 1o54_A 97 YPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW------------- 160 (277)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-------------
T ss_pred CHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-------------
Confidence 34444455554432 25679999999999999999998 579999999999997776322110
Q ss_pred ccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPG 327 (412)
....++.+..+|+.+... .+.||+|+.. .++..++++.+.++||||
T Consensus 161 -------------------------~~~~~v~~~~~d~~~~~~----~~~~D~V~~~-----~~~~~~~l~~~~~~L~pg 206 (277)
T 1o54_A 161 -------------------------GLIERVTIKVRDISEGFD----EKDVDALFLD-----VPDPWNYIDKCWEALKGG 206 (277)
T ss_dssp -------------------------TCGGGEEEECCCGGGCCS----CCSEEEEEEC-----CSCGGGTHHHHHHHEEEE
T ss_pred -------------------------CCCCCEEEEECCHHHccc----CCccCEEEEC-----CcCHHHHHHHHHHHcCCC
Confidence 001237788899887632 4689999863 234568899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
|+++-..|.. -..+++.+.+++.||..++.
T Consensus 207 G~l~~~~~~~----------------~~~~~~~~~l~~~gf~~~~~ 236 (277)
T 1o54_A 207 GRFATVCPTT----------------NQVQETLKKLQELPFIRIEV 236 (277)
T ss_dssp EEEEEEESSH----------------HHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEeCCH----------------HHHHHHHHHHHHCCCceeEE
Confidence 9998644321 12367778888899998774
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-12 Score=113.53 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=85.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+||++|||. | ++|+|..|+..++-..
T Consensus 12 ~g~~vL~~~~g~-------------v-~vD~s~~ml~~a~~~~------------------------------------- 40 (176)
T 2ld4_A 12 AGQFVAVVWDKS-------------S-PVEALKGLVDKLQALT------------------------------------- 40 (176)
T ss_dssp TTSEEEEEECTT-------------S-CHHHHHHHHHHHHHHT-------------------------------------
T ss_pred CCCEEEEecCCc-------------e-eeeCCHHHHHHHHHhc-------------------------------------
Confidence 678999999996 2 3899999997665110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
..++.+..+|+.++...+...++||+|++.+.+... .+..+.|++++++|||||+++-..|..- . .+ .
T Consensus 41 ------~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~---~-~~-~ 109 (176)
T 2ld4_A 41 ------GNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVET---A-VD-N 109 (176)
T ss_dssp ------TTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEES---S-SC-S
T ss_pred ------ccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccc---c-cc-c
Confidence 001567888988763211135889999988766665 6778999999999999999996544311 0 01 1
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
..+..+.+++.++++++|| +..
T Consensus 110 --~~~~~~~~~~~~~l~~aGf-i~~ 131 (176)
T 2ld4_A 110 --NSKVKTASKLCSALTLSGL-VEV 131 (176)
T ss_dssp --SSSSCCHHHHHHHHHHTTC-EEE
T ss_pred --ccccCCHHHHHHHHHHCCC-cEe
Confidence 2345789999999999999 553
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=103.79 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..++++ +..++|+|+|. |+..
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------------------------------- 61 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------------------------------- 61 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------------------------------
Confidence 5669999999999999999998 47999999999 8410
Q ss_pred CCCCCCCCCCCceeEEecccccccC---CC--CCCCCccEEEEecccCChhhH-----------HHHHHHHHHhccCCcE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS---DP--SQVGAWDAVVTCFFIDTAHNI-----------VEYIEIISRILKDGGV 329 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~---~~--~~~~~fD~VvT~FFIDta~Ni-----------~~yl~~I~~~LKPGG~ 329 (412)
.++.+..+|+.+... .+ ...++||+|++...+....+. ..+++.+.++|||||+
T Consensus 62 ----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 131 (180)
T 1ej0_A 62 ----------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS 131 (180)
T ss_dssp ----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ----------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcE
Confidence 125677888876520 00 014789999986433322221 6889999999999999
Q ss_pred EEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 015160 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 330 wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
++-..+. .-..+++...+... |+.+......... ..-...|+++++.
T Consensus 132 l~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 178 (180)
T 1ej0_A 132 FVVKVFQ----------------GEGFDEYLREIRSL-FTKVKVRKPDSSR---------ARSREVYIVATGR 178 (180)
T ss_dssp EEEEEES----------------STTHHHHHHHHHHH-EEEEEEECCTTSC---------TTCCEEEEEEEEE
T ss_pred EEEEEec----------------CCcHHHHHHHHHHh-hhhEEeecCCccc---------ccCceEEEEEccC
Confidence 9853221 12346777777774 7766543222111 1224667777764
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.8e-13 Score=122.01 Aligned_cols=136 Identities=13% Similarity=0.020 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..||++|..|+|+|+|..|+..++..+...
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------- 123 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVY---------------------------------- 123 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 4569999999999999999999999999999999998776332110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC-
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE- 347 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~- 347 (412)
....++.++.+|+.++.. .++||+|++..-+....+....+..++++|||||++|- -+.... ...
T Consensus 124 ----~~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~-----~~~~~~-~~~~ 189 (241)
T 3gdh_A 124 ----GIADKIEFICGDFLLLAS----FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIF-----RLSKKI-TNNI 189 (241)
T ss_dssp ----TCGGGEEEEESCHHHHGG----GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHH-----HHHHHH-CSCE
T ss_pred ----CCCcCeEEEECChHHhcc----cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHH-----HHHHhh-CCce
Confidence 001247899999988642 47999999875333333344467788999999999762 111100 000
Q ss_pred -CCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 348 -DEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 348 -~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
....-.++.+++..++..-|.-.+.
T Consensus 190 ~~~lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 190 VYFLPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp EEEEETTBCHHHHHHTTCTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHhccCCCEEEE
Confidence 0012346889999998876654443
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=111.68 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=94.0
Q ss_pred CcchHHHHHHHHHHHhc--CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEE
Q 015160 142 LADVDKVRCIIRNIVRD--WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQG 216 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RD--WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~G 216 (412)
..|-+.+...+.++.+. |-..-..+.. .++..+.... ++.+|||+|||+|.++..||+. |..|+|
T Consensus 19 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~~~------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~ 88 (221)
T 3u81_A 19 PGDPQSVLEAIDTYCTQKEWAMNVGDAKG----QIMDAVIREY------SPSLVLELGAYCGYSAVRMARLLQPGARLLT 88 (221)
T ss_dssp TTCHHHHHHHHHHHHHHHTCGGGCCHHHH----HHHHHHHHHH------CCSEEEEECCTTSHHHHHHHTTSCTTCEEEE
T ss_pred CCCHHHHHHHHHHHhhhcCcCcccCHHHH----HHHHHHHHhc------CCCEEEEECCCCCHHHHHHHHhCCCCCEEEE
Confidence 35557788888888764 5322222222 2444444432 3569999999999999999984 789999
Q ss_pred EeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CC--C
Q 015160 217 NEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DP--S 293 (412)
Q Consensus 217 nD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-~~--~ 293 (412)
+|+|..|+..|+-.+... ...+++.++.||+.++.. .+ .
T Consensus 89 vD~~~~~~~~a~~~~~~~--------------------------------------~~~~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 89 MEINPDCAAITQQMLNFA--------------------------------------GLQDKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp EESCHHHHHHHHHHHHHH--------------------------------------TCGGGEEEEESCHHHHGGGTTTTS
T ss_pred EeCChHHHHHHHHHHHHc--------------------------------------CCCCceEEEECCHHHHHHHHHHhc
Confidence 999999998776332210 011247889999876422 10 0
Q ss_pred CCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 294 QVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 294 ~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++||+|+.........+..++++.+ ++|||||++|-
T Consensus 131 ~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~ 168 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLA 168 (221)
T ss_dssp CCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEE
T ss_pred CCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEE
Confidence 126899997654333334455677777 99999999984
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-11 Score=112.43 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=78.0
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||+ .+..|+|+|+|..|+..|+..+...
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 118 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY-------------------------------- 118 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 456999999999999999999 5789999999999998776333210
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
....++.+..+|+.+.... ...++||+|+... ...+...+++.+.++|||||++|--
T Consensus 119 ------~~~~~v~~~~~d~~~~~~~-~~~~~fD~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 119 ------HFENQVRIIEGNALEQFEN-VNDKVYDMIFIDA---AKAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp ------TCTTTEEEEESCGGGCHHH-HTTSCEEEEEEET---TSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred ------CCCCcEEEEECCHHHHHHh-hccCCccEEEEcC---cHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 0112478999999875320 1147899997543 2445778999999999999999853
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-12 Score=114.18 Aligned_cols=104 Identities=15% Similarity=0.044 Sum_probs=75.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
+.+|||+|||+|.++.+++.+|. .|+|+|+|..|+..++..+... ++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--------------------------~~------ 101 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL--------------------------KC------ 101 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------TC------
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh--------------------------CC------
Confidence 46899999999999999988886 8999999999998776322110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCC-ccEEEEecccCChhhHHHHHHHH--HHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEII--SRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~-fD~VvT~FFIDta~Ni~~yl~~I--~~~LKPGG~wIN 332 (412)
...++.++.+|+.++... ...++ ||+|++..-+. ..+..+.++.+ .++|||||+++-
T Consensus 102 -----~~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i 161 (201)
T 2ift_A 102 -----SSEQAEVINQSSLDFLKQ-PQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYV 161 (201)
T ss_dssp -----CTTTEEEECSCHHHHTTS-CCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----CccceEEEECCHHHHHHh-hccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEE
Confidence 002378899998875321 12468 99998764222 34566788888 668999999984
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-11 Score=117.13 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=93.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++.++++. +..|+|+|+|..|+..++-.+..... ..
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~------------------------~~---- 146 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR------------------------SL---- 146 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG------------------------GG----
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc------------------------cc----
Confidence 4579999999999999999988 46899999999999877632210000 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhH--HHHHHHHHHhccCCcEEEEecCcchhhhh
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWINLGPLLYHFAD 342 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni--~~yl~~I~~~LKPGG~wIN~GPLlyh~~~ 342 (412)
...++.++.+|+.++... ...++||+|++..+... ...+ .++++.++++|||||+++...+-.|.
T Consensus 147 -------~~~~v~~~~~D~~~~~~~-~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--- 215 (304)
T 3bwc_A 147 -------ADPRATVRVGDGLAFVRQ-TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL--- 215 (304)
T ss_dssp -------GCTTEEEEESCHHHHHHS-SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT---
T ss_pred -------CCCcEEEEECcHHHHHHh-ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc---
Confidence 012478899998875321 02578999998654322 1222 58999999999999999863221110
Q ss_pred ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-....+++.+.++++||..+...
T Consensus 216 ---------~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 216 ---------DLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp ---------CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ---------chHHHHHHHHHHHhCCCCcEEEE
Confidence 01246788889999999887644
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-11 Score=115.33 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=101.4
Q ss_pred HHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhh
Q 015160 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fil 231 (412)
=+|.|... |. .+-..|.+-+....-+++.+|||+|||+|.++..||+. | -.|+|+|+|..|+..++-.
T Consensus 51 e~r~w~p~----rs----klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~- 121 (233)
T 4df3_A 51 EYREWNAY----RS----KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV- 121 (233)
T ss_dssp EEEECCTT----TC----HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHH-
T ss_pred eeeeECCC----ch----HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-
Confidence 37888753 32 24455555444333458899999999999999999987 4 4799999999999654411
Q ss_pred hcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh
Q 015160 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311 (412)
Q Consensus 232 n~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~ 311 (412)
+.+ ..|+..+.+|..+....+...+.+|+|+..+.. ..
T Consensus 122 --a~~--------------------------------------~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~--~~ 159 (233)
T 4df3_A 122 --VRD--------------------------------------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQ--PE 159 (233)
T ss_dssp --STT--------------------------------------CTTEEEEESCTTCGGGGTTTCCCEEEEEECCCC--TT
T ss_pred --hHh--------------------------------------hcCeeEEEEeccCccccccccceEEEEEEeccC--Ch
Confidence 111 013555666665543223345789988754432 23
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 312 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 312 Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+....+..+++.|||||.++-. +.+.-.+. ..++. -...+..+.|++.||++++..
T Consensus 160 ~~~~~l~~~~r~LKpGG~lvI~--ik~r~~d~-~~p~~----~~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 160 QAAIVVRNARFFLRDGGYMLMA--IKARSIDV-TTEPS----EVYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE--EECCHHHH-HTCCC----HHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHHHHhccCCCEEEEE--EecccCCC-CCChH----HHHHHHHHHHHHCCCEEEEEE
Confidence 4668899999999999999842 11111111 11111 112344456778899998754
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-11 Score=116.82 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||||||+|.++.++|..+ ..|+|+|+|..|+..|+..+...
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~------------------------------- 251 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS------------------------------- 251 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 56789999999999999999986 89999999999998777332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc--cCChhh----HHHHHHHHHHhccCCcEEEEecCcc
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHN----IVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FF--IDta~N----i~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
... ++.+..+|+.++.. ..+.||+|++. |. +....+ ..++++.+.++|||||.++-+.|
T Consensus 252 -------g~~-~i~~~~~D~~~~~~---~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-- 318 (354)
T 3tma_A 252 -------GLS-WIRFLRADARHLPR---FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL-- 318 (354)
T ss_dssp -------TCT-TCEEEECCGGGGGG---TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES--
T ss_pred -------CCC-ceEEEeCChhhCcc---ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC--
Confidence 011 37889999998753 24569999985 32 222222 25789999999999999985321
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEE
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRK 401 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK 401 (412)
+.+.++.+++ .||+..+...+ | .....+.+||++|
T Consensus 319 -----------------~~~~~~~~~~-~g~~~~~~~~l---~--------~g~l~~~i~vl~r 353 (354)
T 3tma_A 319 -----------------RPALLKRALP-PGFALRHARVV---E--------QGGVYPRVFVLEK 353 (354)
T ss_dssp -----------------CHHHHHHHCC-TTEEEEEEEEC---C--------BTTBCCEEEEEEE
T ss_pred -----------------CHHHHHHHhh-cCcEEEEEEEE---E--------eCCEEEEEEEEEc
Confidence 2334555666 89999876642 1 2233577888877
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=121.69 Aligned_cols=138 Identities=19% Similarity=0.158 Sum_probs=86.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||||.++..|+++|. .|+|+|+|+.||..+.. +. .. +
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r--~~---~r-----------------------v----- 131 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR--QD---DR-----------------------V----- 131 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH--TC---TT-----------------------E-----
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH--hC---cc-----------------------c-----
Confidence 456999999999999999999997 89999999999854220 00 00 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYG 345 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g 345 (412)
..+...++..+........+||+|++.. |++ +...|..++++|||||.+|- +.|.+-.-....+
T Consensus 132 ----------~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s----l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~ 197 (291)
T 3hp7_A 132 ----------RSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS----LNLILPALAKILVDGGQVVALVKPQFEAGREQIG 197 (291)
T ss_dssp ----------EEECSCCGGGCCGGGCTTCCCSEEEECCSSSC----GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC
T ss_pred ----------ceecccCceecchhhCCCCCCCEEEEEeeHhh----HHHHHHHHHHHcCcCCEEEEEECcccccChhhcC
Confidence 0011112211110000124599887643 553 45789999999999999986 4553211111111
Q ss_pred --CC--CCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 346 --QE--DEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 346 --~~--~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+. +......+.+++..++..+||++...
T Consensus 198 ~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 198 KNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 10 01122358899999999999998874
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-12 Score=128.35 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=85.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+++.|.+.+... ..++.+|||+|||+|.++..++++|..|+|+|+|..|+..++..+.. +
T Consensus 218 ~ll~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~----~-------------- 278 (381)
T 3dmg_A 218 LLLEALQERLGPE-GVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA----N-------------- 278 (381)
T ss_dssp HHHHHHHHHHCTT-TTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHHHhhccc-CCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 3555555543210 11457999999999999999999999999999999999877632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-----ChhhHHHHHHHHHHhccCC
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-----TAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID-----ta~Ni~~yl~~I~~~LKPG 327 (412)
. .++.++.+|+.+... ..++||+|++..-+. +..+..++|+.+.++||||
T Consensus 279 --------~--------------~~v~~~~~D~~~~~~---~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpG 333 (381)
T 3dmg_A 279 --------A--------------LKAQALHSDVDEALT---EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPG 333 (381)
T ss_dssp --------T--------------CCCEEEECSTTTTSC---TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEE
T ss_pred --------C--------------CCeEEEEcchhhccc---cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcC
Confidence 0 015778899887643 247999999873222 2456789999999999999
Q ss_pred cEEEEe
Q 015160 328 GVWINL 333 (412)
Q Consensus 328 G~wIN~ 333 (412)
|+++-.
T Consensus 334 G~l~iv 339 (381)
T 3dmg_A 334 GVFFLV 339 (381)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999864
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-11 Score=115.67 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=98.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|||+|.++..|+++ +..++++|+ +.|+..++-.+.. .
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~---~----------------------------- 215 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLD---T----------------------------- 215 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH---T-----------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhh---c-----------------------------
Confidence 4579999999999999999986 568999999 9998766622210 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchh-----
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYH----- 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh----- 339 (412)
....++.+..+||.+-. | ..||+|+....+..- +...+.|++++++|||||+++-..+..-.
T Consensus 216 ------~~~~~v~~~~~d~~~~~--p---~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 284 (332)
T 3i53_A 216 ------GLSGRAQVVVGSFFDPL--P---AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGT 284 (332)
T ss_dssp ------TCTTTEEEEECCTTSCC--C---CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCH
T ss_pred ------CcCcCeEEecCCCCCCC--C---CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccH
Confidence 11234889999997422 2 279999987755432 33689999999999999999853222110
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..+..-......-+.+.+|++++++++||++++...
T Consensus 285 ~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 285 GMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp HHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000000000012367999999999999999988653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-11 Score=115.49 Aligned_cols=140 Identities=14% Similarity=0.051 Sum_probs=97.8
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+|||+|||+|.++..|+++ +..++|+|+ ..|+..++-.+...
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~---------------------------------- 213 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL---------------------------------- 213 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH----------------------------------
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc----------------------------------
Confidence 79999999999999999988 678999999 99987665222100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcch-------h
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLY-------H 339 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLly-------h 339 (412)
....++.+..+|+.+. . .+.||+|+....+. ..+.....++.++++|||||++|-..+..- .
T Consensus 214 ----~~~~~v~~~~~d~~~~-~----~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~ 284 (334)
T 2ip2_A 214 ----LAGERVSLVGGDMLQE-V----PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMS 284 (334)
T ss_dssp ----HHTTSEEEEESCTTTC-C----CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHH
T ss_pred ----CCCCcEEEecCCCCCC-C----CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchh
Confidence 0012478999999872 2 25799999877654 344566999999999999999885422210 0
Q ss_pred -hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 -FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 -~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..+..-.......+.+.+|++++++++||++++..
T Consensus 285 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 320 (334)
T 2ip2_A 285 VLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV 320 (334)
T ss_dssp HHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred HHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence 00000000000235799999999999999998765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-11 Score=117.49 Aligned_cols=143 Identities=20% Similarity=0.185 Sum_probs=97.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|||+|.++..|++++ ..++++|+ ..|+..++-.+...
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 229 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-------------------------------- 229 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--------------------------------
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc--------------------------------
Confidence 56799999999999999999985 57889999 88987666222100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCc-ch-----
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPL-LY----- 338 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN~GPL-ly----- 338 (412)
....++.+..+|+.+.. | ..||+|+....+.. .++..+.++.++++|||||++|-..+. +-
T Consensus 230 ------~~~~~v~~~~~d~~~~~--~---~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 298 (360)
T 1tw3_A 230 ------GLSDRVDVVEGDFFEPL--P---RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN 298 (360)
T ss_dssp ------TCTTTEEEEECCTTSCC--S---SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS
T ss_pred ------CCCCceEEEeCCCCCCC--C---CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc
Confidence 01124789999988632 2 34999988765533 234468999999999999988854333 10
Q ss_pred hhh---hccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 339 HFA---DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 339 h~~---~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.+. +..-.......+.+.+|++++++++||++++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 299 EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred chhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 000 0000000002357999999999999999988653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=126.95 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=101.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|+++..||++| ..|+|+|+|..|+..|+..++..... ..
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA-----------------kr--------- 774 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK-----------------EA--------- 774 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT-----------------TC---------
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch-----------------hh---------
Confidence 46799999999999999999998 89999999999998876433211000 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEEecCcc-hh--h
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLGPLL-YH--F 340 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wIN~GPLl-yh--~ 340 (412)
....++.+.+||+.++.. ..++||+|++...|....+ ...+++.++++|||| ++|-..|.. |. |
T Consensus 775 -------~gl~nVefiqGDa~dLp~---~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF 843 (950)
T 3htx_A 775 -------CNVKSATLYDGSILEFDS---RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTIL 843 (950)
T ss_dssp -------SSCSEEEEEESCTTSCCT---TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHH
T ss_pred -------cCCCceEEEECchHhCCc---ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhh
Confidence 001248899999988643 3689999998865554333 457999999999999 444322221 10 1
Q ss_pred hh-----------c--cC--CCCCcccCCCHHHHHH----HHHhCCCEEEEEe
Q 015160 341 AD-----------L--YG--QEDEMSIELSLEDVKR----VALHYGFEFEKEK 374 (412)
Q Consensus 341 ~~-----------~--~g--~~~~~~ieLS~EEL~~----ll~~~GFeii~e~ 374 (412)
.. . .+ ..+...++++.+|++. ++.+.||++....
T Consensus 844 ~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvG 896 (950)
T 3htx_A 844 QRSTPETQEENNSEPQLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSG 896 (950)
T ss_dssp TCC------------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhcccccccccccccccccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEc
Confidence 10 0 00 0112356789999988 7788899887654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-11 Score=113.89 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=78.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||+. +..|+|+|+|..|+..++-.+...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 111 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA------------------------------- 111 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4569999999999999999998 889999999999998776332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G 334 (412)
....++.+..||+.+........++||+|+... ...+...|++.+.++|||||++|--.
T Consensus 112 -------g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 112 -------GVDQRVTLREGPALQSLESLGECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp -------TCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred -------CCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 111347889999877432111235899997633 24567789999999999999998533
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=109.36 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=80.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++..+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+...
T Consensus 64 ~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 122 (210)
T 3lbf_A 64 YMVARMTELLEL---TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNL------------------ 122 (210)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc------------------
Confidence 355555555542 25679999999999999999999999999999999998776332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
+ ..++.+..+|+.+... ..++||+|+....+.... +.+.++|||||++|-
T Consensus 123 --------~-------------~~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~~~~------~~~~~~L~pgG~lv~ 172 (210)
T 3lbf_A 123 --------D-------------LHNVSTRHGDGWQGWQ---ARAPFDAIIVTAAPPEIP------TALMTQLDEGGILVL 172 (210)
T ss_dssp --------T-------------CCSEEEEESCGGGCCG---GGCCEEEEEESSBCSSCC------THHHHTEEEEEEEEE
T ss_pred --------C-------------CCceEEEECCcccCCc---cCCCccEEEEccchhhhh------HHHHHhcccCcEEEE
Confidence 0 0137889999887543 257899999876544332 258899999999985
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=9.7e-12 Score=109.21 Aligned_cols=103 Identities=18% Similarity=0.082 Sum_probs=74.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+...
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 77 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT--------------------------------- 77 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT---------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 456999999999999999999985 8999999999998776322100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHH--HhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS--RILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~--~~LKPGG~wIN 332 (412)
....++.+..+|+.+... ...+.||+|++..-.. .....+.++.+. ++|||||+++-
T Consensus 78 -----~~~~~~~~~~~d~~~~~~--~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~ 136 (177)
T 2esr_A 78 -----KAENRFTLLKMEAERAID--CLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVC 136 (177)
T ss_dssp -----TCGGGEEEECSCHHHHHH--HBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----CCCCceEEEECcHHHhHH--hhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEE
Confidence 011247889999887422 1236799998753111 134556777776 99999999984
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-12 Score=117.28 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=105.8
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccc
Q 015160 163 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEW 240 (412)
Q Consensus 163 G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~ 240 (412)
...||-.+|.++-+.+..+++ +..+|||+|||+|-+|..++.. +..++|+|+|..|+.+++-.+...
T Consensus 28 STReRLp~ld~fY~~~~~~l~-----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~------ 96 (200)
T 3fzg_A 28 STNERVATLNDFYTYVFGNIK-----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL------ 96 (200)
T ss_dssp HHHTTGGGHHHHHHHHHHHSC-----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS------
T ss_pred CHHHHhHhHHHHHHHHHhhcC-----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 356777888888888888875 4569999999999999999888 779999999999998887443210
Q ss_pred cccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHH
Q 015160 241 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEII 320 (412)
Q Consensus 241 ~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I 320 (412)
....++.+ +|..+.. ..+.||+|+..-.|...++....+..|
T Consensus 97 --------------------------------g~~~~v~~--~d~~~~~----~~~~~DvVLa~k~LHlL~~~~~al~~v 138 (200)
T 3fzg_A 97 --------------------------------KTTIKYRF--LNKESDV----YKGTYDVVFLLKMLPVLKQQDVNILDF 138 (200)
T ss_dssp --------------------------------CCSSEEEE--ECCHHHH----TTSEEEEEEEETCHHHHHHTTCCHHHH
T ss_pred --------------------------------CCCccEEE--ecccccC----CCCCcChhhHhhHHHhhhhhHHHHHHH
Confidence 00112444 5655432 257899999886666555666778899
Q ss_pred HHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHH-HHHHHHhCCCEEEEEe
Q 015160 321 SRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLED-VKRVALHYGFEFEKEK 374 (412)
Q Consensus 321 ~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EE-L~~ll~~~GFeii~e~ 374 (412)
++.|||||++|++. .....|..+ .++=...+ .++.+ .-.+.++.+.
T Consensus 139 ~~~L~pggvfISfp-----tksl~Gr~~--gm~~~Y~~~~~~~~-~~~~~~~~~~ 185 (200)
T 3fzg_A 139 LQLFHTQNFVISFP-----IKSLSGKEK--GMEENYQLWFESFT-KGWIKILDSK 185 (200)
T ss_dssp HHTCEEEEEEEEEE-----CCCCC--CT--TCCCCHHHHHHHHT-TTTSCEEEEE
T ss_pred HHHhCCCCEEEEeC-----hHHhcCCCc--chhhhHHHHHHHhc-cCcceeeeee
Confidence 99999999999863 111112222 34444444 44444 4556666544
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=107.48 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=94.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
|+..+..+...+.. .++.+|||+|||+|.++..+++++..|+|+|+|..|+..++..+...
T Consensus 76 ~~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------- 136 (248)
T 2yvl_A 76 YPKDSFYIALKLNL---NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKF---------------- 136 (248)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHT----------------
T ss_pred cchhHHHHHHhcCC---CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc----------------
Confidence 34444555555532 25679999999999999999999999999999999998776332100
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
....++.+..+|+.+... ..+.||+|+.. .++...+++.+.++|||||++
T Consensus 137 ----------------------~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l 186 (248)
T 2yvl_A 137 ----------------------NLGKNVKFFNVDFKDAEV---PEGIFHAAFVD-----VREPWHYLEKVHKSLMEGAPV 186 (248)
T ss_dssp ----------------------TCCTTEEEECSCTTTSCC---CTTCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEE
T ss_pred ----------------------CCCCcEEEEEcChhhccc---CCCcccEEEEC-----CcCHHHHHHHHHHHcCCCCEE
Confidence 001236778889887541 14689999863 234567899999999999999
Q ss_pred EEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 331 INLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 331 IN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+-..|.. -..+++..++.+. |..++
T Consensus 187 ~~~~~~~----------------~~~~~~~~~l~~~-f~~~~ 211 (248)
T 2yvl_A 187 GFLLPTA----------------NQVIKLLESIENY-FGNLE 211 (248)
T ss_dssp EEEESSH----------------HHHHHHHHHSTTT-EEEEE
T ss_pred EEEeCCH----------------HHHHHHHHHHHhh-CCcce
Confidence 8644321 1234566666665 87655
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.9e-11 Score=112.92 Aligned_cols=155 Identities=8% Similarity=-0.019 Sum_probs=93.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeC-CHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEF-SYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~-S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
++++|...... .++.+|||+|||+|.++..+++.|. .|+|+|+ |..|+..++..... +
T Consensus 67 l~~~l~~~~~~---~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~----N------------- 126 (281)
T 3bzb_A 67 LADTLCWQPEL---IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIRE----H------------- 126 (281)
T ss_dssp HHHHHHHCGGG---TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHT----T-------------
T ss_pred HHHHHHhcchh---cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHH----h-------------
Confidence 45555554321 1456999999999999999999998 8999999 89999877632210 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEeccccc----ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc--
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE----VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK-- 325 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~e----ly~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LK-- 325 (412)
.. ... .+..+ ...++.+...|..+ +... ...++||+|+....+-..+++..+++++.++||
T Consensus 127 ~~-~~~---~~~~~--------~~~~v~~~~~~~~~~~~~~~~~-~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~ 193 (281)
T 3bzb_A 127 TA-NSC---SSETV--------KRASPKVVPYRWGDSPDSLQRC-TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALP 193 (281)
T ss_dssp CC----------------------CCCEEEECCTTSCTHHHHHH-HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCT
T ss_pred hh-hhc---ccccC--------CCCCeEEEEecCCCccHHHHhh-ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhccc
Confidence 00 000 00000 00124555333222 1100 013689999986655556678899999999999
Q ss_pred -C--CcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCC-CEEEEE
Q 015160 326 -D--GGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEKE 373 (412)
Q Consensus 326 -P--GG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~G-Feii~e 373 (412)
| ||+++- +.|.. + .+.-..+++..++++.| |+++..
T Consensus 194 ~p~~gG~l~v~~~~~~----------~--~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 194 ANDPTAVALVTFTHHR----------P--HLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp TTCTTCEEEEEECC--------------------CTHHHHHHHHSTTEEEEEE
T ss_pred CCCCCCEEEEEEEeee----------c--ccchhHHHHHHHHHhcCCEEEEEe
Confidence 9 998653 22210 0 11123467777888999 999875
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.26 E-value=7.2e-12 Score=117.34 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=77.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+.+.+...++ .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-..
T Consensus 74 ~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------------------- 129 (269)
T 1p91_A 74 IVAQLRERLD----DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------------------- 129 (269)
T ss_dssp HHHHHHHHSC----TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhcC----CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--------------------
Confidence 4555555543 14679999999999999999998 889999999999997655110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.++.+..+|+.++.. ..++||+|++.+.. ..++.++++|||||+++
T Consensus 130 ------------------------~~~~~~~~d~~~~~~---~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~ 175 (269)
T 1p91_A 130 ------------------------PQVTFCVASSHRLPF---SDTSMDAIIRIYAP-------CKAEELARVVKPGGWVI 175 (269)
T ss_dssp ------------------------TTSEEEECCTTSCSB---CTTCEEEEEEESCC-------CCHHHHHHHEEEEEEEE
T ss_pred ------------------------CCcEEEEcchhhCCC---CCCceeEEEEeCCh-------hhHHHHHHhcCCCcEEE
Confidence 014677888776532 35789999975431 34899999999999998
Q ss_pred EecC
Q 015160 332 NLGP 335 (412)
Q Consensus 332 N~GP 335 (412)
-..|
T Consensus 176 ~~~~ 179 (269)
T 1p91_A 176 TATP 179 (269)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=107.30 Aligned_cols=104 Identities=19% Similarity=0.121 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+...
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 90 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT--------------------------------- 90 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh---------------------------------
Confidence 456999999999999999999984 8999999999998776332110
Q ss_pred CCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEec-ccCChhhHHHHHHHH--HHhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCF-FIDTAHNIVEYIEII--SRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~F-FIDta~Ni~~yl~~I--~~~LKPGG~wIN 332 (412)
....++.++.+|+.+... .+...++||+|++.. |. ..+..+.++.+ .++|||||+++-
T Consensus 91 -----~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~ 152 (187)
T 2fhp_A 91 -----KEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVC 152 (187)
T ss_dssp -----TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----CCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEE
Confidence 001237889999887431 001146899999763 22 12344566666 889999999984
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=113.44 Aligned_cols=136 Identities=13% Similarity=0.030 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhccccccccc--------ccccccccCCCCC--
Q 015160 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWN--------IYPWIHSNCNSLS-- 254 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~--------I~P~i~~~sn~~s-- 254 (412)
++.+|||+|||+|.++..++++ +..|+|+|+|..|+..|+..+...... ... .|-..-..+...+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPA-GLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHH-HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhc-cccccchhhhhhhhhcccccchhhhh
Confidence 4579999999999999999987 678999999999998887433211000 000 0000000000000
Q ss_pred cccCcc-ccccCCCCCCCCCCCCceeEEecccccccCCC--CCCCCccEEEEec-ccC--C------hhhHHHHHHHHHH
Q 015160 255 DSDQLR-PVSIPDIHPASAGITEGFSMCGGDFVEVYSDP--SQVGAWDAVVTCF-FID--T------AHNIVEYIEIISR 322 (412)
Q Consensus 255 ~~~qlr-~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~--~~~~~fD~VvT~F-FID--t------a~Ni~~yl~~I~~ 322 (412)
...+++ .++... ......+..+|+.+..... ...++||+|++.. |+. . ......+++.+++
T Consensus 130 ~~~~v~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (250)
T 1o9g_A 130 AARRLRERLTAEG-------GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 202 (250)
T ss_dssp HHHHHHHHHHHTT-------SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccc-------cccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHH
Confidence 000000 000000 0000238899988743100 0134899999873 222 1 3556789999999
Q ss_pred hccCCcEEEE
Q 015160 323 ILKDGGVWIN 332 (412)
Q Consensus 323 ~LKPGG~wIN 332 (412)
+|||||+++-
T Consensus 203 ~LkpgG~l~~ 212 (250)
T 1o9g_A 203 ALPAHAVIAV 212 (250)
T ss_dssp HSCTTCEEEE
T ss_pred hcCCCcEEEE
Confidence 9999999984
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=123.35 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=88.3
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhccccccccccc
Q 015160 165 TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIY 243 (412)
Q Consensus 165 ~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~ 243 (412)
..|..+|..-|..-...+ ++..|||+|||+|-|+...|+.|. .|+|+|.|. |+..|+.+... +
T Consensus 65 ~~Rt~aY~~Ai~~~~~~~------~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~----n----- 128 (376)
T 4hc4_A 65 RVRTDAYRLGILRNWAAL------RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRF----N----- 128 (376)
T ss_dssp HHHHHHHHHHHHTTHHHH------TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHH----T-----
T ss_pred HHHHHHHHHHHHhCHHhc------CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHH----c-----
Confidence 456777775553322233 456899999999999999999997 699999995 88777654321 1
Q ss_pred ccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHH
Q 015160 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEII 320 (412)
Q Consensus 244 P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I 320 (412)
...+++.++.||+.++.. .++||+||+- +++.....+..++...
T Consensus 129 -----------------------------~~~~~i~~i~~~~~~~~l----pe~~DvivsE~~~~~l~~e~~l~~~l~a~ 175 (376)
T 4hc4_A 129 -----------------------------GLEDRVHVLPGPVETVEL----PEQVDAIVSEWMGYGLLHESMLSSVLHAR 175 (376)
T ss_dssp -----------------------------TCTTTEEEEESCTTTCCC----SSCEEEEECCCCBTTBTTTCSHHHHHHHH
T ss_pred -----------------------------CCCceEEEEeeeeeeecC----CccccEEEeecccccccccchhhhHHHHH
Confidence 112348899999988754 3789999984 4566666688899999
Q ss_pred HHhccCCcEEE
Q 015160 321 SRILKDGGVWI 331 (412)
Q Consensus 321 ~~~LKPGG~wI 331 (412)
.++|||||++|
T Consensus 176 ~r~Lkp~G~~i 186 (376)
T 4hc4_A 176 TKWLKEGGLLL 186 (376)
T ss_dssp HHHEEEEEEEE
T ss_pred HhhCCCCceEC
Confidence 99999999998
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=119.59 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++|. .|+|+|+|. |+..++..+.. +
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~----~----------------------------- 95 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKS----N----------------------------- 95 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHH----T-----------------------------
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHH----c-----------------------------
Confidence 467999999999999999999987 899999995 87665533211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....++.++.+|+.++.. .++||+|++... .-..+++.+.+..+.++|||||++|
T Consensus 96 -----~l~~~v~~~~~d~~~~~~----~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 96 -----NLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp -----TCTTTEEEEESCTTTCCC----SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -----CCCCcEEEEEcchhhCCC----CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEE
Confidence 011247889999988642 368999998632 2233457788889999999999998
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-10 Score=108.91 Aligned_cols=133 Identities=14% Similarity=0.035 Sum_probs=90.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||+++ ..|+|+|+|..|+..++..+... . + .
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~--~-------------~-----~--------- 86 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELP--D-------------N-----A--------- 86 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSG--G-------------G-----T---------
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhh--h-------------h-----C---------
Confidence 45699999999999999999995 68999999999998776221100 0 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccC----CCCCCCCccEEEEe--cccC----------------ChhhHHHHHHHHHHhc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYS----DPSQVGAWDAVVTC--FFID----------------TAHNIVEYIEIISRIL 324 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~----~~~~~~~fD~VvT~--FFID----------------ta~Ni~~yl~~I~~~L 324 (412)
...+++.++.+|+.++.. .+...++||+|++. |+.. ...++.++++.+.++|
T Consensus 87 ------~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L 160 (260)
T 2ozv_A 87 ------AFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIM 160 (260)
T ss_dssp ------TTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHE
T ss_pred ------CCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHc
Confidence 011247889999988621 00124789999987 4432 1123678999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 325 KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
||||+++-+-| + -..+++..++.+. |...+..
T Consensus 161 kpgG~l~~~~~------------~-----~~~~~~~~~l~~~-~~~~~i~ 192 (260)
T 2ozv_A 161 VSGGQLSLISR------------P-----QSVAEIIAACGSR-FGGLEIT 192 (260)
T ss_dssp EEEEEEEEEEC------------G-----GGHHHHHHHHTTT-EEEEEEE
T ss_pred CCCCEEEEEEc------------H-----HHHHHHHHHHHhc-CCceEEE
Confidence 99999985211 0 1346788888764 7766544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=108.70 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=78.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||+. |..|+|+|+|..|+..++..+...
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 106 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA------------------------------- 106 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4569999999999999999998 889999999999998776332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-C-CCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSD-P-SQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~-~-~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
...+++.+..||+.+.... + ...+.||+|+.... ..+...+++.+.++|||||++|--.++
T Consensus 107 -------~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 107 -------NLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred -------CCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 0112478899998764220 0 01157999975322 345779999999999999999865443
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=124.60 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..+|+. |.. |+|+|+|..|+..|+-......+.... .++.
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~-------------------~Gl~--- 230 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKW-------------------YGKK--- 230 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH-------------------HTBC---
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHH-------------------hCCC---
Confidence 6779999999999999999964 775 999999999998887443211100000 0000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
..++.++.|||.++.. +..-..||+|+...++- .+++.+.|..+++.|||||.+|..
T Consensus 231 --------~~rVefi~GD~~~lp~-~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 231 --------HAEYTLERGDFLSEEW-RERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp --------CCEEEEEECCTTSHHH-HHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred --------CCCeEEEECcccCCcc-ccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEe
Confidence 1248999999998642 10014799998754332 357888999999999999999964
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=109.38 Aligned_cols=101 Identities=15% Similarity=0.003 Sum_probs=73.6
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
+.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+... .
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~--------------------------~------- 101 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL--------------------------K------- 101 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 46899999999999999999986 8999999999998776322100 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHH--hccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR--ILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~--~LKPGG~wIN 332 (412)
. .++.++.+|+.++.. ...++||+|+...-.. ..+..+.++.+.+ +|||||+++-
T Consensus 102 -----~-~~v~~~~~D~~~~~~--~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i 158 (202)
T 2fpo_A 102 -----A-GNARVVNSNAMSFLA--QKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYV 158 (202)
T ss_dssp -----C-CSEEEECSCHHHHHS--SCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----C-CcEEEEECCHHHHHh--hcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEE
Confidence 0 237889999887432 1246899998753211 2345677888865 5999999974
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=109.65 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=81.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..+.... ++.+|||+|||+|..+..||+. +..|+|+|+|..|+..++..+...
T Consensus 55 ~l~~l~~~~------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------- 112 (225)
T 3tr6_A 55 LLALLVKLM------QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA---------------- 112 (225)
T ss_dssp HHHHHHHHH------TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhh------CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 555554433 3469999999999999999998 889999999999998776433210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC-C--CCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-P--SQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~-~--~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPG 327 (412)
...+++.+..+|+.+.... + ...++||+|+... ...+...+++.+.++||||
T Consensus 113 ----------------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~---~~~~~~~~l~~~~~~L~pg 167 (225)
T 3tr6_A 113 ----------------------GLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA---DKANTDLYYEESLKLLREG 167 (225)
T ss_dssp ----------------------TCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEE
T ss_pred ----------------------CCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECC---CHHHHHHHHHHHHHhcCCC
Confidence 0112378899998765320 0 0117899997322 2456788999999999999
Q ss_pred cEEEEe
Q 015160 328 GVWINL 333 (412)
Q Consensus 328 G~wIN~ 333 (412)
|++|--
T Consensus 168 G~lv~~ 173 (225)
T 3tr6_A 168 GLIAVD 173 (225)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 999853
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-10 Score=106.86 Aligned_cols=177 Identities=16% Similarity=0.023 Sum_probs=102.0
Q ss_pred HhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhh
Q 015160 156 VRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 156 ~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn 232 (412)
+|.|..- |. .+-..|...+.....+++.+|||+|||+|.++..||++ .-.|+|+|+|..|+... ++
T Consensus 51 yr~w~~~----~s----kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l---~~ 119 (232)
T 3id6_C 51 YREWNAF----RS----KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVREL---LL 119 (232)
T ss_dssp EEECCTT----TC----HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHH---HH
T ss_pred hhhhchH----HH----HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH---HH
Confidence 7778643 22 13344444443222347789999999999999999986 24899999999996321 11
Q ss_pred cccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh
Q 015160 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN 312 (412)
Q Consensus 233 ~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N 312 (412)
.+.+. .++.++.+|++.........+.||+|++..-. ++
T Consensus 120 ~a~~r--------------------------------------~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~ 158 (232)
T 3id6_C 120 VAQRR--------------------------------------PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PD 158 (232)
T ss_dssp HHHHC--------------------------------------TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TT
T ss_pred Hhhhc--------------------------------------CCeEEEEcccccchhhhccccceEEEEecCCC---hh
Confidence 11110 12667888887642111124689999875432 33
Q ss_pred HHH-HHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccc
Q 015160 313 IVE-YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNR 391 (412)
Q Consensus 313 i~~-yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~ 391 (412)
..+ .++.+.++|||||.++-. .++-.-+....+ -+...+ ....+++.||++++... ..+|..
T Consensus 159 ~~~il~~~~~~~LkpGG~lvis---ik~~~~d~t~~~---~e~~~~-~~~~L~~~gf~~~~~~~-l~p~~~--------- 221 (232)
T 3id6_C 159 QTDIAIYNAKFFLKVNGDMLLV---IKARSIDVTKDP---KEIYKT-EVEKLENSNFETIQIIN-LDPYDK--------- 221 (232)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE---EC-------CCS---SSSTTH-HHHHHHHTTEEEEEEEE-CTTTCS---------
T ss_pred HHHHHHHHHHHhCCCCeEEEEE---EccCCcccCCCH---HHHHHH-HHHHHHHCCCEEEEEec-cCCCcC---------
Confidence 344 345666699999999853 111110001111 123334 44556677999987653 234433
Q ss_pred cceEEEEEEEc
Q 015160 392 YFTAFWTMRKK 402 (412)
Q Consensus 392 Y~~~f~VarK~ 402 (412)
.-.++|++|+
T Consensus 222 -~h~~v~~~~~ 231 (232)
T 3id6_C 222 -DHAIVLSKYK 231 (232)
T ss_dssp -SCEEEEEEEC
T ss_pred -ceEEEEEEeC
Confidence 3456677764
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-11 Score=113.28 Aligned_cols=148 Identities=11% Similarity=0.060 Sum_probs=87.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+...
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------------------- 112 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-------------------------------- 112 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 4569999999999999999987 789999999999998777332110
Q ss_pred CCCCCCCCCCceeEEecccccc-cC-CCCC-CCCccEEEEe--cccCC--h-----hh------HHHHHHHHHHhccCCc
Q 015160 267 IHPASAGITEGFSMCGGDFVEV-YS-DPSQ-VGAWDAVVTC--FFIDT--A-----HN------IVEYIEIISRILKDGG 328 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~el-y~-~~~~-~~~fD~VvT~--FFIDt--a-----~N------i~~yl~~I~~~LKPGG 328 (412)
...+++.++.+|+.+. .. .+.. .++||+|++. |+-.. . .+ ....+..++++|||||
T Consensus 113 ------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG 186 (254)
T 2h00_A 113 ------NLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGG 186 (254)
T ss_dssp ------TCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHT
T ss_pred ------CCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCC
Confidence 0112378888987652 21 1111 2589999987 33211 0 11 1245678899999999
Q ss_pred EEEEecCcch---hhhhccCC-CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 329 VWINLGPLLY---HFADLYGQ-EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 329 ~wIN~GPLly---h~~~~~g~-~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+.-+-+++- .+-...|. .......-+.+++.+++++.||+.++..
T Consensus 187 ~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 187 ELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp HHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEE
Confidence 8753211110 00000010 0001122345899999999999877644
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.6e-11 Score=108.15 Aligned_cols=109 Identities=19% Similarity=0.081 Sum_probs=81.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
.+.+++.+.+.+... ++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++..+..
T Consensus 55 ~~~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~----------------- 114 (231)
T 1vbf_A 55 ALNLGIFMLDELDLH---KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY----------------- 114 (231)
T ss_dssp CHHHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT-----------------
T ss_pred CHHHHHHHHHhcCCC---CCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh-----------------
Confidence 445666666665422 567999999999999999999999999999999999766622210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
.. ++.+..+|+.+... ..++||+|++...+.... +.+.++|||||++
T Consensus 115 -----------------------~~-~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l 161 (231)
T 1vbf_A 115 -----------------------YN-NIKLILGDGTLGYE---EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIM 161 (231)
T ss_dssp -----------------------CS-SEEEEESCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEE
T ss_pred -----------------------cC-CeEEEECCcccccc---cCCCccEEEECCcHHHHH------HHHHHHcCCCcEE
Confidence 00 36788899877322 247899999876555332 4688999999999
Q ss_pred EE
Q 015160 331 IN 332 (412)
Q Consensus 331 IN 332 (412)
|-
T Consensus 162 ~~ 163 (231)
T 1vbf_A 162 IL 163 (231)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=111.16 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=86.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.++..|....+. +++.+|||+|||+|..+..||+. |..|+|+|+|..|+..|+-.+...
T Consensus 43 ~~l~~l~~~~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------- 104 (221)
T 3dr5_A 43 QLLTTLAATTNG---NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA--------------- 104 (221)
T ss_dssp HHHHHHHHHSCC---TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhhCC---CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 466666665432 13459999999999999999985 689999999999998776332210
Q ss_pred CCCCCcccCccccccCCCCCCCCCCC-CceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGIT-EGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~-~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
... .++.+..||+.++... ...++||+|+... ...+..+|++.+.++|||||
T Consensus 105 -----------------------g~~~~~i~~~~gda~~~l~~-~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG 157 (221)
T 3dr5_A 105 -----------------------GYSPSRVRFLLSRPLDVMSR-LANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGG 157 (221)
T ss_dssp -----------------------TCCGGGEEEECSCHHHHGGG-SCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEE
T ss_pred -----------------------CCCcCcEEEEEcCHHHHHHH-hcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCc
Confidence 111 3488999998886421 1147899996432 23457789999999999999
Q ss_pred EEEEecCcchh
Q 015160 329 VWINLGPLLYH 339 (412)
Q Consensus 329 ~wIN~GPLlyh 339 (412)
++|- ..++|+
T Consensus 158 ~lv~-dn~~~~ 167 (221)
T 3dr5_A 158 ALVL-ADALLD 167 (221)
T ss_dssp EEEE-TTTTGG
T ss_pred EEEE-eCCCCC
Confidence 9994 334453
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-10 Score=114.15 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=98.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
...+.+.++.. .+..+|||+|||+|.++..|+++ +..++++|+ +.|+..++ +
T Consensus 191 ~~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~---------------- 244 (368)
T 3reo_A 191 MKKILEMYNGF--EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-------A---------------- 244 (368)
T ss_dssp HHHHHTTCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------C----------------
T ss_pred HHHHHHhcccc--cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-------h----------------
Confidence 34444545421 25679999999999999999996 568999999 87862111 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~w 330 (412)
..++.+..|||.+- . | .+ |+|+..+.+. ..++..+.|++++++|||||++
T Consensus 245 ----------------------~~~v~~~~~d~~~~-~-p--~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l 296 (368)
T 3reo_A 245 ----------------------FSGVEHLGGDMFDG-V-P--KG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKV 296 (368)
T ss_dssp ----------------------CTTEEEEECCTTTC-C-C--CC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEE
T ss_pred ----------------------cCCCEEEecCCCCC-C-C--CC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEE
Confidence 02378999999872 2 2 23 9998877665 4556778999999999999998
Q ss_pred EEecCcchh------------hhh--ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 331 INLGPLLYH------------FAD--LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 331 IN~GPLlyh------------~~~--~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|-...++-. ..+ ..... ....+.+.+|++++++++||++++..
T Consensus 297 ~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~g~~rt~~e~~~ll~~AGF~~v~~~ 353 (368)
T 3reo_A 297 IVAEYILPPSPDPSIATKVVIHTDALMLAYN-PGGKERTEKEFQALAMASGFRGFKVA 353 (368)
T ss_dssp EEEECCCCSSCCCCHHHHHHHHHHHHHHHHS-SBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeccCCCCCCchhhhHHHhhhHHHHhhc-CCCccCCHHHHHHHHHHCCCeeeEEE
Confidence 743221100 000 00000 01346799999999999999998755
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-10 Score=101.49 Aligned_cols=121 Identities=18% Similarity=0.078 Sum_probs=87.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+.. . +
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~---~-----------------------~------ 96 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE---F-----------------------K------ 96 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG---G-----------------------T------
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHH---c-----------------------C------
Confidence 567999999999999999999987 599999999999766622110 0 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
.++.++.+|+.++ . ++||+|++. |+.........+++.+.++| ||+++.. ..
T Consensus 97 --------~~~~~~~~d~~~~-~-----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~------~~---- 150 (207)
T 1wy7_A 97 --------GKFKVFIGDVSEF-N-----SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH------LA---- 150 (207)
T ss_dssp --------TSEEEEESCGGGC-C-----CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE------EC----
T ss_pred --------CCEEEEECchHHc-C-----CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE------eC----
Confidence 0367899998875 1 489999986 33333344568899999999 7777642 00
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
-.-+.+.+.+++.+.||++...
T Consensus 151 ------~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 151 ------KPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEE
T ss_pred ------CcCCHHHHHHHHHHCCCeEEEE
Confidence 0123466778888999988763
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=112.18 Aligned_cols=104 Identities=20% Similarity=0.149 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+|||+|||+|.++..||+++ ..|+|+|+|..|+..++-... +.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~---~~----------------------------- 81 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAH---EE----------------------------- 81 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH---HT-----------------------------
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHH---Hh-----------------------------
Confidence 45699999999999999999984 579999999999976652211 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC---hhhH------HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNI------VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt---a~Ni------~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|+.++.......++||.|+..| -+. .... ..+++.++++|||||+++-
T Consensus 82 -------~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~-~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i 148 (218)
T 3dxy_A 82 -------GLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF-PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHM 148 (218)
T ss_dssp -------TCSSEEEECSCHHHHHHHHSCTTCEEEEEEES-CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCcEEEEECCHHHHHHHHcCCCChheEEEeC-CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEE
Confidence 01237889999888521001258999998664 222 1111 2599999999999999974
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-10 Score=110.09 Aligned_cols=139 Identities=19% Similarity=0.103 Sum_probs=96.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|.++..|+++. -.++..|+ +.|+..++..+..
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~--------------------------------- 224 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF--------------------------------- 224 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---------------------------------
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---------------------------------
Confidence 45689999999999999999994 46677777 6787655522100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcch------
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLY------ 338 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLly------ 338 (412)
...+++++..|||++.. ...+|+|+....|+ ..++..+.|+++++.|||||.+|-+-+++-
T Consensus 225 ------~~~~rv~~~~gD~~~~~-----~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~ 293 (353)
T 4a6d_A 225 ------QEEEQIDFQEGDFFKDP-----LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP 293 (353)
T ss_dssp --------CCSEEEEESCTTTSC-----CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC
T ss_pred ------cccCceeeecCccccCC-----CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC
Confidence 11245899999998632 23579998877664 334567899999999999999885432211
Q ss_pred ---hhhhc--cCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 339 ---HFADL--YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 339 ---h~~~~--~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+-+. .-.. ..-+.|.+|++++++++||++++..
T Consensus 294 ~~~~~~dl~ml~~~--~g~ert~~e~~~ll~~AGf~~v~v~ 332 (353)
T 4a6d_A 294 LLTQLYSLNMLVQT--EGQERTPTHYHMLLSSAGFRDFQFK 332 (353)
T ss_dssp HHHHHHHHHHHHSS--SCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHhC--CCcCCCHHHHHHHHHHCCCceEEEE
Confidence 11010 0000 1346799999999999999998765
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-10 Score=112.66 Aligned_cols=145 Identities=16% Similarity=0.205 Sum_probs=99.2
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
...+.+.++.. .+..+|||+|||+|.++..|+++ +..++++|+ +.|+..++ +
T Consensus 189 ~~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~---------------- 242 (364)
T 3p9c_A 189 TKKLLELYHGF--EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-------Q---------------- 242 (364)
T ss_dssp HHHHHHHCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------C----------------
T ss_pred HHHHHHhcccc--cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-------h----------------
Confidence 34444555422 25679999999999999999986 568999999 77762111 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~w 330 (412)
..++.+..|||.+ .. | .+ |+|+..+.+. ..++....|++++++|||||++
T Consensus 243 ----------------------~~~v~~~~~D~~~-~~-p--~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 294 (364)
T 3p9c_A 243 ----------------------FPGVTHVGGDMFK-EV-P--SG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKV 294 (364)
T ss_dssp ----------------------CTTEEEEECCTTT-CC-C--CC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred ----------------------cCCeEEEeCCcCC-CC-C--CC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 0237899999987 22 2 23 9999877665 4466789999999999999999
Q ss_pred EEecCcc---------hh---hhh--ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 331 INLGPLL---------YH---FAD--LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 331 IN~GPLl---------yh---~~~--~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+-...++ +. ..+ ... ......+.+.+|++++++++||++++..
T Consensus 295 ~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 351 (364)
T 3p9c_A 295 VLVQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARGAGFTGVKST 351 (364)
T ss_dssp EEEECCBCSSCCSSHHHHHHHHHHHHHHH-HCSSCCCCBHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeccCCCCCcchhhhhHHHhHHHHHh-cccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 7432211 00 000 000 0001346799999999999999998855
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-10 Score=103.59 Aligned_cols=152 Identities=14% Similarity=0.028 Sum_probs=95.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+++.++++ ... +++.+|||+|||+|.++..+|+++..|+|+|+|..+.
T Consensus 12 KL~ei~~~~-~~~--~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~---------------------------- 60 (191)
T 3dou_A 12 KLEFLLDRY-RVV--RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE---------------------------- 60 (191)
T ss_dssp HHHHHHHHH-CCS--CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC----------------------------
T ss_pred HHHHHHHHc-CCC--CCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc----------------------------
Confidence 355555543 211 2567999999999999999999999999999996210
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCC-----CC---CCCccEEEEecccCC-----------hhhH
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP-----SQ---VGAWDAVVTCFFIDT-----------AHNI 313 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~-----~~---~~~fD~VvT~FFIDt-----------a~Ni 313 (412)
+ .++.+++||+++..... .. .++||+|++....++ ...+
T Consensus 61 -----------~-----------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~ 118 (191)
T 3dou_A 61 -----------I-----------AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIG 118 (191)
T ss_dssp -----------C-----------TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHH
T ss_pred -----------C-----------CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHH
Confidence 0 12678899988742100 00 148999998532211 1123
Q ss_pred HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccc
Q 015160 314 VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYF 393 (412)
Q Consensus 314 ~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~ 393 (412)
...++.+.++|||||.+|-. .| . .-...++...++. .|+-++.....++-. ...
T Consensus 119 ~~~l~~a~~~LkpGG~lv~k---~~--~-----------~~~~~~~~~~l~~-~F~~v~~~kP~asR~---------~s~ 172 (191)
T 3dou_A 119 QRVMEIAVRYLRNGGNVLLK---QF--Q-----------GDMTNDFIAIWRK-NFSSYKISKPPASRG---------SSS 172 (191)
T ss_dssp HHHHHHHHHHEEEEEEEEEE---EE--C-----------STHHHHHHHHHGG-GEEEEEEECC---------------CC
T ss_pred HHHHHHHHHHccCCCEEEEE---Ec--C-----------CCCHHHHHHHHHH-hcCEEEEECCCCccC---------CCc
Confidence 46788889999999999841 11 1 0124677777755 588776543222221 235
Q ss_pred eEEEEEEEcC
Q 015160 394 TAFWTMRKKS 403 (412)
Q Consensus 394 ~~f~VarK~~ 403 (412)
-.|+||++..
T Consensus 173 E~y~v~~~~~ 182 (191)
T 3dou_A 173 EIYIMFFGFK 182 (191)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEeeec
Confidence 6888998763
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-10 Score=111.34 Aligned_cols=138 Identities=11% Similarity=0.123 Sum_probs=92.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|||+|.++..|+++. ..++++|++. |+. + . ... .
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~-----~-~~~----------------------~----- 227 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--R-----H-RLD----------------------A----- 227 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--T-----C-CCC----------------------C-----
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--c-----c-ccc----------------------c-----
Confidence 56799999999999999999964 5688999954 432 1 0 000 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEEecCcchh-----
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLGPLLYH----- 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wIN~GPLlyh----- 339 (412)
.....++.+..+||.+. . . .||+|+....+....+ ....|++++++|||||++|-..+..-.
T Consensus 228 -----~~~~~~v~~~~~d~~~~--~---p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~ 296 (348)
T 3lst_A 228 -----PDVAGRWKVVEGDFLRE--V---P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH 296 (348)
T ss_dssp -----GGGTTSEEEEECCTTTC--C---C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC
T ss_pred -----cCCCCCeEEEecCCCCC--C---C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc
Confidence 01123589999999732 1 2 8999998876654333 479999999999999999853221100
Q ss_pred ---hhhc--cCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 340 ---FADL--YGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 340 ---~~~~--~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
+.+. ... ....+.+.+|++++++++||++++...
T Consensus 297 ~~~~~d~~~~~~--~~~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 297 QSKEMDFMMLAA--RTGQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHHHHHHHHT--TSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhcChhhhhc--CCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 0000 000 012367999999999999999987653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.8e-10 Score=112.10 Aligned_cols=141 Identities=13% Similarity=0.220 Sum_probs=97.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||||||+|.++.++|+.|. .|+|+|+|..|+..|+..+...
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~-------------------------------- 264 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA-------------------------------- 264 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 456899999999999999999998 8999999999998777332110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--c--cC---ChhhH-HHHHHHHHHhccCCcEEEEecCcch
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--F--ID---TAHNI-VEYIEIISRILKDGGVWINLGPLLY 338 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F--F--ID---ta~Ni-~~yl~~I~~~LKPGG~wIN~GPLly 338 (412)
....++.+..+|+.++.. ..++||+|++.. - +. ...++ .++++.+.++| +|+.++-
T Consensus 265 ------gl~~~i~~~~~D~~~~~~---~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i------ 328 (373)
T 3tm4_A 265 ------GVLDKIKFIQGDATQLSQ---YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI------ 328 (373)
T ss_dssp ------TCGGGCEEEECCGGGGGG---TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE------
T ss_pred ------CCCCceEEEECChhhCCc---ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE------
Confidence 011247889999998753 247899999863 2 21 22333 56788899988 3333331
Q ss_pred hhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 015160 339 HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 339 h~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
.-+.+.+++++.+.||++.+...+ ..+.-.|.+++.+.+
T Consensus 329 --------------~~~~~~~~~~~~~~G~~~~~~~~~-----------~nG~l~~~~~~~~~~ 367 (373)
T 3tm4_A 329 --------------TTEKKAIEEAIAENGFEIIHHRVI-----------GHGGLMVHLYVVKLE 367 (373)
T ss_dssp --------------ESCHHHHHHHHHHTTEEEEEEEEE-----------EETTEEEEEEEEEET
T ss_pred --------------ECCHHHHHHHHHHcCCEEEEEEEE-----------EcCCEEEEEEeccCc
Confidence 125677888999999999876532 223335666665544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-11 Score=106.55 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||+. |..|+|+|+|..|+..++-.+...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 104 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN------------------------------- 104 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-------------------------------
Confidence 3468999999999999999988 789999999999998776332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.+..+|+.++.. ...+ ||+|+...- ..+...+++.+.++|||||++|-
T Consensus 105 -------~~~~~v~~~~~d~~~~~~--~~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~ 158 (210)
T 3c3p_A 105 -------GLIDRVELQVGDPLGIAA--GQRD-IDILFMDCD---VFNGADVLERMNRCLAKNALLIA 158 (210)
T ss_dssp -------SGGGGEEEEESCHHHHHT--TCCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEE
T ss_pred -------CCCceEEEEEecHHHHhc--cCCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEE
Confidence 001237889999877532 1235 999976532 34577899999999999999985
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-10 Score=106.33 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=101.0
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
|+.|.++++ ++.+|||+|||+|.++..||++|. .|+|+|+|..|+..|+--+.. +
T Consensus 12 L~~i~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~----~-------------- 68 (230)
T 3lec_A 12 LQKVANYVP-----KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE----H-------------- 68 (230)
T ss_dssp HHHHHTTSC-----TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 455666665 457999999999999999999985 599999999999887732211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
...+++.+..||..+... ..+.||+|+.+--. +.-+.+.++.....|+++|.+|-
T Consensus 69 --------------------gl~~~I~~~~gD~l~~~~---~~~~~D~IviaGmG--g~lI~~IL~~~~~~l~~~~~lIl 123 (230)
T 3lec_A 69 --------------------GLTSKIDVRLANGLSAFE---EADNIDTITICGMG--GRLIADILNNDIDKLQHVKTLVL 123 (230)
T ss_dssp --------------------TCTTTEEEEECSGGGGCC---GGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEE
T ss_pred --------------------CCCCcEEEEECchhhccc---cccccCEEEEeCCc--hHHHHHHHHHHHHHhCcCCEEEE
Confidence 112348899999887643 12479998754322 23477889999999999999984
Q ss_pred ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 333 ~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
- | ....++|++.+.+.||+++.|..
T Consensus 124 q-p-----------------~~~~~~lr~~L~~~Gf~i~~E~l 148 (230)
T 3lec_A 124 Q-P-----------------NNREDDLRKWLAANDFEIVAEDI 148 (230)
T ss_dssp E-E-----------------SSCHHHHHHHHHHTTEEEEEEEE
T ss_pred E-C-----------------CCChHHHHHHHHHCCCEEEEEEE
Confidence 1 1 13488999999999999999873
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-11 Score=116.92 Aligned_cols=100 Identities=11% Similarity=-0.018 Sum_probs=68.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..+|++ ..|+|+|+|+ |+..++ +. +. +.
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~-------~~-----------------------~~--~~-- 125 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGH-------EK-----------------------PR--LV-- 125 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTS-------CC-----------------------CC--CC--
T ss_pred CCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhh-------hc-----------------------hh--hh--
Confidence 5679999999999999999999 6899999998 742110 00 00 00
Q ss_pred CCCCCCCCceeEE--ecccccccCCCCCCCCccEEEEecc-cCChh--h---HHHHHHHHHHhccCCc--EEEE
Q 015160 269 PASAGITEGFSMC--GGDFVEVYSDPSQVGAWDAVVTCFF-IDTAH--N---IVEYIEIISRILKDGG--VWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~--~GDF~ely~~~~~~~~fD~VvT~FF-IDta~--N---i~~yl~~I~~~LKPGG--~wIN 332 (412)
.....++.++ .+|+.++. .++||+|++.+- +.... + ....|+.+.++||||| .||-
T Consensus 126 ---~~~~~~v~~~~~~~D~~~l~-----~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 126 ---ETFGWNLITFKSKVDVTKME-----PFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp ---CCTTGGGEEEECSCCGGGCC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred ---hhcCCCeEEEeccCcHhhCC-----CCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 0011247788 99998753 378999998642 21111 1 1137899999999999 8874
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-10 Score=105.16 Aligned_cols=134 Identities=14% Similarity=0.087 Sum_probs=99.4
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
|+.|.++++ ++.+|||+|||+|.++..+|+.|- .|+|+|++..++..|+--+.. +
T Consensus 6 L~~l~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~----~-------------- 62 (225)
T 3kr9_A 6 LELVASFVS-----QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA----H-------------- 62 (225)
T ss_dssp HHHHHTTSC-----TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 455666665 456999999999999999999985 699999999999877732211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
...+++.+..+|.++... ..+.||+|+.+-- -..-+.+.|+.....|+|||++|-
T Consensus 63 --------------------gl~~~i~~~~~d~l~~l~---~~~~~D~IviaG~--Gg~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 63 --------------------GLKEKIQVRLANGLAAFE---ETDQVSVITIAGM--GGRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp --------------------TCTTTEEEEECSGGGGCC---GGGCCCEEEEEEE--CHHHHHHHHHHTGGGCTTCCEEEE
T ss_pred --------------------CCCceEEEEECchhhhcc---cCcCCCEEEEcCC--ChHHHHHHHHHHHHHhCCCCEEEE
Confidence 111247889999876432 1236999886532 223367889999999999999984
Q ss_pred ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-| . ...+.+++.+.+.||+++.|.
T Consensus 118 -q~----------------~-~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 118 -QP----------------N-NREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp -EE----------------S-SCHHHHHHHHHHTTEEEEEEE
T ss_pred -EC----------------C-CCHHHHHHHHHHCCCEEEEEE
Confidence 11 1 367899999999999999986
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-10 Score=111.50 Aligned_cols=133 Identities=13% Similarity=0.010 Sum_probs=91.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..+|+.|..|+|+|+|..|+..++..+.. + .
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~----~----------------------g------- 199 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL----A----------------------G------- 199 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH----H----------------------T-------
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 456999999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCC-ceeEEecccccccCC-CCCCCCccEEEEe---cccC-------ChhhHHHHHHHHHHhccCCcEEEE-ecC
Q 015160 269 PASAGITE-GFSMCGGDFVEVYSD-PSQVGAWDAVVTC---FFID-------TAHNIVEYIEIISRILKDGGVWIN-LGP 335 (412)
Q Consensus 269 p~~~~~~~-~~s~~~GDF~ely~~-~~~~~~fD~VvT~---FFID-------ta~Ni~~yl~~I~~~LKPGG~wIN-~GP 335 (412)
..+ ++.++.+|+.++... ....++||+|+.. |-.. ...+..++++.+.++|||||+++- ...
T Consensus 200 -----l~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 200 -----LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp -----CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred -----CCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 011 267889998875320 0013689999884 2221 234567889999999999999653 111
Q ss_pred cchhhhhccCCCCCcccCCCHHHHHHHHH----hCCCEEEEEe
Q 015160 336 LLYHFADLYGQEDEMSIELSLEDVKRVAL----HYGFEFEKEK 374 (412)
Q Consensus 336 Llyh~~~~~g~~~~~~ieLS~EEL~~ll~----~~GFeii~e~ 374 (412)
...++.+++..++. +.|+++....
T Consensus 275 ---------------~~~~~~~~~~~~l~~a~~~~g~~v~~~e 302 (332)
T 2igt_A 275 ---------------SIRASFYSMHELMRETMRGAGGVVASGE 302 (332)
T ss_dssp ---------------CTTSCHHHHHHHHHHHTTTSCSEEEEEE
T ss_pred ---------------CCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 12345555555555 7899987543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-11 Score=111.51 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+-.+....... .
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~-----------------~---------- 98 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAP-----------------A---------- 98 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHST-----------------T----------
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHH-----------------h----------
Confidence 4568999999999999999998 5789999999999987763322110000 0
Q ss_pred CCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEecccCChh----h-----HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTAH----N-----IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~e-ly~~~~~~~~fD~VvT~FFIDta~----N-----i~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|+.+ +.. ....++||.|+.+| -|.-. . ...+|+.++++|||||+++-
T Consensus 99 ------~~~~nv~~~~~d~~~~l~~-~~~~~~~D~v~~~~-~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~ 166 (235)
T 3ckk_A 99 ------GGFQNIACLRSNAMKHLPN-FFYKGQLTKMFFLF-PDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166 (235)
T ss_dssp ------CCCTTEEEEECCTTTCHHH-HCCTTCEEEEEEES-CC-----------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCeEEEEECcHHHhhhh-hCCCcCeeEEEEeC-CCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE
Confidence 001247899999886 320 01257899997654 33210 0 13799999999999999984
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=104.33 Aligned_cols=110 Identities=18% Similarity=0.091 Sum_probs=79.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
+.++..+.+.+.. .++.+|||+|||+|.++..|++.+ ..|+|+|+|..|+..++-.+...
T Consensus 63 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------- 125 (215)
T 2yxe_A 63 IHMVGMMCELLDL---KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL-------------- 125 (215)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhhCC---CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------
Confidence 3455555555532 256799999999999999999987 79999999999997766332110
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
. ..++.+..+|+.+... ..++||+|+....+.... +.+.++|||||
T Consensus 126 ------------~-------------~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG 171 (215)
T 2yxe_A 126 ------------G-------------YDNVIVIVGDGTLGYE---PLAPYDRIYTTAAGPKIP------EPLIRQLKDGG 171 (215)
T ss_dssp ------------T-------------CTTEEEEESCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEE
T ss_pred ------------C-------------CCCeEEEECCcccCCC---CCCCeeEEEECCchHHHH------HHHHHHcCCCc
Confidence 0 0126778888755322 246899999887655433 48899999999
Q ss_pred EEEE
Q 015160 329 VWIN 332 (412)
Q Consensus 329 ~wIN 332 (412)
++|-
T Consensus 172 ~lv~ 175 (215)
T 2yxe_A 172 KLLM 175 (215)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.8e-11 Score=116.44 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=82.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
....|.+.++.. .+.+|||+|||+|.++..++++| ..|+|+|+|..|+..++-.+.. +
T Consensus 184 ~~~~ll~~l~~~---~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~----~------------- 243 (343)
T 2pjd_A 184 GSQLLLSTLTPH---TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA----N------------- 243 (343)
T ss_dssp HHHHHHHHSCTT---CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH----T-------------
T ss_pred HHHHHHHhcCcC---CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----h-------------
Confidence 345555555322 34689999999999999999998 5899999999999877632210 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-----ChhhHHHHHHHHHHhccC
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-----TAHNIVEYIEIISRILKD 326 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID-----ta~Ni~~yl~~I~~~LKP 326 (412)
.+ ...+..+|+.+.. .++||+|++..-+. ...+..++++.++++|||
T Consensus 244 ---------~~--------------~~~~~~~d~~~~~-----~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp 295 (343)
T 2pjd_A 244 ---------GV--------------EGEVFASNVFSEV-----KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS 295 (343)
T ss_dssp ---------TC--------------CCEEEECSTTTTC-----CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE
T ss_pred ---------CC--------------CCEEEEccccccc-----cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCC
Confidence 00 1345778887632 47899999875333 345578899999999999
Q ss_pred CcEEEEecC
Q 015160 327 GGVWINLGP 335 (412)
Q Consensus 327 GG~wIN~GP 335 (412)
||+++-..+
T Consensus 296 gG~l~i~~~ 304 (343)
T 2pjd_A 296 GGELRIVAN 304 (343)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEc
Confidence 999986443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=113.06 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=93.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++ . .
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------------------------~--~-- 230 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS--------------------------------G--S-- 230 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--------------------------------C--B--
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcc--------------------------------c--C--
Confidence 4569999999999999999987 678999999 88873111 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccC---CcEEEEecCcch---
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKD---GGVWINLGPLLY--- 338 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKP---GG~wIN~GPLly--- 338 (412)
.++.+..+||.+ .. | .||+|+..+.+....+ ..+.|+.++++||| ||++|-..+..-
T Consensus 231 ---------~~v~~~~~d~~~-~~-p----~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~ 295 (352)
T 1fp2_A 231 ---------NNLTYVGGDMFT-SI-P----NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295 (352)
T ss_dssp ---------TTEEEEECCTTT-CC-C----CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTT
T ss_pred ---------CCcEEEeccccC-CC-C----CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCC
Confidence 127889999976 22 2 3999998876654433 44999999999999 999874322110
Q ss_pred ------hh---hhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 339 ------HF---ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 339 ------h~---~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.. .+..-... ...+.+.+|++++++++||++++..
T Consensus 296 ~~~~~~~~~~~~d~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~ 339 (352)
T 1fp2_A 296 DENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKIS 339 (352)
T ss_dssp SCHHHHHHHHHHHHHGGGG-TCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred CccchhhhHhhccHHHHhc-cCCCCCHHHHHHHHHHCCCCeeEEE
Confidence 00 00000000 0235789999999999999988754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=120.28 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=84.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
..++..+.+.+... ++.+|||+|||+|+++..||++ |. .|+|+|+|..|+..|.-++..+.+...
T Consensus 228 p~~v~~ml~~l~l~---~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~---------- 294 (433)
T 1u2z_A 228 PNFLSDVYQQCQLK---KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK---------- 294 (433)
T ss_dssp HHHHHHHHHHTTCC---TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhcCCC---CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHH----------
Confidence 45666666665422 5679999999999999999996 64 699999999999887433332211100
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecc-cccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGD-FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GD-F~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
..++. ..++.+..|| +.+....+...+.||+|+...++ ..+++.+.|+.+.++|||||
T Consensus 295 ---------~~Gl~-----------~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG 353 (433)
T 1u2z_A 295 ---------LYGMR-----------LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGC 353 (433)
T ss_dssp ---------HTTBC-----------CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTC
T ss_pred ---------HcCCC-----------CCceEEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCe
Confidence 00000 1246777764 43210000013689999976544 23678899999999999999
Q ss_pred EEEEe
Q 015160 329 VWINL 333 (412)
Q Consensus 329 ~wIN~ 333 (412)
.+|..
T Consensus 354 ~lVi~ 358 (433)
T 1u2z_A 354 KIISL 358 (433)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 99964
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=114.44 Aligned_cols=145 Identities=16% Similarity=0.135 Sum_probs=96.5
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
..+.+.++.. .+..+|||+|||+|+++..|++++ ..++++|+ ..|+..++
T Consensus 198 ~~l~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~------------------------- 249 (372)
T 1fp1_D 198 KRMLEIYTGF--EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP------------------------- 249 (372)
T ss_dssp HHHHHHCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------------------------
T ss_pred HHHHHHhhcc--CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh-------------------------
Confidence 4444455421 245799999999999999999986 46778899 88863111
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEE
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wI 331 (412)
. . .++.+..+||.+ .. | . ||+|+....|....+ ....|+.++++|||||++|
T Consensus 250 -------~--~-----------~~v~~~~~d~~~-~~-~---~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~ 303 (372)
T 1fp1_D 250 -------P--L-----------SGIEHVGGDMFA-SV-P---Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 303 (372)
T ss_dssp -------C--C-----------TTEEEEECCTTT-CC-C---C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -------h--c-----------CCCEEEeCCccc-CC-C---C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 0 0 127889999987 22 2 2 999998876654433 4499999999999999998
Q ss_pred EecCcc----h-------h-hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLL----Y-------H-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLl----y-------h-~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-..+.. . . ..+..-.......+.+.+|++++++++||++++..
T Consensus 304 i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 358 (372)
T 1fp1_D 304 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 358 (372)
T ss_dssp EEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred EEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEE
Confidence 431110 0 0 00000000000235699999999999999998755
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=107.05 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..++-.+...
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 101 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL-------------------------------- 101 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 4569999999999999999998 689999999999998776332110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.+..+|+.+........+.||+|+...-.. +...+++.+.++|||||++|-
T Consensus 102 ------~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~ 158 (233)
T 2gpy_A 102 ------GLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILS 158 (233)
T ss_dssp ------TCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEE
T ss_pred ------CCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEE
Confidence 011237788899877421000136899998765443 577999999999999999985
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=109.79 Aligned_cols=140 Identities=16% Similarity=0.083 Sum_probs=96.4
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
.|...+..+...+.. .++.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++..+.... .
T Consensus 83 ~~~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--g-------- 149 (280)
T 1i9g_A 83 IYPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY--G-------- 149 (280)
T ss_dssp CCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH--T--------
T ss_pred ecHHHHHHHHHHcCC---CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc--C--------
Confidence 566666766666542 25679999999999999999996 6899999999999977663221000 0
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
....++.+..+|+.+... ..+.||+|+... .+..++++.+.++|||
T Consensus 150 --------------------------~~~~~v~~~~~d~~~~~~---~~~~~D~v~~~~-----~~~~~~l~~~~~~L~p 195 (280)
T 1i9g_A 150 --------------------------QPPDNWRLVVSDLADSEL---PDGSVDRAVLDM-----LAPWEVLDAVSRLLVA 195 (280)
T ss_dssp --------------------------SCCTTEEEECSCGGGCCC---CTTCEEEEEEES-----SCGGGGHHHHHHHEEE
T ss_pred --------------------------CCCCcEEEEECchHhcCC---CCCceeEEEECC-----cCHHHHHHHHHHhCCC
Confidence 001237788899887632 247899998732 2445789999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHh-CCCEEEE
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 372 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~-~GFeii~ 372 (412)
||+++-..|..- ...++...+.+ .||..++
T Consensus 196 gG~l~~~~~~~~----------------~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 196 GGVLMVYVATVT----------------QLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp EEEEEEEESSHH----------------HHHHHHHHHHHHSSBCCCE
T ss_pred CCEEEEEeCCHH----------------HHHHHHHHHHhcCCcCCcE
Confidence 999986544210 12345555555 7887655
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=121.08 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=75.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|+.|. .|+|+|+|. |+..|+..+.. +
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~----~----------------------------- 203 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKS----N----------------------------- 203 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHH----c-----------------------------
Confidence 457999999999999999999986 899999998 98766533211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....++.++.+|+.++.. .++||+|++.. +....++..+.+..++++|||||++|
T Consensus 204 -----gl~~~v~~~~~d~~~~~~----~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 204 -----NLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp -----TCTTTEEEEESCTTTCCC----SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred -----CCCCcEEEEECchhhCcc----CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 011347899999988532 36899999853 33333456778888999999999998
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=114.42 Aligned_cols=117 Identities=12% Similarity=-0.009 Sum_probs=82.2
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
...|.+.++.. ++.+|||+|||+|.++..++++ |..|+|+|+|..|+..++..+.. +
T Consensus 211 ~~~ll~~l~~~---~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~----n-------------- 269 (375)
T 4dcm_A 211 ARFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----N-------------- 269 (375)
T ss_dssp HHHHHHTCCCS---CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH----H--------------
T ss_pred HHHHHHhCccc---CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHH----c--------------
Confidence 34455555533 4579999999999999999999 68999999999999877633211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC----C-hhhHHHHHHHHHHhccCC
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID----T-AHNIVEYIEIISRILKDG 327 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID----t-a~Ni~~yl~~I~~~LKPG 327 (412)
++ ++ ..++.+..+|+.+.. ..++||+|++..-+. . .....++|+.++++||||
T Consensus 270 --------gl--~~--------~~~v~~~~~D~~~~~----~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg 327 (375)
T 4dcm_A 270 --------MP--EA--------LDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 327 (375)
T ss_dssp --------CG--GG--------GGGEEEEECSTTTTC----CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred --------CC--Cc--------CceEEEEechhhccC----CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence 00 00 013678999988743 257899999863211 1 122447899999999999
Q ss_pred cEEEEec
Q 015160 328 GVWINLG 334 (412)
Q Consensus 328 G~wIN~G 334 (412)
|+++-++
T Consensus 328 G~l~iv~ 334 (375)
T 4dcm_A 328 GELYIVA 334 (375)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9998644
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-09 Score=98.38 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=80.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+++.|. .|+|+|+|..|+..++..+.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----------------------------------- 95 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----------------------------------- 95 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------------------------------
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------------------------------
Confidence 457999999999999999999998 59999999999976652110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
++.++.+|+.++ + ++||+|++.- +.-......++++.+.++| |++++...|
T Consensus 96 ---------~~~~~~~d~~~~---~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~---------- 148 (200)
T 1ne2_A 96 ---------GVNFMVADVSEI---S---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNA---------- 148 (200)
T ss_dssp ---------TSEEEECCGGGC---C---CCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEEEG----------
T ss_pred ---------CCEEEECcHHHC---C---CCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEcC----------
Confidence 257888998874 1 6899999863 2211122357899999999 666654211
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
-+.+.+.+++...| ++..
T Consensus 149 --------~~~~~~~~~~~~~g-~~~~ 166 (200)
T 1ne2_A 149 --------KARDFLRREFSARG-DVFR 166 (200)
T ss_dssp --------GGHHHHHHHHHHHE-EEEE
T ss_pred --------chHHHHHHHHHHCC-CEEE
Confidence 12456788888888 6655
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=101.86 Aligned_cols=46 Identities=13% Similarity=-0.080 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCH
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSY 221 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~ 221 (412)
.+++.++++ .-. +++.+|||+|||+|.++..|+++ +..|+|+|+|.
T Consensus 9 kl~~~~~~~-~~~--~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 9 KLIELDNKY-LFL--KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp HHHHHHHHH-CCC--CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHHHHHHc-CCC--CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 455555543 211 14579999999999999999987 47899999998
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=108.43 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=81.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..|.... +..+|||+|||+|..+..||+. |..|+|+|+|..|+..++-.+...
T Consensus 70 ll~~l~~~~------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------------- 127 (247)
T 1sui_A 70 FLSMLLKLI------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA---------------- 127 (247)
T ss_dssp HHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhh------CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 3459999999999999999987 789999999999998776332110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CC-C--CCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DP-S--QVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-~~-~--~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
....++.++.||..++.. .. . ..++||+|+.... ..+...|++.+.++|||
T Consensus 128 ----------------------g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~Lkp 182 (247)
T 1sui_A 128 ----------------------GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKV 182 (247)
T ss_dssp ----------------------TCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCT
T ss_pred ----------------------CCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCC
Confidence 011247889999876421 00 0 0378999975422 34678999999999999
Q ss_pred CcEEEE
Q 015160 327 GGVWIN 332 (412)
Q Consensus 327 GG~wIN 332 (412)
||++|-
T Consensus 183 GG~lv~ 188 (247)
T 1sui_A 183 GGVIGY 188 (247)
T ss_dssp TCCEEE
T ss_pred CeEEEE
Confidence 999984
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-09 Score=105.26 Aligned_cols=134 Identities=14% Similarity=0.063 Sum_probs=99.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
++.|.++++ ++.+|||+|||+|.++..||+.|- .|+|+|++..|+..|+--+.. +
T Consensus 12 L~~i~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~----~-------------- 68 (244)
T 3gnl_A 12 LEKVASYIT-----KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS----S-------------- 68 (244)
T ss_dssp HHHHHTTCC-----SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 455666665 457999999999999999999985 699999999999877732211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
...+++.+..||..+... ..+.||+|+.+--. ..-+.+.|+.....|+++|.+|-
T Consensus 69 --------------------gl~~~I~v~~gD~l~~~~---~~~~~D~IviagmG--g~lI~~IL~~~~~~L~~~~~lIl 123 (244)
T 3gnl_A 69 --------------------GLTEQIDVRKGNGLAVIE---KKDAIDTIVIAGMG--GTLIRTILEEGAAKLAGVTKLIL 123 (244)
T ss_dssp --------------------TCTTTEEEEECSGGGGCC---GGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEE
T ss_pred --------------------CCCceEEEEecchhhccC---ccccccEEEEeCCc--hHHHHHHHHHHHHHhCCCCEEEE
Confidence 111247889999887643 12369998864221 23477889999999999999984
Q ss_pred ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
- | ....+++++.+.+.||.++.|.
T Consensus 124 q-~-----------------~~~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 124 Q-P-----------------NIAAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp E-E-----------------SSCHHHHHHHHHHHTEEEEEEE
T ss_pred E-c-----------------CCChHHHHHHHHHCCCEEEEEE
Confidence 1 1 1357899999999999998876
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-10 Score=103.75 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||+. +..|+|+|+|..|+..|+-.+...
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------------------------------- 120 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA------------------------------- 120 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 3458999999999999999987 679999999999998776332210
Q ss_pred CCCCCCCCCCCceeEEecccccccC-CCCCC--CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS-DPSQV--GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~-~~~~~--~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.+..+|+.+... .+... ++||+|+... ...+...+++.+.++|||||++|-
T Consensus 121 -------g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpgG~lv~ 180 (232)
T 3cbg_A 121 -------GVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDA---DKRNYPRYYEIGLNLLRRGGLMVI 180 (232)
T ss_dssp -------TCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECS---CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -------CCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECC---CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 001237788888765321 11112 6899997432 235678999999999999999985
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.3e-11 Score=110.73 Aligned_cols=122 Identities=11% Similarity=0.071 Sum_probs=85.1
Q ss_pred CCeEEEecCCCChhHHHHHHc------CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccc
Q 015160 190 PPACLVPGAGLGRLALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~ 263 (412)
+.+|||+|||+|..+..||++ +..|+|+|+|..|+..|+ ..
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~--------------------------------~~- 128 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--------------------------------SD- 128 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--------------------------------GG-
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh--------------------------------cc-
Confidence 459999999999999999997 789999999999963211 00
Q ss_pred cCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCChhhHHHHHHHHHH-hccCCcEEEEecCcchhh
Q 015160 264 IPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR-ILKDGGVWINLGPLLYHF 340 (412)
Q Consensus 264 iPDv~p~~~~~~~~~s~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~-~LKPGG~wIN~GPLlyh~ 340 (412)
..++.++.||+.++ ... ....+||+|+.... . .++..+|+.+++ +|||||++|-... ..+
T Consensus 129 -----------~~~v~~~~gD~~~~~~l~~-~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~--~~~ 191 (236)
T 2bm8_A 129 -----------MENITLHQGDCSDLTTFEH-LREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIEDM--IPY 191 (236)
T ss_dssp -----------CTTEEEEECCSSCSGGGGG-GSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECSC--HHH
T ss_pred -----------CCceEEEECcchhHHHHHh-hccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEeC--ccc
Confidence 12378899998874 110 01237999875432 1 267889999997 9999999985221 111
Q ss_pred hhccCCCCCcccCCCHHHHHHHHHhC--CCEEE
Q 015160 341 ADLYGQEDEMSIELSLEDVKRVALHY--GFEFE 371 (412)
Q Consensus 341 ~~~~g~~~~~~ieLS~EEL~~ll~~~--GFeii 371 (412)
. .....+++.++++.. +|+++
T Consensus 192 ~----------~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 192 W----------YRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp H----------HHHCHHHHHHHHHTTTTTEEEE
T ss_pred c----------cccCHHHHHHHHHhCcccEEEc
Confidence 0 012345888888877 68875
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.3e-11 Score=111.55 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||+. |..|+|+|+|..|+..|+-.+...
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------------------------------- 108 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA------------------------------- 108 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-------------------------------
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 3469999999999999999984 789999999999975444221100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCC-C--CCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDP-S--QVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~-~--~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.||+.++.... . ..++||+|+... ...+...|++.+.++|||||++|-
T Consensus 109 -------g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 109 -------KQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDA---DKTNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEES---CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcC---ChHHhHHHHHHHHHhcCCCeEEEE
Confidence 11234889999988753200 0 037899996543 245678899999999999999984
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4e-10 Score=108.87 Aligned_cols=101 Identities=12% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..||+. +..|+|+|+|..|+..|+..+...
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~--------------------------------- 169 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH--------------------------------- 169 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 3468999999999999999998 889999999999998877332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCc---cEEEEec-ccCCh------------------hhHHHHHHHHH-Hhc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAW---DAVVTCF-FIDTA------------------HNIVEYIEIIS-RIL 324 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~f---D~VvT~F-FIDta------------------~Ni~~yl~~I~-~~L 324 (412)
...+++.++.+|+.+... ++| |+|+++- |+... .+-.++++.|. +.|
T Consensus 170 -----~l~~~v~~~~~D~~~~~~-----~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l 239 (284)
T 1nv8_A 170 -----GVSDRFFVRKGEFLEPFK-----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD 239 (284)
T ss_dssp -----TCTTSEEEEESSTTGGGG-----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC
T ss_pred -----CCCCceEEEECcchhhcc-----cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcC
Confidence 011237899999987432 578 9999872 33211 11237899999 999
Q ss_pred cCCcEEEE
Q 015160 325 KDGGVWIN 332 (412)
Q Consensus 325 KPGG~wIN 332 (412)
||||+++-
T Consensus 240 ~pgG~l~~ 247 (284)
T 1nv8_A 240 TSGKIVLM 247 (284)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEEE
Confidence 99999984
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-10 Score=102.36 Aligned_cols=105 Identities=16% Similarity=0.072 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||+. +..|+|+|+|..|+..++-.+...
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 117 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA------------------------------- 117 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-------------------------------
Confidence 4569999999999999999986 679999999999998776333210
Q ss_pred CCCCCCCCCCCceeEEecccccccC-CCCC--CCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS-DPSQ--VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~-~~~~--~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G 334 (412)
....++.+..+|+.+... .+.. .++||+|+...- ..+...+++.+.++|||||++|-..
T Consensus 118 -------g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 118 -------EAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred -------CCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 011247888999876421 0000 168999976322 3456789999999999999998543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-10 Score=110.05 Aligned_cols=113 Identities=17% Similarity=0.085 Sum_probs=81.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.+++.+.+.+... ++.+|||+|||+|.++..||++|.. |+|+|+|..|+..++..+...
T Consensus 62 ~~~~~l~~~l~~~---~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------- 123 (317)
T 1dl5_A 62 SLMALFMEWVGLD---KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL--------------- 123 (317)
T ss_dssp HHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhcCCC---CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 3455555555322 5679999999999999999999876 999999999997766322100
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
+ ..++.+..+|+.+... ..++||+|++..-+.... +.+.++|||||+
T Consensus 124 -----------g-------------~~~v~~~~~d~~~~~~---~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~ 170 (317)
T 1dl5_A 124 -----------G-------------IENVIFVCGDGYYGVP---EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGR 170 (317)
T ss_dssp -----------T-------------CCSEEEEESCGGGCCG---GGCCEEEEEECSBBSCCC------HHHHHHEEEEEE
T ss_pred -----------C-------------CCCeEEEECChhhccc---cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcE
Confidence 0 0126788999887432 247899999886555332 578899999999
Q ss_pred EEE-ecCc
Q 015160 330 WIN-LGPL 336 (412)
Q Consensus 330 wIN-~GPL 336 (412)
++- ++|.
T Consensus 171 lvi~~~~~ 178 (317)
T 1dl5_A 171 VIVPINLK 178 (317)
T ss_dssp EEEEBCBG
T ss_pred EEEEECCC
Confidence 985 4443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-10 Score=107.84 Aligned_cols=103 Identities=16% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|+++..||+. +..|+|+|+|..|+..++-.+...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 108 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN------------------------------- 108 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4569999999999999999998 679999999999998776433210
Q ss_pred CCCCCCCCCCCceeEEecccccccC-C-----------CCCC--CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS-D-----------PSQV--GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~-~-----------~~~~--~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++.+..+|+.+... . .+.. ++||+|+... ..++...+++.+.++|||||++|
T Consensus 109 -------g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~pgG~lv 178 (239)
T 2hnk_A 109 -------GLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLKPGGLLI 178 (239)
T ss_dssp -------TCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred -------CCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcCCCeEEE
Confidence 001236778888765311 0 0111 6899998653 24567799999999999999998
Q ss_pred E
Q 015160 332 N 332 (412)
Q Consensus 332 N 332 (412)
-
T Consensus 179 ~ 179 (239)
T 2hnk_A 179 A 179 (239)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-10 Score=106.35 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+|++| ..|+|+|+|..|+..++-.+......+. . .
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~---------------~-----~----- 103 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTA---------------S-----K----- 103 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC----------------C-----C-----
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccc---------------c-----c-----
Confidence 45799999999999999999997 4799999999999776633221100000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh---------HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---------IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N---------i~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|+.+........+.+|.|+.+| -|.... -.++++.+.++|||||+++-
T Consensus 104 ------~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~-p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 104 ------HGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCF-PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp ------STTTTEEEEECCTTSCGGGTSCTTCEEEEEEES-CCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCcEEEEeccHHHHHHHhccccccCEEEEEC-CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 001247889999887321112357899998554 222100 04799999999999999985
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-10 Score=104.73 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=81.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.++..|.... +..+||++|||+|..+..||+. +..|+++|+|..|+..++-.+...
T Consensus 60 ~~l~~l~~~~------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------------- 118 (237)
T 3c3y_A 60 QLMSFVLKLV------NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA--------------- 118 (237)
T ss_dssp HHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhh------CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 3566655543 3469999999999999999987 789999999999998776333210
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CC-C--CCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DP-S--QVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-~~-~--~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LK 325 (412)
...+++.+..||..++.. .+ . ..++||+|+... ...+...|++.+.++||
T Consensus 119 -----------------------g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~ 172 (237)
T 3c3y_A 119 -----------------------GVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVK 172 (237)
T ss_dssp -----------------------TCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEE
T ss_pred -----------------------CCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECC---chHHHHHHHHHHHHhcC
Confidence 011247889999877421 00 0 136899996431 23567899999999999
Q ss_pred CCcEEEE
Q 015160 326 DGGVWIN 332 (412)
Q Consensus 326 PGG~wIN 332 (412)
|||++|-
T Consensus 173 pGG~lv~ 179 (237)
T 3c3y_A 173 VGGIVAY 179 (237)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999984
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=104.33 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=73.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-------eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-------ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-------~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~ 261 (412)
++.+|||+|||+|.++..|++.+. .|+|+|+|..|+..++..+... .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~ 133 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD--------------------------K 133 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------C
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------C
Confidence 567999999999999999999865 9999999999998776333210 0
Q ss_pred cccCCCCCCCCCCCCceeEEeccccccc----CCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 262 VSIPDIHPASAGITEGFSMCGGDFVEVY----SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 262 v~iPDv~p~~~~~~~~~s~~~GDF~ely----~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
+.. ....++.+..+|+.+.. . ..+.||+|+....+.. +++.+.++|||||++|-
T Consensus 134 ~~~--------~~~~~v~~~~~d~~~~~~~~~~---~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 134 PEL--------LKIDNFKIIHKNIYQVNEEEKK---ELGLFDAIHVGASASE------LPEILVDLLAENGKLII 191 (227)
T ss_dssp GGG--------GSSTTEEEEECCGGGCCHHHHH---HHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEE
T ss_pred ccc--------cccCCEEEEECChHhcccccCc---cCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEE
Confidence 000 00123788899988743 2 2468999987655442 35888999999999985
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=112.10 Aligned_cols=129 Identities=10% Similarity=0.130 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc------CCeEEEEeCCHHHHHHHHhhhhcccccccccccc--cccc-cCCCCCc
Q 015160 189 SPPACLVPGAGLGR----LALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYP--WIHS-NCNSLSD 255 (412)
Q Consensus 189 ~~~rVLvPGCGlGR----La~eLA~~------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P--~i~~-~sn~~s~ 255 (412)
+..+||++|||||. +|..|++. |+.|+|+|+|..||..|+--. .......-.| +... |......
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~---y~~~~~~~~~~~~~~~~f~~~~~~ 181 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI---YRLSELKTLSPQQLQRYFMRGTGP 181 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE---EEGGGGTTSCHHHHHHHEEECCTT
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC---CchhhhhcCCHHHHHHHhhccccC
Confidence 45799999999999 66666665 479999999999998877211 0000000000 0000 0000000
Q ss_pred ccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 256 SDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 256 ~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+ ....+- + ....++.|.++|+.+... + ..+.||+|++.. |++. +...+.++.++++|||||+++
T Consensus 182 ~~--~~~~v~---~---~lr~~V~F~~~dl~~~~~-~-~~~~fDlI~crnvliyf~~-~~~~~vl~~~~~~L~pgG~L~ 249 (274)
T 1af7_A 182 HE--GLVRVR---Q---ELANYVEFSSVNLLEKQY-N-VPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLF 249 (274)
T ss_dssp SC--SEEEEC---H---HHHTTEEEEECCTTCSSC-C-CCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEE
T ss_pred CC--Cceeec---h---hhcccCeEEecccCCCCC-C-cCCCeeEEEECCchHhCCH-HHHHHHHHHHHHHhCCCcEEE
Confidence 00 000000 0 011348999999987311 1 146899999864 3443 346789999999999999998
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=121.16 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=69.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+.||||+|||.|.++..||++|+.|+|+|+|..||.+|+- ++.+.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~---~a~~~------------------------------- 111 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA---LAEEN------------------------------- 111 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHHTS-------------------------------
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH---HHHhc-------------------------------
Confidence 45799999999999999999999999999999999988872 11110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhH--HHHHHHHHHhccCCcE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI--VEYIEIISRILKDGGV 329 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni--~~yl~~I~~~LKPGG~ 329 (412)
...++.|..+|..++.. +...++||+|++.=.|...++. ...+..+.+.|+++|.
T Consensus 112 -----~~~~~~~~~~~~~~~~~-~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~ 168 (569)
T 4azs_A 112 -----PDFAAEFRVGRIEEVIA-ALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQ 168 (569)
T ss_dssp -----TTSEEEEEECCHHHHHH-HCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSS
T ss_pred -----CCCceEEEECCHHHHhh-hccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccc
Confidence 01137889999887632 1135789999887544433332 1233345555555544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.7e-09 Score=103.42 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=92.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
..+.+.+.+.+... ++.+|||||||+|.++..++++ +..++|+|++..|+..|
T Consensus 25 ~~l~~~~~~~~~~~---~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------------- 80 (421)
T 2ih2_A 25 PEVVDFMVSLAEAP---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------------- 80 (421)
T ss_dssp HHHHHHHHHHCCCC---TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------------
T ss_pred HHHHHHHHHhhccC---CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------------
Confidence 45777777776532 4569999999999999999984 57999999999885210
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC-C--------hhhH----
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID-T--------AHNI---- 313 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID-t--------a~Ni---- 313 (412)
.++.+..+|+.+... .++||+|+++ |+-. . ....
T Consensus 81 ---------------------------~~~~~~~~D~~~~~~----~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~ 129 (421)
T 2ih2_A 81 ---------------------------PWAEGILADFLLWEP----GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLY 129 (421)
T ss_dssp ---------------------------TTEEEEESCGGGCCC----SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHH
T ss_pred ---------------------------CCCcEEeCChhhcCc----cCCCCEEEECcCccCcccccccccccCHHHHHHH
Confidence 126788999987532 4689999996 3311 1 1222
Q ss_pred --------------HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCC
Q 015160 314 --------------VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 368 (412)
Q Consensus 314 --------------~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GF 368 (412)
..+++.+.++|||||+++-+-|--|.+. -..+++++.+.+.|+
T Consensus 130 ~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~------------~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 130 KKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL------------EDFALLREFLAREGK 186 (421)
T ss_dssp HHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC------------GGGHHHHHHHHHHSE
T ss_pred HHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcC------------ccHHHHHHHHHhcCC
Confidence 2568899999999999987655433211 134788998888887
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=106.98 Aligned_cols=134 Identities=15% Similarity=0.151 Sum_probs=92.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|+++..|+++ +..++++|+ ..|+..++ . .
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------------------------~--~-- 235 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT--------------------------------G--N-- 235 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC--------------------------------C--C--
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc--------------------------------c--C--
Confidence 3469999999999999999998 467999999 57862110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccC---CcEEEEecCcch---
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKD---GGVWINLGPLLY--- 338 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKP---GG~wIN~GPLly--- 338 (412)
.++.+..+||.+ .. | .||+|+....+....+ ..+.|+.++++||| ||++|-..+..-
T Consensus 236 ---------~~v~~~~~d~~~-~~-~----~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~ 300 (358)
T 1zg3_A 236 ---------ENLNFVGGDMFK-SI-P----SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 300 (358)
T ss_dssp ---------SSEEEEECCTTT-CC-C----CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTC
T ss_pred ---------CCcEEEeCccCC-CC-C----CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCC
Confidence 127889999987 22 2 4999998876654444 55999999999999 998874322110
Q ss_pred ------hhh---hccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 339 ------HFA---DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 339 ------h~~---~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
... +..-......-+.+.+|++++++++||++++..
T Consensus 301 ~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 301 DDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKIT 345 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred ccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEE
Confidence 000 000000000235699999999999999998755
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.3e-10 Score=100.34 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..|+++ | ..|+|+|+|..|+..++..+... ++..
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~~~~- 129 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD--------------------------DPTL- 129 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------CTHH-
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh--------------------------cccc-
Confidence 5679999999999999999987 4 68999999999997766332110 0000
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.+..+|+.+... ..+.||+|+....+.. .++.+.++|||||++|-
T Consensus 130 -------~~~~~v~~~~~d~~~~~~---~~~~fD~i~~~~~~~~------~~~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 130 -------LSSGRVQLVVGDGRMGYA---EEAPYDAIHVGAAAPV------VPQALIDQLKPGGRLIL 180 (226)
T ss_dssp -------HHTSSEEEEESCGGGCCG---GGCCEEEEEECSBBSS------CCHHHHHTEEEEEEEEE
T ss_pred -------cCCCcEEEEECCcccCcc---cCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEE
Confidence 001237788899876432 2468999987654432 34688999999999985
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=101.24 Aligned_cols=108 Identities=17% Similarity=0.055 Sum_probs=74.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
+...+.+.+.. .++.+|||+|||+|.++..|++.+ ..|+|+|+|..|+..++..+...
T Consensus 79 ~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 137 (235)
T 1jg1_A 79 MVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA------------------ 137 (235)
T ss_dssp HHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc------------------
Confidence 44444444432 256799999999999999999997 89999999999997776332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
+ ..++.+..+|+..-.. ..+.||+|+...-+.... +.+.++|||||++|-
T Consensus 138 --------~-------------~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi 187 (235)
T 1jg1_A 138 --------G-------------VKNVHVILGDGSKGFP---PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLII 187 (235)
T ss_dssp --------T-------------CCSEEEEESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred --------C-------------CCCcEEEECCcccCCC---CCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEE
Confidence 0 0126788888733221 124599999876544332 478899999999974
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=109.96 Aligned_cols=140 Identities=8% Similarity=0.079 Sum_probs=92.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++|. .|+|+|+|..|+..|+.-+.. + .
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~----n----------------------~------ 259 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA----N----------------------H------ 259 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH----T----------------------T------
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------C------
Confidence 456999999999999999999997 799999999999877632210 0 0
Q ss_pred CCCCCCCCC-ceeEEecccccccCC-CCCCCCccEEEEe--cc-------cCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 268 HPASAGITE-GFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FF-------IDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 268 ~p~~~~~~~-~~s~~~GDF~ely~~-~~~~~~fD~VvT~--FF-------IDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
... ++.++.+|+.++... ....++||+|+.. +| .+......+.++.+.++|||||+++-...
T Consensus 260 ------~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~- 332 (385)
T 2b78_A 260 ------LDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN- 332 (385)
T ss_dssp ------CCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC-
T ss_pred ------CCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC-
Confidence 011 478899998774210 0013589999874 22 22234455678888999999999974210
Q ss_pred chhhhhccCCCCCcccCCCHH----HHHHHHHhCCCEEEEEeeccccCC
Q 015160 337 LYHFADLYGQEDEMSIELSLE----DVKRVALHYGFEFEKEKTIETTYT 381 (412)
Q Consensus 337 lyh~~~~~g~~~~~~ieLS~E----EL~~ll~~~GFeii~e~~i~s~Y~ 381 (412)
+-.++.+ .++..+..+|++++.......-+.
T Consensus 333 --------------~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~D~p 367 (385)
T 2b78_A 333 --------------AANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSDFA 367 (385)
T ss_dssp --------------CTTSCHHHHHHHHHHHHTTCCCEEEEEECCCTTSC
T ss_pred --------------CCcCCHHHHHHHHHHHHHHcCCcEEEeCCCCCCCC
Confidence 1123334 455566688999666554333333
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.4e-09 Score=104.25 Aligned_cols=125 Identities=11% Similarity=0.051 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+| |+|.++..+|++|. .|+|+|+|..|+..++..+... +
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~--------------------------g----- 219 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI--------------------------G----- 219 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH--------------------------T-----
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-----
Confidence 467999999 99999999999986 8999999999998776322110 0
Q ss_pred CCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE-E-EecCcchhhhhc
Q 015160 267 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW-I-NLGPLLYHFADL 343 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~e-ly~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w-I-N~GPLlyh~~~~ 343 (412)
.. ++.++.+|+.+ +.. ...++||+|++.--.... .+..+++.++++|||||.+ | .+..
T Consensus 220 -------~~-~v~~~~~D~~~~l~~--~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~-------- 280 (373)
T 2qm3_A 220 -------YE-DIEIFTFDLRKPLPD--YALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR-------- 280 (373)
T ss_dssp -------CC-CEEEECCCTTSCCCT--TTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT--------
T ss_pred -------CC-CEEEEEChhhhhchh--hccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec--------
Confidence 01 37889999988 321 124689999986321111 3688999999999999943 2 2111
Q ss_pred cCCCCCcccCCCH---HHHHHHHH-hCCCEEEE
Q 015160 344 YGQEDEMSIELSL---EDVKRVAL-HYGFEFEK 372 (412)
Q Consensus 344 ~g~~~~~~ieLS~---EEL~~ll~-~~GFeii~ 372 (412)
..-+. +++.+++. +.||++..
T Consensus 281 --------~~~~~~~~~~~~~~l~~~~g~~~~~ 305 (373)
T 2qm3_A 281 --------RESSLDKWREIQKLLLNEFNVVITD 305 (373)
T ss_dssp --------TTCCHHHHHHHHHHHHHTSCCEEEE
T ss_pred --------CcCCHHHHHHHHHHHHHhcCcchhh
Confidence 01233 77888888 89998865
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=96.82 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=64.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C----------CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G----------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G----------f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ 257 (412)
++.+|||+|||+|.++..|+++ | ..|+|+|+|..+. +
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~------~-------------------------- 69 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP------L-------------------------- 69 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC------C--------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc------C--------------------------
Confidence 5679999999999999999998 5 6899999998320 0
Q ss_pred CccccccCCCCCCCCCCCCceeEE-ecccccccCC-----CCCCCCccEEEEecccCC----hhhH-------HHHHHHH
Q 015160 258 QLRPVSIPDIHPASAGITEGFSMC-GGDFVEVYSD-----PSQVGAWDAVVTCFFIDT----AHNI-------VEYIEII 320 (412)
Q Consensus 258 qlr~v~iPDv~p~~~~~~~~~s~~-~GDF~ely~~-----~~~~~~fD~VvT~FFIDt----a~Ni-------~~yl~~I 320 (412)
.++.+. .+|+.+.... ....++||+|++.+-++. ..+. ...++.+
T Consensus 70 ------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (196)
T 2nyu_A 70 ------------------EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVT 131 (196)
T ss_dssp ------------------TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 013445 5665542100 001358999998543221 1111 4789999
Q ss_pred HHhccCCcEEEE
Q 015160 321 SRILKDGGVWIN 332 (412)
Q Consensus 321 ~~~LKPGG~wIN 332 (412)
+++|||||++|-
T Consensus 132 ~~~LkpgG~lv~ 143 (196)
T 2nyu_A 132 PDILQPGGTFLC 143 (196)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHHhcCCCEEEE
Confidence 999999999985
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2e-09 Score=106.95 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=83.4
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~ 247 (412)
.|..++..+.-... ..+.+|||+|||+|.++.+|+++ +..|+++|+|..|+..|+--+.... .
T Consensus 105 ~y~e~L~~l~l~~~----~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~--~--------- 169 (334)
T 1xj5_A 105 AYQEMITHLPLCSI----PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA--I--------- 169 (334)
T ss_dssp HHHHHHHHHHHTTS----SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--G---------
T ss_pred HHHHHHHHHHHhhC----CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc--c---------
Confidence 35555555532211 14569999999999999999998 4689999999999987763221000 0
Q ss_pred ccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhh--HHHHHHHHHHh
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRI 323 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~N--i~~yl~~I~~~ 323 (412)
++. ..++.++.+|+.++... ...++||+|++..+ +..... ..++++.++++
T Consensus 170 -------------gl~-----------~~rv~~~~~D~~~~l~~-~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~ 224 (334)
T 1xj5_A 170 -------------GYE-----------DPRVNLVIGDGVAFLKN-AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARA 224 (334)
T ss_dssp -------------GGG-----------STTEEEEESCHHHHHHT-SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHH
T ss_pred -------------ccC-----------CCcEEEEECCHHHHHHh-ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHh
Confidence 000 12478899998874210 12478999998544 222222 36899999999
Q ss_pred ccCCcEEEEe
Q 015160 324 LKDGGVWINL 333 (412)
Q Consensus 324 LKPGG~wIN~ 333 (412)
|||||+++.-
T Consensus 225 LkpgG~lv~~ 234 (334)
T 1xj5_A 225 LRPGGVVCTQ 234 (334)
T ss_dssp EEEEEEEEEE
T ss_pred cCCCcEEEEe
Confidence 9999999963
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.7e-10 Score=100.86 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-------eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF-------ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-------~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr 260 (412)
++.+|||+|||+|.++..|+++ |. .|+|+|+|..|+..++..+.... ..
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~------------------- 140 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD----RS------------------- 140 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH----HH-------------------
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC----cc-------------------
Confidence 5679999999999999999985 53 89999999999987763332100 00
Q ss_pred ccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecC
Q 015160 261 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGP 335 (412)
Q Consensus 261 ~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-~GP 335 (412)
.+. ..++.+..+|+.+.+. ..+.||+|+....+... ++.+.++|||||++|- +++
T Consensus 141 ~~~-----------~~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 141 MLD-----------SGQLLIVEGDGRKGYP---PNAPYNAIHVGAAAPDT------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp HHH-----------HTSEEEEESCGGGCCG---GGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred ccC-----------CCceEEEECCcccCCC---cCCCccEEEECCchHHH------HHHHHHHhcCCCEEEEEEec
Confidence 000 0136788899876332 13689999877655432 3788999999999985 443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=104.64 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=100.4
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhccccc
Q 015160 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETA 237 (412)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~ 237 (412)
|+.--..||.. + .+.+. ++.+|||+|||+|.++..+|++|. .|+|+|+++.++..++.-+. .
T Consensus 108 f~~~~~~er~r----i----~~~~~-----~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~----~ 170 (278)
T 3k6r_A 108 FSPANVKERVR----M----AKVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH----L 170 (278)
T ss_dssp CCGGGHHHHHH----H----HHHCC-----TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHH----H
T ss_pred EcCCcHHHHHH----H----HHhcC-----CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHH----H
Confidence 77766777752 3 33332 567999999999999999999995 89999999999876552211 0
Q ss_pred ccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHH
Q 015160 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 317 (412)
Q Consensus 238 ~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl 317 (412)
+ ...+++.++.+|.+++.. .+.||.|+... ...-.+++
T Consensus 171 N----------------------------------~v~~~v~~~~~D~~~~~~----~~~~D~Vi~~~----p~~~~~~l 208 (278)
T 3k6r_A 171 N----------------------------------KVEDRMSAYNMDNRDFPG----ENIADRILMGY----VVRTHEFI 208 (278)
T ss_dssp T----------------------------------TCTTTEEEECSCTTTCCC----CSCEEEEEECC----CSSGGGGH
T ss_pred c----------------------------------CCCCcEEEEeCcHHHhcc----ccCCCEEEECC----CCcHHHHH
Confidence 0 112347889999988753 57899887542 22234678
Q ss_pred HHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 318 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 318 ~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+...++|||||++.- |.+... . ....-..+.++++++..||++...
T Consensus 209 ~~a~~~lk~gG~ih~-----~~~~~e---~--~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 209 PKALSIAKDGAIIHY-----HNTVPE---K--LMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp HHHHHHEEEEEEEEE-----EEEEEG---G--GTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCCEEEE-----Eeeecc---c--ccchhHHHHHHHHHHHcCCcEEEE
Confidence 888999999997641 222211 0 012345688899999999998653
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-09 Score=101.67 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=76.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.+.+.++.. ++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+.. .
T Consensus 16 i~~~i~~~~~~~---~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~---~---------------- 73 (285)
T 1zq9_A 16 IINSIIDKAALR---PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQG---T---------------- 73 (285)
T ss_dssp HHHHHHHHTCCC---TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTT---S----------------
T ss_pred HHHHHHHhcCCC---CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHh---c----------------
Confidence 556666655422 567999999999999999999999999999999999766522110 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-hhHHHHHH--------------
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYIE-------------- 318 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta-~Ni~~yl~-------------- 318 (412)
....++.++.+|+.++.. ..||+|++..-.... +-+...++
T Consensus 74 -------------------~~~~~v~~~~~D~~~~~~-----~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qk 129 (285)
T 1zq9_A 74 -------------------PVASKLQVLVGDVLKTDL-----PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQR 129 (285)
T ss_dssp -------------------TTGGGEEEEESCTTTSCC-----CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEH
T ss_pred -------------------CCCCceEEEEcceecccc-----hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhH
Confidence 001247889999987632 379999987422211 21233332
Q ss_pred HH--HHhccCCcEEE
Q 015160 319 II--SRILKDGGVWI 331 (412)
Q Consensus 319 ~I--~~~LKPGG~wI 331 (412)
++ +++|||||.+.
T Consensus 130 Eva~r~vlkPGg~~y 144 (285)
T 1zq9_A 130 EFALRLVAKPGDKLY 144 (285)
T ss_dssp HHHHHHHCCTTCTTC
T ss_pred HHHHHHhcCCCCccc
Confidence 33 36899999763
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.8e-10 Score=107.90 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|||+|.++.+++++ +..|+++|+|..|+..|+-.+..... . .+.
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~----------------------~~~--- 130 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-G----------------------AFD--- 130 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-T----------------------GGG---
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-c----------------------ccc---
Confidence 3469999999999999999998 56899999999999877632210000 0 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-----hhh--HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHN--IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-----a~N--i~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|+.+... ...++||+|+...+... ... ..++++.++++|||||+++.
T Consensus 131 --------~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 193 (314)
T 1uir_A 131 --------DPRAVLVIDDARAYLE--RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (314)
T ss_dssp --------CTTEEEEESCHHHHHH--HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred --------CCceEEEEchHHHHHH--hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEE
Confidence 1247889999887421 12478999998765432 122 36899999999999999984
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-09 Score=102.72 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++.+++++ +..|+++|+|..|+..|+-.+... ++ .+.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~---------------~~---------~~~--- 168 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI---------------SC---------GYE--- 168 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTT---------------SG---------GGG---
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhh---------------cc---------ccC---
Confidence 3469999999999999999998 478999999999998776221100 00 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|+.+... ...++||+|++..+- .....+ .++++.++++|||||+++.
T Consensus 169 --------~~~v~~~~~D~~~~l~--~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 228 (321)
T 2pt6_A 169 --------DKRVNVFIEDASKFLE--NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 228 (321)
T ss_dssp --------STTEEEEESCHHHHHH--HCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCcEEEEEccHHHHHh--hcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1247889999877421 124789999976542 122233 6899999999999999985
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=107.82 Aligned_cols=103 Identities=19% Similarity=0.183 Sum_probs=76.1
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+||++|||+|.++.+|+++ +..|+++|++..|+..|+--+. .+
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~-------------------------------~~-- 136 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFD-------------------------------IP-- 136 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSC-------------------------------CC--
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcc-------------------------------cc--
Confidence 359999999999999999983 7799999999999987762110 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|..++.. ....++||+|++-.|.. ....+ .++++.++++|||||+++.
T Consensus 137 ------~~~rv~v~~~Da~~~l~-~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~ 198 (317)
T 3gjy_A 137 ------RAPRVKIRVDDARMVAE-SFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVA 198 (317)
T ss_dssp ------CTTTEEEEESCHHHHHH-TCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCCceEEEECcHHHHHh-hccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 01348899999887532 11247899999865432 12222 5899999999999999984
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.5e-09 Score=102.81 Aligned_cols=130 Identities=11% Similarity=0.009 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||++ +..|+|+|+|..|+..++-.+... ++
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~--------------------------g~--- 168 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL--------------------------GV--- 168 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--------------------------TC---
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999999999986 368999999999997666332110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---ccCChh---------h-------HHHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FIDTAH---------N-------IVEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---F---FIDta~---------N-------i~~yl~~I~~~ 323 (412)
.++.++.+|+.++.. ..+.||+|+.. . .+...+ + ..+.|+.++++
T Consensus 169 ----------~~v~~~~~D~~~~~~---~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~ 235 (315)
T 1ixk_A 169 ----------LNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV 235 (315)
T ss_dssp ----------CSEEEESSCGGGGGG---GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CeEEEEECChhhccc---ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 136788899887642 24689999873 1 122111 1 14789999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 324 LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
|||||++|-..-- .+ -+=..+.+..++++.||+++..
T Consensus 236 LkpGG~lv~stcs-~~------------~~Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 236 LKPGGILVYSTCS-LE------------PEENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp EEEEEEEEEEESC-CC------------GGGTHHHHHHHHHHSSEEEECC
T ss_pred CCCCCEEEEEeCC-CC------------hHHhHHHHHHHHhcCCCEEecC
Confidence 9999999842110 00 0113456778888899988753
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-09 Score=103.33 Aligned_cols=172 Identities=13% Similarity=0.086 Sum_probs=104.7
Q ss_pred HHHHHHHhcCcc--cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCC--ChhHHHHHHc---CCeEEEEeCCHH
Q 015160 150 CIIRNIVRDWAA--EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGL--GRLALEISHL---GFISQGNEFSYY 222 (412)
Q Consensus 150 s~L~q~~RDWS~--eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGl--GRLa~eLA~~---Gf~V~GnD~S~~ 222 (412)
..-.++.+-|.. ....+-...+...+.+|... . ...+|||+|||+ |....++|++ +..|+|+|.|..
T Consensus 43 ~~~~~~~~~~P~~~~~a~~nr~fl~rav~~l~~~---~---g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~ 116 (277)
T 3giw_A 43 EAGDAMSREWPALPVHMRANRDWMNRAVAHLAKE---A---GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPI 116 (277)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHT---S---CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccc---c---CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChH
Confidence 444555555544 22222223334444444321 1 235899999998 5566777664 789999999999
Q ss_pred HHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEeccccccc---CCCCCCCCcc
Q 015160 223 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWD 299 (412)
Q Consensus 223 ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely---~~~~~~~~fD 299 (412)
||..|+-.+... ...++.|+.+|++++. ..+...+.||
T Consensus 117 mLa~Ar~~l~~~---------------------------------------~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 117 VLTLSQGLLAST---------------------------------------PEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp HHHTTHHHHCCC---------------------------------------SSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred HHHHHHHHhccC---------------------------------------CCCcEEEEEecccChhhhhcccccccccC
Confidence 997666433110 0124789999998852 1010023455
Q ss_pred -----EEEEe---cccCChhhHHHHHHHHHHhccCCcEEEE--ecCcch-h--------hhhccCCCCCcccCCCHHHHH
Q 015160 300 -----AVVTC---FFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLY-H--------FADLYGQEDEMSIELSLEDVK 360 (412)
Q Consensus 300 -----~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GPLly-h--------~~~~~g~~~~~~ieLS~EEL~ 360 (412)
+|+.+ .||....+...+|+++++.|+|||+++- +.+-.- + |.. .| .+ ....|.+||.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~-~g-~p--~~~rs~~ei~ 233 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA-RN-MP--MRLRTHAEAE 233 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH-TT-CC--CCCCCHHHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh-cC-CC--CccCCHHHHH
Confidence 45544 3666655578999999999999999984 222110 0 111 12 22 3357999999
Q ss_pred HHHHhCCCEEEE
Q 015160 361 RVALHYGFEFEK 372 (412)
Q Consensus 361 ~ll~~~GFeii~ 372 (412)
+++. ||++++
T Consensus 234 ~~f~--Glelve 243 (277)
T 3giw_A 234 EFFE--GLELVE 243 (277)
T ss_dssp HTTT--TSEECT
T ss_pred HHhC--CCcccC
Confidence 9994 999877
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=105.44 Aligned_cols=111 Identities=17% Similarity=0.194 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccc-cCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS-IPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~-iPD 266 (412)
.+.+|||+|||+|.++.+++++|. .|+++|+|..|+..|+-.+ ... . ++. ..+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~--~----------------------~l~~~~~ 129 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KID--N----------------------GLLEAML 129 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTT--T----------------------THHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhc--c----------------------ccccccc
Confidence 356999999999999999999965 8999999999998776322 100 0 000 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
.....++.++.+|..++.. . .++||+|+...+.. ....+ .++++.++++|||||+++.
T Consensus 130 -----~~~~~~v~~~~~D~~~~l~--~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~ 191 (281)
T 1mjf_A 130 -----NGKHEKAKLTIGDGFEFIK--N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 191 (281)
T ss_dssp -----TTCCSSEEEEESCHHHHHH--H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred -----cCCCCcEEEEECchHHHhc--c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0001247889999876422 1 46899999765421 12222 6899999999999999985
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=105.80 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=80.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
.|+.....+...+.. .++.+|||+|||+|.++..||+. | ..|+|+|+|..|+..|+-.+.... ..+.+
T Consensus 89 ~~~~~~~~~l~~l~~---~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~l---- 159 (336)
T 2b25_A 89 TFPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR--DSWKL---- 159 (336)
T ss_dssp CCHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHH--HHHTT----
T ss_pred cCHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhh--ccccc----
Confidence 444434444443321 25679999999999999999998 5 789999999999987763321100 00000
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
| .+. ....++.+..+|+.+... +...+.||+|+.... +...+++.++++|||
T Consensus 160 ----n---------~~~---------~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~~~~-----~~~~~l~~~~~~Lkp 211 (336)
T 2b25_A 160 ----S---------HVE---------EWPDNVDFIHKDISGATE-DIKSLTFDAVALDML-----NPHVTLPVFYPHLKH 211 (336)
T ss_dssp ----T---------CSS---------CCCCCEEEEESCTTCCC--------EEEEEECSS-----STTTTHHHHGGGEEE
T ss_pred ----c---------ccc---------ccCCceEEEECChHHccc-ccCCCCeeEEEECCC-----CHHHHHHHHHHhcCC
Confidence 0 000 011347889999887531 122467999987432 223478999999999
Q ss_pred CcEEEEecC
Q 015160 327 GGVWINLGP 335 (412)
Q Consensus 327 GG~wIN~GP 335 (412)
||++|-..|
T Consensus 212 gG~lv~~~~ 220 (336)
T 2b25_A 212 GGVCAVYVV 220 (336)
T ss_dssp EEEEEEEES
T ss_pred CcEEEEEeC
Confidence 999996544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.1e-10 Score=106.65 Aligned_cols=100 Identities=8% Similarity=-0.021 Sum_probs=68.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..+|++ ..|+|+|+|+ |+.. +.+. + ++.
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~-------a~~~-----------------------~--~~~-- 117 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVG-------GHEV-----------------------P--RIT-- 117 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCS-------SCCC-----------------------C--CCC--
T ss_pred CCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhh-------hhhh-----------------------h--hhh--
Confidence 5679999999999999999999 7899999998 7411 0000 0 000
Q ss_pred CCCCCCCCceeEE--ecccccccCCCCCCCCccEEEEecc-cCChh--h---HHHHHHHHHHhccCCc--EEEE
Q 015160 269 PASAGITEGFSMC--GGDFVEVYSDPSQVGAWDAVVTCFF-IDTAH--N---IVEYIEIISRILKDGG--VWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~--~GDF~ely~~~~~~~~fD~VvT~FF-IDta~--N---i~~yl~~I~~~LKPGG--~wIN 332 (412)
.....++.++ .+|++++. .++||+|++.+- +.... + ....|+.++++||||| .||-
T Consensus 118 ---~~~~~~v~~~~~~~D~~~l~-----~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 118 ---ESYGWNIVKFKSRVDIHTLP-----VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp ---CBTTGGGEEEECSCCTTTSC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ---hccCCCeEEEecccCHhHCC-----CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 0011246788 89998853 378999998642 11111 1 1237899999999999 8874
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-09 Score=102.43 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++.++++.+ -.|+++|+|..|+..++-.+... . ...
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~-------------------~-----~~~---- 129 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI-------------------S-----CGY---- 129 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTT-------------------S-----GGG----
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHh-------------------c-----ccc----
Confidence 45699999999999999999883 68999999999998776322100 0 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|+.+... ...++||+|+...+.. ....+ .++++.++++|||||+++.
T Consensus 130 -------~~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~ 190 (283)
T 2i7c_A 130 -------EDKRVNVFIEDASKFLE--NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 190 (283)
T ss_dssp -------GSTTEEEEESCHHHHHH--HCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCcEEEEECChHHHHH--hCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 01247889999887432 1247899999755422 23334 5899999999999999985
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-09 Score=104.76 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+|||+|||+|.++.+|++++ ..|+++|+|..|+..|+--+.... . .+.
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~--~----------------------~~~--- 147 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA--I----------------------GYS--- 147 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--G----------------------GGG---
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhh--c----------------------ccC---
Confidence 45699999999999999999985 689999999999987763221000 0 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--Chh--hHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAH--NIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~--Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|..++.. ...++||+|++..+.. .+. ...++++.++++|||||+++.
T Consensus 148 --------~~rv~v~~~Da~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 207 (304)
T 2o07_A 148 --------SSKLTLHVGDGFEFMK--QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 207 (304)
T ss_dssp --------CTTEEEEESCHHHHHH--TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred --------CCcEEEEECcHHHHHh--hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEE
Confidence 1247889999877422 1247899999764321 111 124789999999999999985
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=111.75 Aligned_cols=146 Identities=13% Similarity=0.100 Sum_probs=94.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCC------CChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAG------LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEW 240 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCG------lGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~ 240 (412)
.|.++.+.+.+.+.. ++.+|||+||| +|..+..++++ +..|+|+|+|..|.. +
T Consensus 201 ~y~~~Ye~lL~~l~~----~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~------~-------- 262 (419)
T 3sso_A 201 WFTPHYDRHFRDYRN----QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV------D-------- 262 (419)
T ss_dssp BCHHHHHHHHGGGTT----SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG------C--------
T ss_pred hHHHHHHHHHHhhcC----CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh------c--------
Confidence 466666665554432 45799999999 88888888875 679999999998820 0
Q ss_pred cccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCC---CCCCCccEEEEecccCChhhHHHHH
Q 015160 241 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP---SQVGAWDAVVTCFFIDTAHNIVEYI 317 (412)
Q Consensus 241 ~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~---~~~~~fD~VvT~FFIDta~Ni~~yl 317 (412)
..++.+++||+.++.... ...++||+|++.. .....+...+|
T Consensus 263 ----------------------------------~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL 307 (419)
T 3sso_A 263 ----------------------------------ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSF 307 (419)
T ss_dssp ----------------------------------BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHH
T ss_pred ----------------------------------CCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHH
Confidence 013788999988753200 0037899998643 33456788999
Q ss_pred HHHHHhccCCcEEEEecCcchhhhhccCCCC--CcccCCCHHHHHHHHHhCCCE
Q 015160 318 EIISRILKDGGVWINLGPLLYHFADLYGQED--EMSIELSLEDVKRVALHYGFE 369 (412)
Q Consensus 318 ~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~--~~~ieLS~EEL~~ll~~~GFe 369 (412)
+.++++|||||++|... +...+-..+++.. ...-.-..+-++.++.....+
T Consensus 308 ~el~rvLKPGGvlVi~D-l~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~ 360 (419)
T 3sso_A 308 AALFPHVRPGGLYVIED-MWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQ 360 (419)
T ss_dssp HHHGGGEEEEEEEEEEC-GGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGG
T ss_pred HHHHHhcCCCeEEEEEe-cccccCcccCCCccCCcchhHHHHHHHHHHHHhccc
Confidence 99999999999998532 2222222222111 012233566777777766643
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=103.62 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+|||+|||+|.++.+++++ | -.|+++|++..|+..|+--+... ++ ..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~---------------~~---------~~---- 126 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI---------------AG---------KL---- 126 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH---------------HT---------TT----
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhh---------------cc---------cc----
Confidence 3569999999999999999998 5 58999999999998776322100 00 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhh--HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHN--IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~N--i~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|..+.-. ...++||+|+.-.+-.. +.. ..++++.++++|||||+++.
T Consensus 127 -------~~~rv~v~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 127 -------DDPRVDVQVDDGFMHIA--KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp -------TSTTEEEEESCSHHHHH--TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCceEEEECcHHHHHh--hCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 01247889999887432 12478999997543211 111 25899999999999999985
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-09 Score=104.23 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=74.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+|||+|||+|.++.+++++ | ..|+++|+|..|+..++--+..... .+.
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~------------------------~~~--- 142 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC------------------------GFD--- 142 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG------------------------GGG---
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc------------------------ccC---
Confidence 3469999999999999999998 3 6899999999999877632210000 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC---Chh--hHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAH--NIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~--Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|+.+... ...++||+|+...+-. ... ...++++.++++|||||+++.
T Consensus 143 --------~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 203 (296)
T 1inl_A 143 --------DPRAEIVIANGAEYVR--KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 203 (296)
T ss_dssp --------CTTEEEEESCHHHHGG--GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCceEEEECcHHHHHh--hCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1247889999877422 1247899999754321 111 126899999999999999985
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-09 Score=102.28 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+|+++- .|+|+|+|..|+..++..+.. + .
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~----n----------------------~----- 167 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL----N----------------------K----- 167 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH----T----------------------T-----
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-----
Confidence 557999999999999999999965 899999999999776632210 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.||+.++ .. .++||+|+...- .+..++++.+.++|||||+++-
T Consensus 168 --------l~~~~~~~~d~~~~-~~---~~~~D~Vi~d~p----~~~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 168 --------LNNVIPILADNRDV-EL---KDVADRVIMGYV----HKTHKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp --------CSSEEEEESCGGGC-CC---TTCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred --------CCCEEEEECChHHc-Cc---cCCceEEEECCc----ccHHHHHHHHHHHcCCCCEEEE
Confidence 01367899999886 31 468999976543 2556789999999999999873
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-08 Score=102.61 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..+|+.|..|+|+|+|..|+..++..+.. + ++.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~----n----------------------g~~----- 262 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALR----L----------------------GLR----- 262 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----H----------------------TCC-----
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHH----h----------------------CCC-----
Confidence 467999999999999999999999999999999999776632210 0 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC-------hhhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT-------AHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt-------a~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..+..+|+.++... ..+.||+|+.. +|... ..+..++++.+.++|||||+++-
T Consensus 263 ---------~~~~~~D~~~~l~~--~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~ 324 (393)
T 4dmg_A 263 ---------VDIRHGEALPTLRG--LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWL 324 (393)
T ss_dssp ---------CEEEESCHHHHHHT--CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ---------CcEEEccHHHHHHH--hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 13457888775321 12449999864 23322 23345778888999999999984
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7e-08 Score=92.95 Aligned_cols=152 Identities=15% Similarity=0.077 Sum_probs=96.8
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccc
Q 015160 163 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNI 242 (412)
Q Consensus 163 G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I 242 (412)
...||-.+|.++-..+-+. + ++.+|||+|||+|-|+..++ -+..++|.|+|..|+.+++..+...
T Consensus 85 STrerLp~ld~fY~~i~~~-~-----~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~-------- 149 (253)
T 3frh_A 85 STKERLAELDTLYDFIFSA-E-----TPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREK-------- 149 (253)
T ss_dssp HHHHHGGGHHHHHHHHTSS-C-----CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHT--------
T ss_pred CHHHHhhhHHHHHHHHhcC-C-----CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhc--------
Confidence 3567777777777766655 2 46699999999999999988 7789999999999998877543210
Q ss_pred cccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHH
Q 015160 243 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEI 319 (412)
Q Consensus 243 ~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~ 319 (412)
...+.+..+|+..... .+.||+|+..- .|+...- .....
T Consensus 150 --------------------------------g~~~~~~v~D~~~~~~----~~~~DvvLllk~lh~LE~q~~--~~~~~ 191 (253)
T 3frh_A 150 --------------------------------DWDFTFALQDVLCAPP----AEAGDLALIFKLLPLLEREQA--GSAMA 191 (253)
T ss_dssp --------------------------------TCEEEEEECCTTTSCC----CCBCSEEEEESCHHHHHHHST--THHHH
T ss_pred --------------------------------CCCceEEEeecccCCC----CCCcchHHHHHHHHHhhhhch--hhHHH
Confidence 0126788888776432 46899998753 3332221 23448
Q ss_pred HHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 320 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 320 I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+.+.|+++|++|++.- ....|..+ .++=.+++..+-.-...+.++.+.
T Consensus 192 ll~aL~~~~vvVsfPt-----ksl~Gr~~--gm~~~Y~~~~e~~~~~~~~~~~~~ 239 (253)
T 3frh_A 192 LLQSLNTPRMAVSFPT-----RSLGGRGK--GMEANYAAWFEGGLPAEFEIEDKK 239 (253)
T ss_dssp HHHHCBCSEEEEEEEC-----C-------------CHHHHHHHHSCTTEEEEEEE
T ss_pred HHHHhcCCCEEEEcCh-----HHhcCCCc--chhhHHHHHHHHHhhccchhhhhe
Confidence 8889999999999631 11112222 344444444433335566776654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-09 Score=105.58 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|||+|.++.++++. +..|+++|+|..|+..|+-.+... ++ ++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~---------------~~---------~~---- 159 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM---------------SC---------GF---- 159 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT---------------SG---------GG----
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHh---------------cc---------cc----
Confidence 3469999999999999999988 468999999999998776221100 00 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|+.+... ...++||+|++..+- ..+..+ .++++.++++|||||+++.
T Consensus 160 -------~~~rv~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~ 220 (314)
T 2b2c_A 160 -------SHPKLDLFCGDGFEFLK--NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 220 (314)
T ss_dssp -------GCTTEEEECSCHHHHHH--HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred -------CCCCEEEEEChHHHHHH--hcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE
Confidence 01247889999887422 124789999976532 112223 6899999999999999985
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.5e-09 Score=101.39 Aligned_cols=97 Identities=8% Similarity=-0.032 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeC----CHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEF----SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~----S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
++.+|||+|||+|.++..||++| .|+|+|+ |..|+. .. .. +..
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~~~~-------~~-~~----------------------~~~-- 128 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEE-------PI-PM----------------------STY-- 128 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-------CC-CC----------------------CST--
T ss_pred CCCEEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchhHHH-------HH-Hh----------------------hhc--
Confidence 56799999999999999999995 8999999 554420 00 00 000
Q ss_pred CCCCCCCCCCCCceeEEec-ccccccCCCCCCCCccEEEEecccCCh---hh---HHHHHHHHHHhccCCcEEEE
Q 015160 265 PDIHPASAGITEGFSMCGG-DFVEVYSDPSQVGAWDAVVTCFFIDTA---HN---IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~G-DF~ely~~~~~~~~fD~VvT~FFIDta---~N---i~~yl~~I~~~LKPGG~wIN 332 (412)
...++.+..+ |++++. .++||+|++.+-..+. .+ ....|+.+.++|||||.||.
T Consensus 129 ---------~~~~v~~~~~~D~~~l~-----~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 129 ---------GWNLVRLQSGVDVFFIP-----PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp ---------TGGGEEEECSCCTTTSC-----CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ---------CCCCeEEEeccccccCC-----cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 0124788888 888753 3689999985422211 11 12578889999999999985
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-08 Score=100.87 Aligned_cols=107 Identities=11% Similarity=0.094 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..++..+.. + ++ +
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~----n----------------------gl--~-- 269 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------KL--D-- 269 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T----------------------TC--C--
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CC--C--
Confidence 456999999999999999999986 799999999999877632210 0 00 0
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--ccc-------CChhhHHHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFI-------DTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~--FFI-------Dta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|+.++... +...++||+|+.. +|. +......+.+..+.++|||||+++-
T Consensus 270 -------~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 337 (396)
T 3c0k_A 270 -------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLT 337 (396)
T ss_dssp -------GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEE
T ss_pred -------ccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 11378899998875320 0013589999875 221 2225677899999999999999874
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=101.17 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=79.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHHhhhhccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSSFILNHTETA 237 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---------------Gf~V~GnD~S~~ML~~s~filn~~~~~ 237 (412)
++++.+.+.+.. .++.+|||||||+|.+...+++. +..++|+|++..|+..|+..+.. .
T Consensus 158 ~v~~~mv~~l~~---~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l--~- 231 (445)
T 2okc_A 158 PLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--H- 231 (445)
T ss_dssp HHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH--T-
T ss_pred HHHHHHHHHhCC---CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH--h-
Confidence 455555554422 24679999999999999988864 46899999999999877632210 0
Q ss_pred ccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh-----
Q 015160 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA----- 310 (412)
Q Consensus 238 ~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta----- 310 (412)
++. ..+..+..||++.... .++||+|+++ |.....
T Consensus 232 -----------------------g~~-----------~~~~~i~~gD~l~~~~----~~~fD~Iv~NPPf~~~~~~~~~~ 273 (445)
T 2okc_A 232 -----------------------GIG-----------TDRSPIVCEDSLEKEP----STLVDVILANPPFGTRPAGSVDI 273 (445)
T ss_dssp -----------------------TCC-----------SSCCSEEECCTTTSCC----SSCEEEEEECCCSSCCCTTCCCC
T ss_pred -----------------------CCC-----------cCCCCEeeCCCCCCcc----cCCcCEEEECCCCCCcccccchh
Confidence 000 0024678899876532 3589999987 322110
Q ss_pred ----------hhHHHHHHHHHHhccCCcEEEEecC
Q 015160 311 ----------HNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 311 ----------~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
..-..+++.+.++|||||+++-+-|
T Consensus 274 ~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 274 NRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 1124789999999999999986544
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-09 Score=100.03 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=66.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+.. . +
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~----~----------------------~------- 88 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLY----E----------------------G------- 88 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 567999999999999999999999999999999999766632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChhhHHHHH---------------HHHHHhccCCc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYI---------------EIISRILKDGG 328 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~Ni~~yl---------------~~I~~~LKPGG 328 (412)
..++.++.+|+.++.. ++||+|++.. |--+.+.+...+ +.+.++|+|+|
T Consensus 89 ------~~~v~~~~~D~~~~~~-----~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 89 ------YNNLEVYEGDAIKTVF-----PKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp ------CCCEEC----CCSSCC-----CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred ------CCceEEEECchhhCCc-----ccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 0236788899887532 4799999864 222233345555 55778999888
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-08 Score=98.16 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=87.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-------CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-------f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~ 261 (412)
++.+|||||||+|.++..+++.+ ..++|+|++..|+..|+..+... +
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~--------------------------g 183 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------------------------R 183 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH--------------------------T
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC--------------------------C
Confidence 45799999999999999998875 67999999999998777322100 0
Q ss_pred cccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c-ccCChh--------------hH-HHHHHHHHHh
Q 015160 262 VSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAH--------------NI-VEYIEIISRI 323 (412)
Q Consensus 262 v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F-FIDta~--------------Ni-~~yl~~I~~~ 323 (412)
+ ++.+..||+++.. ..+.||+|+++ | ++.... +. ..+++.+.+.
T Consensus 184 ~--------------~~~i~~~D~l~~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~ 245 (344)
T 2f8l_A 184 Q--------------KMTLLHQDGLANL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY 245 (344)
T ss_dssp C--------------CCEEEESCTTSCC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred C--------------CceEEECCCCCcc----ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHH
Confidence 0 1467888877632 24789999987 2 332211 12 2579999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEE
Q 015160 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEF 370 (412)
Q Consensus 324 LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFei 370 (412)
|||||+++-+-|--+ +. .-..+++++.+.+.|+..
T Consensus 246 Lk~gG~~~~v~p~~~-~~-----------~~~~~~ir~~l~~~~~~~ 280 (344)
T 2f8l_A 246 TKPGGYLFFLVPDAM-FG-----------TSDFAKVDKFIKKNGHIE 280 (344)
T ss_dssp EEEEEEEEEEEEGGG-GG-----------STTHHHHHHHHHHHEEEE
T ss_pred hCCCCEEEEEECchh-cC-----------CchHHHHHHHHHhCCeEE
Confidence 999999876444211 11 013588999888877643
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.83 E-value=7.1e-09 Score=99.40 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=71.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+.+||++|||+|.++.++++.|-.|+++|++..|+..|+--+.. . + ..+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~------------~---~---------~~~------ 121 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH------------F---H---------EVK------ 121 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTT------------H---H---------HHH------
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh------------h---c---------ccc------
Confidence 346999999999999999998887899999999998654411100 0 0 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|..++. ++||+|+... .+...+++.++++|||||+++.
T Consensus 122 -----~~~rv~~~~~D~~~~~------~~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 122 -----NNKNFTHAKQLLDLDI------KKYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp -----TCTTEEEESSGGGSCC------CCEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEE
T ss_pred -----CCCeEEEEechHHHHH------hhCCEEEECC-----CChHHHHHHHHHhcCCCcEEEE
Confidence 0124788899987642 6799998742 1233589999999999999986
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-08 Score=92.82 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=43.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
.+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 17 ~~~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~ 69 (244)
T 1qam_A 17 HNIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 69 (244)
T ss_dssp HHHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCC---CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence 356666665542 25679999999999999999999999999999999997655
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.80 E-value=8.8e-09 Score=103.26 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..++..+.. + .
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~----n----------------------~------ 264 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL----N----------------------G------ 264 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T----------------------T------
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C------
Confidence 456999999999999999999987 899999999999777632210 0 0
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~--FFIDta-------~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|+.++... ....++||+|+.. +|.... .+..+++..+.++|||||+++-
T Consensus 265 ------~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 333 (396)
T 2as0_A 265 ------VEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 333 (396)
T ss_dssp ------CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------CCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 011478899998775320 0013689999874 232222 4456788999999999998874
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-08 Score=97.13 Aligned_cols=133 Identities=14% Similarity=-0.034 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHH--cC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISH--LG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||+ .| ..|+|+|+|..|+..++..+... +
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~--------------------------g---- 132 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM--------------------------G---- 132 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT--------------------------T----
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh--------------------------C----
Confidence 567999999999999999998 35 78999999999997665322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEec-c--cC---------------ChhhHHHHHHHHHHhccC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCF-F--ID---------------TAHNIVEYIEIISRILKD 326 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~F-F--ID---------------ta~Ni~~yl~~I~~~LKP 326 (412)
..++.++.+|+.++... ....+.||+|+..- | +- ......+.++.+.++|||
T Consensus 133 ---------~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp 203 (274)
T 3ajd_A 133 ---------VLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK 203 (274)
T ss_dssp ---------CCSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE
T ss_pred ---------CCcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 01367888998875320 00136899998641 1 11 112346889999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHH-hCCCEEEEE
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVAL-HYGFEFEKE 373 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~-~~GFeii~e 373 (412)
||++|-...-+. -+=..+.+..+++ ..+|+++..
T Consensus 204 gG~lv~stcs~~-------------~~ene~~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 204 DGELVYSTCSME-------------VEENEEVIKYILQKRNDVELIII 238 (274)
T ss_dssp EEEEEEEESCCC-------------TTSSHHHHHHHHHHCSSEEEECC
T ss_pred CCEEEEEECCCC-------------hHHhHHHHHHHHHhCCCcEEecC
Confidence 999984211100 0123455666665 457877653
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-08 Score=97.43 Aligned_cols=104 Identities=13% Similarity=0.001 Sum_probs=74.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||+|||+|.++..+|+.+..|+|+|+|..|+..++..+.. + .
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~----n----------------------~-------- 255 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL----N----------------------G-------- 255 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH----T----------------------T--------
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 45899999999999999999977899999999999877632210 0 0
Q ss_pred CCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cccCC-------hhhHHHHHHHHHHhccCCcEEEE
Q 015160 270 ASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDT-------AHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~--FFIDt-------a~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|+.++... ....++||+|+.. +|... .....+++..+.++|||||+++-
T Consensus 256 -----~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 323 (382)
T 1wxx_A 256 -----LGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT 323 (382)
T ss_dssp -----CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -----CCCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 01267899998875320 0013689999863 23211 14456788999999999999884
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-08 Score=108.26 Aligned_cols=140 Identities=12% Similarity=0.132 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|+.|.. |+|+|+|..||..++--+.. + ++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~----n----------------------gl~---- 588 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRL----N----------------------GLT---- 588 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T----------------------TCC----
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 4569999999999999999999985 99999999999776622110 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--ccc---------CChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI---------DTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFI---------Dta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
..++.++.+|+.++.. ...++||+|+.. +|. +...+..+.++.+.++|||||+++-....
T Consensus 589 -------~~~v~~i~~D~~~~l~--~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 589 -------GRAHRLIQADCLAWLR--EANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp -------STTEEEEESCHHHHHH--HCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred -------ccceEEEecCHHHHHH--hcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 1247899999988532 124789999874 232 22345667799999999999999831110
Q ss_pred chhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE--EeeccccCCCCc
Q 015160 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK--EKTIETTYTTNP 384 (412)
Q Consensus 337 lyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~--e~~i~s~Y~~d~ 384 (412)
..+.+. ...+.+.||+... ...++..+..++
T Consensus 660 -------------~~~~~~----~~~l~~~g~~~~~i~~~~lp~df~~~~ 692 (703)
T 3v97_A 660 -------------RGFRMD----LDGLAKLGLKAQEITQKTLSQDFARNR 692 (703)
T ss_dssp -------------TTCCCC----HHHHHHTTEEEEECTTTTCCGGGTTCS
T ss_pred -------------cccccC----HHHHHHcCCceeeeeeccCCCCCCCCC
Confidence 012333 3456678998544 234444454443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-09 Score=99.95 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=68.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++ +. +
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~-------~~------------------------~------ 71 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSS-------EK------------------------L------ 71 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSS-------CT------------------------T------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHH-------HH------------------------h------
Confidence 5679999999999999999999999999999999963211 10 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChhhHHHH----------H----HHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEY----------I----EIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~y----------l----~~I~~~LKPGG~wIN 332 (412)
....++.++.+|+.++.. + ..++| .|+++ |++.+ .-+... + +.+.++|||||.+.-
T Consensus 72 ----~~~~~v~~~~~D~~~~~~-~-~~~~f-~vv~n~Py~~~~-~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 72 ----KLNTRVTLIHQDILQFQF-P-NKQRY-KIVGNIPYHLST-QIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp ----TTCSEEEECCSCCTTTTC-C-CSSEE-EEEEECCSSSCH-HHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred ----ccCCceEEEECChhhcCc-c-cCCCc-EEEEeCCccccH-HHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 001247889999988642 1 12578 55554 34432 223333 3 679999999998763
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=98.79 Aligned_cols=120 Identities=11% Similarity=0.052 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++.. |+.+..|+|+|+|..|+..++..+.. +
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~----n------------------------------ 239 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKL----N------------------------------ 239 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHH----T------------------------------
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 456999999999999999 98777899999999999776632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~ 348 (412)
....++.++.+|+.++. ++||+|+.. ......++++.+.++|||||+++-.. +. +
T Consensus 240 ----~l~~~v~~~~~D~~~~~------~~fD~Vi~d----pP~~~~~~l~~~~~~L~~gG~l~~~~-----~~------~ 294 (336)
T 2yx1_A 240 ----KLEHKIIPILSDVREVD------VKGNRVIMN----LPKFAHKFIDKALDIVEEGGVIHYYT-----IG------K 294 (336)
T ss_dssp ----TCTTTEEEEESCGGGCC------CCEEEEEEC----CTTTGGGGHHHHHHHEEEEEEEEEEE-----EE------S
T ss_pred ----CCCCcEEEEECChHHhc------CCCcEEEEC----CcHhHHHHHHHHHHHcCCCCEEEEEE-----ee------c
Confidence 01124788999988752 689999863 33333478999999999999887411 10 0
Q ss_pred CcccCCCHHHHHHHHHhC-CCEEEEEe
Q 015160 349 EMSIELSLEDVKRVALHY-GFEFEKEK 374 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~-GFeii~e~ 374 (412)
. .+++.+.+.+. ||+++...
T Consensus 295 ----~--~~~~~~~l~~~~~~~i~~~~ 315 (336)
T 2yx1_A 295 ----D--FDKAIKLFEKKCDCEVLEKR 315 (336)
T ss_dssp ----S--SHHHHHHHHHHSEEEEEEEE
T ss_pred ----C--chHHHHHHHHhcCCcEEEEE
Confidence 1 34555666665 88876544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.6e-08 Score=97.52 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=76.0
Q ss_pred CCCeEEEecC------CCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCc
Q 015160 189 SPPACLVPGA------GLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQL 259 (412)
Q Consensus 189 ~~~rVLvPGC------GlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ql 259 (412)
++.+|||+|| |+|. ..++++ +..|+|+|+|.. + .
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~--------------------------- 105 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------S--------------------------- 105 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------C---------------------------
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------C---------------------------
Confidence 5679999999 4466 333433 479999999984 0 0
Q ss_pred cccccCCCCCCCCCCCCceeE-EecccccccCCCCCCCCccEEEEeccc--------CC---hhhHHHHHHHHHHhccCC
Q 015160 260 RPVSIPDIHPASAGITEGFSM-CGGDFVEVYSDPSQVGAWDAVVTCFFI--------DT---AHNIVEYIEIISRILKDG 327 (412)
Q Consensus 260 r~v~iPDv~p~~~~~~~~~s~-~~GDF~ely~~~~~~~~fD~VvT~FFI--------Dt---a~Ni~~yl~~I~~~LKPG 327 (412)
++.+ ++||++++.. .++||+|++.... +. ..-+.+.|+.++++||||
T Consensus 106 -----------------~v~~~i~gD~~~~~~----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG 164 (290)
T 2xyq_A 106 -----------------DADSTLIGDCATVHT----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG 164 (290)
T ss_dssp -----------------SSSEEEESCGGGCCC----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred -----------------CCEEEEECccccCCc----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC
Confidence 1456 8899987532 3689999986431 11 222457899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
|.++-.. +.. -..+++..++++.||..++.
T Consensus 165 G~~v~~~---~~~-------------~~~~~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 165 GSIAVKI---TEH-------------SWNADLYKLMGHFSWWTAFV 194 (290)
T ss_dssp EEEEEEE---CSS-------------SCCHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEE---ecc-------------CCHHHHHHHHHHcCCcEEEE
Confidence 9998521 110 12258999999999986553
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-07 Score=94.93 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||++ | ..|+|+|+|..|+..++..+... +
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~--------------------------g---- 308 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM--------------------------G---- 308 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------T----
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999999985 3 68999999999997665322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---ccCCh---------hhH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FIDTA---------HNI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F---FIDta---------~Ni-------~~yl~~I~~~ 323 (412)
..++.++.+|+.++.. ....++||+|+. |. .+... .++ .+.|+.+.++
T Consensus 309 ---------~~~v~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~ 378 (450)
T 2yxl_A 309 ---------IKIVKPLVKDARKAPE-IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARL 378 (450)
T ss_dssp ---------CCSEEEECSCTTCCSS-SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTT
T ss_pred ---------CCcEEEEEcChhhcch-hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0136778889877532 012368999986 21 22211 222 5789999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhC-CCEEEE
Q 015160 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFEK 372 (412)
Q Consensus 324 LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~-GFeii~ 372 (412)
|||||++|-...-+. -+=..+.+..++++. ||+++.
T Consensus 379 LkpGG~lvy~tcs~~-------------~~ene~~v~~~l~~~~~~~~~~ 415 (450)
T 2yxl_A 379 VKPGGRLLYTTCSIF-------------KEENEKNIRWFLNVHPEFKLVP 415 (450)
T ss_dssp EEEEEEEEEEESCCC-------------GGGTHHHHHHHHHHCSSCEECC
T ss_pred cCCCcEEEEEeCCCC-------------hhhHHHHHHHHHHhCCCCEEee
Confidence 999999983211100 012345677777765 788765
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=95.39 Aligned_cols=100 Identities=12% Similarity=0.171 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC----------------------------------------CeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLG----------------------------------------FISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G----------------------------------------f~V~GnD~S~~ML~~s~ 228 (412)
++.+|||||||+|.++.++|..| ..|+|+|+|..|+..|+
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 45789999999999999999886 46999999999998887
Q ss_pred hhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF 306 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FF 306 (412)
..+... + ....+.+.++|+.++.. .++||+|++. |.
T Consensus 275 ~Na~~~--------------------------g------------l~~~i~~~~~D~~~l~~----~~~~D~Iv~NPPyg 312 (385)
T 3ldu_A 275 ENAEIA--------------------------G------------VDEYIEFNVGDATQFKS----EDEFGFIITNPPYG 312 (385)
T ss_dssp HHHHHH--------------------------T------------CGGGEEEEECCGGGCCC----SCBSCEEEECCCCC
T ss_pred HHHHHc--------------------------C------------CCCceEEEECChhhcCc----CCCCcEEEECCCCc
Confidence 332110 0 11237899999998743 3689999986 43
Q ss_pred --cCChhhHHHHHHHHHHhccC--CcEE
Q 015160 307 --IDTAHNIVEYIEIISRILKD--GGVW 330 (412)
Q Consensus 307 --IDta~Ni~~yl~~I~~~LKP--GG~w 330 (412)
+....++.+..+.+.+.||+ ||..
T Consensus 313 ~rl~~~~~l~~ly~~lg~~lk~~~g~~~ 340 (385)
T 3ldu_A 313 ERLEDKDSVKQLYKELGYAFRKLKNWSY 340 (385)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTSBSCEE
T ss_pred CccCCHHHHHHHHHHHHHHHhhCCCCEE
Confidence 33345677778888888887 4443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=94.86 Aligned_cols=101 Identities=10% Similarity=0.112 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----------------------------------------EEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI----------------------------------------SQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~----------------------------------------V~GnD~S~~ML~~s~ 228 (412)
++..||||+||+|.++.|.|..+.. |+|+|+|..|+..|+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 4568999999999999999987653 999999999998877
Q ss_pred hhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF 306 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FF 306 (412)
--+... ...+.+.+.++|+.++.. .++||+|++. |.
T Consensus 281 ~Na~~~--------------------------------------gl~~~I~~~~~D~~~~~~----~~~fD~Iv~NPPYg 318 (393)
T 3k0b_A 281 QNAVEA--------------------------------------GLGDLITFRQLQVADFQT----EDEYGVVVANPPYG 318 (393)
T ss_dssp HHHHHT--------------------------------------TCTTCSEEEECCGGGCCC----CCCSCEEEECCCCC
T ss_pred HHHHHc--------------------------------------CCCCceEEEECChHhCCC----CCCCCEEEECCCCc
Confidence 322110 011237889999998643 3589999998 54
Q ss_pred c--CChhhHHHHHHHHHHhccC--CcEEE
Q 015160 307 I--DTAHNIVEYIEIISRILKD--GGVWI 331 (412)
Q Consensus 307 I--Dta~Ni~~yl~~I~~~LKP--GG~wI 331 (412)
. .....+.+..+.+.+.||+ ||...
T Consensus 319 ~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 319 ERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred cccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 3 2334566777777778876 55443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.4e-08 Score=93.16 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=102.4
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccc
Q 015160 163 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEW 240 (412)
Q Consensus 163 G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~ 240 (412)
...||-.+|.++-..+-..++ ...+|||+|||+|=|+.-++.. ...+.|+|++..|+.+++-.+...
T Consensus 111 STreRLp~lD~fY~~i~~~i~-----~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~------ 179 (281)
T 3lcv_B 111 STRERLPHLDEFYRELFRHLP-----RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL------ 179 (281)
T ss_dssp HHHHHGGGHHHHHHHHGGGSC-----CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT------
T ss_pred CHHHHhHhHHHHHHHHHhccC-----CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 457888888888888877764 3569999999999999999887 358999999999998877444210
Q ss_pred cccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHH-HHHHH
Q 015160 241 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV-EYIEI 319 (412)
Q Consensus 241 ~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~-~yl~~ 319 (412)
+ ...++..+|+..-. ..+.||+|+..--|...++-. ...-.
T Consensus 180 --------------------g--------------~~~~~~v~D~~~~~----p~~~~DvaL~lkti~~Le~q~kg~g~~ 221 (281)
T 3lcv_B 180 --------------------N--------------VPHRTNVADLLEDR----LDEPADVTLLLKTLPCLETQQRGSGWE 221 (281)
T ss_dssp --------------------T--------------CCEEEEECCTTTSC----CCSCCSEEEETTCHHHHHHHSTTHHHH
T ss_pred --------------------C--------------CCceEEEeeecccC----CCCCcchHHHHHHHHHhhhhhhHHHHH
Confidence 0 11567788876533 258899998754333222211 13338
Q ss_pred HHHhccCCcEEEEecCcchhhhhccCCCCCccc-CCCHHHHHHHHHhCCCEEEEEe
Q 015160 320 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSI-ELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 320 I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~i-eLS~EEL~~ll~~~GFeii~e~ 374 (412)
+...|+|||++||+.- ....|..+ .+ +.=.+..++.+...|+.+.+..
T Consensus 222 ll~aL~~~~vvVSfp~-----ksl~Grs~--gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 222 VIDIVNSPNIVVTFPT-----KSLGQRSK--GMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHSSCSEEEEEEEC-----C---------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHhCCCCEEEeccc-----hhhcCCCc--chhhHHHHHHHHHHHhcCCceeeee
Confidence 9999999999999632 11112122 22 2233556666777788665543
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.7e-07 Score=91.57 Aligned_cols=101 Identities=9% Similarity=0.093 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----------------------------------------EEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI----------------------------------------SQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~----------------------------------------V~GnD~S~~ML~~s~ 228 (412)
++..||||+||+|.++.|.|..+.. |+|+|+|..|+..|+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 4568999999999999999987643 999999999998877
Q ss_pred hhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF 306 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FF 306 (412)
..+... ...+.+.+.++|+.++.. .++||+|++. |-
T Consensus 274 ~Na~~~--------------------------------------gl~~~I~~~~~D~~~l~~----~~~fD~Iv~NPPYG 311 (384)
T 3ldg_A 274 KNAREV--------------------------------------GLEDVVKLKQMRLQDFKT----NKINGVLISNPPYG 311 (384)
T ss_dssp HHHHHT--------------------------------------TCTTTEEEEECCGGGCCC----CCCSCEEEECCCCT
T ss_pred HHHHHc--------------------------------------CCCCceEEEECChHHCCc----cCCcCEEEECCchh
Confidence 332110 111237899999998743 3589999998 53
Q ss_pred --cCChhhHHHHHHHHHHhccC--CcEEE
Q 015160 307 --IDTAHNIVEYIEIISRILKD--GGVWI 331 (412)
Q Consensus 307 --IDta~Ni~~yl~~I~~~LKP--GG~wI 331 (412)
+....++.+..+.+.+.||+ ||...
T Consensus 312 ~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 312 ERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred hccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 55556788888888888887 65543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=95.81 Aligned_cols=130 Identities=16% Similarity=0.067 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++-.+... ++
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~--------------------------g~--- 155 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW--------------------------GV--- 155 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH--------------------------TC---
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999986 358999999999997665322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---ccCChhhH----------------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FIDTAHNI----------------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---F---FIDta~Ni----------------~~yl~~I~~~ 323 (412)
.++.++.+|..++.. ...+.||+|+.- . .+...+++ .+.|+.+.++
T Consensus 156 ----------~nv~v~~~Da~~l~~--~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 223 (456)
T 3m4x_A 156 ----------SNAIVTNHAPAELVP--HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKM 223 (456)
T ss_dssp ----------SSEEEECCCHHHHHH--HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred ----------CceEEEeCCHHHhhh--hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 136778888877532 114789999862 1 11111111 2679999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 324 LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
|||||++|-.. ..+ .-+=..+.+..++++.||+++.
T Consensus 224 LkpGG~LvYsT-Cs~------------~~eEne~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 224 LKNKGQLIYST-CTF------------APEENEEIISWLVENYPVTIEE 259 (456)
T ss_dssp EEEEEEEEEEE-SCC------------CGGGTHHHHHHHHHHSSEEEEC
T ss_pred cCCCcEEEEEE-eec------------ccccCHHHHHHHHHhCCCEEEe
Confidence 99999998311 000 0122456778888889988775
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-07 Score=89.68 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=62.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.+.+.+... ++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+..
T Consensus 38 i~~~Iv~~l~~~---~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~-------------------- 94 (295)
T 3gru_A 38 FVNKAVESANLT---KDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL-------------------- 94 (295)
T ss_dssp HHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--------------------
T ss_pred HHHHHHHhcCCC---CcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--------------------
Confidence 444444444322 567999999999999999999999999999999999766522210
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 305 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F 305 (412)
..++.++.||+.++.. ....||+|+.+.
T Consensus 95 ---------------------~~~v~vi~gD~l~~~~---~~~~fD~Iv~Nl 122 (295)
T 3gru_A 95 ---------------------YNNIEIIWGDALKVDL---NKLDFNKVVANL 122 (295)
T ss_dssp ---------------------CSSEEEEESCTTTSCG---GGSCCSEEEEEC
T ss_pred ---------------------CCCeEEEECchhhCCc---ccCCccEEEEeC
Confidence 0237889999998643 235799999773
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.6e-07 Score=92.03 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=67.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..||+.|..|+|+|+|..|+..|+..+.. + .
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~----n----------------------g------- 336 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEI----N----------------------N------- 336 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----H----------------------T-------
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 456999999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc-cCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF-IDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF-IDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
. . +.+..+|+.++.. .+||+|+..-- -.. ....++.+. .|||||+++-
T Consensus 337 -----l-~-v~~~~~d~~~~~~-----~~fD~Vv~dPPr~g~---~~~~~~~l~-~l~p~givyv 385 (425)
T 2jjq_A 337 -----V-D-AEFEVASDREVSV-----KGFDTVIVDPPRAGL---HPRLVKRLN-REKPGVIVYV 385 (425)
T ss_dssp -----C-C-EEEEECCTTTCCC-----TTCSEEEECCCTTCS---CHHHHHHHH-HHCCSEEEEE
T ss_pred -----C-c-EEEEECChHHcCc-----cCCCEEEEcCCccch---HHHHHHHHH-hcCCCcEEEE
Confidence 0 1 5789999888632 28999987321 111 123555554 4999998863
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-07 Score=94.02 Aligned_cols=130 Identities=15% Similarity=0.050 Sum_probs=85.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|..+..||+++ ..|+|+|+|..|+..++-.+... ++
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~--------------------------g~---- 295 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL--------------------------GM---- 295 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT--------------------------TC----
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc--------------------------CC----
Confidence 56799999999999999999986 58999999999997655322110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---ccCC---------hhhH-------HHHHHHHHHhc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FIDT---------AHNI-------VEYIEIISRIL 324 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F---FIDt---------a~Ni-------~~yl~~I~~~L 324 (412)
++.+..+|+.++... ...++||+|+. |. .+.. ..++ .+.++.+.++|
T Consensus 296 ----------~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~L 364 (429)
T 1sqg_A 296 ----------KATVKQGDGRYPSQW-CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL 364 (429)
T ss_dssp ----------CCEEEECCTTCTHHH-HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE
T ss_pred ----------CeEEEeCchhhchhh-cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 145678888765310 11368999986 32 1211 1222 47799999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHh-CCCEEEE
Q 015160 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 372 (412)
Q Consensus 325 KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~-~GFeii~ 372 (412)
||||++|-...-+.. +=..+.+..++++ -+|+++.
T Consensus 365 kpGG~lvystcs~~~-------------~ene~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 365 KTGGTLVYATCSVLP-------------EENSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp EEEEEEEEEESCCCG-------------GGTHHHHHHHHHHCTTCEECS
T ss_pred CCCCEEEEEECCCCh-------------hhHHHHHHHHHHhCCCCEEeC
Confidence 999999842211100 1134566777765 4788764
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=97.31 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++-.+... +
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~--------------------------g---- 166 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC--------------------------G---- 166 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH--------------------------T----
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999999986 368999999999997666322110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---ccC---------Chhh-------HHHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FID---------TAHN-------IVEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F---FID---------ta~N-------i~~yl~~I~~~ 323 (412)
..++.++.+|+.++.. ...+.||+|+. |. .+. +..+ ..+.|+.+.++
T Consensus 167 ---------~~nv~~~~~D~~~~~~--~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~ 235 (479)
T 2frx_A 167 ---------ISNVALTHFDGRVFGA--AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHA 235 (479)
T ss_dssp ---------CCSEEEECCCSTTHHH--HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCcEEEEeCCHHHhhh--hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHh
Confidence 0136778889887532 01468999987 32 111 1111 23678999999
Q ss_pred ccCCcEEEE
Q 015160 324 LKDGGVWIN 332 (412)
Q Consensus 324 LKPGG~wIN 332 (412)
|||||++|-
T Consensus 236 LkpGG~Lvy 244 (479)
T 2frx_A 236 LRPGGTLVY 244 (479)
T ss_dssp EEEEEEEEE
T ss_pred cCCCCEEEE
Confidence 999999983
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.2e-07 Score=86.27 Aligned_cols=97 Identities=14% Similarity=0.041 Sum_probs=67.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.|-+..... ++ +|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+
T Consensus 35 i~~~Iv~~~~~~---~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~---------------------- 88 (271)
T 3fut_A 35 HLRRIVEAARPF---TG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETL---------------------- 88 (271)
T ss_dssp HHHHHHHHHCCC---CS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHT----------------------
T ss_pred HHHHHHHhcCCC---CC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------------------
Confidence 555555444322 46 9999999999999999999999999999999997654111
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhhHHHHHHH
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIEI 319 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yl~~ 319 (412)
+ ..++.++.||+.++.. + ....+|.||++. +|.+. -+.++++.
T Consensus 89 -----------~---------~~~v~vi~~D~l~~~~-~-~~~~~~~iv~NlPy~iss~-il~~ll~~ 133 (271)
T 3fut_A 89 -----------S---------GLPVRLVFQDALLYPW-E-EVPQGSLLVANLPYHIATP-LVTRLLKT 133 (271)
T ss_dssp -----------T---------TSSEEEEESCGGGSCG-G-GSCTTEEEEEEECSSCCHH-HHHHHHHH
T ss_pred -----------C---------CCCEEEEECChhhCCh-h-hccCccEEEecCcccccHH-HHHHHhcC
Confidence 0 0237899999988643 1 113689998874 56443 35555554
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-07 Score=96.96 Aligned_cols=129 Identities=13% Similarity=0.020 Sum_probs=85.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++-.+... ++
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~--------------------------G~--- 151 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW--------------------------GA--- 151 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--------------------------CC---
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999976 248999999999997666322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---cc---------CChhhH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FI---------DTAHNI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F---FI---------Dta~Ni-------~~yl~~I~~~ 323 (412)
. +.++.+|+.++.. ...++||+|+. |. .+ .+..++ .+.|+.+.++
T Consensus 152 ----------~-v~~~~~Da~~l~~--~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 218 (464)
T 3m6w_A 152 ----------P-LAVTQAPPRALAE--AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRL 218 (464)
T ss_dssp ----------C-CEEECSCHHHHHH--HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTT
T ss_pred ----------e-EEEEECCHHHhhh--hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 1 4677888877531 01478999985 21 11 111222 6789999999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhC-CCEEEE
Q 015160 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFEK 372 (412)
Q Consensus 324 LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~-GFeii~ 372 (412)
|||||++|-.. ..++ -+=..+.+..++++. +|+++.
T Consensus 219 LkpGG~LvysT-Cs~~------------~eEne~vv~~~l~~~~~~~l~~ 255 (464)
T 3m6w_A 219 LGPGGVLVYST-CTFA------------PEENEGVVAHFLKAHPEFRLED 255 (464)
T ss_dssp EEEEEEEEEEE-SCCC------------GGGTHHHHHHHHHHCTTEEEEC
T ss_pred cCCCcEEEEEe-ccCc------------hhcCHHHHHHHHHHCCCcEEEe
Confidence 99999998311 0010 122456677777776 688775
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=89.18 Aligned_cols=124 Identities=14% Similarity=0.097 Sum_probs=80.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..||+++..|+|+|+|..|+..|+..+.. + .
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 332 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL----N----------------------G------- 332 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 456999999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEec-ccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~F-FIDta~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g 345 (412)
..++.+..+|+.+... .+...++||+|+..- +.. ..+.++.+.+ ++|++++.- ..|-
T Consensus 333 ------~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g----~~~~~~~l~~-~~p~~ivyvsc~p~--------- 392 (433)
T 1uwv_A 333 ------LQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIK-LEPIRIVYVSCNPA--------- 392 (433)
T ss_dssp ------CCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHH-HCCSEEEEEESCHH---------
T ss_pred ------CCceEEEECCHHHHhhhhhhhcCCCCEEEECCCCcc----HHHHHHHHHh-cCCCeEEEEECChH---------
Confidence 0137889999887422 112246899998632 211 1234455443 788887642 2221
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.| ..++. ++.+.||++.+..
T Consensus 393 -------tl-ard~~-~l~~~Gy~~~~~~ 412 (433)
T 1uwv_A 393 -------TL-ARDSE-ALLKAGYTIARLA 412 (433)
T ss_dssp -------HH-HHHHH-HHHHTTCEEEEEE
T ss_pred -------HH-HhhHH-HHHHCCcEEEEEE
Confidence 11 12344 4456799998744
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.5e-06 Score=82.78 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhccCCcEEEE--ecC-----c-------ch-h-----hhhc--cCC--------CCCcccCCCHHHHHH
Q 015160 312 NIVEYIEIISRILKDGGVWIN--LGP-----L-------LY-H-----FADL--YGQ--------EDEMSIELSLEDVKR 361 (412)
Q Consensus 312 Ni~~yl~~I~~~LKPGG~wIN--~GP-----L-------ly-h-----~~~~--~g~--------~~~~~ieLS~EEL~~ 361 (412)
|...+|+.+++.|||||.+|- .|. . +| . +.+. .|. -....+..|.+|++.
T Consensus 203 D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~ 282 (374)
T 3b5i_A 203 DLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKE 282 (374)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHH
Confidence 455679999999999999983 221 1 11 1 1111 111 011245679999999
Q ss_pred HHH-hCCCEEEEEeec
Q 015160 362 VAL-HYGFEFEKEKTI 376 (412)
Q Consensus 362 ll~-~~GFeii~e~~i 376 (412)
+++ ..||+|.+.+..
T Consensus 283 ~l~~~~~F~I~~le~~ 298 (374)
T 3b5i_A 283 VVDANGSFAIDKLVVY 298 (374)
T ss_dssp HHHHHCSEEEEEEEEE
T ss_pred HHHhcCCcEEEEEEEE
Confidence 998 599999886543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.38 E-value=9.7e-07 Score=84.44 Aligned_cols=40 Identities=13% Similarity=-0.065 Sum_probs=37.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~ 68 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQ 68 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHH
T ss_pred CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 5679999999999999999999999999999999997655
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.6e-07 Score=88.67 Aligned_cols=110 Identities=9% Similarity=-0.008 Sum_probs=72.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.+.+.... .+.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. +
T Consensus 202 l~~~~~~~~~~----~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~----n--------------- 258 (369)
T 3bt7_A 202 MLEWALDVTKG----SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA----N--------------- 258 (369)
T ss_dssp HHHHHHHHTTT----CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHH----T---------------
T ss_pred HHHHHHHHhhc----CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c---------------
Confidence 44444444432 245899999999999999999888999999999999877632210 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCC------------CCCccEEEEecccCChhhHHHHHHHH
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQ------------VGAWDAVVTCFFIDTAHNIVEYIEII 320 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-~~~~------------~~~fD~VvT~FFIDta~Ni~~yl~~I 320 (412)
+ ..++.+..+|+.++.. .+.. .+.||+|+. |.... .+.+.+
T Consensus 259 -------g-------------~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~----dPPr~--g~~~~~ 312 (369)
T 3bt7_A 259 -------H-------------IDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV----DPPRS--GLDSET 312 (369)
T ss_dssp -------T-------------CCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEE----CCCTT--CCCHHH
T ss_pred -------C-------------CCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEE----CcCcc--ccHHHH
Confidence 0 0136788888776421 0000 137999964 54321 234567
Q ss_pred HHhccCCcEEEE
Q 015160 321 SRILKDGGVWIN 332 (412)
Q Consensus 321 ~~~LKPGG~wIN 332 (412)
.+.|++||.+|-
T Consensus 313 ~~~l~~~g~ivy 324 (369)
T 3bt7_A 313 EKMVQAYPRILY 324 (369)
T ss_dssp HHHHTTSSEEEE
T ss_pred HHHHhCCCEEEE
Confidence 777889998874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.2e-07 Score=89.96 Aligned_cols=112 Identities=11% Similarity=-0.045 Sum_probs=72.8
Q ss_pred CCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||+|||+|.++..+|++ | -.|++||++..++..++.-+..... .+..|+-
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~------------------------~~~~~~~ 103 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFD------------------------GELRESK 103 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCC------------------------SCCEECS
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcc------------------------ccccccc
Confidence 458999999999999999998 4 5799999999999777633321100 0000000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.........++.++.+|..++... ..+.||+|+ +|..-...++++...++|||||+++
T Consensus 104 ~~~~~~gl~~i~v~~~Da~~~~~~--~~~~fD~I~----lDP~~~~~~~l~~a~~~lk~gG~l~ 161 (378)
T 2dul_A 104 GRAILKGEKTIVINHDDANRLMAE--RHRYFHFID----LDPFGSPMEFLDTALRSAKRRGILG 161 (378)
T ss_dssp SEEEEESSSEEEEEESCHHHHHHH--STTCEEEEE----ECCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred ccccccCCCceEEEcCcHHHHHHh--ccCCCCEEE----eCCCCCHHHHHHHHHHhcCCCCEEE
Confidence 000000011278899998875321 135799998 3433234588999999999999775
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-06 Score=91.08 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=78.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--------------------CCeEEEEeCCHHHHHHHHhhhhc
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--------------------GFISQGNEFSYYMMICSSFILNH 233 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--------------------Gf~V~GnD~S~~ML~~s~filn~ 233 (412)
+++.|.+.+.. .++.+|||||||+|.+...+++. ...+.|+|++..|+..|+..+..
T Consensus 157 iv~~mv~~l~p---~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l 233 (541)
T 2ar0_A 157 LIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 233 (541)
T ss_dssp HHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc---CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence 44554444321 25679999999999998887754 24799999999999877743210
Q ss_pred ccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC---
Q 015160 234 TETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID--- 308 (412)
Q Consensus 234 ~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID--- 308 (412)
|...+. |+ ....+..||++.... ...+.||+|+++ |-..
T Consensus 234 -------------~gi~~~------------~~---------~~~~I~~gDtL~~~~--~~~~~fD~Vv~NPPf~~~~~~ 277 (541)
T 2ar0_A 234 -------------HDIEGN------------LD---------HGGAIRLGNTLGSDG--ENLPKAHIVATNPPFGSAAGT 277 (541)
T ss_dssp -------------TTCCCB------------GG---------GTBSEEESCTTSHHH--HTSCCEEEEEECCCCTTCSSC
T ss_pred -------------hCCCcc------------cc---------ccCCeEeCCCccccc--ccccCCeEEEECCCcccccch
Confidence 000000 00 114678888775421 124689999987 3211
Q ss_pred ---------ChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 309 ---------TAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 309 ---------ta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
+...-..++..+.+.|||||+++-+-|
T Consensus 278 ~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 278 NITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 111124789999999999999886544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9.4e-07 Score=95.02 Aligned_cols=118 Identities=23% Similarity=0.200 Sum_probs=79.7
Q ss_pred chHH-HHHHHHhhCCCCCC-CCCCeEEEecCCCChh---HHHHHHcC-C--eEEEEeCCHHHHHHHHhhhhccccccccc
Q 015160 170 CYKP-ILEELDALFPNRSK-ESPPACLVPGAGLGRL---ALEISHLG-F--ISQGNEFSYYMMICSSFILNHTETAGEWN 241 (412)
Q Consensus 170 ~y~p-Il~~L~~~~p~~~~-~~~~rVLvPGCGlGRL---a~eLA~~G-f--~V~GnD~S~~ML~~s~filn~~~~~~~~~ 241 (412)
.|.. |...|....+.... .....|||+|||+|-| +...++++ - +|.|+|-|. |...+..+.+. +.
T Consensus 336 ~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~----N~-- 408 (637)
T 4gqb_A 336 QYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQF----EE-- 408 (637)
T ss_dssp HHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHH----HT--
T ss_pred HHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHh----cc--
Confidence 4444 44556655543221 1345799999999999 44444443 2 589999997 65555544321 11
Q ss_pred ccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHH
Q 015160 242 IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIE 318 (412)
Q Consensus 242 I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~ 318 (412)
..+.+.++.||++++.. .++.|+||+= +|++-.. ..+.|.
T Consensus 409 --------------------------------~~dkVtVI~gd~eev~L----PEKVDIIVSEwMG~fLl~E~-mlevL~ 451 (637)
T 4gqb_A 409 --------------------------------WGSQVTVVSSDMREWVA----PEKADIIVSELLGSFADNEL-SPECLD 451 (637)
T ss_dssp --------------------------------TGGGEEEEESCTTTCCC----SSCEEEEECCCCBTTBGGGC-HHHHHH
T ss_pred --------------------------------CCCeEEEEeCcceeccC----CcccCEEEEEcCcccccccC-CHHHHH
Confidence 12348899999999864 3789999986 4666553 558888
Q ss_pred HHHHhccCCcEEE
Q 015160 319 IISRILKDGGVWI 331 (412)
Q Consensus 319 ~I~~~LKPGG~wI 331 (412)
...|.|||||+.|
T Consensus 452 Ardr~LKPgGimi 464 (637)
T 4gqb_A 452 GAQHFLKDDGVSI 464 (637)
T ss_dssp HHGGGEEEEEEEE
T ss_pred HHHHhcCCCcEEc
Confidence 8899999999998
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5e-06 Score=90.11 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------------------------------------------CeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--------------------------------------------FISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--------------------------------------------f~V~GnD~S~~ML 224 (412)
++..||||+||+|.++.+.|..+ ..+.|+|++..|+
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45689999999999999999764 4799999999999
Q ss_pred HHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 015160 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (412)
Q Consensus 225 ~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~ 304 (412)
..|+.-+..+ ...+.+.+.++|+.++.. |...+.||+||++
T Consensus 270 ~~A~~N~~~a--------------------------------------gv~~~i~~~~~D~~~~~~-~~~~~~~d~Iv~N 310 (703)
T 3v97_A 270 QRARTNARLA--------------------------------------GIGELITFEVKDVAQLTN-PLPKGPYGTVLSN 310 (703)
T ss_dssp HHHHHHHHHT--------------------------------------TCGGGEEEEECCGGGCCC-SCTTCCCCEEEEC
T ss_pred HHHHHHHHHc--------------------------------------CCCCceEEEECChhhCcc-ccccCCCCEEEeC
Confidence 8887332110 111237899999998643 2223489999998
Q ss_pred --cc--cCChhhHHHHHHHHH---HhccCCcEEE
Q 015160 305 --FF--IDTAHNIVEYIEIIS---RILKDGGVWI 331 (412)
Q Consensus 305 --FF--IDta~Ni~~yl~~I~---~~LKPGG~wI 331 (412)
|- +....++.+..+.+. +.++|||...
T Consensus 311 PPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ 344 (703)
T 3v97_A 311 PPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS 344 (703)
T ss_dssp CCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence 53 444445555555554 4455788775
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.6e-06 Score=85.88 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=90.3
Q ss_pred CeEEEecCCCChhHHHHHHc-----------------CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHL-----------------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~-----------------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
.+||||+||+|.+...+++. ...+.|+|++..|+..|+.-+-. |
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l-------------~------ 306 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI-------------R------ 306 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH-------------T------
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH-------------h------
Confidence 49999999999998776542 45799999999999877733210 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC-----------------------
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID----------------------- 308 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID----------------------- 308 (412)
++. .++.+..||.+.... ....+||+||++ |-..
T Consensus 307 -------gi~------------~~i~i~~gDtL~~~~--~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~ 365 (544)
T 3khk_A 307 -------GID------------FNFGKKNADSFLDDQ--HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRI 365 (544)
T ss_dssp -------TCC------------CBCCSSSCCTTTSCS--CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEE
T ss_pred -------CCC------------cccceeccchhcCcc--cccccccEEEECCCcCCccccchhhhhhhhhhcCccccccc
Confidence 000 012234566544321 124678888886 3221
Q ss_pred ---Chh-hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE-EeeccccCCCC
Q 015160 309 ---TAH-NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTYTTN 383 (412)
Q Consensus 309 ---ta~-Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~-e~~i~s~Y~~d 383 (412)
... .-..+|..+.+.|||||+.+-+-|--+-+.. .-....|++.|.+.+. +.. -......+.
T Consensus 366 ~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~----------~~~~~~iRk~Lle~~~-l~aII~LP~~lF~-- 432 (544)
T 3khk_A 366 LTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSN----------TNNEGEIRKTLVEQDL-VECMVALPGQLFT-- 432 (544)
T ss_dssp CCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCC----------GGGHHHHHHHHHHTTC-EEEEEECCTTBCC--
T ss_pred ccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcC----------cchHHHHHHHHHhCCc-HhEEEECCCCCCC--
Confidence 111 1236899999999999998766553222210 1246788988877654 332 222211111
Q ss_pred cccccccccceEEEEEEEcC
Q 015160 384 PRSMMQNRYFTAFWTMRKKS 403 (412)
Q Consensus 384 ~~sm~~~~Y~~~f~VarK~~ 403 (412)
.....+..||.+|..
T Consensus 433 -----~t~i~t~Ilvl~K~k 447 (544)
T 3khk_A 433 -----NTQIPACIWFLTKDK 447 (544)
T ss_dssp -----SCSSCEEEEEEESCC
T ss_pred -----CCCCCeEEEEEecCC
Confidence 123355667777754
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3.7e-06 Score=80.16 Aligned_cols=38 Identities=16% Similarity=0.008 Sum_probs=32.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~ 228 (412)
++.+|||+|||+|.++. +++ |.. |+|+|+|..|+..++
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~ 60 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQ 60 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHH
T ss_pred CcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHH
Confidence 45689999999999999 764 677 999999999997555
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.7e-05 Score=81.11 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=85.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~ 263 (412)
++.+||||+||+|.+...+++. ...+.|+|++..|+..|+.-+- . .++.
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~--l------------------------~gi~ 274 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI--L------------------------HGVP 274 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH--H------------------------TTCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH--H------------------------cCCC
Confidence 5679999999999998888776 5689999999999987763221 0 0110
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC--------------------Chhh-HHHHHHHH
Q 015160 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID--------------------TAHN-IVEYIEII 320 (412)
Q Consensus 264 iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID--------------------ta~N-i~~yl~~I 320 (412)
..++.+..||++...-+......||+||++ |-.. ...+ -..++..+
T Consensus 275 -----------~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~ 343 (542)
T 3lkd_A 275 -----------IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHG 343 (542)
T ss_dssp -----------GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHH
T ss_pred -----------cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHH
Confidence 012567888877641001124789999987 3111 0011 12579999
Q ss_pred HHhcc-CCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCC
Q 015160 321 SRILK-DGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 368 (412)
Q Consensus 321 ~~~LK-PGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GF 368 (412)
.+.|| |||+..-+-|--+-+.. -....|++.|.+.+.
T Consensus 344 l~~Lk~~gGr~a~VlP~g~Lf~~-----------~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 344 YYHLKQDNGVMAIVLPHGVLFRG-----------NAEGTIRKALLEEGA 381 (542)
T ss_dssp HHTBCTTTCEEEEEEETHHHHCC-----------THHHHHHHHHHHTTC
T ss_pred HHHhCCCceeEEEEecchHhhCC-----------chhHHHHHHHHhCCc
Confidence 99999 99999765553332210 125678888776554
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.9e-07 Score=84.36 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=35.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCH-------HHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSY-------YMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~-------~ML~~s~ 228 (412)
++.+|||+|||+|+++..||++|..|+|+|+|. .|+..++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~ 129 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRAL 129 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHH
Confidence 456899999999999999999999999999999 6765544
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=9.3e-06 Score=77.13 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~ 228 (412)
+++.+-+.++.. ++.+|||+|||+|.++..|+++| ..|+|+|+|..|+..++
T Consensus 19 i~~~iv~~~~~~---~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~ 71 (249)
T 3ftd_A 19 VLKKIAEELNIE---EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLK 71 (249)
T ss_dssp HHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHT
T ss_pred HHHHHHHhcCCC---CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHH
Confidence 556666555422 56799999999999999999996 89999999999986443
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.11 E-value=8.1e-06 Score=79.08 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=36.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----EEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI----SQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~----V~GnD~S~~ML~~s~ 228 (412)
++.+|||+|||+|.++..|+++|.. |+|+|+|..|+..++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~ 85 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLE 85 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHH
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHH
Confidence 5679999999999999999999988 999999999997655
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=4.1e-05 Score=77.76 Aligned_cols=98 Identities=22% Similarity=0.254 Sum_probs=59.2
Q ss_pred eEEecccccccCCCCCCCCccEEEEec---ccCChh-h-----------------------H-HHH-----------HHH
Q 015160 279 SMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAH-N-----------------------I-VEY-----------IEI 319 (412)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~-N-----------------------i-~~y-----------l~~ 319 (412)
-|+.|.-..+|...++.++||+|++++ +|...+ . + ..| |+.
T Consensus 131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345554445555445679999999886 333221 1 2 133 888
Q ss_pred HHHhccCCcEEEE--ecC--c--------chh--hhhc--cCC--------CCCcccCCCHHHHHHHHHhC-CCEEEEEe
Q 015160 320 ISRILKDGGVWIN--LGP--L--------LYH--FADL--YGQ--------EDEMSIELSLEDVKRVALHY-GFEFEKEK 374 (412)
Q Consensus 320 I~~~LKPGG~wIN--~GP--L--------lyh--~~~~--~g~--------~~~~~ieLS~EEL~~ll~~~-GFeii~e~ 374 (412)
.++.|||||.++- .|. . +.. +.+. .|. -....+..|.+|++.++++. ||++.+.+
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999984 221 1 100 1110 111 00124568999999999987 59999865
Q ss_pred ec
Q 015160 375 TI 376 (412)
Q Consensus 375 ~i 376 (412)
..
T Consensus 291 ~~ 292 (384)
T 2efj_A 291 TF 292 (384)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-05 Score=78.59 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|-|.|..+.++.+. + -.|+.+|+...++.+++.-+-. +.. + ..
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~------------~~~--~--~~----------- 135 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPN------------HNA--G--SY----------- 135 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHH------------HHT--T--GG-----------
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcc------------ccc--c--cc-----------
Confidence 4569999999999999999987 3 5799999999999777632210 000 0 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|.+++-. ...++||+|+.=.+- ..+..+ .++++.++++|||||+++.
T Consensus 136 -------~dpRv~v~~~Dg~~~l~--~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 136 -------DDPRFKLVIDDGVNFVN--QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp -------GCTTEEEEESCTTTTTS--CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred -------CCCcEEEEechHHHHHh--hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 01348889999988654 346789999865431 112112 3789999999999999996
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.3e-06 Score=80.34 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=36.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+|||+|||+|.++..|+++ |..|+|+|.|..|+..|+
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~ 67 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAE 67 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 5679999999999999999998 589999999999998776
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.3e-06 Score=84.30 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||++||+|.++.++|++ | -.|++||++..++..++.-+.. +
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~----N--------------------------- 100 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL----N--------------------------- 100 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH----T---------------------------
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH----h---------------------------
Confidence 4569999999999999999995 5 4799999999998766522211 0
Q ss_pred CCCCCCCCCCCc-eeEEecccccccC-CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 266 DIHPASAGITEG-FSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 266 Dv~p~~~~~~~~-~s~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...++ +.++.+|..++.. . ..+.||+|+. |.-....++++.+.++|||||+++
T Consensus 101 -------gl~~~~v~v~~~Da~~~l~~~--~~~~fD~V~l----DP~g~~~~~l~~a~~~Lk~gGll~ 155 (392)
T 3axs_A 101 -------NIPEDRYEIHGMEANFFLRKE--WGFGFDYVDL----DPFGTPVPFIESVALSMKRGGILS 155 (392)
T ss_dssp -------TCCGGGEEEECSCHHHHHHSC--CSSCEEEEEE----CCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred -------CCCCceEEEEeCCHHHHHHHh--hCCCCcEEEE----CCCcCHHHHHHHHHHHhCCCCEEE
Confidence 01122 6788899877532 1 1357999964 442223478999999999999776
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=1e-05 Score=77.46 Aligned_cols=147 Identities=17% Similarity=0.098 Sum_probs=81.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-------C-------CeEEEEeCCH---HHHHHHHhhh----hccccccccccccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-------G-------FISQGNEFSY---YMMICSSFIL----NHTETAGEWNIYPWIH 247 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-------G-------f~V~GnD~S~---~ML~~s~fil----n~~~~~~~~~I~P~i~ 247 (412)
+..+||++|+|+|..+..+++. + -.++++|..+ .||..+.... ..+++ -+..+|-
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~--l~~~w~~-- 135 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQ--LQAQWPM-- 135 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHH--HHHTCCC--
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHH--HHHhccc--
Confidence 4579999999999988776542 2 3788999654 7776432100 00000 0000110
Q ss_pred ccCCCCCcccCccccccCCCCCCC-CCCCCceeEEecccccccCC-CC-CCCCccEEEEecc-cCChhh--HHHHHHHHH
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSD-PS-QVGAWDAVVTCFF-IDTAHN--IVEYIEIIS 321 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~-~~~~~~~s~~~GDF~ely~~-~~-~~~~fD~VvT~FF-IDta~N--i~~yl~~I~ 321 (412)
.+|.+.-.. .....++.++.||+.++... +. ....||+|+---| -...+. -.++|+.++
T Consensus 136 ---------------~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~ 200 (257)
T 2qy6_A 136 ---------------PLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMA 200 (257)
T ss_dssp ---------------SCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHH
T ss_pred ---------------cccchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHH
Confidence 001000000 00113478999999885321 10 0127898843211 111111 247999999
Q ss_pred HhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 322 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 322 ~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++|||||+++.+.. ...+++.+..+||++.+..
T Consensus 201 ~~L~pGG~l~tysa--------------------a~~vrr~L~~aGF~v~~~~ 233 (257)
T 2qy6_A 201 RLARPGGTLATFTS--------------------AGFVRRGLQEAGFTMQKRK 233 (257)
T ss_dssp HHEEEEEEEEESCC--------------------BHHHHHHHHHHTEEEEEEC
T ss_pred HHcCCCcEEEEEeC--------------------CHHHHHHHHHCCCEEEeCC
Confidence 99999999996221 1357888889999987654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.7e-05 Score=79.90 Aligned_cols=148 Identities=15% Similarity=0.096 Sum_probs=89.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc------------------CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL------------------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~------------------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
...+|+|+||++|..++.++.. .++|..||+..-+....-..|. ++.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~-----------~~~---- 115 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-----------IEN---- 115 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTT-----------TSC----
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcc-----------hhc----
Confidence 4578999999999988776554 3678889988877532221110 000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCCh-----------------
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTA----------------- 310 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta----------------- 310 (412)
.. .+--|+.|.-..+|...++.+++|+|++.+ +|...
T Consensus 116 ----~~-------------------~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~ 172 (359)
T 1m6e_X 116 ----DV-------------------DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTC 172 (359)
T ss_dssp ----SC-------------------TTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSS
T ss_pred ----cc-------------------CCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCC
Confidence 00 011344444334454445579999999886 33221
Q ss_pred -------------hhHHHHHHHHHHhccCCcEEEE--e-----cC------cchh-hhhc------cCC--C------CC
Q 015160 311 -------------HNIVEYIEIISRILKDGGVWIN--L-----GP------LLYH-FADL------YGQ--E------DE 349 (412)
Q Consensus 311 -------------~Ni~~yl~~I~~~LKPGG~wIN--~-----GP------Llyh-~~~~------~g~--~------~~ 349 (412)
.|...+|+..++.|||||.+|- + +| .+|. .... .|. . ..
T Consensus 173 p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~ 252 (359)
T 1m6e_X 173 PQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNI 252 (359)
T ss_dssp CCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCC
Confidence 2455669999999999999983 1 22 1231 1110 121 0 01
Q ss_pred cccCCCHHHHHHHHHhC-CCEEEEEe
Q 015160 350 MSIELSLEDVKRVALHY-GFEFEKEK 374 (412)
Q Consensus 350 ~~ieLS~EEL~~ll~~~-GFeii~e~ 374 (412)
..+..|.+|++.++++. +|++.+.+
T Consensus 253 P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 253 PQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp CCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred CccCCCHHHHHHHHHHcCCceEEEEE
Confidence 24567999999999988 55888754
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1e-05 Score=87.85 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=69.8
Q ss_pred CCCeEEEecCCCChhHHHH--HH--cC-----------CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEI--SH--LG-----------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eL--A~--~G-----------f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
....|||+|||+|-|+... |. .| ..|.|+|-|.......+.+.. +.
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-----Ng-------------- 469 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-----RT-------------- 469 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-----HT--------------
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-----cC--------------
Confidence 3467999999999996432 22 23 389999999855543332110 11
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCC--CCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCc
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~--~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
..+.+.++.||++++..+ ....++.|+||+- +|++..- ..+.|..+.+.|||||
T Consensus 470 --------------------~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL-~pe~Ld~v~r~Lkp~G 528 (745)
T 3ua3_A 470 --------------------WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNEL-SPECLDGVTGFLKPTT 528 (745)
T ss_dssp --------------------TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGS-HHHHHHTTGGGSCTTC
T ss_pred --------------------CCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhc-cHHHHHHHHHhCCCCc
Confidence 112378899999997531 0013789999986 4776552 4578888889999999
Q ss_pred EEE
Q 015160 329 VWI 331 (412)
Q Consensus 329 ~wI 331 (412)
+.|
T Consensus 529 i~i 531 (745)
T 3ua3_A 529 ISI 531 (745)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.01 E-value=4e-06 Score=80.59 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=64.8
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
.+|||+|||+|+.+++||.+|..|+|+|.|..|...++..+..+.... .+...
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~-------------------~~~~~-------- 142 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA-------------------EIGGW-------- 142 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCT-------------------TTHHH--------
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhH-------------------hhhhh--------
Confidence 689999999999999999999999999999998766654443321100 00000
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChhhHHHHHHHHHHhccCCc
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
...++.++.+|..++-. ...+.||+|+.- .|=..... ..++...++|++.|
T Consensus 143 ---l~~~i~~~~~D~~~~L~--~~~~~fDvV~lDP~y~~~~~s--aavkk~~~~lr~l~ 194 (258)
T 2oyr_A 143 ---LQERLQLIHASSLTALT--DITPRPQVVYLDPMFPHKQKS--ALVKKEMRVFQSLV 194 (258)
T ss_dssp ---HHHHEEEEESCHHHHST--TCSSCCSEEEECCCCCCCCC-------HHHHHHHHHS
T ss_pred ---hhcCEEEEECCHHHHHH--hCcccCCEEEEcCCCCCcccc--hHHHHHHHHHHHhh
Confidence 01247899999887532 122479999764 23222111 34556666776644
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=82.77 Aligned_cols=40 Identities=10% Similarity=-0.073 Sum_probs=37.5
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~f 229 (412)
+.+|||+|||+|..+..||+.|..|+|+|+|..|+..++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~ 133 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARH 133 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 5799999999999999999999999999999999988773
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=70.88 Aligned_cols=46 Identities=9% Similarity=-0.176 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCC-hhHHHHHH-cCCeEEEEeCCHHH
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLG-RLALEISH-LGFISQGNEFSYYM 223 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlG-RLa~eLA~-~Gf~V~GnD~S~~M 223 (412)
.|.++|.+.+. .+.+||++|||.| |.|..||+ .|++|+++|++...
T Consensus 24 ~LaeYI~~~~~-----~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A 71 (153)
T 2k4m_A 24 DLAVYIIRCSG-----PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH 71 (153)
T ss_dssp HHHHHHHHHSC-----SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS
T ss_pred HHHHHHHhcCC-----CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccc
Confidence 37777777764 3469999999999 89999997 99999999999854
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.1e-05 Score=83.64 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-----f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~ 263 (412)
++.+|||||||+|.+...++++. ..+.|+|++..++..|+..+|..... .+.++.
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~--------------------LlhGi~ 380 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ--------------------LVSSNN 380 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT--------------------TCBTTB
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh--------------------hhcCCC
Confidence 56799999999999999999864 46899999999998773223211000 000110
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC--Chh------------------------h-HH
Q 015160 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID--TAH------------------------N-IV 314 (412)
Q Consensus 264 iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID--ta~------------------------N-i~ 314 (412)
...+..+|+.+... ...+.||+||++ |... ... | -.
T Consensus 381 -------------~~~I~~dD~L~~~~--~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~ 445 (878)
T 3s1s_A 381 -------------APTITGEDVCSLNP--EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEA 445 (878)
T ss_dssp -------------CCEEECCCGGGCCG--GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHH
T ss_pred -------------cceEEecchhcccc--cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHH
Confidence 12345566665321 124689999997 4221 110 1 22
Q ss_pred HHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 315 EYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 315 ~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.+++.+.++|||||.+.-+-|--|-+.. .-....+++.|.+. +.+..
T Consensus 446 aFIe~Al~lLKpGGrLAfIlP~s~Lf~s----------g~~~kkLRk~LLe~-~~I~a 492 (878)
T 3s1s_A 446 LFLELVTELVQDGTVISAIMPKQYLTAQ----------GNESKAFREFLVGN-FGLEH 492 (878)
T ss_dssp HHHHHHHHHSCTTCEEEEEEETHHHHCC----------SHHHHHHHHHHTTT-TCEEE
T ss_pred HHHHHHHHhcCCCcEEEEEEChHHhccC----------ChHHHHHHHHHHhC-CCeEE
Confidence 3678889999999999876664332211 01257788877653 44443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.86 E-value=7.3e-05 Score=73.29 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=35.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+|||+|||+|..+..||.+ +-.|+|+|+|..|+..++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~ 144 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 144 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 5679999999999999999985 258999999999997665
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00041 Score=64.55 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=67.1
Q ss_pred CCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
..+||+.|| |.-+..+|+. |-.|+.+|.+..+...++-.+..+.-
T Consensus 31 a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~-------------------------------- 76 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPP-------------------------------- 76 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCC--------------------------------
T ss_pred CCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------------------------
Confidence 458999998 4788888887 78999999999998777644432100
Q ss_pred CCCCCCCCceeEEecccccc-----------------cC-----CCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 269 PASAGITEGFSMCGGDFVEV-----------------YS-----DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~el-----------------y~-----~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
....++.+..||..+. |. . ...++||+| |||-.. ...|+..+.+.|||
T Consensus 77 ----~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~-~~~~~fDlI----fIDg~k-~~~~~~~~l~~l~~ 146 (202)
T 3cvo_A 77 ----AEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRT-EGFRHPDVV----LVDGRF-RVGCALATAFSITR 146 (202)
T ss_dssp ----CTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGC-TTCCCCSEE----EECSSS-HHHHHHHHHHHCSS
T ss_pred ----CCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhcc-ccCCCCCEE----EEeCCC-chhHHHHHHHhcCC
Confidence 0012355666665432 10 0 013689998 577543 34888888899999
Q ss_pred CcEEEE
Q 015160 327 GGVWIN 332 (412)
Q Consensus 327 GG~wIN 332 (412)
||++|-
T Consensus 147 GG~Iv~ 152 (202)
T 3cvo_A 147 PVTLLF 152 (202)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 999983
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0001 Score=74.82 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+||++|-|.|..+.++.+..- .|+.+|+.+.++.+++--+ |.+... .. .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yf------------p~~~~~----~~-------d---- 257 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYM------------RKTCGD----VL-------D---- 257 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHC------------CC--------CC-------S----
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhc------------hhhhhh----hh-------c----
Confidence 457999999999999999998754 6999999999997766211 111000 00 0
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEeccc---CC-----hhhH--HHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFI---DT-----AHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~FFI---Dt-----a~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
.....++.++.+|.+++-.. ....++||+|+.=.|- .+ +..+ .++++.++++|||||+++.
T Consensus 258 ----~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 258 ----NLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp ----SSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ----cccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 01123478889998764310 0123689999876542 11 1112 4678999999999999996
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0002 Score=69.08 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=43.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fil 231 (412)
+++.|.+.+. .++..||||+||+|.++..++++|..+.|+|++..|+..|+--+
T Consensus 224 l~~~~i~~~~----~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 224 LAERLVRMFS----FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp HHHHHHHHHC----CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 4455544443 25679999999999999999999999999999999998777443
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00052 Score=66.90 Aligned_cols=115 Identities=8% Similarity=-0.015 Sum_probs=68.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~ 247 (412)
+.-.+++..++.+- ++..+|||+|||.|..+...+++ |- .|.|+|++..|.. + |
T Consensus 59 aA~KL~ei~ek~~l----~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~----------~-------p--- 114 (277)
T 3evf_A 59 GTAKLRWFHERGYV----KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHE----------K-------P--- 114 (277)
T ss_dssp HHHHHHHHHHTTSS----CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCC----------C-------C---
T ss_pred HHHHHHHHHHhCCC----CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcc----------c-------c---
Confidence 33346666666321 25568999999999999988876 54 5789998865410 0 0
Q ss_pred ccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh------hHHHHHHHHH
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH------NIVEYIEIIS 321 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~------Ni~~yl~~I~ 321 (412)
+|.. ....++....+++ ++.. ...+.||+|++-...++.. .....|+.+.
T Consensus 115 ----------------i~~~-----~~g~~ii~~~~~~-dv~~--l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~ 170 (277)
T 3evf_A 115 ----------------MNVQ-----SLGWNIITFKDKT-DIHR--LEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVE 170 (277)
T ss_dssp ----------------CCCC-----BTTGGGEEEECSC-CTTT--SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred ----------------cccC-----cCCCCeEEEeccc-eehh--cCCCCccEEEecCccCcCchHHHHHHHHHHHHHHH
Confidence 0000 0001233344443 2222 1247899999865333221 1123467788
Q ss_pred HhccCC-cEEEE
Q 015160 322 RILKDG-GVWIN 332 (412)
Q Consensus 322 ~~LKPG-G~wIN 332 (412)
++|||| |.||-
T Consensus 171 ~~LkpG~G~FV~ 182 (277)
T 3evf_A 171 KWLACGVDNFCV 182 (277)
T ss_dssp HHHTTCCSEEEE
T ss_pred HHhCCCCCeEEE
Confidence 999999 99995
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0011 Score=64.66 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=86.5
Q ss_pred HHHHHHhcCccc----ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-------CCeEEEEeC
Q 015160 151 IIRNIVRDWAAE----GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-------GFISQGNEF 219 (412)
Q Consensus 151 ~L~q~~RDWS~e----G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-------Gf~V~GnD~ 219 (412)
.++.+-+||... ...+|-.....+++.+...- .+.+||++|+..|+-+..+|.. +-.|+++|.
T Consensus 70 ~~r~~g~~~~~~~~tmv~~~r~~~L~~l~~~v~~~~------~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt 143 (282)
T 2wk1_A 70 EVRNEGRDWPANAHTMIGIKRLENIRQCVEDVIGNN------VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS 143 (282)
T ss_dssp HHHHTTCSCBSSCSCSSHHHHHHHHHHHHHHHHHTT------CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred HHHhccccCCcccccccCHHHHHHHHHHHHHHHhcC------CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence 477888999653 35677655555555555421 3568999999999988887643 567999996
Q ss_pred CHHHHHHHHhhhhcccccccccccccccccCC-CCCcccCccccccCCCCCCCCCC-CCceeEEecccccccCCCCCCCC
Q 015160 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCN-SLSDSDQLRPVSIPDIHPASAGI-TEGFSMCGGDFVEVYSDPSQVGA 297 (412)
Q Consensus 220 S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn-~~s~~~qlr~v~iPDv~p~~~~~-~~~~s~~~GDF~ely~~~~~~~~ 297 (412)
-..+-..... ..... ....+ +.+.. ......+.|. .+. .... .+++.++.|||.+.-. ....++
T Consensus 144 feG~pe~~~~--~~~~d-~~~~~----~~~~~~~~~~~~~ar~-n~~-----~~gl~~~~I~li~Gda~etL~-~~~~~~ 209 (282)
T 2wk1_A 144 FQGIPDVGED--GYAGD-RKMAL----HRRNSVLAVSEEEVRR-NFR-----NYDLLDEQVRFLPGWFKDTLP-TAPIDT 209 (282)
T ss_dssp SSCSCCCCTT--SCHHH-HHHCG----GGGHHHHCCCHHHHHH-HHH-----HTTCCSTTEEEEESCHHHHST-TCCCCC
T ss_pred CCCCCccccc--ccccc-ccccc----ccccccchhHHHHHHH-HHH-----HcCCCcCceEEEEeCHHHHHh-hCCCCC
Confidence 4322000000 00000 00000 00000 0000000000 000 0011 2458999999988542 112356
Q ss_pred ccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEE
Q 015160 298 WDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 298 fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
||+| |||.. .+..+||+.++..|+|||++|-
T Consensus 210 ~d~v----fIDaD~y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 210 LAVL----RMDGDLYESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp EEEE----EECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEE----EEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence 7766 67754 3567899999999999999984
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0015 Score=66.24 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=82.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+||+.|.-+..|+++|-.|+|+|... |-- .+.
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~----~l~------------------------------------ 249 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQ----SLM------------------------------------ 249 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCH----HHH------------------------------------
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cCh----hhc------------------------------------
Confidence 678999999999999999999999999999874 310 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC---cEEEEe-cCcchhhhhcc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG---GVWINL-GPLLYHFADLY 344 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPG---G~wIN~-GPLlyh~~~~~ 344 (412)
...++.++++|..++.. ..+.+|+||+ |-+.+....++.+.+.|..| +..+|+ -|+...++
T Consensus 250 -----~~~~V~~~~~d~~~~~~---~~~~~D~vvs----Dm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~--- 314 (375)
T 4auk_A 250 -----DTGQVTWLREDGFKFRP---TRSNISWMVC----DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYE--- 314 (375)
T ss_dssp -----TTTCEEEECSCTTTCCC---CSSCEEEEEE----CCSSCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHH---
T ss_pred -----cCCCeEEEeCccccccC---CCCCcCEEEE----cCCCChHHhHHHHHHHHhccccceEEEEEEecccchHH---
Confidence 01237788999887543 2468999987 77777777777777777665 555553 12211111
Q ss_pred CCCCCcccCCCHHHHHHHHHhCCCEEE
Q 015160 345 GQEDEMSIELSLEDVKRVALHYGFEFE 371 (412)
Q Consensus 345 g~~~~~~ieLS~EEL~~ll~~~GFeii 371 (412)
.+.--.+.+...+...||...
T Consensus 315 ------~l~~~~~~i~~~l~~~g~~~~ 335 (375)
T 4auk_A 315 ------EVSHNLAYIQAQLDEHGINAQ 335 (375)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCEE
T ss_pred ------HHHHHHHHHHHHHHhcCcchh
Confidence 122245677778888898753
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0032 Score=66.01 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=31.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---------------Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||||+||+|.+.....+. -..+.|.|+...|...|+
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~ 271 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ 271 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence 5669999999999997665432 246899999999987665
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=64.68 Aligned_cols=41 Identities=12% Similarity=-0.148 Sum_probs=37.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~f 229 (412)
++..+||.+||.|.++..|++++..|+|+|.++.|+..++-
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 56799999999999999999998899999999999977663
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.99 E-value=0.025 Score=55.75 Aligned_cols=149 Identities=21% Similarity=0.202 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.+|||+-||.|.+...+.+.|+. |.++|++...+.+.+ .|+.. .
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~--~N~~~----------~--------------------- 56 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYE--MNFGE----------K--------------------- 56 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHH--HHHSC----------C---------------------
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHH--HHcCC----------C---------------------
Confidence 3579999999999999999999997 568999998875544 22210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-Ee
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NL 333 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-------------FIDta~Ni~~yl~~I~~~LKPGG~wI-N~ 333 (412)
. .+|+.++.. ..-..+|+|+..+ +-|.-..+...+-.+.+.+||--+++ |+
T Consensus 57 ----------~---~~Di~~~~~--~~~~~~D~l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV 121 (327)
T 2c7p_A 57 ----------P---EGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENV 121 (327)
T ss_dssp ----------C---BSCGGGSCG--GGSCCCSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEE
T ss_pred ----------C---cCCHHHcCH--hhCCCCCEEEECCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCc
Confidence 0 123333211 0011345555432 12433334443444445679976555 44
Q ss_pred cCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 015160 334 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 334 GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
--++-+- -.-..+.+...+++.|+.+...-.....|+.-. .-...|+|+.++
T Consensus 122 ~gl~~~~-----------~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ------~R~R~~iv~~~~ 173 (327)
T 2c7p_A 122 KNFASHD-----------NGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQ------KRERIYMICFRN 173 (327)
T ss_dssp GGGGTGG-----------GGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSB------CCEEEEEEEEBG
T ss_pred HHHHhcc-----------ccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCc------cceEEEEEEEeC
Confidence 3333211 012467888999999998765444445564321 235788888876
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0038 Score=61.01 Aligned_cols=72 Identities=10% Similarity=-0.037 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCC
Q 015160 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFS 220 (412)
Q Consensus 143 ~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S 220 (412)
.|...+|..|+.=...+ .=|..+.-.+++..++. .- .+..+|||+|||.|..+...+++ |. .|.|+|++
T Consensus 53 ~~r~~ar~~l~~~~~~g-----~YrSRAAfKL~ei~eK~-~L---k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG 123 (282)
T 3gcz_A 53 VDRTHARDSLENGIQNG-----IAVSRGSAKLRWMEERG-YV---KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLG 123 (282)
T ss_dssp ECCHHHHHHHHHTCCSS-----BCSSTHHHHHHHHHHTT-SC---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred ccHHHHHHHHhcCCcCC-----CEecHHHHHHHHHHHhc-CC---CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEec
Confidence 45566666665532221 11223333466666653 21 25669999999999999988854 54 58899999
Q ss_pred HHH
Q 015160 221 YYM 223 (412)
Q Consensus 221 ~~M 223 (412)
..|
T Consensus 124 ~d~ 126 (282)
T 3gcz_A 124 VQG 126 (282)
T ss_dssp CTT
T ss_pred cCc
Confidence 865
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0034 Score=61.79 Aligned_cols=74 Identities=12% Similarity=-0.012 Sum_probs=47.1
Q ss_pred CcchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeC
Q 015160 142 LADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEF 219 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~ 219 (412)
..|...+|..|+.=...= ..=|..++-.+++..++.+ .+++.+|||+||+.|..+..++++ |. .|.|+|+
T Consensus 42 e~dr~~ar~~l~~~~~~~----g~yrSRaa~KL~ei~ek~l----~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdl 113 (300)
T 3eld_A 42 EVDRTAARRYLKEGRTDV----GISVSRGAAKIRWLHERGY----LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTL 113 (300)
T ss_dssp EECCHHHHHHHHHTCSSS----CCCSSTTHHHHHHHHHHTS----CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECC
T ss_pred cccHHHHHHHHHcCCccC----CCccchHHHHHHHHHHhCC----CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEe
Confidence 355566776666532110 1112333344666666522 126789999999999999999975 54 5889999
Q ss_pred CHHH
Q 015160 220 SYYM 223 (412)
Q Consensus 220 S~~M 223 (412)
+..|
T Consensus 114 g~~~ 117 (300)
T 3eld_A 114 GIEG 117 (300)
T ss_dssp CCTT
T ss_pred cccc
Confidence 8754
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0044 Score=60.06 Aligned_cols=107 Identities=16% Similarity=0.054 Sum_probs=63.8
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHH--HHHHHHhhhhcccccccccccccccccC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYY--MMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~--ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
|.+|.+.+ - -+++.+|||+||+-|.-+...|++ |- .|.|..+... ++ |.
T Consensus 62 L~EIdeK~-l--ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~-------------------P~----- 114 (269)
T 2px2_A 62 LRWLVERR-F--VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEE-------------------PM----- 114 (269)
T ss_dssp HHHHHHTT-S--CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCC-------------------CC-----
T ss_pred HHHHHHcC-C--CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccC-------------------CC-----
Confidence 44455443 1 247889999999999999998886 22 3455544432 10 00
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEec-ccccccCCCCCCCCccEEEEec-------ccCChhhHHHHHHHHHH
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGG-DFVEVYSDPSQVGAWDAVVTCF-------FIDTAHNIVEYIEIISR 322 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~G-DF~ely~~~~~~~~fD~VvT~F-------FIDta~Ni~~yl~~I~~ 322 (412)
.++. |.+ +=+.|.+| ||+++. ...+|+|++=. .+|.+.-+. .|+-..+
T Consensus 115 ---------~~~~-~Gv--------~~i~~~~G~Df~~~~-----~~~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~ 170 (269)
T 2px2_A 115 ---------LMQS-YGW--------NIVTMKSGVDVFYKP-----SEISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSD 170 (269)
T ss_dssp ---------CCCS-TTG--------GGEEEECSCCGGGSC-----CCCCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHH
T ss_pred ---------cccC-CCc--------eEEEeeccCCccCCC-----CCCCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHH
Confidence 0000 000 01455668 999853 25799999743 344443332 5666779
Q ss_pred hccCCc-EEEE
Q 015160 323 ILKDGG-VWIN 332 (412)
Q Consensus 323 ~LKPGG-~wIN 332 (412)
+||||| .|+-
T Consensus 171 ~Lk~gG~~Fvv 181 (269)
T 2px2_A 171 WLSRGPKEFCI 181 (269)
T ss_dssp HHTTCCSEEEE
T ss_pred HhhcCCcEEEE
Confidence 999999 7874
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.044 Score=54.08 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=33.7
Q ss_pred CCeEEEecCCCChhHHHHHHcC--Ce-EEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FI-SQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~-V~GnD~S~~ML~~s~ 228 (412)
..+|||+-||.|.+...+.+.| +. |.++|++...+.+.+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~ 43 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYK 43 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHH
Confidence 3589999999999999999999 54 789999998876544
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.094 Score=50.39 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=90.2
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
.+|||+=||.|.+..-|-+.||++. ++|+......+.+ .|+ |
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~--~N~----------~------------------------- 43 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYE--SNH----------S------------------------- 43 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHH--HHC----------C-------------------------
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHH--HHC----------C-------------------------
Confidence 3799999999999999999999865 9999998765433 222 1
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-EecC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NLGP 335 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-------------FIDta~Ni~~yl~~I~~~LKPGG~wI-N~GP 335 (412)
-.++.+|+.++.. ..-...|+++-.+ +-|.-..+...+-.|.+.+||.-+++ |+--
T Consensus 44 --------~~~~~~DI~~i~~--~~~~~~D~l~ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~g 113 (331)
T 3ubt_Y 44 --------AKLIKGDISKISS--DEFPKCDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKG 113 (331)
T ss_dssp --------SEEEESCGGGCCG--GGSCCCSEEECCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCG
T ss_pred --------CCcccCChhhCCH--hhCCcccEEEecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeecc
Confidence 0123455555432 1123456665432 22333345544445666789976666 4332
Q ss_pred cchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcC
Q 015160 336 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKS 403 (412)
Q Consensus 336 Llyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~ 403 (412)
++.+- -.-..+++...+++.|+.+...-.....|+.-. .-+.+|+|+.|+.
T Consensus 114 l~~~~-----------~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ------~R~Rvfivg~r~~ 164 (331)
T 3ubt_Y 114 MMAQR-----------HNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQ------DRKRVFYIGFRKE 164 (331)
T ss_dssp GGGCT-----------TSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSB------CCEEEEEEEEEGG
T ss_pred ccccc-----------ccchhhhhhhhhccCCcEEEEEecccccCCCCc------ccceEEEEEEcCC
Confidence 33211 012467888888999998865544445564322 2257888998864
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.046 Score=54.89 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=33.1
Q ss_pred CeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015160 191 PACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (412)
.+|||+-||.|.++..|.+.||.+ .++|++...+.+.+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~ 41 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHA 41 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 589999999999999999999985 59999998865443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.011 Score=55.84 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.|-+.+. .++..||||.||+|..+...+++|..+.|+|++..++..|.
T Consensus 201 l~~~~i~~~~----~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 4444444432 25679999999999999999999999999999999987666
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.03 Score=56.15 Aligned_cols=108 Identities=16% Similarity=0.059 Sum_probs=69.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||..||.|.=+..||..|- .|+++|+|..=+...+-.+.+..- +.+
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~-----------------------~~~---- 200 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVP-----------------------EEI---- 200 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSC-----------------------TTT----
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhh-----------------------hhh----
Confidence 677999999999999999999876 599999999876544332321100 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec--------------ccCChhhH-------HHHHHHHHH
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF--------------FIDTAHNI-------VEYIEIISR 322 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F--------------FIDta~Ni-------~~yl~~I~~ 322 (412)
....++.....|.+.+.. ...+.||.|+. |- .-.+..++ .+.|+...+
T Consensus 201 ------~~~~~v~v~~~D~~~~~~--~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~ 272 (359)
T 4fzv_A 201 ------RDGNQVRVTSWDGRKWGE--LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLL 272 (359)
T ss_dssp ------TTSSSEEEECCCGGGHHH--HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHH
T ss_pred ------ccCCceEEEeCchhhcch--hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 011246677788776532 12478999873 10 11111222 246788889
Q ss_pred hccCCcEEE
Q 015160 323 ILKDGGVWI 331 (412)
Q Consensus 323 ~LKPGG~wI 331 (412)
+|||||++|
T Consensus 273 ~lkpGG~LV 281 (359)
T 4fzv_A 273 ATKPGGHVV 281 (359)
T ss_dssp TEEEEEEEE
T ss_pred cCCCCcEEE
Confidence 999999998
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.029 Score=55.55 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=54.4
Q ss_pred EEecccccccCCCCCCCCccEEEEecc------cCCh----hhHHHH-HHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 015160 280 MCGGDFVEVYSDPSQVGAWDAVVTCFF------IDTA----HNIVEY-IEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (412)
Q Consensus 280 ~~~GDF~ely~~~~~~~~fD~VvT~FF------IDta----~Ni~~y-l~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~ 348 (412)
++.||+.+++. .+.||+|++=.. .|.. ..+.++ ++-+.+.|||||.|+-- .|+.
T Consensus 156 ~IqGD~~~~~~----~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK-----VFQG------ 220 (344)
T 3r24_A 156 TLIGDCATVHT----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK-----ITEH------ 220 (344)
T ss_dssp EEESCGGGEEE----SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE-----ECSS------
T ss_pred EEEcccccccc----CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE-----EecC------
Confidence 38899887664 478999997542 2322 234444 55566889999999851 1221
Q ss_pred CcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 015160 349 EMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
+- .+++.++. + -|+-++.....+. .. -.-+|+|++..
T Consensus 221 --sg---~~~L~~lr-k-~F~~VK~fK~ASR-a~---------SsEvYLVG~gf 257 (344)
T 3r24_A 221 --SW---NADLYKLM-G-HFSWWTAFVTNVN-AS---------SSEAFLIGANY 257 (344)
T ss_dssp --SC---CHHHHHHH-T-TEEEEEEEEEGGG-TT---------SSCEEEEEEEE
T ss_pred --CC---HHHHHHHH-h-hCCeEEEECCCCC-CC---------CeeEEEEeeec
Confidence 11 25566666 3 6888775532122 11 14678888664
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.12 Score=51.00 Aligned_cols=40 Identities=10% Similarity=-0.049 Sum_probs=33.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eE--EEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--IS--QGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V--~GnD~S~~ML~~s~ 228 (412)
...+|||+-||.|.+..-|.+.|+ .+ .++|+......+.+
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~ 52 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYS 52 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHH
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHH
Confidence 457999999999999999999995 54 59999998875443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.24 Score=48.94 Aligned_cols=158 Identities=11% Similarity=0.057 Sum_probs=86.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+...|+.+|||+...++.|... +..+.-+|+ +.++..-+.++........ .+. . .. .-|.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~-~l~-------~----~~-----~~~~ 158 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRI-SLG-------L----SK-----EDTA 158 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHH-HHT-------C----CS-----SCCC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhh-hcc-------c----cc-----cccc
Confidence 3468999999999999999875 456667777 5555433333322100000 000 0 00 0000
Q ss_pred CCCCCCCCCCceeEEeccccccc-------CCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEe---
Q 015160 267 IHPASAGITEGFSMCGGDFVEVY-------SDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINL--- 333 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely-------~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wIN~--- 333 (412)
.... .....+..++.+|+++.. ..+ ..+...++++- .|++... +.+.|+.|.+.+ |||.+|++
T Consensus 159 ~~~~-~~~~~~~~~v~~DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~~-~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 159 KSPF-LIDQGRYKLAACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNNE-SQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp CTTE-EEECSSEEEEECCTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHHH-HHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred cccc-ccCCCceEEEecCCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHHH-HHHHHHHHHhhC-CCcEEEEEecc
Confidence 0000 001245889999998731 111 11334444432 4677554 778899999887 88988864
Q ss_pred cC----------cchhhhhccCCCCCccc--CCCHHHHHHHHHhCCCE
Q 015160 334 GP----------LLYHFADLYGQEDEMSI--ELSLEDVKRVALHYGFE 369 (412)
Q Consensus 334 GP----------Llyh~~~~~g~~~~~~i--eLS~EEL~~ll~~~GFe 369 (412)
+| +.+++....| .+-.++ ..+.++.++.+.+.||+
T Consensus 235 ~~~~~~~~fg~~m~~~l~~~rg-~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 235 GGSQPNDRFGAIMQSNLKESRN-LEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp CCCSTTCCHHHHHHHHHHHHHC-CCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred CCCCCcchHHHHHHHHhhcccC-CcccccccCCCHHHHHHHHHHCCCC
Confidence 33 1122322112 121122 25899999999999998
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=58.52 Aligned_cols=72 Identities=24% Similarity=0.427 Sum_probs=51.8
Q ss_pred eeEEecccccccCCCCCCCCccEEEEecccC---ChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCc
Q 015160 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 350 (412)
Q Consensus 278 ~s~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni----~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~ 350 (412)
+.+..||..+.... -...+||+| |+| .+.|. .++|+.|+++|+|||+++. |
T Consensus 168 L~l~~GDa~~~l~~-l~~~~~Da~----flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT-----Y------------ 225 (308)
T 3vyw_A 168 LKVLLGDARKRIKE-VENFKADAV----FHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS-----Y------------ 225 (308)
T ss_dssp EEEEESCHHHHGGG-CCSCCEEEE----EECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE-----S------------
T ss_pred EEEEechHHHHHhh-hcccceeEE----EeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE-----E------------
Confidence 67889998875431 113467877 444 33443 4799999999999999985 2
Q ss_pred ccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 351 SIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 351 ~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-+.-.|++.|.++||++.+..
T Consensus 226 ---taag~VRR~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 226 ---SSSLSVRKSLLTLGFKVGSSR 246 (308)
T ss_dssp ---CCCHHHHHHHHHTTCEEEEEE
T ss_pred ---eCcHHHHHHHHHCCCEEEecC
Confidence 123578899999999998765
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.074 Score=52.57 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=76.1
Q ss_pred CcchHHHHHHHHHHHhc---CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEE
Q 015160 142 LADVDKVRCIIRNIVRD---WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQG 216 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RD---WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~G 216 (412)
..|...++..|+.=.-+ |-+-+ .| .+++.+++ +.- +++.+|||+||++|..+...|.+ |. .|.|
T Consensus 55 Evdr~~ar~~l~~g~~~~g~y~SR~------~~-KL~ei~~~-~~l---~~~~~VlDLGaapGGwsq~~~~~~gv~~V~a 123 (321)
T 3lkz_A 55 EVDRSAAKHARKEGNVTGGHPVSRG------TA-KLRWLVER-RFL---EPVGKVIDLGCGRGGWCYYMATQKRVQEVRG 123 (321)
T ss_dssp EECCHHHHHHHHHTCCSSCCCSSTH------HH-HHHHHHHT-TSC---CCCEEEEEETCTTCHHHHHHTTCTTEEEEEE
T ss_pred eechHHHHHHHhcCcCcCCCccchH------HH-HHHHHHHh-cCC---CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEE
Confidence 46667777777653322 22211 12 24444444 322 25669999999999999866554 65 4899
Q ss_pred EeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEec-ccccccCCCCCC
Q 015160 217 NEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGG-DFVEVYSDPSQV 295 (412)
Q Consensus 217 nD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~G-DF~ely~~~~~~ 295 (412)
+|+-..= + +.|-.. ..+. -+.+.+..+ |+..+..
T Consensus 124 vdvG~~~---------h--------e~P~~~-----------------~ql~------w~lV~~~~~~Dv~~l~~----- 158 (321)
T 3lkz_A 124 YTKGGPG---------H--------EEPQLV-----------------QSYG------WNIVTMKSGVDVFYRPS----- 158 (321)
T ss_dssp ECCCSTT---------S--------CCCCCC-----------------CBTT------GGGEEEECSCCTTSSCC-----
T ss_pred EEcCCCC---------c--------cCcchh-----------------hhcC------CcceEEEeccCHhhCCC-----
Confidence 9988621 0 011000 0000 012677777 7665432
Q ss_pred CCccEEEEec-------ccCChhhHHHHHHHHHHhccCC-cEEEE
Q 015160 296 GAWDAVVTCF-------FIDTAHNIVEYIEIISRILKDG-GVWIN 332 (412)
Q Consensus 296 ~~fD~VvT~F-------FIDta~Ni~~yl~~I~~~LKPG-G~wIN 332 (412)
..+|+|++=. .+|-+. -...|+-+.+.|++| |-|+-
T Consensus 159 ~~~D~ivcDigeSs~~~~ve~~R-tl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 159 ECCDTLLCDIGESSSSAEVEEHR-TIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHH-HHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEECccCCCChhhhhhH-HHHHHHHHHHHhccCCCcEEE
Confidence 5689887533 223222 234677778999998 88874
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.3 Score=48.12 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=31.7
Q ss_pred CeEEEecCCCChhHHHHHHcCC--e-EEEEeCCHHHHHHH
Q 015160 191 PACLVPGAGLGRLALEISHLGF--I-SQGNEFSYYMMICS 227 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf--~-V~GnD~S~~ML~~s 227 (412)
.+|||+=||.|.+..-|.+.|+ . |.++|+......+.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty 43 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVY 43 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHH
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHH
Confidence 5899999999999999999997 5 56999999876543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.024 Score=50.26 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=30.5
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+ |.|+.+..+++ .|+.|.+++.+...+.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~ 77 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE 77 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 6679999994 78888777765 5999999999988764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.029 Score=55.64 Aligned_cols=40 Identities=23% Similarity=0.148 Sum_probs=33.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|||. |.++..+|+ +|. .|.++|.|...+..++
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 678999999986 999999988 598 8999999998875443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.1 Score=50.88 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+|. |.++..||+ +|. .|.++|.|..-+..+
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a 212 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA 212 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 567999999985 888999987 598 899999998766443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.047 Score=53.50 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=33.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|||. |.++..+|+ +|. .|.++|.|..-+..++
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~ 232 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 232 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 677999999986 889999987 598 6999999998775544
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.67 Score=48.16 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHhhCCCCCC---CCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHH
Q 015160 175 LEELDALFPNRSK---ESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICS 227 (412)
Q Consensus 175 l~~L~~~~p~~~~---~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s 227 (412)
++.|+..+|.... +...+|||+=||.|.+..-|.+.||. |.++|+......+.
T Consensus 70 ~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty 126 (482)
T 3me5_A 70 FAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTY 126 (482)
T ss_dssp HHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHH
T ss_pred HHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHH
Confidence 4567777764322 24579999999999999999999998 57999999776543
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.061 Score=52.41 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=33.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+. |.. |.++|.|..-+..++
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 221 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK 221 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 667999999876 8889999875 887 999999998775554
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.13 Score=49.33 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=32.3
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+ |.|+.+..+++ .|+.|.+++.+...+..+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~ 186 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL 186 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 6779999998 88998877766 699999999998776443
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.033 Score=53.84 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+. |+.|.++|.|..-+..++
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 207 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR 207 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 678999999985 9999999884 999999999998775443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.059 Score=53.08 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=32.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+. |+ .|.++|.|..-+..++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 224 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAE 224 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 677999999976 8888888874 98 8999999988765444
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.14 Score=49.64 Aligned_cols=39 Identities=15% Similarity=0.004 Sum_probs=32.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+|. |.++..+|+ +|..|.+++.|..-+..+
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~ 216 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDA 216 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 678999999986 888888887 499999999988766433
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.41 Score=46.08 Aligned_cols=135 Identities=11% Similarity=0.010 Sum_probs=76.2
Q ss_pred CcchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeC
Q 015160 142 LADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEF 219 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~ 219 (412)
..|...+|..|+.=.-.+ +-.-| ..| -|.++.+.+- . +++.+|||+||+.|..+...|.+ |. .|.|+|+
T Consensus 40 Evdr~~ar~~l~~g~~~g---~yrSR-a~~--KL~ei~ek~~-l--~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdv 110 (267)
T 3p8z_A 40 EVDRTEAKEGLKRGETTH---HAVSR-GSA--KLQWFVERNM-V--IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTK 110 (267)
T ss_dssp EEECHHHHHHHHTTCCSS---CCSST-HHH--HHHHHHHTTS-S--CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred EeccHHHHHHHhcCCcCC---Cccch-HHH--HHHHHHHhcC-C--CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEec
Confidence 356666676665433221 11111 122 3444444442 1 36679999999999999866655 54 4889998
Q ss_pred CHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEec-ccccccCCCCCCCCc
Q 015160 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGG-DFVEVYSDPSQVGAW 298 (412)
Q Consensus 220 S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~G-DF~ely~~~~~~~~f 298 (412)
-..= + +.| .... .-.-+.+.|..| |+..+. ...+
T Consensus 111 G~~g---------h--------e~P---------------------~~~~--s~gwn~v~fk~gvDv~~~~-----~~~~ 145 (267)
T 3p8z_A 111 GGPG---------H--------EEP---------------------VPMS--TYGWNIVKLMSGKDVFYLP-----PEKC 145 (267)
T ss_dssp CSTT---------S--------CCC---------------------CCCC--CTTTTSEEEECSCCGGGCC-----CCCC
T ss_pred CCCC---------c--------cCc---------------------chhh--hcCcCceEEEeccceeecC-----Cccc
Confidence 7511 1 011 1110 011234889999 875443 2569
Q ss_pred cEEEEec-------ccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 299 DAVVTCF-------FIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 299 D~VvT~F-------FIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
|.|++=. .+|-+. -...|+-+.+.|++ |-|+-
T Consensus 146 DtllcDIgeSs~~~~vE~~R-tlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESR-TIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHH-HHHHHHHHGGGCSS-CEEEE
T ss_pred cEEEEecCCCCCChhhhhhH-HHHHHHHHHHhccc-CCEEE
Confidence 9998643 233222 23467777899999 66653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.062 Score=52.23 Aligned_cols=40 Identities=13% Similarity=-0.067 Sum_probs=32.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+. |+ .|.++|.+..-+..++
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 208 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL 208 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 677999999986 8888988885 88 7999999987665443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.17 Score=50.25 Aligned_cols=41 Identities=20% Similarity=0.065 Sum_probs=33.3
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|+|. |.++..||+. |+ .|.++|.|..-+..++
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 255 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK 255 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4678999999865 8888888874 99 8999999998775444
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.12 Score=50.85 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+ +|..|.+++.|..-+..++
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~ 235 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK 235 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 678999999984 888888887 5999999999987765443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.33 Score=47.62 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=33.3
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|+| .|.++..+|+. |+ .|.++|.|..-+..++
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~ 235 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK 235 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 367899999997 58899888875 98 7999999987775444
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.24 Score=47.98 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=32.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+ +|+.|.++|.|..-+..++
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 209 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 209 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 567999999885 888888887 5999999999988765443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.071 Score=51.29 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=32.0
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (412)
++.+||+.|+ |.|.++..+|+ .|+.|.+++.|..-+..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~ 189 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRF 189 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6789999998 78999888876 59999999999876543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.36 Score=47.19 Aligned_cols=40 Identities=20% Similarity=0.048 Sum_probs=32.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..||+. |. .|.++|.|..-+..++
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 233 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 677999999874 8888888874 98 7999999987765443
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.11 Score=50.33 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=32.9
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+ |.|.++..+|+ +|+.|.+++.+..-+..+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~ 207 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA 207 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 6779999998 78999888876 699999999998776543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.11 Score=49.92 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=32.2
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (412)
++.+||+.|+ |.|.++..+|+ +|+.|.+++.|..-+..
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~ 195 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6779999997 78999888877 69999999999877643
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.64 E-value=0.11 Score=51.27 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|||. |.++..||+ +|. .|.++|.|..-+..++
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 227 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH
Confidence 677999999976 899999988 488 6999999998775444
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.059 Score=52.11 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=32.8
Q ss_pred CCCCeEEEecCC--CChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 188 ESPPACLVPGAG--LGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 188 ~~~~rVLvPGCG--lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
+++.+||+.|+| .|.++..+|+ +|..|.+++.|..-+..+
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 185 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEEL 185 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 367899999986 8999998887 599999999987765443
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.36 Score=47.14 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=32.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+ +|. .|.++|.|..-+..++
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 234 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 234 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 677999999874 888888887 598 7999999987765443
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.34 Score=46.12 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=31.2
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015160 188 ESPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMIC 226 (412)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (412)
+++.+||+.|+| .|.++..+|+. |+.|.+++ |..-+..
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~ 180 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQAL 180 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHH
Confidence 467899999997 58899999875 99999999 8765543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.22 Score=48.65 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=33.0
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|+|. |.++..+|+. |+.|.+++.|..-+..++
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 230 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAF 230 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH
Confidence 3678999999885 8888888774 999999999987665443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.38 Score=46.87 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=32.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+. |. .|.++|.|..-+..++
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~ 232 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 232 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 677999999875 8888888874 98 7999999987765443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.12 E-value=0.47 Score=46.36 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=32.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+ +|. .|.++|.|..-+..++
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 233 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 233 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 678999999875 888888887 598 7999999987765443
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.21 Score=47.54 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=30.4
Q ss_pred eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015160 192 ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 192 rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (412)
+||+.|+ |.|.++..+|+. |..|.+++-|..-+..++
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~ 188 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK 188 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4999997 789999999875 999999999887664433
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.13 Score=49.86 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf-~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| .|.++..+|+ +|+ .|.+.+.|..-+..+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~ 208 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA 208 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 56789999987 4888888877 599 899999998766443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.076 Score=51.12 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=32.6
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+ |.|.++..+|+ +|..|.+++.+..-+..++
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 190 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK 190 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 6789999994 78999888877 5999999999987765443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.5 Score=46.19 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=31.7
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf-~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| .|.++..||+ +|. .|.++|.|..-+..+
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a 236 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKA 236 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 67899999987 4888888887 498 799999998766543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.16 Score=49.23 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=32.7
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015160 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICS 227 (412)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (412)
+++.+||+.|+ |.|.++..+|+. |+.|.+++.+..-+..+
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 200 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFV 200 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 36789999997 789999888774 99999999988766433
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.15 Score=49.38 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=31.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc---CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL---GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~---Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..+|+. |+.|.+++.|..-+..++
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~ 213 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFAL 213 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH
Confidence 456999999874 8888888874 999999999987765433
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=91.56 E-value=0.21 Score=47.75 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=54.7
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEe--cccCC------------------hhhHHHHHHHHHHhccCCcEEE-EecC
Q 015160 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT------------------AHNIVEYIEIISRILKDGGVWI-NLGP 335 (412)
Q Consensus 277 ~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt------------------a~Ni~~yl~~I~~~LKPGG~wI-N~GP 335 (412)
...++.||.+++... ...++||+|||. |+... ...+.+.++.++++|||||.++ ++|.
T Consensus 21 ~~~i~~gD~~~~l~~-l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 21 VHRLHVGDAREVLAS-FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp CEEEEESCHHHHHTT-SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCEEEECcHHHHHhh-CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 368899999984321 125799999997 44211 0113456778899999999874 4554
Q ss_pred cchhhhhccCCCCCcccCCC-HHHHHHHHHhCCCEEEEE
Q 015160 336 LLYHFADLYGQEDEMSIELS-LEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 336 Llyh~~~~~g~~~~~~ieLS-~EEL~~ll~~~GFeii~e 373 (412)
....... .|. ...++ .+++..++++.||.+..+
T Consensus 100 ~~~~~~~-~g~----~~~~~~~~~l~~~~~~~Gf~~~~~ 133 (297)
T 2zig_A 100 VAVARRR-FGR----HLVFPLHADIQVRCRKLGFDNLNP 133 (297)
T ss_dssp EEEECC---------EEEECHHHHHHHHHHHTTCEEEEE
T ss_pred Ccccccc-CCc----ccccccHHHHHHHHHHcCCeeecc
Confidence 3211000 000 00122 467888999999987763
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.081 Score=50.79 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=32.7
Q ss_pred CCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.| .|.|.++..+|+ +|+.|.+++.|..-+..++
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 182 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK 182 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 678999998 478999988877 4999999999987765443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.03 E-value=0.18 Score=48.74 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=31.7
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| .|.++..+|+ +|+.|.+++.|..-+..+
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 204 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA 204 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 56799999986 6888888876 599999999998776443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.89 E-value=0.46 Score=46.20 Aligned_cols=41 Identities=12% Similarity=-0.073 Sum_probs=37.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~f 229 (412)
++..||||=||.|..+....++|....|+|++..+...+.-
T Consensus 252 ~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~ 292 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAF 292 (323)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHG
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHH
Confidence 56799999999999999999999999999999999877663
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.87 E-value=0.6 Score=45.44 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=31.8
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015160 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 226 (412)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (412)
+++.+||+.|+ |.|..+..+|+ +|+.|.+++.+..-+..
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~ 210 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKI 210 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHH
Confidence 36779999997 78888887766 59999999999876643
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.82 E-value=0.13 Score=48.68 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+ |.|.++..+|+ +|+.|.+++-+..-+.
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~ 164 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA 164 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6779999998 78999888876 5999999999876653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.2 Score=48.33 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=33.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc--CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL--GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~--Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+|. |.++..||+. |..|.++|.|..-+..++
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~ 213 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR 213 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 677999999976 8899999875 789999999998775444
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=90.74 E-value=0.44 Score=47.62 Aligned_cols=36 Identities=11% Similarity=-0.189 Sum_probs=32.2
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMI 225 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~ 225 (412)
+..||++|.|+|.|+..|+.+ +-.|+++|+...++-
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~ 96 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK 96 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHH
Confidence 468999999999999999987 568999999998763
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.45 Score=46.47 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=32.1
Q ss_pred CCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.| .|.|.++..+|+ +|+.|.+++.+..-+..+
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~ 204 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFL 204 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 677999999 578999988876 599999999998766433
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.18 Score=48.42 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (412)
++.+||+.|+ |.|..+..+++ +|+.|.+++.+..-+..
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~ 185 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAET 185 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6779999995 88998877765 69999999999866543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.77 Score=48.87 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=51.1
Q ss_pred ceeEEecccccccCC-CC-CCCCccEEEEecccCCh-hhH------HHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 277 GFSMCGGDFVEVYSD-PS-QVGAWDAVVTCFFIDTA-HNI------VEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 277 ~~s~~~GDF~ely~~-~~-~~~~fD~VvT~FFIDta-~Ni------~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
.+.++.||..+.... +. ..+.+|++ |+|-. +.. .++|..+.+++||||.+..++
T Consensus 149 ~l~l~~gd~~~~l~~~~~~~~~~~da~----flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------------- 211 (689)
T 3pvc_A 149 TLDLWFGDVNTLLPTLDDSLNNQVDAW----FLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------------- 211 (689)
T ss_dssp EEEEEESCHHHHGGGCCGGGTTCEEEE----EECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-------------
T ss_pred EEEEEccCHHHHHhhcccccCCceeEE----EECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-------------
Confidence 488999999886431 00 13567776 66632 111 588999999999999987421
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
....+++.+.++||.+.+..
T Consensus 212 -------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 -------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp -------CCHHHHHHHHHTTCEEEEEE
T ss_pred -------CcHHHHHHHHhCCeEEEecc
Confidence 12578899999999988744
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.43 E-value=0.18 Score=48.26 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=31.7
Q ss_pred CCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.| .|.|..+..+++ +|+.|.+++.+..-+..+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~ 181 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA 181 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 677999999 578988877766 699999999998776443
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=90.39 E-value=0.077 Score=51.34 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=29.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML 224 (412)
++.+||+.|+|. |.++..+|+ +|. .|.+++.|..-+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~ 202 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRL 202 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 456899999864 888888887 599 899999998654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.26 E-value=0.3 Score=48.09 Aligned_cols=40 Identities=20% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-C-CeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-G-FISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+| .|.++..||+. | ..|.+++.|..-+..++
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 237 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 237 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence 67799999976 58888888874 8 69999999987765443
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=90.16 E-value=0.44 Score=47.76 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=32.5
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015160 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICS 227 (412)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (412)
+++.+||+.|+ |.|.++..+|+. |..|.+++-|..-+..+
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~ 261 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV 261 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 36789999997 679998888775 99999999888776543
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=0.3 Score=47.57 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 188 ESPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
+++.+||+.| .|.|..+..+++ +|+.|.+++.|..-+..+
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 203 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA 203 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 3678999998 478888877765 599999999998776543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=0.18 Score=48.85 Aligned_cols=37 Identities=30% Similarity=0.265 Sum_probs=30.5
Q ss_pred CC--CeEEEecC--CCChhHHHHHH-cCC-eEEEEeCCHHHHH
Q 015160 189 SP--PACLVPGA--GLGRLALEISH-LGF-ISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~--~rVLvPGC--GlGRLa~eLA~-~Gf-~V~GnD~S~~ML~ 225 (412)
++ .+||+.|+ |.|.++..+++ +|+ .|.+++.+..-+.
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~ 200 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCI 200 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 56 79999997 78998887766 699 9999999976553
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.35 Score=47.04 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.| .|.|.++..+|+ +|+.|.+++.|..-+..++
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 209 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE 209 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4678999995 468999888877 4999999999998765443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.55 E-value=0.25 Score=47.19 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=28.5
Q ss_pred eEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015160 192 ACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 225 (412)
Q Consensus 192 rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (412)
+||+.|+ |.|.++..+|+ +|+.|.+++-+..-+.
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~ 188 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD 188 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 7999997 78999999887 5999999998865543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=89.44 E-value=0.46 Score=47.99 Aligned_cols=41 Identities=22% Similarity=0.093 Sum_probs=32.9
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|+ |.|.++..+|+. |+.|.+++-|..=+..++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~ 270 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR 270 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence 36789999997 689999999875 999999998887665443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=89.33 E-value=1.6 Score=38.36 Aligned_cols=33 Identities=18% Similarity=-0.015 Sum_probs=24.6
Q ss_pred eEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGC--GlGRL-a~eLA~~Gf~V~GnD~S~~ML 224 (412)
+||+.|+ |+|+. +..|+++|+.|.+++-+..-+
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~ 37 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA 37 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 6999996 34443 566777899999999887543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.01 E-value=1.5 Score=39.25 Aligned_cols=36 Identities=22% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~ML 224 (412)
.+.+||+.|+ |+|+ ++..|+++|+.|.+++-+..-+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~ 58 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG 58 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH
Confidence 4679999997 4454 4667778899999999887543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=88.28 E-value=0.38 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=28.1
Q ss_pred eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 192 ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 192 rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
+||+.|+ |.|.++..+|+. |+.|.+++-|..-+.
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~ 189 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD 189 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHH
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 7999997 789998888774 999999998865543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=87.71 E-value=1.7 Score=38.35 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=21.3
Q ss_pred eEEEecCCCChhH----HHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRLA----LEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRLa----~eLA~~Gf~V~GnD~S~ 221 (412)
+||+.|+ +|.++ ..|+++|+.|.+++-+.
T Consensus 2 ~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 2 KIFIVGS-TGRVGKSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp EEEEEST-TSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred eEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 7999994 45554 45556699999998775
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=87.67 E-value=0.63 Score=45.00 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015160 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMIC 226 (412)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (412)
+++.+||+.|+ |.|.++..+|+. |+.|.++ .|..-+..
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~ 189 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEY 189 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHH
Confidence 36789999994 679999888875 9999999 77766543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=0.46 Score=46.15 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=27.0
Q ss_pred CeEEEecCC-CChhH-HHHH-H-cCCe-EEEEeCCHH
Q 015160 191 PACLVPGAG-LGRLA-LEIS-H-LGFI-SQGNEFSYY 222 (412)
Q Consensus 191 ~rVLvPGCG-lGRLa-~eLA-~-~Gf~-V~GnD~S~~ 222 (412)
.+||+.|+| .|.++ ..+| + +|+. |.+++-+..
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~ 210 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR 210 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence 799999976 48888 8888 5 5997 999999875
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=1.8 Score=39.58 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=28.7
Q ss_pred CCCeEEEecCC----CCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAG----LGR-LALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG----lGR-La~eLA~~Gf~V~GnD~S~~ML 224 (412)
.+.+||+-|++ .|+ ++..|+++|+.|..++.+....
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~ 46 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLE 46 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHH
Confidence 45689999965 666 6889999999999998876443
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=87.25 E-value=0.98 Score=43.89 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=29.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| .|.++..+|+. |..|.+++-|..-+.
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~ 218 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRE 218 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 56799999987 47778888764 999999999876553
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=86.91 E-value=11 Score=37.98 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=32.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--Ce-----EEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FI-----SQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~-----V~GnD~S~~ML~~s~ 228 (412)
+..+||++=||.|.+..-|-+.| +. |.++|+......+.+
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~ 55 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYV 55 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHH
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHH
Confidence 45799999999999998888888 33 568999998876544
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=86.75 E-value=8 Score=43.71 Aligned_cols=39 Identities=15% Similarity=-0.068 Sum_probs=33.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-e-EEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-I-SQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~-V~GnD~S~~ML~~s 227 (412)
...++||+=||.|.+..-|.+.|+ . |.|+|+......+.
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty 579 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAF 579 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHH
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHH
Confidence 567999999999999999999998 4 66999999876543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=0.73 Score=45.06 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=29.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+|. |.++..+|+ +|+.|.+++-|..-+.
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~ 225 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKE 225 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 567999999864 777777776 4999999999876553
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.57 E-value=0.92 Score=44.34 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCCeEEEec-C-CCChhHHHHHHc--CCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPG-A-GLGRLALEISHL--GFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPG-C-GlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.| + |.|.++..+|+. |..|.+++-+..-+..+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~ 213 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWV 213 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence 567899998 4 569999999985 88999999998766443
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=86.25 E-value=0.41 Score=40.68 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=26.2
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
.|+++|+|...| |..|+++|++|+-+|-+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 499999999998 78899999999999954
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.14 E-value=1.8 Score=41.98 Aligned_cols=88 Identities=19% Similarity=0.320 Sum_probs=54.1
Q ss_pred eeEEecccccccCCCCCCCCccEEEEe--cccCC------------hhhHHHHHHHHHHhccCCcEEE-EecCcchhhhh
Q 015160 278 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT------------AHNIVEYIEIISRILKDGGVWI-NLGPLLYHFAD 342 (412)
Q Consensus 278 ~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt------------a~Ni~~yl~~I~~~LKPGG~wI-N~GPLlyh~~~ 342 (412)
..++.||.+++... -..++||+|+|- |.... ...+.+.|+.++++|||||.++ ..+.. | ..
T Consensus 15 ~~ii~gD~~~~l~~-l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~-~--~~ 90 (323)
T 1boo_A 15 GSMYIGDSLELLES-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA-Y--MK 90 (323)
T ss_dssp EEEEESCHHHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC-E--ET
T ss_pred ceEEeCcHHHHHhh-CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE-e--cC
Confidence 67889998774321 125789999987 54331 1236678889999999999875 34421 1 00
Q ss_pred ccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 343 ~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
| .+ ..-......+..+++..||.+..+
T Consensus 91 --g-~~-~~~~~~~~~i~~~~~~~Gf~~~~~ 117 (323)
T 1boo_A 91 --G-VP-ARSIYNFRVLIRMIDEVGFFLAED 117 (323)
T ss_dssp --T-EE-EECCHHHHHHHHHHHTTCCEEEEE
T ss_pred --C-Cc-ccccchHHHHHHHHHhCCCEEEEE
Confidence 0 00 000123456777888999987753
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=85.62 E-value=0.62 Score=46.35 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=25.4
Q ss_pred CCCeEEEecCCC-ChhHHH-HHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGL-GRLALE-ISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~e-LA~~Gf~V~GnD~S~~ML 224 (412)
++.+|+++|+|. |+.+.. +...|..|.+.|.+..-+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l 204 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKL 204 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 567999999853 333333 334599999999998765
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=85.36 E-value=1.2 Score=43.35 Aligned_cols=51 Identities=18% Similarity=-0.022 Sum_probs=40.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCH---HHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSY---YMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~---~ML~~s~ 228 (412)
+++.|-+.+. .++..||||=||.|..+....++|....|+|++. .+...+.
T Consensus 231 l~~~~i~~~~----~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~ 284 (319)
T 1eg2_A 231 VIERLVRALS----HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQL 284 (319)
T ss_dssp HHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHH
Confidence 4555554442 2567999999999999999999999999999999 7776554
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.25 E-value=7.6 Score=37.48 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=34.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCeE---EEEeCCHHHHHHH
Q 015160 188 ESPPACLVPGAGLGRLALEISHLGFIS---QGNEFSYYMMICS 227 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf~V---~GnD~S~~ML~~s 227 (412)
+...+|||+=||.|.+...|.+.|+.+ .++|++.....+.
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty 56 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVG 56 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHH
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHH
Confidence 467899999999999999999999986 7999999876543
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.97 E-value=6.6 Score=37.85 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=59.0
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 190 PPACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 190 ~~rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
..+|.++|+|. |.++..|++.|+ .|.+.|.+..-+..+. +.. +
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-------~~G-----------------------~--- 79 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-------DLG-----------------------I--- 79 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-------HTT-----------------------S---
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-------HCC-----------------------C---
Confidence 36899999885 456888889999 9999999987653222 000 0
Q ss_pred CCCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 266 DIHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~e-ly~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
..-...|..+ .. ..-|+|+.+--.+ .+.++++.+...|+||.+++.++-
T Consensus 80 ------------~~~~~~~~~~~~~------~~aDvVilavp~~---~~~~vl~~l~~~l~~~~iv~d~~S 129 (314)
T 3ggo_A 80 ------------IDEGTTSIAKVED------FSPDFVMLSSPVR---TFREIAKKLSYILSEDATVTDQGS 129 (314)
T ss_dssp ------------CSEEESCTTGGGG------GCCSEEEECSCGG---GHHHHHHHHHHHSCTTCEEEECCS
T ss_pred ------------cchhcCCHHHHhh------ccCCEEEEeCCHH---HHHHHHHHHhhccCCCcEEEECCC
Confidence 0001112222 21 3468887765433 356778888888999998887543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.88 E-value=0.92 Score=44.76 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=25.7
Q ss_pred CCCeEEEecCC-CChhH-HHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAG-LGRLA-LEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa-~eLA~~Gf~V~GnD~S~~ML 224 (412)
++.+|++.|+| .|+.+ ..++..|+.|++.|.+..-+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~ 202 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRL 202 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 45799999985 23333 33345699999999998655
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=0.77 Score=44.95 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.5
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
+++.+||+.|+ |.|.++..+|+. |+.|.+.- |..=+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~ 202 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD 202 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH
Confidence 36789999998 489999999875 99998884 765543
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=84.69 E-value=1.3 Score=43.11 Aligned_cols=110 Identities=11% Similarity=-0.044 Sum_probs=71.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
..|+++.|... .+..+||.=+|+|.++.|+.+.|-.++.+|.+..-+.+-+ +.
T Consensus 80 l~~yf~~l~~~-------n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~---~N----------------- 132 (283)
T 2oo3_A 80 FLEYISVIKQI-------NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLL---KL----------------- 132 (283)
T ss_dssp GHHHHHHHHHH-------SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHT---TS-----------------
T ss_pred HHHHHHHHHHh-------cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHH---HH-----------------
Confidence 34788888774 2346899999999999999998878999999997763211 00
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEecccCCh----hhHHHHHHHHHH--h
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISR--I 323 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~e-ly~~~~~~~~fD~VvT~FFIDta----~Ni~~yl~~I~~--~ 323 (412)
... ..++.+..+|... +........+||+| |||.. ....+.++.+.+ .
T Consensus 133 -l~~--------------------~~~~~V~~~D~~~~L~~l~~~~~~fdLV----fiDPPYe~k~~~~~vl~~L~~~~~ 187 (283)
T 2oo3_A 133 -PHF--------------------NKKVYVNHTDGVSKLNALLPPPEKRGLI----FIDPSYERKEEYKEIPYAIKNAYS 187 (283)
T ss_dssp -CCT--------------------TSCEEEECSCHHHHHHHHCSCTTSCEEE----EECCCCCSTTHHHHHHHHHHHHHH
T ss_pred -hCc--------------------CCcEEEEeCcHHHHHHHhcCCCCCccEE----EECCCCCCCcHHHHHHHHHHHhCc
Confidence 000 1235677778544 22100113569988 67763 245566666665 4
Q ss_pred ccCCcEEEE
Q 015160 324 LKDGGVWIN 332 (412)
Q Consensus 324 LKPGG~wIN 332 (412)
+.|+|+++-
T Consensus 188 r~~~Gi~v~ 196 (283)
T 2oo3_A 188 KFSTGLYCV 196 (283)
T ss_dssp HCTTSEEEE
T ss_pred cCCCeEEEE
Confidence 668999983
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=84.54 E-value=1.8 Score=42.13 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=26.4
Q ss_pred CCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCH
Q 015160 190 PPACLVPGAG-LGRLALEISH-LGFISQGNEFSY 221 (412)
Q Consensus 190 ~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~ 221 (412)
+.+||+.|+| .|.++..+|+ +|+.|.+++.+.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~ 214 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 6799999985 4777777776 599999999986
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=84.54 E-value=0.3 Score=59.88 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=27.0
Q ss_pred CCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc-hhhhhccC-----CCCCcccCCCHHHHHHHHHhCCC
Q 015160 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL-YHFADLYG-----QEDEMSIELSLEDVKRVALHYGF 368 (412)
Q Consensus 295 ~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl-yh~~~~~g-----~~~~~~ieLS~EEL~~ll~~~GF 368 (412)
...||+|+...-+....++.+.+..++++|||||++|-..+.. +.+....+ ..+ ..-.++.++..+++...||
T Consensus 1309 ~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~~r~-~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A 1309 LGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSPEQG-GRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp ---CCEEEEECC--------------------CCEEEEEEC---------------------------CTTTTSSTTTTE
T ss_pred CCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEecccccccccccccccccccc-CCcccCHHHHHHHHHhCCC
Confidence 3569999988888877889999999999999999987532110 00000000 000 0113566667777888999
Q ss_pred EEEEE
Q 015160 369 EFEKE 373 (412)
Q Consensus 369 eii~e 373 (412)
..+..
T Consensus 1388 ~~~~~ 1392 (2512)
T 2vz8_A 1388 HLVAL 1392 (2512)
T ss_dssp EEEEE
T ss_pred ceeee
Confidence 87653
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=83.79 E-value=4 Score=38.38 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=30.1
Q ss_pred CeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015160 191 PACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMICS 227 (412)
Q Consensus 191 ~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (412)
.+|.++|+|+ +.+|..|++.|+.|+..|.+..-+..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 43 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAA 43 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 4799999986 346778888999999999999876443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=83.77 E-value=0.72 Score=46.62 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=27.4
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eL-A~~Gf~V~GnD~S~~ML~ 225 (412)
++.+|+++|+|. |+.+..+ ...|..|++.|.+..-+.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~ 221 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAE 221 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 567999999983 5554444 445999999999986543
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=83.59 E-value=4.3 Score=38.91 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=28.9
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S~~ML 224 (412)
...+|.++|+|. |+ ++..|++.|+.|++.|.+..-+
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~ 67 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARA 67 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHH
Confidence 346899999984 43 5778889999999999998654
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=83.51 E-value=12 Score=34.62 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=25.8
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~M 223 (412)
++.+||+-|+ ++|+ ++..|+++|+.|.+++-+..-
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 47 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 4578999997 3343 355667789999999988654
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=83.45 E-value=3.3 Score=39.23 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=28.0
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 190 PPACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 190 ~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
..+|.++|+|. +.++..|++.|+.|++.|.+..-+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~ 43 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQAC 43 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45899998874 335777888899999999998654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=83.08 E-value=4.5 Score=35.13 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=24.4
Q ss_pred eEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHH
Q 015160 192 ACLVPGA--GLGR-LALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 192 rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~M 223 (412)
+||+.|+ |+|+ ++..|+++|+.|.+++-+..-
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~ 36 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK 36 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh
Confidence 7999996 3455 466678889999999887644
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=82.96 E-value=2.7 Score=41.64 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=58.6
Q ss_pred CCeEEEecCCC-C-hhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGL-G-RLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGl-G-RLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|.++|+|. | .++..|++.|+.|++.|.+..-+.... +. .+.
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~-------~~-----------------------g~~---- 67 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE-------RE-----------------------GIA---- 67 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-------TT-----------------------TCB----
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-------HC-----------------------CCE----
Confidence 46899999873 3 347778888999999999987643211 00 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
...|..++.. .....|+|+.+.--+ .+.+.++.+...|+||-++|+.+-
T Consensus 68 -------------~~~s~~e~~~---~a~~~DvVi~~vp~~---~v~~vl~~l~~~l~~g~iiId~st 116 (358)
T 4e21_A 68 -------------GARSIEEFCA---KLVKPRVVWLMVPAA---VVDSMLQRMTPLLAANDIVIDGGN 116 (358)
T ss_dssp -------------CCSSHHHHHH---HSCSSCEEEECSCGG---GHHHHHHHHGGGCCTTCEEEECSS
T ss_pred -------------EeCCHHHHHh---cCCCCCEEEEeCCHH---HHHHHHHHHHhhCCCCCEEEeCCC
Confidence 0012222211 013458888765433 467788888899999999997544
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=82.81 E-value=0.56 Score=46.94 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=27.2
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
++|+|+|+|.+.| |+.||++|++|+-+|-+.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~ 34 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence 4799999999999 788999999999998764
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=82.51 E-value=7.2 Score=36.63 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=28.2
Q ss_pred CCCeEEEecCC----CCh-hHHHHHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGAG----LGR-LALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGCG----lGR-La~eLA~~Gf~V~GnD~S~~M 223 (412)
.+.+||+-|++ .|+ ++..|+++|+.|..++.+..-
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~ 69 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL 69 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 45689999965 555 688899999999999988643
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=82.45 E-value=0.9 Score=45.13 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=26.7
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA-~~Gf~V~GnD~S~~ML 224 (412)
++.+|+++|+|. |+.+..++ ..|..|++.|.+..-+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~ 208 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATK 208 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 567999999874 55555554 4599999999987544
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=82.43 E-value=8.6 Score=39.15 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~~ 226 (412)
+-.+|.++|+|+ +.+|..|++.|+.|++.|.+..-+..
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~ 75 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDA 75 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 345899999997 45788999999999999999987643
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.40 E-value=1.1 Score=45.56 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA-~~Gf~V~GnD~S~~ML~ 225 (412)
++.+|+++|+|. |..+..++ ..|..|++.|.+..-+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~ 227 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKE 227 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 567999999983 44444443 45999999999986553
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=82.21 E-value=2.6 Score=39.26 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=47.4
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--cccCCh------------hhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhc
Q 015160 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA------------HNIVEYIEIISRILKDGGVWIN-LGPLLYHFADL 343 (412)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta------------~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~ 343 (412)
.++.||.+++... -..++||+|+|- |..... .-+...|+.++++|||||.++- .++ +
T Consensus 6 ~l~~gD~~~~l~~-l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d----~--- 77 (260)
T 1g60_A 6 KIHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP----F--- 77 (260)
T ss_dssp SEEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH----H---
T ss_pred eEEechHHHHHHh-ccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc----H---
Confidence 4678887664321 124689999886 544311 1245677888999999998753 221 1
Q ss_pred cCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 344 ~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
....+..++...||.+..+
T Consensus 78 -----------~~~~~~~~~~~~gf~~~~~ 96 (260)
T 1g60_A 78 -----------NCAFICQYLVSKGMIFQNW 96 (260)
T ss_dssp -----------HHHHHHHHHHHTTCEEEEE
T ss_pred -----------HHHHHHHHHHhhccceeEE
Confidence 0234566777889987664
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=82.14 E-value=3.8 Score=42.69 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=25.6
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eL-A~~Gf~V~GnD~S~~ML~ 225 (412)
.+.+|++.|+|. |+.+..+ ...|+.|.+.|.+..-+.
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~ 311 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 311 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 567999999853 3333232 335999999999986543
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=81.87 E-value=27 Score=37.54 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=33.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC------CeE-EEEeCCHHHHHHHHhhhhc
Q 015160 189 SPPACLVPGAGLGRLALEISHLG------FIS-QGNEFSYYMMICSSFILNH 233 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G------f~V-~GnD~S~~ML~~s~filn~ 233 (412)
+..+|||+=||.|.|+.=|.+.| |.| .++|++..+..+- .+|+
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty--~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSL--KYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHH--HHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHH--HHHC
Confidence 45789999999999988887777 764 5999999876543 3554
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.51 E-value=0.84 Score=44.59 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 188 ESPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
+++.+||+.| .|.|.++..+|+. |..|.+.+ |..-+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~ 220 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDAS 220 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHH
Confidence 3678999999 4679998888764 99999988 55443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=81.38 E-value=13 Score=33.83 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=22.9
Q ss_pred CeEEEecCCCChhHHH----HHHcCCeEEEEeCCHH
Q 015160 191 PACLVPGAGLGRLALE----ISHLGFISQGNEFSYY 222 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~e----LA~~Gf~V~GnD~S~~ 222 (412)
.+||+.|| |.++.. |.++|+.|.+++-+..
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChh
Confidence 58999995 766554 4566999999988764
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.35 E-value=19 Score=32.32 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=29.0
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
.+.+||+-|++.| .++..|+++|+.|..++.+..-+
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~ 46 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAA 46 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 4568999997654 35788888999999999988765
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=81.28 E-value=4.8 Score=39.14 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=51.5
Q ss_pred eeEE-ecccccccCCCCCCCCccEEEEe--cccC------C---hhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhcc
Q 015160 278 FSMC-GGDFVEVYSDPSQVGAWDAVVTC--FFID------T---AHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLY 344 (412)
Q Consensus 278 ~s~~-~GDF~ely~~~~~~~~fD~VvT~--FFID------t---a~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~ 344 (412)
..++ .||.+++... -..++||+|+|- |... . ..-+...|..++++|||||+++- .+.. +.
T Consensus 39 ~~l~i~gD~l~~L~~-l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~---~~--- 111 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAK-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ---YQ--- 111 (319)
T ss_dssp EEEEEECCHHHHHHT-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC---CC---
T ss_pred ceEEECCcHHHHHHh-CccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc---cc---
Confidence 4567 8998874321 125789999985 4432 1 11356778888999999998864 2211 10
Q ss_pred CCCCCcccCCCHHHHHHHHHhCC-CEEEEE
Q 015160 345 GQEDEMSIELSLEDVKRVALHYG-FEFEKE 373 (412)
Q Consensus 345 g~~~~~~ieLS~EEL~~ll~~~G-Feii~e 373 (412)
+ + ........+..++...| |.+..+
T Consensus 112 ~--~--~~~~~l~~l~~~i~~~G~~~~~~~ 137 (319)
T 1eg2_A 112 G--E--AGSGDLISIISHMRQNSKMLLANL 137 (319)
T ss_dssp C--C--TTBCCHHHHHHHHHHHCCCEEEEE
T ss_pred c--c--cccccHHHHHHHHhCcccceeEEE
Confidence 0 0 01123456677777778 988764
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.89 E-value=6.9 Score=36.07 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=26.8
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|.++|+|. +.++..|++.|++|.+.|.+..-+
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~ 36 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTC 36 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 689999885 345677888899999999998654
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=80.70 E-value=3 Score=41.06 Aligned_cols=228 Identities=14% Similarity=0.141 Sum_probs=121.0
Q ss_pred cccCCCCCCCccccchhHHhhhccccccccCCCCC-------CCCCCCCCCcCCCCCCcchHHHHHHHHHHHhcCccc-C
Q 015160 92 IEYKTASCPGKLENREETNQSCSNDFTDSNGNASS-------PACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAE-G 163 (412)
Q Consensus 92 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~g~~~~-------~~~~w~~~~~~~~~~~~d~~kv~s~L~q~~RDWS~e-G 163 (412)
.+-...-.++++-+|.-=+++++..+ |-|+-|. .+++|-.+.. ..-+.==.++.+++.|-+.-- +
T Consensus 36 ~F~eDka~S~e~aLn~ictr~~G~Dl--dSGlfS~p~v~l~y~~~HWdNspg-----~~myG~n~~v~~~l~~r~p~~~~ 108 (320)
T 2hwk_A 36 YFETDKAHSAEIVLNQLCVRFFGLDL--DSGLFSAPTVPLSIRNNHWDNSPS-----PNMYGLNKEVVRQLSRRYPQLPR 108 (320)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHSCCG--GGCTTBSSSEECEEETTEEECCSC-----SCEEBCCHHHHHHHHTTCTTHHH
T ss_pred ccccccccCHHHHHHHHHHHhhcccc--CcccccCCccceeeccccccCCCC-----ccccCcCHHHHHHHHHhCchhhh
Confidence 33445567889999988888887665 4453211 1245654321 111222234566666665421 0
Q ss_pred h---------hHH-hhchHHHHHHHHhhCCCCCCCCCCeEEEe---cCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHh
Q 015160 164 K---------TER-DQCYKPILEELDALFPNRSKESPPACLVP---GAGLGRLALEISHL-GFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 164 ~---------~ER-~~~y~pIl~~L~~~~p~~~~~~~~rVLvP---GCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~f 229 (412)
+ .++ -+.|.|-. ..+|- +|.-...||+ .++.|+....+.+. |+.|.-+| +.|.+
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~~~----n~vP~--NRrlPH~Lv~~~~~~~~~~~~~~~~k~~g~~vl~v~--~~~~~---- 176 (320)
T 2hwk_A 109 AVATGRVYDMNTGTLRNYDPRI----NLVPV--NRRLPHALVLHHNEHPQSDFSSFVSKLKGRTVLVVG--EKLSV---- 176 (320)
T ss_dssp HHHHTCEECTTTSSEECCCTTS----CCSCT--TSCCSSCCCSCCCCCCCCCCHHHHHTSSCSEEEEEE--SCCCC----
T ss_pred hcccCeEEeccCCccccCCccc----ceecc--ccCCCcchhhhhhccCCCCHHHHHhhCCCcEEEEEe--ccccc----
Confidence 0 000 00111110 01111 2233345554 68899998888876 88887774 33321
Q ss_pred hhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEE-ecccccccCCCCCCCCccEEEEec---
Q 015160 230 ILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMC-GGDFVEVYSDPSQVGAWDAVVTCF--- 305 (412)
Q Consensus 230 iln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~-~GDF~ely~~~~~~~~fD~VvT~F--- 305 (412)
..+.-.| |+| + .+..+. .+||.+-. ..+.+|+|++-.
T Consensus 177 ----p~k~v~w-i~P-------------------i-----------~GAt~~~~lDfg~p~----~~~k~DvV~SDMApn 217 (320)
T 2hwk_A 177 ----PGKMVDW-LSD-------------------R-----------PEATFRARLDLGIPG----DVPKYDIIFVNVRTP 217 (320)
T ss_dssp ----TTSEEEE-EES-------------------S-----------TTCSEECCGGGCSCT----TSCCEEEEEEECCCC
T ss_pred ----CCceeEe-ecc-------------------C-----------CCceeecccccCCcc----ccCcCCEEEEcCCCC
Confidence 1111111 122 1 123344 78887632 247799999763
Q ss_pred --------ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeecc
Q 015160 306 --------FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (412)
Q Consensus 306 --------FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~ 377 (412)
++|.+.-+.-.++-..++|||||.+|-. .|.++| -..++|...+++ -|+.++.-...
T Consensus 218 ~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~K---vyggaD-----------r~se~lv~~LaR-~F~~Vr~vKP~ 282 (320)
T 2hwk_A 218 YKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSI---GYGYAD-----------RASESIIGAIAR-QFKFSRVCKPK 282 (320)
T ss_dssp CCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEE---ECCCCS-----------HHHHHHHHHHHT-TEEEEEEECCT
T ss_pred CCCccccccchHHHHHHHHHHHHHHhcCCCceEEEE---EecCCc-----------ccHHHHHHHHHH-hcceeeeeCCC
Confidence 1344432333556666999999999962 343332 124788888876 49888754333
Q ss_pred ccCCCCcccccccccceEEEEEEEc
Q 015160 378 TTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 378 s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
+.=. + .-.|+||+.-
T Consensus 283 ASR~-S---------tEvf~La~gf 297 (320)
T 2hwk_A 283 SSLE-E---------TEVLFVFIGY 297 (320)
T ss_dssp TCCS-T---------TCEEEEEEEE
T ss_pred Cccc-c---------ceEEEEEEee
Confidence 2222 1 4578888873
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=80.64 E-value=0.88 Score=45.79 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=27.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (412)
++.+|+++|+|. |+.+..+++ .|..|++.|.+..-+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~ 209 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE 209 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 467999999874 555555544 5999999999986553
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.60 E-value=2.5 Score=42.32 Aligned_cols=52 Identities=12% Similarity=-0.065 Sum_probs=40.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~ 228 (412)
+++++-+.+.. +++..++|-.||.|..+..|+++ | -.|.|+|.++.+|..++
T Consensus 45 Ll~Evl~~L~i---~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 45 LLDEAVNGLNI---RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp TTHHHHHHTCC---CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred cHHHHHHhhCC---CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 34444444432 26679999999999999999887 3 47999999999998775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 412 | ||||
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 7e-15 |
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (176), Expect = 7e-15
Identities = 31/247 (12%), Positives = 67/247 (27%), Gaps = 17/247 (6%)
Query: 162 EGKTERDQCYKPI-LEELDALFPNRSKESPPACLVPGAGLGRL-ALEISHLGFISQGNEF 219
G P L L F + G+G L +F
Sbjct: 27 RGDLCNPNGVGPWKLRCLAQTFATGEVS-GRTLIDIGSGPTVYQLLSACSHFEDITMTDF 85
Query: 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFS 279
L A W++Y + + + + +
Sbjct: 86 LEVNRQELGRWLQEEPGAFNWSMY---SQHACLIEGKGECWQDKERQLRARVKRVLPIDV 142
Query: 280 MCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE----YIEIISRILKDGGVWINLGP 335
+ DA+V+ F ++ + ++ I+ +L+ GG + +G
Sbjct: 143 HQPQPL---GAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199
Query: 336 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTA 395
L + G+ + +S E+V+ + G++ + T +
Sbjct: 200 LEESWYL-AGEARLTVVPVSEEEVREALVRSGYKVRD---LRTYIMPAHLQTGVDDVKGV 255
Query: 396 FWTMRKK 402
F+ +K
Sbjct: 256 FFAWAQK 262
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 412 | |||
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.84 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.83 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.81 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.79 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.79 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.79 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.76 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.75 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.75 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.75 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.74 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.74 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.72 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.71 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.69 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.68 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.68 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.67 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.59 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.59 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.59 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.57 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.56 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.52 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.52 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.52 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.47 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.44 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.44 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.42 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.41 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.4 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.39 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.34 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.34 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.32 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.28 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.24 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.22 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.14 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.1 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.1 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.09 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.07 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.01 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.0 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.99 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.97 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.92 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.88 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.84 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.81 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.78 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.77 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.76 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.71 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.7 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.65 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.65 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.64 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.62 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.54 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.53 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.48 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.46 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.43 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.42 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.42 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.4 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.34 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.33 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.29 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.16 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.15 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.12 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.11 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.01 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.98 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.98 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.94 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.93 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.93 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.87 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.84 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.78 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.46 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.38 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.19 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.15 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.05 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.02 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.93 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.87 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.69 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.46 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.21 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.95 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.92 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.9 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.77 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.63 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.16 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.95 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.95 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 94.71 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.44 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.32 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.22 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.01 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.54 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.48 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 93.48 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.43 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.42 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.97 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.87 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.8 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.65 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.38 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.24 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.0 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 91.57 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.39 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.05 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.02 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.64 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 89.63 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 89.19 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 89.15 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 88.76 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.68 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 88.66 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.63 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 88.25 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 88.15 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 87.84 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.32 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 87.3 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.05 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 85.47 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.55 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 84.43 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 84.42 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 83.62 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.19 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 82.62 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 81.91 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 80.9 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 80.71 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 80.25 |
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.84 E-value=2.8e-20 Score=171.55 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=81.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+||++..||++|++|+|+|+|..||..|+-.+..
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~----------------------------------- 81 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS----------------------------------- 81 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH-----------------------------------
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccc-----------------------------------
Confidence 456899999999999999999999999999999999877632210
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F----FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...++.++.+|+.++.. .++||+|++.+ ++.+..++..+|+.++++|||||++|
T Consensus 82 -----~~~~v~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 82 -----QGLKPRLACQDISNLNI----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp -----TTCCCEEECCCGGGCCC----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred -----cCccceeeccchhhhcc----cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 01136789999988643 47899998753 56677889999999999999999998
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=7.2e-20 Score=168.38 Aligned_cols=171 Identities=9% Similarity=0.010 Sum_probs=113.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
..+.+++.+.++++.. ++.||||||||.||++..||++||+|+|+|+|..|+..++-..+.. |-....
T Consensus 29 ~~~~l~~~~~~~l~~~---~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~---------~~~~~~ 96 (229)
T d2bzga1 29 GHQLLKKHLDTFLKGK---SGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLS---------YSEEPI 96 (229)
T ss_dssp CCHHHHHHHHHHHTTC---CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCC---------EEEEEC
T ss_pred CCHHHHHHHHHhcCCC---CCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcc---------ccccch
Confidence 4556777787765422 5679999999999999999999999999999999997555222110 000000
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPG 327 (412)
... ....+. .....++.+..+|+.++.. ...+.||+|+.+.++. ..+....|++.++++||||
T Consensus 97 ~~~-~~~~~~------------~~~~~~v~~~~~d~~~l~~--~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 97 TEI-PGTKVF------------KSSSGNISLYCCSIFDLPR--TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK 161 (229)
T ss_dssp TTS-TTCEEE------------EETTSSEEEEESCGGGGGG--SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred hcc-ccccee------------eecCCcEEEEEcchhhccc--cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc
Confidence 000 000000 0123458999999998754 3468999999875443 3356889999999999999
Q ss_pred cEEEEecCcchhhhh-ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 328 GVWINLGPLLYHFAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 328 G~wIN~GPLlyh~~~-~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|+++-... .+.. ..+++ ++.++.+||++++.. +|++...+
T Consensus 162 G~~~l~~~---~~~~~~~~gp---p~~~~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 162 FQYLLCVL---SYDPTKHPGP---PFYVPHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp EEEEEEEE---ECCTTTCCCS---SCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred ceEEEEEc---ccCCCCCCCC---CCCCCHHHHHHHhcC-CCEEEEEE
Confidence 98874321 1111 11112 467899999999965 79886643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.81 E-value=6.5e-20 Score=159.94 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=107.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+.+.+++..+-+ .++.||||||||+||++..||++||.|+|+|+|..||..|+...+..... ...
T Consensus 7 ~~~~~~~~~l~~----~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~--~~~--------- 71 (201)
T d1pjza_ 7 KDLQQYWSSLNV----VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHI--TSQ--------- 71 (201)
T ss_dssp HHHHHHHHHHCC----CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEE--EEE---------
T ss_pred HHHHHHHHHcCC----CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccch--hhh---------
Confidence 345555554422 26789999999999999999999999999999999998887443211000 000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~ 329 (412)
..... .......+..+|+.++.. .....||+|++.+.+.. ..+...+++.++++|||||+
T Consensus 72 --------~~~~~--------~~~~~~~~~~~d~~~l~~--~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~ 133 (201)
T d1pjza_ 72 --------GDFKV--------YAAPGIEIWCGDFFALTA--RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 133 (201)
T ss_dssp --------TTEEE--------EECSSSEEEEECCSSSTH--HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred --------hhhhh--------ccccccceeccccccccc--ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcE
Confidence 00000 011236789999988753 23468999998765432 24578999999999999998
Q ss_pred EEEecCcchhhhh-ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 330 WINLGPLLYHFAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 330 wIN~GPLlyh~~~-~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++-.. +.+.. ..+ . ..+.++.+|+++++. .+|++...+
T Consensus 134 l~l~~---~~~~~~~~~-~--p~~~~~~~el~~l~~-~~~~i~~~~ 172 (201)
T d1pjza_ 134 GLLIT---LEYDQALLE-G--PPFSVPQTWLHRVMS-GNWEVTKVG 172 (201)
T ss_dssp EEEEE---ESSCSSSSS-S--CCCCCCHHHHHHTSC-SSEEEEEEE
T ss_pred EEEEE---cccccccCC-C--ccccCCHHHHHHHhC-CCcEEEEEE
Confidence 86321 11111 111 1 145689999999884 589886543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=1.5e-18 Score=158.84 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=80.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
+..+|||+|||+|+++..|+++|+.|+|+|+|..||..|+..++. .
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~---~------------------------------- 86 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE---R------------------------------- 86 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---T-------------------------------
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccccccc---c-------------------------------
Confidence 556899999999999999999999999999999999877743211 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.+..+|+.++.. .++||+|++.+ ..-+.+++.+.|++++++|||||++|-
T Consensus 87 ------~~~i~~~~~d~~~l~~----~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 87 ------NLKIEFLQGDVLEIAF----KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp ------TCCCEEEESCGGGCCC----CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------cccchheehhhhhccc----ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 0126789999998753 36899998764 233456889999999999999999984
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.6e-19 Score=163.54 Aligned_cols=213 Identities=15% Similarity=0.083 Sum_probs=121.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhccccccc-ccccccccccC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGE-WNIYPWIHSNC 250 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~-~~I~P~i~~~s 250 (412)
.++..+.+.+... ..++.+|||+|||+|+++..+|+.|+ .|+|+|+|..|+..++-.++....... .....++....
T Consensus 36 ~~~~~~~~~~~~~-~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 114 (257)
T d2a14a1 36 FNLECLHKTFGPG-GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELE 114 (257)
T ss_dssp HHHHHHHHHHSTT-SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhccc-CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhc
Confidence 4555555555422 23567999999999999999998887 599999999999887744432111000 00001111000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcee-EEecccc-cccCCCCCCCCccEEEEecccCCh----hhHHHHHHHHHHhc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFS-MCGGDFV-EVYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISRIL 324 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s-~~~GDF~-ely~~~~~~~~fD~VvT~FFIDta----~Ni~~yl~~I~~~L 324 (412)
.......++.. .....+. ....+.. +....+...++||+|++.|.|+.. ++...++++|+++|
T Consensus 115 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~L 183 (257)
T d2a14a1 115 GNSGRWEEKEE-----------KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL 183 (257)
T ss_dssp TCGGGHHHHHH-----------HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE
T ss_pred cccchHHHHHH-----------HHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhcc
Confidence 00000000000 0000000 0000000 001112346899999998866533 57788999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEE-EEEEcC
Q 015160 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFW-TMRKKS 403 (412)
Q Consensus 325 KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~-VarK~~ 403 (412)
||||++|-.+++....... .........++.++|+++++++||++++.+.....|... ...+...|| ||||++
T Consensus 184 kpGG~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~-----~~~~~~~~~v~arKkp 257 (257)
T d2a14a1 184 KPGGHLVTTVTLRLPSYMV-GKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVT-----NAANNGVCCIVARKKP 257 (257)
T ss_dssp EEEEEEEEEEESSCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTT-----TCCCCCEEEEEEEECC
T ss_pred CCCcEEEEEEeccccccee-ccccccccCCCHHHHHHHHHHCCCEEEEEEEeccccccc-----cCCCCcEEEEEEEeCc
Confidence 9999999766553322111 111112456899999999999999998876555555432 233344555 689874
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=8.3e-20 Score=172.14 Aligned_cols=206 Identities=16% Similarity=0.117 Sum_probs=125.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc-
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN- 249 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~- 249 (412)
..++..+.+.++... .++.+|||+|||+|.++..++.. +..|+|+|+|..|+..++.-++.... .+.|.+..
T Consensus 38 ~~~~~~~~~~f~~g~-~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~-----~~d~~~~~~ 111 (263)
T d2g72a1 38 PWKLRCLAQTFATGE-VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPG-----AFNWSMYSQ 111 (263)
T ss_dssp HHHHHHHHHHHHTSC-SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTT-----CCCCHHHHH
T ss_pred hhHHHHHHHHcCCCC-CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcc-----cccchhhhh
Confidence 344566666665332 36789999999999998666655 55799999999999888755543211 11111000
Q ss_pred --C---CCCC----cccCccccccCCCCCCCCCCCCceeEEeccccccc---CCCCCCCCccEEEEecccCCh----hhH
Q 015160 250 --C---NSLS----DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWDAVVTCFFIDTA----HNI 313 (412)
Q Consensus 250 --s---n~~s----~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely---~~~~~~~~fD~VvT~FFIDta----~Ni 313 (412)
+ .... .+.++|. ........|.+.-. ..+...++||+|++.|.|+.. .+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~ 177 (263)
T d2g72a1 112 HACLIEGKGECWQDKERQLRA--------------RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASF 177 (263)
T ss_dssp HHHHHHCSCCCHHHHHHHHHH--------------HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHH
T ss_pred hhhhhccccchhhhhHHHhhh--------------hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHH
Confidence 0 0000 0000000 01223334443211 111235789999999987654 357
Q ss_pred HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccc
Q 015160 314 VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYF 393 (412)
Q Consensus 314 ~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~ 393 (412)
...|++|+++|||||++|..|++.+++... |......+.++.|+|+++++++||++++.+..... ++.+.....|.
T Consensus 178 ~~~l~~~~~~LkPGG~li~~~~~~~~~~~~-~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~---~~~~~~~~d~~ 253 (263)
T d2g72a1 178 QRALDHITTLLRPGGHLLLIGALEESWYLA-GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMP---AHLQTGVDDVK 253 (263)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEESCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECC---GGGCCTTBCCC
T ss_pred HHHHHHHHHHcCCCCEEEEecccCCccccc-CCcccccCCCCHHHHHHHHHHCCCeEEEEEEeecc---Ccccccccccc
Confidence 788999999999999999988887665432 22222356799999999999999999885532111 11111224566
Q ss_pred eE-EEEEEE
Q 015160 394 TA-FWTMRK 401 (412)
Q Consensus 394 ~~-f~VarK 401 (412)
.. |++|||
T Consensus 254 ~~~~~~ArK 262 (263)
T d2g72a1 254 GVFFAWAQK 262 (263)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 65 558998
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.76 E-value=1.8e-18 Score=154.61 Aligned_cols=127 Identities=16% Similarity=0.158 Sum_probs=97.9
Q ss_pred cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccc
Q 015160 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETA 237 (412)
Q Consensus 158 DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~ 237 (412)
+|.+....+.+..+..+...|+++++ ++.+|||+|||+|+++..||+.|+.|+|+|+|..|+..|+..+.. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~---~ 82 (226)
T d1ve3a1 11 TYTDINSQEYRSRIETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKS---R 82 (226)
T ss_dssp TTTCTTSHHHHHHHHHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---T
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcc---c
Confidence 45666677766666667777777775 456999999999999999999999999999999999877643311 0
Q ss_pred ccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHH
Q 015160 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVE 315 (412)
Q Consensus 238 ~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~ 315 (412)
...+.++.+|+.++.. ..++||+|++.+.+.. ..++..
T Consensus 83 -------------------------------------~~~~~~~~~d~~~l~~---~~~~fD~I~~~~~l~~~~~~d~~~ 122 (226)
T d1ve3a1 83 -------------------------------------ESNVEFIVGDARKLSF---EDKTFDYVIFIDSIVHFEPLELNQ 122 (226)
T ss_dssp -------------------------------------TCCCEEEECCTTSCCS---CTTCEEEEEEESCGGGCCHHHHHH
T ss_pred -------------------------------------cccccccccccccccc---cCcCceEEEEecchhhCChhHHHH
Confidence 0114567788888643 4689999998875543 357889
Q ss_pred HHHHHHHhccCCcEEEE
Q 015160 316 YIEIISRILKDGGVWIN 332 (412)
Q Consensus 316 yl~~I~~~LKPGG~wIN 332 (412)
+|+.|+++|||||++|-
T Consensus 123 ~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 123 VFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCcEEEE
Confidence 99999999999999873
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.75 E-value=3e-18 Score=155.00 Aligned_cols=142 Identities=14% Similarity=0.150 Sum_probs=104.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|.+|+|+|+|..|+..|+-.+...
T Consensus 15 ~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~---------------------------------- 60 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGN---------------------------------- 60 (231)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccc----------------------------------
Confidence 6789999999999999999999999999999999998766332110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Cc------chh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PL------LYH 339 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G---PL------lyh 339 (412)
...++.+..+|+.++. ...++||+|++...+...++....|+.++++|||||+++-.. |- +|+
T Consensus 61 -----~~~~i~~~~~d~~~l~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 132 (231)
T d1vl5a_ 61 -----GHQQVEYVQGDAEQMP---FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 132 (231)
T ss_dssp -----TCCSEEEEECCC-CCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHH
T ss_pred -----cccccccccccccccc---ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 0124789999998864 346899999998877666778899999999999999888421 11 111
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+..... .......++.+++.++++++||++++.
T Consensus 133 ~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~ 165 (231)
T d1vl5a_ 133 YVEKER-DYSHHRAWKKSDWLKMLEEAGFELEEL 165 (231)
T ss_dssp HHHHHH-CTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred HHHhhc-ccCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 111000 111123578999999999999998763
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=7.7e-18 Score=150.75 Aligned_cols=144 Identities=22% Similarity=0.155 Sum_probs=105.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
|..-+..|....| +.+|||+|||+|+++..++ .++|+|+|..|+..++ +.
T Consensus 24 ~~~~~~~~~~~~~------~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~-------~~------------- 73 (208)
T d1vlma_ 24 YLSELQAVKCLLP------EGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIAR-------KR------------- 73 (208)
T ss_dssp HHHHHHHHHHHCC------SSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHH-------HT-------------
T ss_pred HHHHHHHHHhhCC------CCeEEEECCCCcccccccc----eEEEEeCChhhccccc-------cc-------------
Confidence 4445566666654 3479999999999998886 4689999999987654 10
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
++.++.+|+.++.. ..++||+|++.+.|...+|+.++|++++++|||||++
T Consensus 74 --------------------------~~~~~~~d~~~l~~---~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l 124 (208)
T d1vlma_ 74 --------------------------GVFVLKGTAENLPL---KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYL 124 (208)
T ss_dssp --------------------------TCEEEECBTTBCCS---CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEE
T ss_pred --------------------------cccccccccccccc---ccccccccccccccccccccccchhhhhhcCCCCceE
Confidence 15678899887643 4689999999988887788999999999999999999
Q ss_pred EEecCcchhh-----hhc-cC-CCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 331 INLGPLLYHF-----ADL-YG-QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 331 IN~GPLlyh~-----~~~-~g-~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+-..|....+ ... .. ........+|.++++++++++||+.++.
T Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v 174 (208)
T d1vlma_ 125 IVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 174 (208)
T ss_dssp EEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 8543322211 110 00 0111223479999999999999998773
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=9e-18 Score=150.46 Aligned_cols=164 Identities=17% Similarity=0.155 Sum_probs=104.4
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||+|||+|+++..||++|++|+|+|+|..||..++..... . .
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~---~-----------------------~-------- 76 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAA---E-----------------------G-------- 76 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---T-----------------------T--------
T ss_pred CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhh---c-----------------------c--------
Confidence 45999999999999999999999999999999999766532210 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
..++.+..+|+.++.. .++||+|++.+.+. +.+++.++|+.++++|||||+++..... +..+..+ .
T Consensus 77 -----~~~~~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~--~~~~~~~-~ 144 (198)
T d2i6ga1 77 -----LDNLQTDLVDLNTLTF----DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM--DTPDFPC-T 144 (198)
T ss_dssp -----CTTEEEEECCTTTCCC----CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB--C--------
T ss_pred -----ccchhhhheecccccc----cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec--CCccCCC-C
Confidence 1236778889887643 57899999765433 3356889999999999999999853211 1111101 0
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEEEEEEc
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~e~-~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
......++.+|+++++ .||+++... .....+..+... ......-..|||||+
T Consensus 145 ~~~~~~~~~~el~~~~--~~~~i~~~~e~~~~~~~~~~~~-~~~~~~~~~~varK~ 197 (198)
T d2i6ga1 145 VGFPFAFKEGELRRYY--EGWDMLKYNEDVGELHRTDENG-NRIKLRFATMLARKT 197 (198)
T ss_dssp --CCCCBCTTHHHHHT--TTSEEEEEEEEECCC-------------EEEEEEEECC
T ss_pred CCCCCccCHHHHHHHh--CCCeEEEeeeccceeeecCCCC-cEeeEEEEEEEEEeC
Confidence 0113457788898887 589988632 221112221111 112345566799997
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.74 E-value=2.4e-17 Score=150.21 Aligned_cols=153 Identities=15% Similarity=0.083 Sum_probs=105.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
|...+.++++ ++.+|||+|||+|.++..|++ .|++|+|+|+|..||..|+..+...
T Consensus 29 i~~~~~~~~~-----~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~--------------- 88 (225)
T d1im8a_ 29 IGMLAERFVT-----ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--------------- 88 (225)
T ss_dssp HHHHHHHHCC-----TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS---------------
T ss_pred HHHHHHHhcC-----CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh---------------
Confidence 3344445554 567999999999999999997 4899999999999998887433210
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPG 327 (412)
.....+.+..+|+.++. .+.+|+|++.+.+. ..++...+|++|+++||||
T Consensus 89 -----------------------~~~~~~~~~~~d~~~~~-----~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg 140 (225)
T d1im8a_ 89 -----------------------HSEIPVEILCNDIRHVE-----IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN 140 (225)
T ss_dssp -----------------------CCSSCEEEECSCTTTCC-----CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE
T ss_pred -----------------------cccchhhhccchhhccc-----cccceeeEEeeeccccChhhHHHHHHHHHHhCCCC
Confidence 00123677888887753 36789888776433 3467889999999999999
Q ss_pred cEEEEecCcchh--------------hhhccCCCC-C----------cccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 328 GVWINLGPLLYH--------------FADLYGQED-E----------MSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 328 G~wIN~GPLlyh--------------~~~~~g~~~-~----------~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|++|...+.... +....|..+ + ....+|.+++..+++++||+.++..
T Consensus 141 G~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 141 GVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELW 212 (225)
T ss_dssp EEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEE
T ss_pred ceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEe
Confidence 999964322110 000001000 0 0123699999999999999987643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.74 E-value=6e-18 Score=154.89 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=109.5
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 254 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s 254 (412)
++.|.+..+- +++.||||+|||+|.++..||++|++|+|+|+|..||..|+-.+.. .
T Consensus 5 ~~~l~~~~~~---~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~---~----------------- 61 (234)
T d1xxla_ 5 LGLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQE---K----------------- 61 (234)
T ss_dssp HHHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH---H-----------------
T ss_pred HHHHHHHhCC---CCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcc---c-----------------
Confidence 3444444432 3788999999999999999999999999999999999877633211 0
Q ss_pred cccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-
Q 015160 255 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL- 333 (412)
Q Consensus 255 ~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~- 333 (412)
. ..++.+..+|..++. ..+++||+|++++.+...+|+..+|++++++|||||+++-.
T Consensus 62 ------~-------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 62 ------G-------------VENVRFQQGTAESLP---FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ------T-------------CCSEEEEECBTTBCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------c-------------ccccccccccccccc---ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 0 123788999988763 34689999998887776678999999999999999998742
Q ss_pred -c----CcchhhhhccC--CCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 334 -G----PLLYHFADLYG--QEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 334 -G----PLlyh~~~~~g--~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+ |.+..+.+... ..+...-..+.+++..++++.||+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~ 165 (234)
T d1xxla_ 120 HYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQD 165 (234)
T ss_dssp ECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEE
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeE
Confidence 1 11111111000 011122346899999999999998765
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.5e-17 Score=150.02 Aligned_cols=142 Identities=13% Similarity=0.187 Sum_probs=103.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+..+|||+|||+|+++..|+++++ .|+|+|+|..||..|+-.+...
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~--------------------------------- 106 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------------------------------- 106 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG---------------------------------
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccc---------------------------------
Confidence 567999999999999999876655 7999999999998777332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
...++.|.++|+.++.. ..++||+|++.+.+... +++.++++.++++|||||++|...+..-... ...
T Consensus 107 ------~~~~~~f~~~d~~~~~~---~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~-~~~ 176 (222)
T d2ex4a1 107 ------GKRVRNYFCCGLQDFTP---EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV-ILD 176 (222)
T ss_dssp ------GGGEEEEEECCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE-EEE
T ss_pred ------ccccccccccccccccc---ccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc-ccc
Confidence 01236899999998743 36899999988755433 3467899999999999999985432211100 000
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.....+..+.++++++++++||++++.+
T Consensus 177 -~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 177 -DVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp -TTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred -cCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 0112455699999999999999998865
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.71 E-value=4.9e-17 Score=153.16 Aligned_cols=154 Identities=17% Similarity=0.103 Sum_probs=110.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
.+++.|....+- .++.+|||+|||+|.++..||++ |..|+|+|+|..|+..|+-..+..
T Consensus 54 ~~~~~l~~~~~l---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~----------------- 113 (282)
T d2o57a1 54 WLASELAMTGVL---QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA----------------- 113 (282)
T ss_dssp HHHHHHHHTTCC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhcCC---CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccc-----------------
Confidence 355566654432 26789999999999999999987 899999999999997776332210
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++.+..+|+.++.. ..++||+|++..-+...+|...+|++++++|||||+++
T Consensus 114 ---------------------gl~~~v~~~~~d~~~l~~---~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~ 169 (282)
T d2o57a1 114 ---------------------GLADNITVKYGSFLEIPC---EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA 169 (282)
T ss_dssp ---------------------TCTTTEEEEECCTTSCSS---CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------cccccccccccccccccc---cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEE
Confidence 112358899999988743 46899999987655545678899999999999999998
Q ss_pred EecCcchh---------hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYH---------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh---------~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-..+..-. +..... .....|.+++.+++++.||+.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 170 ITDPMKEDGIDKSSIQPILDRIK----LHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp EEEEEECTTCCGGGGHHHHHHHT----CSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeecCCCCchhHHHHHHHHhc----cCCCCCHHHHHHHHHHcCCceEEEE
Confidence 53322110 000000 0123588999999999999987743
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.71 E-value=7.2e-17 Score=147.46 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=108.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
-++..+.+.+ ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..|+-.+
T Consensus 10 ~~~~~~~~~~------~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~--------------------- 62 (225)
T d2p7ia1 10 FMVRAFTPFF------RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL--------------------- 62 (225)
T ss_dssp HHHHHHGGGC------CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS---------------------
T ss_pred HHHHHhhhhC------CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc---------------------
Confidence 3445555554 3458999999999999999999999999999999997665111
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHH-HhccCCcEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS-RILKDGGVWI 331 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~-~~LKPGG~wI 331 (412)
..++.++.+|+.++.. .++||+|++...|.-.+|....|..++ ++|||||+++
T Consensus 63 ----------------------~~~~~~~~~~~~~~~~----~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~ 116 (225)
T d2p7ia1 63 ----------------------KDGITYIHSRFEDAQL----PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLF 116 (225)
T ss_dssp ----------------------CSCEEEEESCGGGCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEE
T ss_pred ----------------------cccccccccccccccc----ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEE
Confidence 1136788899887643 478999998877777778889999998 8999999998
Q ss_pred EecCcchhhhh----ccCC---CC---------CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYHFAD----LYGQ---ED---------EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh~~~----~~g~---~~---------~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-.-|-.+.+.. ..+. .. .....++.++++++++++||++++.+
T Consensus 117 i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 117 LVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp EEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 54332111100 0000 00 01224699999999999999998855
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.1e-16 Score=147.63 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=111.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
..++.|.+.+.-. ++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.. .+.
T Consensus 20 ~~~~~l~~~~~l~---pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~---~~~-------------- 79 (245)
T d1nkva_ 20 EKYATLGRVLRMK---PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA---EEL-------------- 79 (245)
T ss_dssp HHHHHHHHHTCCC---TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHH---HHT--------------
T ss_pred HHHHHHHHHcCCC---CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHH---HHh--------------
Confidence 3456666665433 6789999999999999999886 899999999999997766211 100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++.+..+|+.++.. .++||+|++..-+....|...+++.++++|||||++|
T Consensus 80 ---------------------gl~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~ 134 (245)
T d1nkva_ 80 ---------------------GVSERVHFIHNDAAGYVA----NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 134 (245)
T ss_dssp ---------------------TCTTTEEEEESCCTTCCC----SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEE
T ss_pred ---------------------hccccchhhhhHHhhccc----cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEE
Confidence 112358899999998642 5889999988766666778899999999999999998
Q ss_pred EecCcchhh------hhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 332 NLGPLLYHF------ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 332 N~GPLlyh~------~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
-.-|..... .......+ ..-.++..++..++++.||+++..
T Consensus 135 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~aG~~~v~~ 181 (245)
T d1nkva_ 135 IGEPYWRQLPATEEIAQACGVSS-TSDFLTLPGLVGAFDDLGYDVVEM 181 (245)
T ss_dssp EEEEEETTCCSSHHHHHTTTCSC-GGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EEeccccCCCChHHHHHHhccCC-CcccCCHHHHHHHHHHcCCEEEEE
Confidence 532211110 00001111 122468999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=6.5e-17 Score=146.20 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=81.2
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 254 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s 254 (412)
...+.++++ ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..|+-- .
T Consensus 33 ~~~~~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~---~-------------------- 84 (246)
T d2avna1 33 GSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREK---G-------------------- 84 (246)
T ss_dssp HHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHH---T--------------------
T ss_pred HHHHHHhcC-----CCCEEEEECCCCchhcccccccceEEEEeecccccccccccc---c--------------------
Confidence 344555655 456999999999999999999999999999999999766510 0
Q ss_pred cccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 255 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 255 ~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
. -.++.+|+.++. ...++||+|++.+ ++...+|..+.|++|+++|||||++|-
T Consensus 85 -------~---------------~~~~~~~~~~l~---~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii 138 (246)
T d2avna1 85 -------V---------------KNVVEAKAEDLP---FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 138 (246)
T ss_dssp -------C---------------SCEEECCTTSCC---SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred -------c---------------cccccccccccc---cccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEE
Confidence 0 123567777763 3468999999875 455556778899999999999999984
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.68 E-value=2.5e-16 Score=147.82 Aligned_cols=141 Identities=16% Similarity=0.056 Sum_probs=102.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+..+|||+|||+||++..|+.+++ .|+|+|.|..||..|+-.+..
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~---------------------------------- 138 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---------------------------------- 138 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT----------------------------------
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc----------------------------------
Confidence 567999999999999999887765 699999999999877622110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++.+..+|+.++.. ..++||+|++...+.. .+++.++|+.++++|||||++|..-++...-.....
T Consensus 139 -------~~~~~~~~~d~~~~~~---~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d 208 (254)
T d1xtpa_ 139 -------MPVGKFILASMETATL---PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD 208 (254)
T ss_dssp -------SSEEEEEESCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE
T ss_pred -------cccceeEEcccccccc---CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec
Confidence 0126788899888643 3589999998865543 345789999999999999999843222111000000
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
....++..|.++++++++++||++++++
T Consensus 209 -~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 209 -KEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp -TTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred -ccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 1112566799999999999999998865
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.67 E-value=3.6e-16 Score=145.06 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=101.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..+++.|+ .|+|+|+|..||..|+...+..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~--------------------------------- 70 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------------------------------- 70 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS---------------------------------
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999998 5999999999997766322110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc----cCChhhHHHHHHHHHHhccCCcEEEEecCc-------
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF----IDTAHNIVEYIEIISRILKDGGVWINLGPL------- 336 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF----IDta~Ni~~yl~~I~~~LKPGG~wIN~GPL------- 336 (412)
....++.+.++|+..... ...++||+|++.+. +++.+++..+|+.++++|||||++|-.-|-
T Consensus 71 -----~~~~~v~f~~~D~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~ 143 (252)
T d1ri5a_ 71 -----KRRFKVFFRAQDSYGRHM--DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER 143 (252)
T ss_dssp -----CCSSEEEEEESCTTTSCC--CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred -----CCCcceEEEEcchhhhcc--cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHH
Confidence 011247889999865432 12578999988753 456677889999999999999999842111
Q ss_pred ---------chhh--hhcc-----CC-----------CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 337 ---------LYHF--ADLY-----GQ-----------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 337 ---------lyh~--~~~~-----g~-----------~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+|.. .... +. .....+-+..+.++++++++||+++...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~ 208 (252)
T d1ri5a_ 144 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK 208 (252)
T ss_dssp HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred HHhcccCCceEEEecccccCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 0110 0000 00 0000123478999999999999998754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.59 E-value=4.3e-15 Score=140.75 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=90.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
-.+++|.+.+... .++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+.....
T Consensus 13 d~l~~l~~~~~~~--~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~---------------- 74 (281)
T d2gh1a1 13 DYVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL---------------- 74 (281)
T ss_dssp HHHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS----------------
T ss_pred HHHHHHHHHHhcc--CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc----------------
Confidence 3566666544322 25679999999999999999985 78999999999999877632210
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
.+.++.|..+|+.++.. .++||+|++...+...+|....|+.++++|||||.
T Consensus 75 ------------------------~~~~~~f~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~ 126 (281)
T d2gh1a1 75 ------------------------LPYDSEFLEGDATEIEL----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGK 126 (281)
T ss_dssp ------------------------SSSEEEEEESCTTTCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEE
T ss_pred ------------------------ccccccccccccccccc----cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcE
Confidence 01136789999887642 36899999998888778889999999999999999
Q ss_pred EEEecC
Q 015160 330 WINLGP 335 (412)
Q Consensus 330 wIN~GP 335 (412)
+|-+-|
T Consensus 127 lii~~~ 132 (281)
T d2gh1a1 127 IICFEP 132 (281)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 986555
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=3.3e-15 Score=141.30 Aligned_cols=138 Identities=13% Similarity=0.099 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015160 148 VRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (412)
Q Consensus 148 v~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (412)
....-..+..+|.......++ .+++.|... +..+|||+|||+|+++..||++|+.|+|+|+|..||..|
T Consensus 26 ~~~~~~~~~~~~~~r~~~~~~----~l~~~l~~~-------~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A 94 (292)
T d1xvaa_ 26 AARVWQLYIGDTRSRTAEYKA----WLLGLLRQH-------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYA 94 (292)
T ss_dssp HHHHHHHHHHTTCCBCHHHHH----HHHHHHHHT-------TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHH----HHHHHhhhc-------CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHH
Confidence 333445677777665554443 234444332 346899999999999999999999999999999999877
Q ss_pred HhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--
Q 015160 228 SFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-- 305 (412)
Q Consensus 228 ~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-- 305 (412)
+-...... .... .....+..+||..+.......++||+|++.+
T Consensus 95 ~~~~~~~~--~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~ 139 (292)
T d1xvaa_ 95 LKERWNRR--KEPA---------------------------------FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 139 (292)
T ss_dssp HHHHHHTT--TSHH---------------------------------HHTCEEEECCGGGHHHHSCCTTCEEEEEECSSC
T ss_pred HHHHHhcc--cccc---------------------------------cceeeeeeccccccccccCCCCCceEEEEecCc
Confidence 63221100 0000 0012344455544321001246899998753
Q ss_pred --ccC----ChhhHHHHHHHHHHhccCCcEEE
Q 015160 306 --FID----TAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 306 --FID----ta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
++. ...++..+|+.++++|||||++|
T Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 140 FAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp GGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred hhhcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence 332 24568889999999999999998
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=5e-15 Score=140.13 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=102.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
-+++.|.++.. ++.+|||+|||+|.++..++++|.+|+|+|+|+.|+..|+.... . +
T Consensus 109 l~l~~l~~~~~-----~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~---~-n-------------- 165 (254)
T d2nxca1 109 LALKALARHLR-----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAK---R-N-------------- 165 (254)
T ss_dssp HHHHHHHHHCC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHH---H-T--------------
T ss_pred HHHHHHHhhcC-----ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHH---H-c--------------
Confidence 46777777653 56799999999999999999999999999999999987773221 0 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.+ +..+..+|+.+... .++||+|+++.+. +.+.+.++.+.++|||||++|-
T Consensus 166 --------~~--------------~~~~~~~d~~~~~~----~~~fD~V~ani~~---~~l~~l~~~~~~~LkpGG~lil 216 (254)
T d2nxca1 166 --------GV--------------RPRFLEGSLEAALP----FGPFDLLVANLYA---ELHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp --------TC--------------CCEEEESCHHHHGG----GCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------CC--------------ceeEEecccccccc----ccccchhhhcccc---ccHHHHHHHHHHhcCCCcEEEE
Confidence 11 13567888776543 5789999987554 3467889999999999999996
Q ss_pred ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.|.+ .-..+++++.+++.||++++..
T Consensus 217 Sgil----------------~~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 217 TGIL----------------KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEEE----------------GGGHHHHHHHHHHTTCEEEEEE
T ss_pred Eecc----------------hhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 1125789999999999998754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=1.6e-14 Score=137.85 Aligned_cols=142 Identities=13% Similarity=0.033 Sum_probs=99.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||.|.++..+|++ |..|+|+|+|..|+..++-... +.
T Consensus 52 ~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~---~~------------------------------ 98 (280)
T d2fk8a1 52 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLA---SI------------------------------ 98 (280)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH---TS------------------------------
T ss_pred CCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHH---hh------------------------------
Confidence 6789999999999999999977 9999999999999976663221 10
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEE--ec-Ccch----
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWIN--LG-PLLY---- 338 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN--~G-PLly---- 338 (412)
.....+.+...|+.++ .++||.|++.-.+... +|...||+.|+++|||||+++- ++ .-.+
T Consensus 99 -----~l~~~~~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~ 167 (280)
T d2fk8a1 99 -----DTNRSRQVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAA 167 (280)
T ss_dssp -----CCSSCEEEEESCGGGC------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHT
T ss_pred -----ccccchhhhhhhhhhh------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhh
Confidence 0112356677777654 3789999988544433 6788999999999999999973 11 0000
Q ss_pred -----hhhhc----c---CCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 339 -----HFADL----Y---GQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 339 -----h~~~~----~---g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.+... + -.-| .....|.+++..++++.||+++..+.
T Consensus 168 ~~~~~~~~~~~~~dfI~kyifP-gg~lPS~~~l~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 168 RGKKLSFETARFIKFIVTEIFP-GGRLPSTEMMVEHGEKAGFTVPEPLS 215 (280)
T ss_dssp TCHHHHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred cccccccccccccchhhhhccC-CCcccchHhhhhhHHhhccccceeee
Confidence 00000 0 0011 12346999999999999999987543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.56 E-value=7.4e-14 Score=129.85 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=102.7
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+.|.+.++-. ...+|||+|||+|.++..|+++ +-.++++|++ .|+..++-.+.. .
T Consensus 70 ~~~~~~~d~~---~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~---~---------------- 126 (253)
T d1tw3a2 70 DAPAAAYDWT---NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKD---E---------------- 126 (253)
T ss_dssp HHHHHHSCCT---TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHH---T----------------
T ss_pred HHHHhhcCCc---cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHH---h----------------
Confidence 3444455422 4569999999999999999999 4678899985 577655522210 0
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEE
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....+++++.|||++.. ...||+|+..+.|. ..++..+.|++++++|||||.++
T Consensus 127 -------------------~~~~rv~~~~~D~~~~~-----~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~ 182 (253)
T d1tw3a2 127 -------------------GLSDRVDVVEGDFFEPL-----PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRIL 182 (253)
T ss_dssp -------------------TCTTTEEEEECCTTSCC-----SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred -------------------hcccchhhccccchhhc-----ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEE
Confidence 11235899999997732 25799999877654 33556789999999999999887
Q ss_pred EecCcchhh---------hhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccc
Q 015160 332 NLGPLLYHF---------ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIET 378 (412)
Q Consensus 332 N~GPLlyh~---------~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s 378 (412)
-.-.....- -+..-.......+.|.+|++++++++||++++...+..
T Consensus 183 i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~ 238 (253)
T d1tw3a2 183 IHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPS 238 (253)
T ss_dssp EEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred EEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCC
Confidence 421111000 00000000012356999999999999999988664433
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.52 E-value=7e-14 Score=130.11 Aligned_cols=170 Identities=13% Similarity=0.030 Sum_probs=109.6
Q ss_pred HHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhh
Q 015160 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn 232 (412)
-+|-|... |. .+-..|.+.+....-.++.+|||+|||+|..+..||+.+ -.|+|+|+|+.|+..++...
T Consensus 48 e~r~w~p~----rs----klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a- 118 (230)
T d1g8sa_ 48 EYRIWNPN----KS----KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC- 118 (230)
T ss_dssp EEEECCTT----TC----HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT-
T ss_pred eeeeECCC----cc----HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-
Confidence 47888754 22 455666654443334478999999999999999999985 47999999999996554221
Q ss_pred cccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh
Q 015160 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN 312 (412)
Q Consensus 233 ~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N 312 (412)
.+ ..++..+.+|...... .....+|+++.+..+....+
T Consensus 119 --~~--------------------------------------~~ni~~i~~d~~~~~~--~~~~~~~v~~i~~~~~~~~~ 156 (230)
T d1g8sa_ 119 --AE--------------------------------------RENIIPILGDANKPQE--YANIVEKVDVIYEDVAQPNQ 156 (230)
T ss_dssp --TT--------------------------------------CTTEEEEECCTTCGGG--GTTTCCCEEEEEECCCSTTH
T ss_pred --hh--------------------------------------hcccceEEEeeccCcc--cccccceeEEeeccccchHH
Confidence 11 0123445556554332 12356676655544555566
Q ss_pred HHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 313 IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 313 i~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
...++..+++.|||||.++-. .+....+ ... ......+++++.|++.||++++... ..+|-.|
T Consensus 157 ~~~~l~~~~r~LKpgG~~~i~---~k~~~~d-~~~---~~~~~~~e~~~~L~~aGF~ive~id-L~py~~~ 219 (230)
T d1g8sa_ 157 AEILIKNAKWFLKKGGYGMIA---IKARSID-VTK---DPKEIFKEQKEILEAGGFKIVDEVD-IEPFEKD 219 (230)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE---EEGGGTC-SSS---CHHHHHHHHHHHHHHHTEEEEEEEE-CTTTSTT
T ss_pred HHHHHHHHHHhcccCceEEEE---eeccccC-CCC---CHHHHHHHHHHHHHHcCCEEEEEec-CCCCcCC
Confidence 788999999999999998742 1111111 111 1234568888999999999987543 3456443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=1.2e-13 Score=132.59 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=107.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.|-+.+.- .++.+|||+|||.|.++..+|++ |..|+|+.+|..++..++-... +.
T Consensus 50 k~~~~~~~l~l---~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~---~~--------------- 108 (285)
T d1kpga_ 50 KIDLALGKLGL---QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVA---NS--------------- 108 (285)
T ss_dssp HHHHHHTTTTC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH---TC---------------
T ss_pred HHHHHHHHcCC---CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHH---hh---------------
Confidence 45555555542 37889999999999999998766 9999999999999876652221 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~w 330 (412)
...+++.+..+|+.++ +++||.|++.-.+... .|...|++.|+++|||||++
T Consensus 109 --------------------g~~~~v~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~ 162 (285)
T d1kpga_ 109 --------------------ENLRSKRVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM 162 (285)
T ss_dssp --------------------CCCSCEEEEESCGGGC------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred --------------------hhhhhhHHHHhhhhcc------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcE
Confidence 1123478888998765 3689999998644433 67789999999999999999
Q ss_pred EE--ec---Ccch-------hhh--hc--c---CCCCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 331 IN--LG---PLLY-------HFA--DL--Y---GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 331 IN--~G---PLly-------h~~--~~--~---g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
+- ++ |... ++. .. + -.-| .+.-.|.+++..++++.||+++....+
T Consensus 163 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFp-gg~lPsl~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 163 LLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP-GGRLPSIPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp EEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEEEEeccCchhhccccCCcchhhhchhhHHHHHhcc-CCCCCChhhHHHHHHHhchhhcccccc
Confidence 73 22 1110 000 00 0 0001 123458999999999999999986644
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=2.4e-13 Score=130.70 Aligned_cols=147 Identities=11% Similarity=0.012 Sum_probs=101.7
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||.|.++..+|+ .|..|+|+++|..++..++-.... .
T Consensus 61 ~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~---~------------------------------ 107 (291)
T d1kpia_ 61 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE---V------------------------------ 107 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH---S------------------------------
T ss_pred CCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHh---h------------------------------
Confidence 788999999999999999985 599999999999998776632211 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC---------hhhHHHHHHHHHHhccCCcEEEE--ec--
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---------AHNIVEYIEIISRILKDGGVWIN--LG-- 334 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt---------a~Ni~~yl~~I~~~LKPGG~wIN--~G-- 334 (412)
.....+.+..+|+... +++||.|++.=.+.. .+|...||+.|+++|||||+++- ++
T Consensus 108 -----~l~~~v~~~~~d~~~~------~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 108 -----DSPRRKEVRIQGWEEF------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp -----CCSSCEEEEECCGGGC------CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred -----ccchhhhhhhhccccc------ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 1112366777776432 478999998743322 25788999999999999999973 21
Q ss_pred CcchhhhhccC---------------CCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccC
Q 015160 335 PLLYHFADLYG---------------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (412)
Q Consensus 335 PLlyh~~~~~g---------------~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y 380 (412)
.-.+..+.... .-| .....|..++..++++.||+++..+.+..-|
T Consensus 177 ~~~~~~~~~~~~p~~~~~~~~fi~kyiFp-gg~lps~~~~~~~~e~~gl~v~~~~~~~~hY 236 (291)
T d1kpia_ 177 DKEEAQELGLTSPMSLLRFIKFILTEIFP-GGRLPRISQVDYYSSNAGWKVERYHRIGANY 236 (291)
T ss_dssp CHHHHHHHTCCCCHHHHHHHHHHHHHTCT-TCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred CcchhhhccCCCchhhcccchHHHHHhcC-CCCCCCHHHHHhhhcccccccceeeeccccH
Confidence 11121110000 001 1345689999999999999999876554444
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=8e-14 Score=130.29 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=96.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc--------CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcc
Q 015160 189 SPPACLVPGAGLGRLALEISHL--------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr 260 (412)
+..+|||+|||+|.++..|++. +..++|+|.|..||..++--+.. ... +.
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~------~~~----------------~~ 97 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK------ISN----------------LE 97 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTT------CCS----------------CT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhh------ccc----------------cc
Confidence 4568999999999998888664 34689999999999766522110 000 00
Q ss_pred ccccCCCCCCCCCCCCceeEEeccccccc---CCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe---c
Q 015160 261 PVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---G 334 (412)
Q Consensus 261 ~v~iPDv~p~~~~~~~~~s~~~GDF~ely---~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~---G 334 (412)
.+ .+.+...++.++. ..+...++||+|++.+.|.-.+++..+|+.++++|||||+++-. +
T Consensus 98 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 98 NV--------------KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp TE--------------EEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cc--------------cccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 00 1444444443321 11234689999999988777778899999999999999987632 1
Q ss_pred Cc----chh-hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 335 PL----LYH-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 335 PL----lyh-~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+- +|. +..... .+.....++.+++.+++.+.||..+..
T Consensus 164 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 164 SSGWDKLWKKYGSRFP-QDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp TSHHHHHHHHHGGGSC-CCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred cchHHHHHHHHHHhcC-CCcccccCCHHHHHHHHHHCCCceEEE
Confidence 11 111 111111 111234578999999999999987654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.44 E-value=1.3e-12 Score=122.25 Aligned_cols=143 Identities=16% Similarity=0.114 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|.++..|+++ +-.++++|+ +.|+..++-.+...
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~-------------------------------- 127 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-------------------------------- 127 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc--------------------------------
Confidence 4468999999999999999999 678999998 56776555322110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLYHFADL- 343 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~- 343 (412)
...+++.+..+||.+- . ...||+|+..+.|.. .++....|++|+++|||||.+|-..++.......
T Consensus 128 ------~~~~ri~~~~~d~~~~-~----p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~ 196 (256)
T d1qzza2 128 ------GLADRVTVAEGDFFKP-L----PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 196 (256)
T ss_dssp ------TCTTTEEEEECCTTSC-C----SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------
T ss_pred ------CCcceeeeeeeecccc-c----cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc
Confidence 1123478999998862 1 246999988776543 3557789999999999999888543322110000
Q ss_pred ------cCC---CCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 344 ------YGQ---EDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 344 ------~g~---~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.+. .-....+.|.+|++++++++||++++...
T Consensus 197 ~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~~ 237 (256)
T d1qzza2 197 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT 237 (256)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEEE
Confidence 000 00012456999999999999999998763
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.2e-13 Score=126.67 Aligned_cols=153 Identities=16% Similarity=0.032 Sum_probs=97.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
|+.+.|.+.+. +++.+|||+|||+|..+..+|+++ ..|+|+|+|..|+..|+......
T Consensus 41 ~~~~~la~~~~----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~----------------- 99 (229)
T d1zx0a1 41 PYMHALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ----------------- 99 (229)
T ss_dssp HHHHHHHHHHT----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-----------------
T ss_pred HHHHHHHHhhc----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc-----------------
Confidence 56666665543 256799999999999999999986 57999999999998776322100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE-----ecccCChhhHHHHHHHHHHhccC
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-----CFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT-----~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
..++.+..+|+.++.. +...++||.|+- .+-+....+...+++.++++|||
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~-~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lkp 155 (229)
T d1zx0a1 100 -----------------------THKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 155 (229)
T ss_dssp -----------------------SSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred -----------------------cccccccccccccccc-ccccccccceeecccccccccccccCHHHHHHHHHHHcCC
Confidence 1124455666555432 123578998862 22344556788899999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
||+|+-+.+..+. .......+ .......+.+...+.++||+.+.
T Consensus 156 GG~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~~agF~~~~ 199 (229)
T d1zx0a1 156 GGVLTYCNLTSWG-ELMKSKYS-DITIMFEETQVPALLEAGFRREN 199 (229)
T ss_dssp EEEEEECCHHHHH-HHTTTTCS-CHHHHHHHHTHHHHHHTTCCGGG
T ss_pred CcEEEEEecCCcc-hhhhhhhh-hcchhhhhHHHHHHHHCCCeeEE
Confidence 9999853222111 10000001 01123345666677789997544
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.8e-13 Score=128.68 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=80.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
.+++.|...++. ++.+|||+|||+|.++..|++++ ..++|+|+|..|+..|+...
T Consensus 72 ~~~~~l~~~~~~----~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------------------- 128 (268)
T d1p91a_ 72 AIVAQLRERLDD----KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------------- 128 (268)
T ss_dssp HHHHHHHHHSCT----TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhcCC----CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------------------
Confidence 355666666653 46799999999999999999995 57899999999997554110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
.++.+..+|+.++. ..+++||+|++.+-+.. +++++|+|||||++
T Consensus 129 -------------------------~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l 173 (268)
T d1p91a_ 129 -------------------------PQVTFCVASSHRLP---FSDTSMDAIIRIYAPCK-------AEELARVVKPGGWV 173 (268)
T ss_dssp -------------------------TTSEEEECCTTSCS---BCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEE
T ss_pred -------------------------ccccceeeehhhcc---CCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEE
Confidence 12678899988764 34789999987664432 57799999999999
Q ss_pred EEecC
Q 015160 331 INLGP 335 (412)
Q Consensus 331 IN~GP 335 (412)
|-..|
T Consensus 174 ~~~~p 178 (268)
T d1p91a_ 174 ITATP 178 (268)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 96544
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.41 E-value=9e-13 Score=117.77 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..+|+.+..|+|+|+|..|+..++..++. + .+.
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~----~----------------------~l~----- 100 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKL----N----------------------NLD----- 100 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH----T----------------------TCT-----
T ss_pred CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHH----h----------------------CCc-----
Confidence 567999999999999999999999999999999999887743321 0 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-HHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-IVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i~~yl~~I~~~LKPGG~wI 331 (412)
..++.+..+|+.+.. ..++||+|++..-+....+ +..+++.+.++|||||+++
T Consensus 101 ------~~~i~~~~~d~~~~~----~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 101 ------NYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp ------TSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ------cceEEEEEcchhhhh----ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEE
Confidence 123788999987733 2578999998643333333 5679999999999999875
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.40 E-value=1.4e-12 Score=123.07 Aligned_cols=172 Identities=15% Similarity=0.019 Sum_probs=105.2
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhccccccccccccc
Q 015160 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (412)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~ 245 (412)
..|+.=+.++-..+. -+++.+|||.|||+|.++..||+. | -.|+++|++..|+..|+--+.. +
T Consensus 68 iiypkD~~~Ii~~l~---i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~------~----- 133 (250)
T d1yb2a1 68 IISEIDASYIIMRCG---LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE------F----- 133 (250)
T ss_dssp -------------CC---CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT------T-----
T ss_pred ccCHHHHHHHHHHcC---CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------h-----
Confidence 345544555554443 237889999999999999999986 3 4899999999999777632210 0
Q ss_pred ccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 015160 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (412)
Q Consensus 246 i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LK 325 (412)
....++.+..+|+.+... ++.||+|+. |. ++..++|+.++++||
T Consensus 134 ---------------------------~~~~nv~~~~~Di~~~~~----~~~fD~V~l----d~-p~p~~~l~~~~~~LK 177 (250)
T d1yb2a1 134 ---------------------------YDIGNVRTSRSDIADFIS----DQMYDAVIA----DI-PDPWNHVQKIASMMK 177 (250)
T ss_dssp ---------------------------SCCTTEEEECSCTTTCCC----SCCEEEEEE----CC-SCGGGSHHHHHHTEE
T ss_pred ---------------------------cCCCceEEEEeeeecccc----cceeeeeee----cC-CchHHHHHHHHHhcC
Confidence 011347889999888643 578999963 43 335578999999999
Q ss_pred CCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE-EeeccccCCCCcccc---cccccceEEE-EEE
Q 015160 326 DGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTYTTNPRSM---MQNRYFTAFW-TMR 400 (412)
Q Consensus 326 PGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~-e~~i~s~Y~~d~~sm---~~~~Y~~~f~-Var 400 (412)
|||+++.+.|.. + -.+++...+++.||..++ .+.+...|....+.+ ....=+.-|. +||
T Consensus 178 pGG~lv~~~P~i---~-------------Qv~~~~~~l~~~gf~~i~~~E~~~R~~~~~~~~~RP~~~mvgHTgfl~~ar 241 (250)
T d1yb2a1 178 PGSVATFYLPNF---D-------------QSEKTVLSLSASGMHHLETVELMKRRILVREGATRPASDDLTHTAFITFAI 241 (250)
T ss_dssp EEEEEEEEESSH---H-------------HHHHHHHHSGGGTEEEEEEEEEEECCCCCCTTCCCCGGGGSCEEEEEEEEE
T ss_pred CCceEEEEeCCc---C-------------hHHHHHHHHHHCCCceeEEEEEEeEEEEEcCCccCCCCCCccchhhhhhhc
Confidence 999999765531 0 124555666778998766 334444443322211 1111123455 799
Q ss_pred EcCccc
Q 015160 401 KKSVTI 406 (412)
Q Consensus 401 K~~~~~ 406 (412)
|++..|
T Consensus 242 K~~g~~ 247 (250)
T d1yb2a1 242 KKSGMV 247 (250)
T ss_dssp ECCSCE
T ss_pred ccCCCc
Confidence 987655
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.39 E-value=8.4e-13 Score=117.38 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=91.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++.+||+.+.+|+|+|+|..|+..|+.-+.. .
T Consensus 33 ~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~----~------------------------------ 78 (186)
T d1l3ia_ 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR----H------------------------------ 78 (186)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH----T------------------------------
T ss_pred CCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHH----c------------------------------
Confidence 678999999999999999999999999999999999877732210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~ 348 (412)
....++.+.+||+.+... ..+.||+|+.. ....++.++++.+.+.|||||.++-..+.. +
T Consensus 79 ----gl~~~v~~~~gda~~~~~---~~~~~D~v~~~---~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~---e------- 138 (186)
T d1l3ia_ 79 ----GLGDNVTLMEGDAPEALC---KIPDIDIAVVG---GSGGELQEILRIIKDKLKPGGRIIVTAILL---E------- 138 (186)
T ss_dssp ----TCCTTEEEEESCHHHHHT---TSCCEEEEEES---CCTTCHHHHHHHHHHTEEEEEEEEEEECBH---H-------
T ss_pred ----CCCcceEEEECchhhccc---ccCCcCEEEEe---CccccchHHHHHHHHHhCcCCEEEEEeecc---c-------
Confidence 112358899999988754 25789999764 344567899999999999999887422110 0
Q ss_pred CcccCCCHHHHHHHHHhCCCEEE
Q 015160 349 EMSIELSLEDVKRVALHYGFEFE 371 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~GFeii 371 (412)
+..++.+.+.+.||...
T Consensus 139 ------~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 139 ------TKFEAMECLRDLGFDVN 155 (186)
T ss_dssp ------HHHHHHHHHHHTTCCCE
T ss_pred ------cHHHHHHHHHHcCCCeE
Confidence 23456677888888543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2.7e-12 Score=122.55 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=78.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.|+..+|++|. .|+|+|.|..|+.+++.+.+.
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~---------------------------------- 80 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN---------------------------------- 80 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT----------------------------------
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh----------------------------------
Confidence 456899999999999999999997 799999999987655533211
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....++.++.+|+.++.. ..++||+|++.. ++.....+..++....++|||||+.|
T Consensus 81 -----~~~~~i~~~~~~~~~l~~---~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 81 -----KLEDTITLIKGKIEEVHL---PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCccceEEEeeHHHhcC---ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 012347889999988753 257999999853 44444456678888899999999998
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=2e-12 Score=124.24 Aligned_cols=101 Identities=16% Similarity=0.149 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.|+..+|++|. .|+|+|.|..|..+.+.+. . +
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~-~----n----------------------------- 78 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVK-A----N----------------------------- 78 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHH-H----T-----------------------------
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHH-H----h-----------------------------
Confidence 456899999999999999999995 6999999986654433211 0 1
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++.++.||+.++.. ..++||+|++.. ++.....+..++..+.++|||||++|
T Consensus 79 -----~~~~~v~~~~~~~~~~~~---~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 79 -----KLDHVVTIIKGKVEEVEL---PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp -----TCTTTEEEEESCTTTCCC---SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCccccceEeccHHHccc---ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 112347889999988753 357899999764 35555568899999999999999998
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=5.4e-12 Score=121.58 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=84.5
Q ss_pred HHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccc
Q 015160 166 ERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYP 244 (412)
Q Consensus 166 ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P 244 (412)
.|...|...+......+ ++.+|||+|||+|.|+..+|++|. .|+|+|.|. |+..++.+... +
T Consensus 21 ~r~~~y~~aI~~~~~~~------~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~----~------ 83 (328)
T d1g6q1_ 21 VRTLSYRNAIIQNKDLF------KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVEL----N------ 83 (328)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHH----T------
T ss_pred HHHHHHHHHHHhccccC------CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHH----h------
Confidence 45455555443322322 456999999999999999999997 799999996 55444422211 0
Q ss_pred cccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHH
Q 015160 245 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIIS 321 (412)
Q Consensus 245 ~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~ 321 (412)
....++.++.+|+.++.. ..++||+|++.. ++.....+...+..+.
T Consensus 84 ----------------------------~~~~~i~~i~~~~~~l~~---~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~ 132 (328)
T d1g6q1_ 84 ----------------------------GFSDKITLLRGKLEDVHL---PFPKVDIIISEWMGYFLLYESMMDTVLYARD 132 (328)
T ss_dssp ----------------------------TCTTTEEEEESCTTTSCC---SSSCEEEEEECCCBTTBSTTCCHHHHHHHHH
T ss_pred ----------------------------CccccceEEEeehhhccC---cccceeEEEEEecceeeccchhHHHHHHHHH
Confidence 112347889999988753 257999999853 4566666888999999
Q ss_pred HhccCCcEEE
Q 015160 322 RILKDGGVWI 331 (412)
Q Consensus 322 ~~LKPGG~wI 331 (412)
++|||||+.|
T Consensus 133 r~LkpgG~ii 142 (328)
T d1g6q1_ 133 HYLVEGGLIF 142 (328)
T ss_dssp HHEEEEEEEE
T ss_pred hccCCCeEEE
Confidence 9999999997
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=1.6e-11 Score=116.32 Aligned_cols=169 Identities=16% Similarity=0.142 Sum_probs=114.6
Q ss_pred hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccc
Q 015160 168 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYP 244 (412)
Q Consensus 168 ~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P 244 (412)
+..|++-..+|-..+.- +++.+|||+|||+|.++..||+. +-.|+|+|+|..|+..|+-.+...
T Consensus 85 qiiypkd~~~Ii~~l~i---~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~---------- 151 (266)
T d1o54a_ 85 QIVYPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW---------- 151 (266)
T ss_dssp CCCCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT----------
T ss_pred cccchHHHHHHHHhhCC---CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh----------
Confidence 67888888888887753 37889999999999999999986 348999999999998777433210
Q ss_pred cccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhc
Q 015160 245 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRIL 324 (412)
Q Consensus 245 ~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~L 324 (412)
....++.+..+|+.+-+. ...||.|+ +|. ++..++|+.++++|
T Consensus 152 ----------------------------g~~~~v~~~~~d~~~~~~----~~~~D~V~----~d~-p~p~~~l~~~~~~L 194 (266)
T d1o54a_ 152 ----------------------------GLIERVTIKVRDISEGFD----EKDVDALF----LDV-PDPWNYIDKCWEAL 194 (266)
T ss_dssp ----------------------------TCGGGEEEECCCGGGCCS----CCSEEEEE----ECC-SCGGGTHHHHHHHE
T ss_pred ----------------------------ccccCcEEEecccccccc----ccceeeeE----ecC-CCHHHHHHHHHhhc
Confidence 011235667777654332 46788874 454 45778999999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE-EeeccccCCCC-----cccccccccceEEE-
Q 015160 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTYTTN-----PRSMMQNRYFTAFW- 397 (412)
Q Consensus 325 KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~-e~~i~s~Y~~d-----~~sm~~~~Y~~~f~- 397 (412)
||||.++.+-|..- ..+++.+.+++.||..++ .+.....|-.+ |...+.. ..-|+
T Consensus 195 KpGG~lv~~~P~~~----------------Qv~~~~~~l~~~gF~~i~~~E~l~R~~~~~~~~vRP~~~~vg--HTgfl~ 256 (266)
T d1o54a_ 195 KGGGRFATVCPTTN----------------QVQETLKKLQELPFIRIEVWESLFRPYKPVPERLRPVDRMVA--HTAYMI 256 (266)
T ss_dssp EEEEEEEEEESSHH----------------HHHHHHHHHHHSSEEEEEEECCCCCCEECCTTSCEECSCCCC--CSCEEE
T ss_pred CCCCEEEEEeCccc----------------HHHHHHHHHHHCCceeEEEEEEEEEEEEecCCccCCCCCCcc--hHHHHH
Confidence 99999997655321 235677778889998766 23333333222 2222221 34465
Q ss_pred EEEEcCc
Q 015160 398 TMRKKSV 404 (412)
Q Consensus 398 VarK~~~ 404 (412)
+|||-..
T Consensus 257 ~ark~~~ 263 (266)
T d1o54a_ 257 FATKVCR 263 (266)
T ss_dssp EEEECSC
T ss_pred Hheeccc
Confidence 5888653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.24 E-value=4.9e-11 Score=108.87 Aligned_cols=142 Identities=14% Similarity=0.047 Sum_probs=86.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 188 ESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
+++.+|||+|||+|.++..||+. | -.|+|+|+|+.|+..++...+ +
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~---~----------------------------- 102 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR---E----------------------------- 102 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH---H-----------------------------
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhh---c-----------------------------
Confidence 47889999999999999999986 2 379999999999976652221 1
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc-cCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhcc
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF-IDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLY 344 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF-IDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~ 344 (412)
..++.++.+|....... ...+|.|..+|- +....+...++.+++++|||||+++-. .+.-..+.
T Consensus 103 ---------~~ni~~i~~d~~~~~~~---~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~---~~~~~~d~ 167 (209)
T d1nt2a_ 103 ---------RNNIIPLLFDASKPWKY---SGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM---VKARSIDS 167 (209)
T ss_dssp ---------CSSEEEECSCTTCGGGT---TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE---EEHHHHCT
T ss_pred ---------cCCceEEEeeccCcccc---ccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEE---EEccccCC
Confidence 01356677776654331 233444333221 223345678899999999999999742 12111110
Q ss_pred CCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCC
Q 015160 345 GQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (412)
Q Consensus 345 g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~ 382 (412)
. .+ . +-..++....+ +.||+++++.. ..+|-.
T Consensus 168 ~-~~--~-~~~~~~~~~~l-~~gf~i~E~i~-L~P~~~ 199 (209)
T d1nt2a_ 168 T-AE--P-EEVFKSVLKEM-EGDFKIVKHGS-LMPYHR 199 (209)
T ss_dssp T-SC--H-HHHHHHHHHHH-HTTSEEEEEEE-CTTTCT
T ss_pred C-CC--H-HHHHHHHHHHH-HcCCEEEEEEc-cCCCcc
Confidence 0 11 1 11223333444 36999987543 335543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.22 E-value=1.6e-10 Score=107.08 Aligned_cols=178 Identities=19% Similarity=0.133 Sum_probs=104.7
Q ss_pred HHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhh
Q 015160 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fil 231 (412)
=+|-|... |. .+-..|.+-+....-.++.+|||+|||+|.++..||+. | -.|+|+|+|..|+..+....
T Consensus 47 e~R~w~p~----rS----Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a 118 (227)
T d1g8aa_ 47 EYRIWNPN----RS----KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV 118 (227)
T ss_dssp EEEECCTT----TC----HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH
T ss_pred eEEEECCC----cc----HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH
Confidence 38889753 32 34455555444333458899999999999999999987 3 58999999999997655322
Q ss_pred hcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh
Q 015160 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311 (412)
Q Consensus 232 n~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~ 311 (412)
+ +. .++..+.+|.......+.....+|+|+..+. ...
T Consensus 119 ~---~~--------------------------------------~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~--~~~ 155 (227)
T d1g8aa_ 119 E---ER--------------------------------------RNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPT 155 (227)
T ss_dssp S---SC--------------------------------------TTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STT
T ss_pred H---hc--------------------------------------CCceEEEEECCCcccccccccceEEEEEEcc--ccc
Confidence 1 10 1133344454432221122356787754332 234
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccc
Q 015160 312 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNR 391 (412)
Q Consensus 312 Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~ 391 (412)
+....++.+++.|||||+++-. ++.-..+....+ +--..++..++ +.||++++.-. ..+|-.+
T Consensus 156 ~~~~~l~~~~~~LkpgG~lvi~---~ka~~~~~~~~~----~~v~~~v~~l~-~~gf~iie~i~-L~p~~~~-------- 218 (227)
T d1g8aa_ 156 QAKILIDNAEVYLKRGGYGMIA---VKSRSIDVTKEP----EQVFREVEREL-SEYFEVIERLN-LEPYEKD-------- 218 (227)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE---EEGGGTCTTSCH----HHHHHHHHHHH-HTTSEEEEEEE-CTTTSSS--------
T ss_pred hHHHHHHHHHHhcccCCeEEEE---EECCccCCCCCH----HHHHHHHHHHH-HcCCEEEEEEc-CCCCCCc--------
Confidence 5667899999999999999741 111100000011 11224556655 45999986432 3455332
Q ss_pred cceEEEEEEEc
Q 015160 392 YFTAFWTMRKK 402 (412)
Q Consensus 392 Y~~~f~VarK~ 402 (412)
-..+|+||.
T Consensus 219 --H~~vv~rK~ 227 (227)
T d1g8aa_ 219 --HALFVVRKT 227 (227)
T ss_dssp --EEEEEEECC
T ss_pred --eEEEEEEeC
Confidence 245678874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.14 E-value=4.5e-11 Score=113.47 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=96.2
Q ss_pred cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcc
Q 015160 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHT 234 (412)
Q Consensus 158 DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~ 234 (412)
||...-+..=+..|++-+..|-..+.-. ++.+|||.|||+|.++..||+. | -.|+++|++..|+..|+--+...
T Consensus 68 ~~~~~~~r~tqiiypkD~s~Ii~~l~i~---PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~ 144 (264)
T d1i9ga_ 68 DYVMSMPRGPQVIYPKDAAQIVHEGDIF---PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC 144 (264)
T ss_dssp HHHTTSCSCSCCCCHHHHHHHHHHTTCC---TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHhhccCCccccchHHHHHHHHHhCCC---CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhh
Confidence 3443333334678999999988877533 7889999999999999999987 3 48999999999998776322110
Q ss_pred cccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHH
Q 015160 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 314 (412)
Q Consensus 235 ~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~ 314 (412)
.. ....++.+..+|+.+... .++.||+|+ +|. ++..
T Consensus 145 ~~------------------------------------~~~~nv~~~~~d~~~~~~---~~~~fDaV~----ldl-p~P~ 180 (264)
T d1i9ga_ 145 YG------------------------------------QPPDNWRLVVSDLADSEL---PDGSVDRAV----LDM-LAPW 180 (264)
T ss_dssp HT------------------------------------SCCTTEEEECSCGGGCCC---CTTCEEEEE----EES-SCGG
T ss_pred cc------------------------------------CCCceEEEEecccccccc---cCCCcceEE----Eec-CCHH
Confidence 00 012347889999887532 368999985 453 4566
Q ss_pred HHHHHHHHhccCCcEEEEecC
Q 015160 315 EYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 315 ~yl~~I~~~LKPGG~wIN~GP 335 (412)
++++.++++|||||.|+.+-|
T Consensus 181 ~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 181 EVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GGHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHhccCCCCEEEEEeC
Confidence 899999999999999997555
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1e-10 Score=113.28 Aligned_cols=125 Identities=11% Similarity=0.092 Sum_probs=83.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
.+..+-+.+.- .++.+|||+|||+|+++..+|+. |. .|.|+|+|..|+..|+-.++.....- ..
T Consensus 139 ~~~~~~~~~~l---~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~--~~--------- 204 (328)
T d1nw3a_ 139 LVAQMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM--KW--------- 204 (328)
T ss_dssp HHHHHHHHSCC---CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHH--HH---------
T ss_pred HHHHHHHHcCC---CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHh--hh---------
Confidence 44444444432 25679999999999999999876 66 59999999999988875554321100 00
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCc--cEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAW--DAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~f--D~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
-++. ..++.+..|||.++.. .+..+ |+|+...++. .+++...|.++++.|||||.
T Consensus 205 --------~g~~-----------~~~i~~~~gd~~~~~~---~~~~~~advi~~~~~~f-~~~~~~~l~e~~r~LKpGg~ 261 (328)
T d1nw3a_ 205 --------YGKK-----------HAEYTLERGDFLSEEW---RERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGR 261 (328)
T ss_dssp --------HTCC-----------CCCEEEEECCTTSHHH---HHHHHHCSEEEECCTTT-CHHHHHHHHHHHTTCCTTCE
T ss_pred --------cccc-----------CCceEEEECccccccc---ccccCcceEEEEcceec-chHHHHHHHHHHHhCCCCcE
Confidence 0000 1248899999987642 23345 4555433332 35688999999999999999
Q ss_pred EEEecC
Q 015160 330 WINLGP 335 (412)
Q Consensus 330 wIN~GP 335 (412)
+|..-+
T Consensus 262 iv~~~~ 267 (328)
T d1nw3a_ 262 IVSSKP 267 (328)
T ss_dssp EEESSC
T ss_pred EEEecc
Confidence 997443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=1.8e-10 Score=104.97 Aligned_cols=110 Identities=17% Similarity=0.112 Sum_probs=78.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
+-++..+-+.+.- +++.+|||+|||+|+++..||++ +-.|+++|++..|+..|+..+...
T Consensus 61 P~~~a~~l~~l~l---~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~-------------- 123 (213)
T d1dl5a1 61 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL-------------- 123 (213)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT--------------
T ss_pred chhhHHHHHhhhc---cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh--------------
Confidence 3344545554432 36789999999999999999986 347999999999998877444211
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCc
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
...++.+..+|..+.+. ..++||+|+..+-+...+ +.+.+.|||||
T Consensus 124 -------------------------~~~n~~~~~~d~~~~~~---~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG 169 (213)
T d1dl5a1 124 -------------------------GIENVIFVCGDGYYGVP---EFSPYDVIFVTVGVDEVP------ETWFTQLKEGG 169 (213)
T ss_dssp -------------------------TCCSEEEEESCGGGCCG---GGCCEEEEEECSBBSCCC------HHHHHHEEEEE
T ss_pred -------------------------cccccccccCchHHccc---cccchhhhhhhccHHHhH------HHHHHhcCCCc
Confidence 01236678888877543 357899998877665443 35678899999
Q ss_pred EEEE
Q 015160 329 VWIN 332 (412)
Q Consensus 329 ~wIN 332 (412)
++|-
T Consensus 170 ~lv~ 173 (213)
T d1dl5a1 170 RVIV 173 (213)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.09 E-value=2e-10 Score=104.56 Aligned_cols=102 Identities=12% Similarity=0.129 Sum_probs=73.4
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+..|||+|||+|+.+..||++. ..++|+|+|..|+..+.-... +.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~---~~------------------------------ 76 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK---DS------------------------------ 76 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH---HS------------------------------
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHH---HH------------------------------
Confidence 4589999999999999999994 789999999999975542111 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hh---H---HHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HN---I---VEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~N---i---~~yl~~I~~~LKPGG~wI 331 (412)
...|+.++.||+..+.. -...+++|.|...|-..-. .. . .++|+.++++|||||.+.
T Consensus 77 ------~l~Nv~~~~~Da~~l~~-~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~ 141 (204)
T d2fcaa1 77 ------EAQNVKLLNIDADTLTD-VFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIH 141 (204)
T ss_dssp ------CCSSEEEECCCGGGHHH-HCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEE
T ss_pred ------hccCchhcccchhhhhc-ccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEE
Confidence 01358899999877641 1236889998765532111 11 0 379999999999999986
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.4e-10 Score=106.88 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=80.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.+...+.+.+... -+++.+||++|||+|+++..||++ ...|+|+|.+..|+..|+..+.+..- .
T Consensus 61 ~~~a~~le~L~~~-l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~----~-------- 127 (224)
T d1i1na_ 61 HMHAYALELLFDQ-LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP----T-------- 127 (224)
T ss_dssp HHHHHHHHHTTTT-SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCT----H--------
T ss_pred HHHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCc----c--------
Confidence 3444444444211 126789999999999999999986 46899999999999887754432100 0
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
.+. ..++.+..||..+.+. ..+.||+|+...-++..+ +.+.+.|||||+
T Consensus 128 -----------~~~-----------~~~~~~~~gD~~~~~~---~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~ 176 (224)
T d1i1na_ 128 -----------LLS-----------SGRVQLVVGDGRMGYA---EEAPYDAIHVGAAAPVVP------QALIDQLKPGGR 176 (224)
T ss_dssp -----------HHH-----------TSSEEEEESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEEE
T ss_pred -----------ccc-----------ccceEEEEeecccccc---hhhhhhhhhhhcchhhcC------HHHHhhcCCCcE
Confidence 000 1236788899877543 357899998876665543 357789999999
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
+|-
T Consensus 177 LV~ 179 (224)
T d1i1na_ 177 LIL 179 (224)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.01 E-value=9.5e-10 Score=103.52 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++|. .|+|+|+|+.++..++--+. .+
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~----~n----------------------------- 153 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH----LN----------------------------- 153 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHH----HT-----------------------------
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHH----Hh-----------------------------
Confidence 567999999999999999999995 89999999999866552111 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
...+++.++.||.+++.. .+.||.|+.. ..+.-.++++...++|||||++.- |.+...
T Consensus 154 -----~l~~~v~~~~~D~~~~~~----~~~~D~Ii~~----~p~~~~~~l~~a~~~l~~gG~lh~-----~~~~~~---- 211 (260)
T d2frna1 154 -----KVEDRMSAYNMDNRDFPG----ENIADRILMG----YVVRTHEFIPKALSIAKDGAIIHY-----HNTVPE---- 211 (260)
T ss_dssp -----TCTTTEEEECSCTTTCCC----CSCEEEEEEC----CCSSGGGGHHHHHHHEEEEEEEEE-----EEEEEG----
T ss_pred -----CCCceEEEEEcchHHhcc----CCCCCEEEEC----CCCchHHHHHHHHhhcCCCCEEEE-----Eecccc----
Confidence 112347889999988743 4789988743 333345788889999999997631 222111
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
........+.+.++....||++...
T Consensus 212 -~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 212 -KLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp -GGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred -ccchhhHHHHHHHHHHHcCCceEEE
Confidence 0122345678888999999998653
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.00 E-value=1e-09 Score=101.52 Aligned_cols=107 Identities=20% Similarity=0.093 Sum_probs=77.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+...+.+.+.- +++.+||++|||+|+++..||+++..|+++|++..++..|+-.+..
T Consensus 57 ~~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~------------------- 114 (224)
T d1vbfa_ 57 NLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY------------------- 114 (224)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT-------------------
T ss_pred hhHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc-------------------
Confidence 343444444432 3678999999999999999999999999999999998776632210
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.+..+|...-+. ..+.||+|+...-+...+ +.+.+.|||||++|-
T Consensus 115 ----------------------~~nv~~~~~d~~~g~~---~~~pfD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 115 ----------------------YNNIKLILGDGTLGYE---EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMIL 163 (224)
T ss_dssp ----------------------CSSEEEEESCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred ----------------------ccccccccCchhhcch---hhhhHHHHHhhcchhhhh------HHHHHhcCCCCEEEE
Confidence 1237889999776543 257899998655444332 456688999999985
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.99 E-value=1.7e-09 Score=98.33 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
....|||+|||+|.++..+|+. ...+.|+|+|..|+..+.- .+.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~---~~~~~----------------------------- 78 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD---KVLEV----------------------------- 78 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH---HHHHH-----------------------------
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHH---hhhhh-----------------------------
Confidence 3458999999999999999998 5789999999999865431 11110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh---------HHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---------IVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N---------i~~yl~~I~~~LKPGG~wI 331 (412)
...|+.++.+|+.++.. -...+++|.|+.+ |-|.-+. -.++|+.++++|||||.+.
T Consensus 79 -------~l~Ni~~~~~da~~l~~-~~~~~~~~~i~i~-fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 79 -------GVPNIKLLWVDGSDLTD-YFEDGEIDRLYLN-FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp -------CCSSEEEEECCSSCGGG-TSCTTCCSEEEEE-SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEE
T ss_pred -------ccccceeeecCHHHHhh-hccCCceehhccc-ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEE
Confidence 01247889999887642 1236789988644 4443111 0479999999999999986
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=3.3e-10 Score=110.16 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=87.7
Q ss_pred hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccccccccc
Q 015160 168 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYP 244 (412)
Q Consensus 168 ~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P 244 (412)
+..|++=+..+-.++.- +++.+|||.|||.|.++..||+. | -.|+++|++..|+..|+--+...... ..
T Consensus 80 qiiypkD~~~Il~~l~i---~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~--~~--- 151 (324)
T d2b25a1 80 AITFPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS--WK--- 151 (324)
T ss_dssp CCCCHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH--HT---
T ss_pred cccccccHHHHHHHhCC---CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhh--hh---
Confidence 45777777776666542 37889999999999999999986 3 37999999999998777433211000 00
Q ss_pred cccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhc
Q 015160 245 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRIL 324 (412)
Q Consensus 245 ~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~L 324 (412)
...+ .....++.+..+|+.+... ....+.||+|+ ||.. +..++|+.++++|
T Consensus 152 ----------------~~~~-------~~~~~nv~~~~~di~~~~~-~~~~~~fD~V~----LD~p-~P~~~l~~~~~~L 202 (324)
T d2b25a1 152 ----------------LSHV-------EEWPDNVDFIHKDISGATE-DIKSLTFDAVA----LDML-NPHVTLPVFYPHL 202 (324)
T ss_dssp ----------------TTCS-------SCCCCCEEEEESCTTCCC--------EEEEE----ECSS-STTTTHHHHGGGE
T ss_pred ----------------hhhh-------hccccceeEEecchhhccc-ccCCCCcceEe----ecCc-CHHHHHHHHHHhc
Confidence 0000 0123568899999877542 12346799985 5643 3557899999999
Q ss_pred cCCcEEEEecC
Q 015160 325 KDGGVWINLGP 335 (412)
Q Consensus 325 KPGG~wIN~GP 335 (412)
||||+++-+-|
T Consensus 203 KpGG~lv~~~P 213 (324)
T d2b25a1 203 KHGGVCAVYVV 213 (324)
T ss_dssp EEEEEEEEEES
T ss_pred cCCCEEEEEeC
Confidence 99999997555
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=1.5e-09 Score=108.62 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=74.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..+|+. |. .|+|+|+|..|+..|+......... ... | ..+
T Consensus 216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~--~~~--~---------------g~~--- 273 (406)
T d1u2za_ 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR--CKL--Y---------------GMR--- 273 (406)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHH--HHH--T---------------TBC---
T ss_pred CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhh--hhh--h---------------ccc---
Confidence 6789999999999999999977 65 7999999999999888554322110 000 0 000
Q ss_pred CCCCCCCCCCceeE-EecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 267 IHPASAGITEGFSM-CGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 267 v~p~~~~~~~~~s~-~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
...+.+ ..++|.+.......-...|+|+...++. .+++...|.++++.|||||.+|..-+
T Consensus 274 --------~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f-~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 274 --------LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp --------CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred --------cccceeeeeechhhccccccccccceEEEEecccC-chHHHHHHHHHHHhcCCCcEEEEecc
Confidence 001122 3455553211000113467776544443 35688999999999999999997433
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1e-08 Score=97.38 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+|||+|||+|-++..||+.- ..|+|+|+|...|..|+.-.+. .
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~----~---------------------------- 155 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH----L---------------------------- 155 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH----H----------------------------
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH----h----------------------------
Confidence 45789999999999999998874 5899999999999888733211 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCCh------------------------hhHHHHHHHHH
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTA------------------------HNIVEYIEIIS 321 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta------------------------~Ni~~yl~~I~ 321 (412)
. ..++.++.+|+.+... .++||+||++ =||.+. .-+...++...
T Consensus 156 ------~-~~~v~~~~~d~~~~~~----~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~ 224 (274)
T d2b3ta1 156 ------A-IKNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSR 224 (274)
T ss_dssp ------T-CCSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHG
T ss_pred ------C-cccceeeecccccccC----CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHH
Confidence 0 0237889999887432 4689999987 244321 12345677778
Q ss_pred HhccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 322 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 322 ~~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
++|+|||.++- +|+ --.+.+.+++++.||..++
T Consensus 225 ~~L~~~G~l~lEig~------------------~q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 225 NALVSGGFLLLEHGW------------------QQGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp GGEEEEEEEEEECCS------------------SCHHHHHHHHHHTTCTTCC
T ss_pred HhcCCCCEEEEEECc------------------hHHHHHHHHHHHCCCCeEE
Confidence 99999999884 222 1247889999999997544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=7e-09 Score=99.96 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|..+..+|+.|. .|+++|+|..++..++..+.. +
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~----n----------------------------- 191 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL----N----------------------------- 191 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHH----c-----------------------------
Confidence 467999999999999999999997 799999999999777522110 0
Q ss_pred CCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEe--cccCChh-------hHHHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FFIDTAH-------NIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~--FFIDta~-------Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|+.+... .+...++||+|+.- .|..... +..+.+....++|||||++|-
T Consensus 192 -----gl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~ 261 (324)
T d2as0a2 192 -----GVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 261 (324)
T ss_dssp -----TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----CCCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 011247889999876421 01124789999863 3444332 234467788899999999984
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.81 E-value=6e-09 Score=89.73 Aligned_cols=99 Identities=21% Similarity=0.186 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.+|||+|||+|.++.+.+.+|. .|+++|.+..++..++.-+...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~--------------------------------- 60 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT--------------------------------- 60 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT---------------------------------
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhc---------------------------------
Confidence 467999999999999999999997 7999999999987655222100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---hhHHHHHHHHH--HhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIIS--RILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---~Ni~~yl~~I~--~~LKPGG~wI 331 (412)
...+++.++.+|..++.. ...++||+| |+|.. ......++.|. ++|+|||+.|
T Consensus 61 -----~~~~~~~ii~~D~~~~l~--~~~~~fDiI----f~DPPy~~~~~~~~l~~i~~~~~L~~~g~ii 118 (152)
T d2esra1 61 -----KAENRFTLLKMEAERAID--CLTGRFDLV----FLDPPYAKETIVATIEALAAKNLLSEQVMVV 118 (152)
T ss_dssp -----TCGGGEEEECSCHHHHHH--HBCSCEEEE----EECCSSHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----ccccchhhhccccccccc--cccccccee----EechhhccchHHHHHHHHHHCCCcCCCeEEE
Confidence 112347889999877432 235789998 44542 22445566665 5699999987
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.78 E-value=4.9e-09 Score=96.56 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--------CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcc
Q 015160 189 SPPACLVPGAGLGRLALEISHL--------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr 260 (412)
++.+||++|||+|+++.-||+. +.+|+++|.+..|+..|+..++.....
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~----------------------- 136 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS----------------------- 136 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-----------------------
Confidence 6789999999999999888876 358999999999998777544321000
Q ss_pred ccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 261 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 261 ~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
... ..++.+..+|..+.+. ..+.||+|+...-++..+ +.+.+.|||||++|-
T Consensus 137 ~~~-----------~~nv~~~~~d~~~~~~---~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 137 MLD-----------SGQLLIVEGDGRKGYP---PNAPYNAIHVGAAAPDTP------TELINQLASGGRLIV 188 (223)
T ss_dssp HHH-----------HTSEEEEESCGGGCCG---GGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEE
T ss_pred hcC-----------ccEEEEEecccccccc---cccceeeEEEEeechhch------HHHHHhcCCCcEEEE
Confidence 000 1247889999887654 357899998776666554 246789999999986
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=6.3e-09 Score=91.57 Aligned_cols=41 Identities=22% Similarity=0.052 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~f 229 (412)
.+.+|||+|||+|.++.+.+.+|..|+++|.|..|+..++.
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~ 81 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKE 81 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHH
T ss_pred CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhH
Confidence 45699999999999999999999999999999999977663
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=9.6e-09 Score=98.91 Aligned_cols=105 Identities=13% Similarity=-0.006 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||++||+|.++..+|+.|..|+++|+|..||..++..+.. + +
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~----n----------------------g------- 191 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL----N----------------------G------- 191 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHH----c----------------------C-------
Confidence 456999999999999999999889999999999999877633211 0 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEe--cccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~--FFIDta-------~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
-.++.++++|..++.. .+...++||+|+.- .|.... ....+.+....++|||||++|-
T Consensus 192 ------l~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~ 259 (318)
T d1wxxa2 192 ------LGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT 259 (318)
T ss_dssp ------CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ------CCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0136788888876421 01124789999864 232222 2233567788899999999984
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.71 E-value=3.4e-08 Score=90.49 Aligned_cols=96 Identities=19% Similarity=0.066 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+||++|||+|+++..||+. |-.|+++|....|+..|+-.+...
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~--------------------------------- 124 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA--------------------------------- 124 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT---------------------------------
T ss_pred ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHc---------------------------------
Confidence 6779999999999999999987 878999999999998877544321
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
...++.+..||..+-.. ..+.||+|+...-++..+ ..+.+.|||||.+|-
T Consensus 125 ------g~~nv~~~~gd~~~g~~---~~~pfD~Iiv~~a~~~ip------~~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 125 ------GVKNVHVILGDGSKGFP---PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLII 174 (215)
T ss_dssp ------TCCSEEEEESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred ------CCceeEEEECccccCCc---ccCcceeEEeecccccCC------HHHHHhcCCCCEEEE
Confidence 01347889999877543 368899998765555443 235568999999985
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=5.8e-08 Score=87.45 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (412)
.+.+|||+|||+|.++.+++.+|. .|+|+|+|..++..++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~ 86 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI 86 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH
Confidence 567999999999999999999996 7999999999998776
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.65 E-value=7.8e-08 Score=89.32 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=94.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
..+.|.+.++.. ....+|||+|||+|.++..|+++ +-+++..|+-. .+ ...
T Consensus 68 ~~~~l~~~~~~f--~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~----------------- 120 (244)
T d1fp1d2 68 EMKRMLEIYTGF--EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI-------ENA----------------- 120 (244)
T ss_dssp HHHHHHHHCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTC-----------------
T ss_pred HHHHHHHhcccc--cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh-------hcc-----------------
Confidence 344455555522 14569999999999999999998 67788888743 21 100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~ 329 (412)
....++++..|||++-. | ..|+|+....|. ..++....|+.+++.|+|||.
T Consensus 121 ---------------------~~~~ri~~~~gd~~~~~--p----~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~ 173 (244)
T d1fp1d2 121 ---------------------PPLSGIEHVGGDMFASV--P----QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGK 173 (244)
T ss_dssp ---------------------CCCTTEEEEECCTTTCC--C----CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred ---------------------CCCCCeEEecCCccccc--c----cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 01134889999998632 2 349988665443 445678899999999999998
Q ss_pred EEEecCcc------hh------hhh-----ccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 330 WINLGPLL------YH------FAD-----LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 330 wIN~GPLl------yh------~~~-----~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+|-...++ .. .-+ ..+ .-+.|.+|++++++++||+.++.
T Consensus 174 llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~-----g~ert~~e~~~ll~~AGF~~v~v 229 (244)
T d1fp1d2 174 VIIVEFILPEEPNTSEESKLVSTLDNLMFITVG-----GRERTEKQYEKLSKLSGFSKFQV 229 (244)
T ss_dssp EEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS-----CCCEEHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEEecCCCCCchHHHHHHHHHHHHHhhCC-----CcCCCHHHHHHHHHHcCCCceEE
Confidence 87432111 00 000 011 23568999999999999998874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.65 E-value=1.8e-08 Score=91.34 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=36.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (412)
.+.+|||+|||+|.|+..++++|. .|+|+|++..++..|+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar 88 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK 88 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHH
Confidence 567999999999999999999997 4999999999997766
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.64 E-value=1.1e-07 Score=86.60 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEe
Q 015160 144 DVDKVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNE 218 (412)
Q Consensus 144 d~~kv~s~L~q~~R--DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD 218 (412)
|=+.|-.++.++++ +|.-.-.+|.- .++..|-+.. ++.+||++|||+|+-+..||+. |-+|+++|
T Consensus 19 ~p~~vl~~~~~~~~~~~~~m~i~~~~G----~lL~~lv~~~------kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid 88 (214)
T d2cl5a1 19 DPQSVLEAIDTYCTQKEWAMNVGDAKG----QIMDAVIREY------SPSLVLELGAYCGYSAVRMARLLQPGARLLTME 88 (214)
T ss_dssp CHHHHHHHHHHHHHHTCCCCSCHHHHH----HHHHHHHHHH------CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCccccCHHHH----HHHHHHHHhh------CCCEEEEEccCchhHHHHHHHhCCCccEEEEEe
Confidence 33567777777764 57655444443 2666665543 4568999999999999999974 77999999
Q ss_pred CCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCC
Q 015160 219 FSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQV 295 (412)
Q Consensus 219 ~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~ 295 (412)
++..|+..|+..+..+ ...+++.+..||..++... ....
T Consensus 89 ~~~~~~~~a~~~~~~~--------------------------------------gl~~~i~l~~Gd~~e~l~~l~~~~~~ 130 (214)
T d2cl5a1 89 MNPDYAAITQQMLNFA--------------------------------------GLQDKVTILNGASQDLIPQLKKKYDV 130 (214)
T ss_dssp SCHHHHHHHHHHHHHH--------------------------------------TCGGGEEEEESCHHHHGGGHHHHSCC
T ss_pred ccHHHHHHHHHHHHHc--------------------------------------CCCccceeeeccccccccchhhcccc
Confidence 9999998776443221 1123478899998875320 0123
Q ss_pred CCccEEEEecccCChhh---HHHHHHHHHHhccCCcEEEEecCcch
Q 015160 296 GAWDAVVTCFFIDTAHN---IVEYIEIISRILKDGGVWINLGPLLY 338 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~N---i~~yl~~I~~~LKPGG~wIN~GPLly 338 (412)
+.||+| |||..++ ...++....++|||||++|- ...+|
T Consensus 131 ~~~D~i----fiD~~~~~~~~~~~l~~~~~lLkpGGvIv~-Ddvl~ 171 (214)
T d2cl5a1 131 DTLDMV----FLDHWKDRYLPDTLLLEKCGLLRKGTVLLA-DNVIV 171 (214)
T ss_dssp CCEEEE----EECSCGGGHHHHHHHHHHTTCEEEEEEEEE-SCCCC
T ss_pred ccccee----eecccccccccHHHHHHHhCccCCCcEEEE-eCcCC
Confidence 578877 5675433 23357777889999998773 33444
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.62 E-value=1.6e-07 Score=86.60 Aligned_cols=134 Identities=17% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||.|.++..|+++ +-++++.|+..- + ..+
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~-------------------------------- 120 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDA-------------------------------- 120 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTC--------------------------------
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhc--------------------------------
Confidence 3468999999999999999998 678888888541 1 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhh----
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF---- 340 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~---- 340 (412)
....++.+..+||++-. | . -|+++... .....++....|+++++.|||||.++-...++-.-
T Consensus 121 ------~~~~r~~~~~~d~~~~~--P--~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~ 188 (243)
T d1kyza2 121 ------PSYPGVEHVGGDMFVSI--P--K--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSS 188 (243)
T ss_dssp ------CCCTTEEEEECCTTTCC--C--C--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCC
T ss_pred ------ccCCceEEecccccccC--C--C--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCc
Confidence 01134789999997632 2 2 24443322 33455668889999999999999887543321100
Q ss_pred --------hhccC-CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 341 --------ADLYG-QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 341 --------~~~~g-~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-+..- .......+.|.+|++++++++||+.++-.
T Consensus 189 ~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~ 231 (243)
T d1kyza2 189 LATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 231 (243)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred hhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence 00000 00001346789999999999999988743
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.54 E-value=5.5e-07 Score=83.37 Aligned_cols=132 Identities=15% Similarity=0.175 Sum_probs=89.4
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..++++ +-+++..|+.. .+ ..+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~--------------------------------- 119 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VV-------ENL--------------------------------- 119 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTC---------------------------------
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HH-------HhC---------------------------------
Confidence 458999999999999999998 67899999853 21 100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC---cEEEEecCcc-----
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG---GVWINLGPLL----- 337 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPG---G~wIN~GPLl----- 337 (412)
...+++++..|||.+- . ..+|+++....|+ ..++..+.|+.+++.|+|| |.+|-+..++
T Consensus 120 -----~~~~rv~~~~gD~f~~-~-----p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~ 188 (244)
T d1fp2a2 120 -----SGSNNLTYVGGDMFTS-I-----PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKD 188 (244)
T ss_dssp -----CCBTTEEEEECCTTTC-C-----CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTS
T ss_pred -----cccCceEEEecCcccC-C-----CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCC
Confidence 1123589999999862 1 2469988776554 4556778999999999998 5554322211
Q ss_pred ----hhh---hhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 338 ----YHF---ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 338 ----yh~---~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
... -+. .-.-...-+.|.+|++++++++||+.++..
T Consensus 189 ~~~~~~~~~~~dl-~m~~~~G~ert~~e~~~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 189 ENQVTQIKLLMDV-NMACLNGKERNEEEWKKLFIEAGFQHYKIS 231 (244)
T ss_dssp CHHHHHHHHHHHH-HGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred CchHHHHHHHHHH-HHHhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence 000 000 000001235689999999999999998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.53 E-value=1.3e-07 Score=84.45 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=72.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHHhhhhcccccccc-cccccc-cccCCCCCcc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEW-NIYPWI-HSNCNSLSDS 256 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~-~I~P~i-~~~sn~~s~~ 256 (412)
+..|||..|||+|.-++.||.. -+.++|.|+|..+|..|+--. -..... .+-|-. ..+-......
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~---y~~~~~~~~~~~~~~~yf~~~~~~ 100 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI---YRLSELKTLSPQQLQRYFMRGTGP 100 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE---EEGGGGTTSCHHHHHHHEEECCTT
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCc---ccHHHHhhhhHHHHhhceeecCCC
Confidence 5679999999999988777643 247999999999998776211 000000 000000 0000000000
Q ss_pred cCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 257 DQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 257 ~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
. ... ..+.+ .....+.+...+..+... ...+.||+|++-+. ++. +...+.++.++++|||||+++ +
T Consensus 101 ~---~~~-~~~~~---~~~~~v~~~~~~~~~~~~--~~~~~fDvI~CRNVLiYf~~-~~~~~vl~~l~~~L~pGG~L~-l 169 (193)
T d1af7a2 101 H---EGL-VRVRQ---ELANYVEFSSVNLLEKQY--NVPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLF-A 169 (193)
T ss_dssp S---CSE-EEECH---HHHTTEEEEECCTTCSSC--CCCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEE-E
T ss_pred c---cce-eehHH---HHHHHHHHhhhhcccccc--CCCCCccEEEeehhHHhcCH-HHHHHHHHHHHHHhCCCcEEE-E
Confidence 0 000 00000 001124555555544221 23578999998763 443 346789999999999999987 4
Q ss_pred c
Q 015160 334 G 334 (412)
Q Consensus 334 G 334 (412)
|
T Consensus 170 G 170 (193)
T d1af7a2 170 G 170 (193)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.48 E-value=7.3e-07 Score=84.52 Aligned_cols=151 Identities=16% Similarity=0.116 Sum_probs=92.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc----C---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----G---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~ 261 (412)
++.+|||||||+|.+...++.+ + ..+.|+|++..|+..|+..+... .
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~--------------------------~ 170 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------------------------R 170 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH--------------------------T
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh--------------------------h
Confidence 5678999999999998887642 3 26889999999998776332110 0
Q ss_pred cccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--ccc---------------CChhhH-HHHHHHHHHh
Q 015160 262 VSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI---------------DTAHNI-VEYIEIISRI 323 (412)
Q Consensus 262 v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFI---------------Dta~Ni-~~yl~~I~~~ 323 (412)
.+..+..+|..... ..++||+|++. |-. ....+. .-+++.+.+.
T Consensus 171 --------------~~~~~~~~d~~~~~----~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~ 232 (328)
T d2f8la1 171 --------------QKMTLLHQDGLANL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY 232 (328)
T ss_dssp --------------CCCEEEESCTTSCC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred --------------hhhhhhcccccccc----ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHh
Confidence 01345566655432 24789999987 311 001111 2368889999
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE-eeccccCCCCcccccccccceEEEEEEEc
Q 015160 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE-KTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 324 LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e-~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
|||||+.+-+-|--+-. .-+.+.+++.|.+. +.++.- ......+. + ....+..||.+|+
T Consensus 233 Lk~~G~~~~I~p~~~l~------------~~~~~~lR~~L~~~-~~i~~ii~lp~~~F~-~------~~~~t~ilvl~K~ 292 (328)
T d2f8la1 233 TKPGGYLFFLVPDAMFG------------TSDFAKVDKFIKKN-GHIEGIIKLPETLFK-S------EQARKSILILEKA 292 (328)
T ss_dssp EEEEEEEEEEEEGGGGG------------STTHHHHHHHHHHH-EEEEEEEECCGGGSC-C-------CCCEEEEEEEEC
T ss_pred cCCCCceEEEecCcccc------------CchhHHHHHHHHhC-CcEEEEEECCccccC-C------CCCCeEEEEEECC
Confidence 99999988765532211 12467788877664 455542 22222331 1 2335566778876
Q ss_pred C
Q 015160 403 S 403 (412)
Q Consensus 403 ~ 403 (412)
.
T Consensus 293 ~ 293 (328)
T d2f8la1 293 D 293 (328)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=3.4e-07 Score=80.90 Aligned_cols=97 Identities=16% Similarity=0.064 Sum_probs=68.4
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
+.+|||++||+|.+++|.+.+|. .|+++|.+..++..++.-++..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~---------------------------------- 89 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL---------------------------------- 89 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT----------------------------------
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhc----------------------------------
Confidence 45899999999999999999998 5999999999987665322110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---hhHHHHHHHHHH--hccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIISR--ILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---~Ni~~yl~~I~~--~LKPGG~wI 331 (412)
...+..++.+|.+++.. ....+||+|+. |.. ....+.++.+.+ +|+|+|+.|
T Consensus 90 -----~~~~~~ii~~d~~~~l~--~~~~~fDlIf~----DPPY~~~~~~~~l~~l~~~~~L~~~~iIi 146 (183)
T d2fpoa1 90 -----KAGNARVVNSNAMSFLA--QKGTPHNIVFV----DPPFRRGLLEETINLLEDNGWLADEALIY 146 (183)
T ss_dssp -----TCCSEEEECSCHHHHHS--SCCCCEEEEEE----CCSSSTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----cccceeeeeeccccccc--ccccccCEEEE----cCccccchHHHHHHHHHHCCCCCCCeEEE
Confidence 01125677888777543 23578999854 432 224455666654 699999887
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.43 E-value=2.8e-06 Score=81.55 Aligned_cols=134 Identities=10% Similarity=0.066 Sum_probs=89.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+.||+|.++...|+.|. .|+++|+|..++..++.-++ .+ .+.
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~----~n----------------------~l~---- 193 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE----AN----------------------HLD---- 193 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH----HT----------------------TCC----
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH----Hh----------------------ccc----
Confidence 467999999999999999999998 69999999999977663221 00 000
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe---c-----ccCCh-hhHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC---F-----FIDTA-HNIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~---F-----FIDta-~Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
..++.++++|..+.-.. ....++||+|+.- | -+..+ .+..+.++...++|||||+++-..-
T Consensus 194 -------~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc-- 264 (317)
T d2b78a2 194 -------MANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN-- 264 (317)
T ss_dssp -------CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC--
T ss_pred -------CcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC--
Confidence 12478899998764210 1124689999852 2 12222 3455678888999999999984210
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHH----HhCCCEEEEEe
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVA----LHYGFEFEKEK 374 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll----~~~GFeii~e~ 374 (412)
+-.++.++++.++ .+.|..++...
T Consensus 265 -------------s~~~~~~~f~~~v~~a~~~~~~~~~~~~ 292 (317)
T d2b78a2 265 -------------AANMTVSQFKKQIEKGFGKQKHTYLDLQ 292 (317)
T ss_dssp -------------CTTSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred -------------CccCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 1245666665544 45677776554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4.3e-07 Score=83.10 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=85.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.++..|-+.. +..+||++|||+|.-+..+|+. +-.++.+|.+..+...|+..+..+
T Consensus 49 ~lL~~L~~~~------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a--------------- 107 (219)
T d2avda1 49 QLLANLARLI------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--------------- 107 (219)
T ss_dssp HHHHHHHHHT------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHcc------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc---------------
Confidence 4666676654 4569999999999999999974 558999999999998777544321
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCC-hhhHHHHHHHHHHhcc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILK 325 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~~~fD~VvT~FFIDt-a~Ni~~yl~~I~~~LK 325 (412)
...+.+.+..||..+.... ....++||.| |+|. ..+..+|++.+.++|+
T Consensus 108 -----------------------g~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i----fiD~dk~~y~~~~~~~~~lL~ 160 (219)
T d2avda1 108 -----------------------EAEHKIDLRLKPALETLDELLAAGEAGTFDVA----VVDADKENCSAYYERCLQLLR 160 (219)
T ss_dssp -----------------------TCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE----EECSCSTTHHHHHHHHHHHEE
T ss_pred -----------------------CccceEEEEEeehhhcchhhhhhcccCCccEE----EEeCCHHHHHHHHHHHHHHhc
Confidence 1123478899998764210 1135789998 5563 3567899999999999
Q ss_pred CCcEEEEecCcchh
Q 015160 326 DGGVWINLGPLLYH 339 (412)
Q Consensus 326 PGG~wIN~GPLlyh 339 (412)
|||++|-- ..+|+
T Consensus 161 ~GGvii~D-n~l~~ 173 (219)
T d2avda1 161 PGGILAVL-RVLWR 173 (219)
T ss_dssp EEEEEEEE-CCSGG
T ss_pred CCcEEEEe-CCccc
Confidence 99999942 24444
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=2.7e-07 Score=82.88 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+++++-+.+.. .++..|||.+||+|.++..|+++ +..|.|+|.+..||..|+..++.
T Consensus 11 ll~evi~~l~~---~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~------------------ 69 (192)
T d1m6ya2 11 MVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE------------------ 69 (192)
T ss_dssp THHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG------------------
T ss_pred HHHHHHHhhCC---CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc------------------
Confidence 34444444432 26779999999999999999886 56899999999999887754421
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--CCCCCCccEEEEe-----cccCCh----hhHHHHHHHH
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVTC-----FFIDTA----HNIVEYIEII 320 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~--~~~~~~fD~VvT~-----FFIDta----~Ni~~yl~~I 320 (412)
...++.++.++|.++... ....++||.|+-- +=||.+ .++.+.+..+
T Consensus 70 ----------------------~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a 127 (192)
T d1m6ya2 70 ----------------------FSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKA 127 (192)
T ss_dssp ----------------------GTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHG
T ss_pred ----------------------ccccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHH
Confidence 012478888888775310 1124789988643 223332 4456789999
Q ss_pred HHhccCCcEEEEecCcchhh
Q 015160 321 SRILKDGGVWINLGPLLYHF 340 (412)
Q Consensus 321 ~~~LKPGG~wIN~GPLlyh~ 340 (412)
+++|||||.++. +.||.
T Consensus 128 ~~~Lk~gG~l~i---i~f~s 144 (192)
T d1m6ya2 128 EDLLNPGGRIVV---ISFHS 144 (192)
T ss_dssp GGGEEEEEEEEE---EESSH
T ss_pred HHhcCCCCeeee---ecccc
Confidence 999999999985 34553
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=4.2e-06 Score=77.49 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=45.5
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhh
Q 015160 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFI 230 (412)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fi 230 (412)
..|-.+++.|...... ...+..+|||+|||+|-++.-||++ +..++|+|+|..++..|+..
T Consensus 42 ~~~~~~i~~l~~~~~~-~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N 104 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDS-DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN 104 (250)
T ss_dssp HHHHHHHHHHHCCCCG-GGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcc-CccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH
Confidence 3455555555433221 1124579999999999999999988 78999999999999888844
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.34 E-value=1e-06 Score=84.77 Aligned_cols=106 Identities=12% Similarity=-0.003 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+.||+|.++..+|+.|..|+++|.|..+|..|+-.+.. +.+
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l----n~~---------------------------- 179 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL----AGL---------------------------- 179 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH----HTC----------------------------
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh----hcc----------------------------
Confidence 467999999999999999999999999999999999877632210 000
Q ss_pred CCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe---cccC---C----hhhHHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC---FFID---T----AHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~---FFID---t----a~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...++.++.+|..++... ....++||+||.- |=.. . ..++...++.+..+|+|||.++
T Consensus 180 -----~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 180 -----EQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp -----TTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred -----cCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 012378899998764210 0124689999863 3121 1 1223344556778999998765
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.33 E-value=5.1e-07 Score=79.98 Aligned_cols=101 Identities=21% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.+|||++||+|.+++|.+.+|. .|+++|.+..++.+++.-+...
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~--------------------------------- 87 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT--------------------------------- 87 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhh---------------------------------
Confidence 456899999999999999999998 5999999999987666322111
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEecccCCh---hhHHHHHHHHHH--hccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTA---HNIVEYIEIISR--ILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~FFIDta---~Ni~~yl~~I~~--~LKPGG~wI 331 (412)
....++.+..+|..++... .....+||+| |+|.. .+..+.++.|.+ +|+|||++|
T Consensus 88 -----~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI----flDPPY~~~~~~~~l~~i~~~~~L~~~giIi 148 (182)
T d2fhpa1 88 -----KEPEKFEVRKMDANRALEQFYEEKLQFDLV----LLDPPYAKQEIVSQLEKMLERQLLTNEAVIV 148 (182)
T ss_dssp -----TCGGGEEEEESCHHHHHHHHHHTTCCEEEE----EECCCGGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----hcccccccccccchhhhhhhcccCCCcceE----EechhhhhhHHHHHHHHHHHCCCCCCCEEEE
Confidence 0112367888887653210 0124579988 56653 346678888864 699999887
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.29 E-value=2.3e-06 Score=75.21 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHH
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYM 223 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~M 223 (412)
.|.++|-+.+... ++.+|||||||+|.+...++++ ...+.|+|+...+
T Consensus 6 ~i~~~m~~l~~~~---~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~ 56 (223)
T d2ih2a1 6 EVVDFMVSLAEAP---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA 56 (223)
T ss_dssp HHHHHHHHHCCCC---TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT
T ss_pred HHHHHHHHhcCCC---CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHH
Confidence 4667777776533 5679999999999998888654 4569999998755
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.16 E-value=3.8e-06 Score=77.10 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=85.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..|-+.. +..+||++|+|+|.-+..+|+. +-.++.+|.++.+...|+-..+.+
T Consensus 50 ~L~~L~~~~------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~---------------- 107 (227)
T d1susa1 50 FLSMLLKLI------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA---------------- 107 (227)
T ss_dssp HHHHHHHHH------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhc------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh----------------
Confidence 666666554 4569999999999999999863 569999999999987777444321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC----CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhcc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD----PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 325 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~----~~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LK 325 (412)
...+++.++.||..+.... ....++||.| |||-. .+-..|++.+.++|+
T Consensus 108 ----------------------g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~i----FiDa~k~~y~~~~e~~~~ll~ 161 (227)
T d1susa1 108 ----------------------GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI----FVDADKDNYLNYHKRLIDLVK 161 (227)
T ss_dssp ----------------------TCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEE----EECSCSTTHHHHHHHHHHHBC
T ss_pred ----------------------ccccceeeeehHHHHHHHHHHhccccCCceeEE----EeccchhhhHHHHHHHHhhcC
Confidence 1123478899998875420 0124689988 67744 557799999999999
Q ss_pred CCcEEEEecCcchh
Q 015160 326 DGGVWINLGPLLYH 339 (412)
Q Consensus 326 PGG~wIN~GPLlyh 339 (412)
|||++|-- ..+|+
T Consensus 162 ~gGiii~D-Nvl~~ 174 (227)
T d1susa1 162 VGGVIGYD-NTLWN 174 (227)
T ss_dssp TTCCEEEE-TTTGG
T ss_pred CCcEEEEc-cCCCC
Confidence 99999942 34555
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.15 E-value=1.9e-06 Score=81.07 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+||++|.|.|..+.++.+.+. .|+.+|+++.++.+|+.-+...... +....
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~---------------------~~~~~---- 126 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGL---------------------LEAML---- 126 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTH---------------------HHHHH----
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccch---------------------hhhhh----
Confidence 457999999999999999988875 6999999999998776332110000 00000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhH--HHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
.....++.++.+|.+++-. ..++||+|+.-.+-.. +..+ .++++.+.++|+|||+++.
T Consensus 127 ----~~~d~rv~i~~~Da~~~l~---~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~ 188 (276)
T d1mjfa_ 127 ----NGKHEKAKLTIGDGFEFIK---NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 188 (276)
T ss_dssp ----TTCCSSEEEEESCHHHHHH---HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred ----ccCCCCceEEEChHHHHHh---ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEE
Confidence 0112358899999887543 2478999986544322 1111 4799999999999999985
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=1.6e-05 Score=74.89 Aligned_cols=122 Identities=15% Similarity=0.299 Sum_probs=82.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+..+|||.|||.|-++..+|+.. ..|+|+|+|...+..|+.-.. + +
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~---~-~----------------------------- 156 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE---R-H----------------------------- 156 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHH---H-T-----------------------------
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHH---H-c-----------------------------
Confidence 34689999999999999998775 579999999999988873211 0 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------------------hh-HHHHHHHHHHhccCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------HN-IVEYIEIISRILKDG 327 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------~N-i~~yl~~I~~~LKPG 327 (412)
.....+.+..+|+.+... ...+.||+||++= ||.+. .| +.-|-+-+.++|+||
T Consensus 157 -----~~~~~~~i~~~~~~~~~~--~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~ 229 (271)
T d1nv8a_ 157 -----GVSDRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG 229 (271)
T ss_dssp -----TCTTSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred -----CCCceeEEeecccccccc--cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCC
Confidence 011236678888887543 2347899999872 33221 11 233445577899999
Q ss_pred cEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCC
Q 015160 328 GVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 368 (412)
Q Consensus 328 G~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GF 368 (412)
|+++- +|+- -.+++++++++.||
T Consensus 230 G~l~~Eig~~------------------Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 230 KIVLMEIGED------------------QVEELKKIVSDTVF 253 (271)
T ss_dssp CEEEEECCTT------------------CHHHHTTTSTTCEE
T ss_pred CEEEEEECHH------------------HHHHHHHHHHhCCE
Confidence 98774 4431 14667777878887
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.11 E-value=1.7e-06 Score=82.93 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|.|.|.++.++.+.. -.|+++|++..++.+++.-+. ..+. + .
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~------------~~~~--~--~------------ 128 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP------------EWHQ--G--A------------ 128 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH------------HHHT--T--G------------
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCc------------cccc--C--c------------
Confidence 45699999999999999998773 489999999999976652211 0000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccC-C-hhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FID-T-AHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FID-t-a~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|.+++-. ...++||+|+.-. +.. . +..+ .++++.+.++|||||+++.
T Consensus 129 ------~~d~rv~i~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 129 ------FDDPRAVLVIDDARAYLE--RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp ------GGCTTEEEEESCHHHHHH--HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred ------cCCCceEEEEchHHHHhh--hcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 011347889999998543 2357899998543 222 1 1223 4899999999999999984
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=7.1e-06 Score=78.20 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|.|.|.++.++.+.. -.|+++|+++.++.+|+.-+. ..+. ..
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~------------~~~~------------~~---- 140 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK------------QTSC------------GF---- 140 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH------------HHHG------------GG----
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH------------hhcc------------cc----
Confidence 45699999999999999999873 579999999999987763221 1000 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC---ChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|.+++-. ...++||+|+.-.+-. .+..+ .++++.+++.|+|||+++.
T Consensus 141 -------~d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~ 202 (295)
T d1inla_ 141 -------DDPRAEIVIANGAEYVR--KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 202 (295)
T ss_dssp -------GCTTEEEEESCHHHHGG--GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred -------cCCCcEEEhhhHHHHHh--cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence 01347889999888544 2357899998654421 11122 4799999999999999985
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=8.1e-06 Score=77.30 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|-|.|..+.++.+. .-+|+.+|+...++.+|+.-+... +. . +
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~------------~~------------~--~-- 129 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGM------------AI------------G--Y-- 129 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH------------HG------------G--G--
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhh------------cc------------c--c--
Confidence 4579999999999999999987 358999999999998876332110 00 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
...++.++.+|.+++-. ...++||+|+.-.+-+ .+..+ .++++.+.+.|+|||+++.
T Consensus 130 -------~d~rv~i~~~Da~~~l~--~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 190 (285)
T d2o07a1 130 -------SSSKLTLHVGDGFEFMK--QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 190 (285)
T ss_dssp -------GCTTEEEEESCHHHHHH--TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCceEEEccHHHHHh--cCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence 01347889999887543 2357899998765421 12222 2689999999999999985
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.98 E-value=2.2e-05 Score=72.09 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=41.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+-+... ..++.+||++|||+|.|+..|+++|..|+|+|++..|+...+
T Consensus 9 i~~~iv~~~~---~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~ 60 (235)
T d1qama_ 9 NIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60 (235)
T ss_dssp HHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHhcC---CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHH
Confidence 5555555443 226789999999999999999999999999999999875433
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.94 E-value=9.3e-06 Score=78.04 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=74.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|-|.|.++.++.+.. -.|+.+|+...++.+++.-+ |..+. .
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~------------~~~~~------------~----- 156 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFL------------PGMSC------------G----- 156 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHC------------TTTSG------------G-----
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhc------------hhhcc------------c-----
Confidence 45699999999999999999964 47999999999997776322 11000 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|.+++-. ...++||+|+.-.+-. .+..+ .++++.++++|+|||+++.
T Consensus 157 ------~~dprv~i~i~Da~~~l~--~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~ 218 (312)
T d2b2ca1 157 ------FSHPKLDLFCGDGFEFLK--NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 218 (312)
T ss_dssp ------GGCTTEEEECSCHHHHHH--HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred ------cCCCCeEEEEchHHHHHH--hCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence 011347889999888543 2357899998755422 12222 3689999999999999996
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.93 E-value=2.6e-05 Score=68.51 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=65.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
+.+|||+-||+|.+++|.+.+|. .|+.+|.+...+...+-.+... .+.
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l----------------------------~~~--- 92 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL----------------------------KCS--- 92 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT----------------------------TCC---
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhh----------------------------ccc---
Confidence 45899999999999999999998 7999999999875444222110 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh---hhHHHHHHHHHH--hccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIISR--ILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---~Ni~~yl~~I~~--~LKPGG~wI 331 (412)
.....+...|..+.........+||+| |+|.. ......++.+.. +|+++|++|
T Consensus 93 ------~~~~~~~~~d~~~~l~~~~~~~~fDlI----FlDPPY~~~~~~~~l~~l~~~~~L~~~~lii 150 (183)
T d2ifta1 93 ------SEQAEVINQSSLDFLKQPQNQPHFDVV----FLDPPFHFNLAEQAISLLCENNWLKPNALIY 150 (183)
T ss_dssp ------TTTEEEECSCHHHHTTSCCSSCCEEEE----EECCCSSSCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ------ccccccccccccccccccccCCcccEE----EechhHhhhhHHHHHHHHHHhCCcCCCcEEE
Confidence 011344555544433222234579988 55644 224566777654 799999887
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=1.3e-05 Score=75.93 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|-|.|.++.++.+. +. .|+.+|++..++.+++.-+......
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~----------------------------- 130 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG----------------------------- 130 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-----------------------------
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhcc-----------------------------
Confidence 4569999999999999999987 43 7999999999998776322110000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|.++.... ..+++||+|+.-.+-. .+..+ .++++.++++|+|||+++.
T Consensus 131 ------~~~~r~~i~~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 193 (290)
T d1xj5a_ 131 ------YEDPRVNLVIGDGVAFLKN-AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT 193 (290)
T ss_dssp ------GGSTTEEEEESCHHHHHHT-SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred ------ccCCCcEEEEccHHHHHhh-ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEE
Confidence 0123478899998775431 1246899998655421 12222 3789999999999999995
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.87 E-value=3e-05 Score=76.26 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=87.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHHhhhhcccccc
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSSFILNHTETAG 238 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---------------Gf~V~GnD~S~~ML~~s~filn~~~~~~ 238 (412)
|++.+-+.+.. ..+.+||||+||+|.+..++.++ ...+.|.|++..+...|+..+-
T Consensus 150 Iv~~mv~ll~~---~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~------ 220 (425)
T d2okca1 150 LIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY------ 220 (425)
T ss_dssp HHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH------
T ss_pred hhHhhheeccC---cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh------
Confidence 45555554432 25679999999999998877664 2358899999999877663221
Q ss_pred cccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c-----------
Q 015160 239 EWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F----------- 305 (412)
Q Consensus 239 ~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F----------- 305 (412)
+ | ++. .....+..+|+.+... ...||+|+++ |
T Consensus 221 ---l----~-------------g~~-----------~~~~~i~~~d~l~~~~----~~~fD~Ii~NPPfg~~~~~~~~~~ 265 (425)
T d2okca1 221 ---L----H-------------GIG-----------TDRSPIVCEDSLEKEP----STLVDVILANPPFGTRPAGSVDIN 265 (425)
T ss_dssp ---H----T-------------TCC-----------SSCCSEEECCTTTSCC----SSCEEEEEECCCSSCCCTTCCCCC
T ss_pred ---h----c-------------CCc-----------cccceeecCchhhhhc----ccccceEEecCCCCCCccccchhh
Confidence 0 0 000 0113456677776432 4689999987 3
Q ss_pred ----ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 306 ----FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 306 ----FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+..+...-..+|..+.++|||||..+-+-|--+-+.. -+...+++.|.+. +.++.
T Consensus 266 ~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~-----------~~~~~iR~~Ll~~-~~i~a 324 (425)
T d2okca1 266 RPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEA-----------GAGETIRKRLLQD-FNLHT 324 (425)
T ss_dssp CTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCS-----------THHHHHHHHHHHH-EEEEE
T ss_pred hhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhh-----------hhHHHHHHHHHHh-cchhH
Confidence 1112222345899999999999998765553211110 1245788877664 44444
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.84 E-value=2.5e-06 Score=79.20 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=57.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+||++|||+|.|+..|+++|..|+|+|++..|+.. ..+ ++
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~-------l~~--------------------------~~---- 71 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNL-------SSE--------------------------KL---- 71 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSS-------SSC--------------------------TT----
T ss_pred CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhh-------hhh--------------------------hh----
Confidence 56789999999999999999999999999999988521 100 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 310 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta 310 (412)
....++.++.||++++.. ....++.||.+ |.|.|.
T Consensus 72 ----~~~~n~~ii~~D~l~~~~---~~~~~~~vv~NLPY~Ist~ 108 (245)
T d1yuba_ 72 ----KLNTRVTLIHQDILQFQF---PNKQRYKIVGNIPYHLSTQ 108 (245)
T ss_dssp ----TTCSEEEECCSCCTTTTC---CCSSEEEEEEECCSSSCHH
T ss_pred ----hhccchhhhhhhhhcccc---ccceeeeEeeeeehhhhHH
Confidence 112358899999998753 23566777776 566664
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.78 E-value=2.8e-05 Score=72.96 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|-|.|..+.++.+. + -.|+.+|+...++.+|+.-+. ... +.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~------------~~~---~~-------------- 125 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP------------SIA---GK-------------- 125 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH------------HHH---TT--------------
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhCh------------hhc---cc--------------
Confidence 4569999999999999999986 4 489999999999987763321 100 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc--CChhh--HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHN--IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~N--i~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|.++.-. ...++||+|+.-.+- ..+.+ -.++++.+.++|+|||+++.
T Consensus 126 ------~~d~r~~i~~~D~~~~l~--~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~ 187 (274)
T d1iy9a_ 126 ------LDDPRVDVQVDDGFMHIA--KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (274)
T ss_dssp ------TTSTTEEEEESCSHHHHH--TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred ------ccCCCeEEEechHHHHHh--hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence 011347889999887543 235789999865431 11122 23799999999999999985
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=0.00021 Score=63.06 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++..++|..+|.|.++.+|.+++-.|.|+|..+.|+..++.+.
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~------------------------------------- 60 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH------------------------------------- 60 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-------------------------------------
T ss_pred CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-------------------------------------
Confidence 6779999999999999999999889999999999987655221
Q ss_pred CCCCCCCCceeEEecccccccCC--CCCCCCccEEEEe-----cccCChhh----HHHHHHHHHHhccCCcEEEEecCcc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVTC-----FFIDTAHN----IVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~--~~~~~~fD~VvT~-----FFIDta~N----i~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
..++.+++++|.++... ....+.+|.|+-- +=||.+.. +...|+...++|+|||.++- +.
T Consensus 61 ------~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~i---i~ 131 (182)
T d1wg8a2 61 ------LPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVV---IA 131 (182)
T ss_dssp ------CTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEE---EE
T ss_pred ------ccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEE---Ee
Confidence 01366777777765321 0123678888743 22454432 34578888999999999985 33
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
||.. ....++..+++.+|+++..+
T Consensus 132 fhs~-------------Ed~ivk~~~~e~~~k~i~kK 155 (182)
T d1wg8a2 132 FHSL-------------EDRVVKRFLRESGLKVLTKK 155 (182)
T ss_dssp CSHH-------------HHHHHHHHHHHHCSEESCSS
T ss_pred cccc-------------hhHHHHHHHhhccceeccCC
Confidence 4422 22468888888888887654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.00039 Score=65.32 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=40.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (412)
+++.+-+.... .++..||++|+|+|.|+..|+++|..|+++|+...|+...
T Consensus 9 i~~kIv~~~~~---~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L 59 (278)
T d1zq9a1 9 IINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAEL 59 (278)
T ss_dssp HHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhCC---CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHH
Confidence 45555554432 2567899999999999999999999999999999997543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00054 Score=68.95 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=71.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--------------------CCeEEEEeCCHHHHHHHHhhhh
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--------------------GFISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--------------------Gf~V~GnD~S~~ML~~s~filn 232 (412)
.|++.+-+.+... .+.+|+||.||+|.+.....+. .....|.|+...+...|..-+-
T Consensus 151 ~Iv~~mv~ll~~~---~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 151 PLIKTIIHLLKPQ---PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHCCC---TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred chhHhhhhcccCc---cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 4556665555322 5679999999999997765442 1257899999998876652221
Q ss_pred cccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c-----
Q 015160 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F----- 305 (412)
Q Consensus 233 ~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F----- 305 (412)
.......+ . ..-.+..+++..-.. ....+||+|+++ |
T Consensus 228 --l~~~~~~i--------------------~------------~~~~~~~~~~l~~d~--~~~~kfD~Ii~NPPfg~~~~ 271 (524)
T d2ar0a1 228 --LHDIEGNL--------------------D------------HGGAIRLGNTLGSDG--ENLPKAHIVATNPPFGSAAG 271 (524)
T ss_dssp --TTTCCCBG--------------------G------------GTBSEEESCTTSHHH--HTSCCEEEEEECCCCTTCSS
T ss_pred --hhcccccc--------------------c------------ccchhhhhhhhhhcc--cccccceeEEecCCcccccc
Confidence 00000000 0 001234444432111 123579999987 3
Q ss_pred ------ccCChhh-HHHHHHHHHHhccCCcEEEEecC
Q 015160 306 ------FIDTAHN-IVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 306 ------FIDta~N-i~~yl~~I~~~LKPGG~wIN~GP 335 (412)
+.-...+ =..+|..+.+.|||||+..-+-|
T Consensus 272 ~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 272 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 1111112 23589999999999999876655
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00083 Score=63.49 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=79.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+-||+|.++.-||+++-.|+|+|.+..++..|+.-.. .+
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~----~n------------------------------ 257 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR----LN------------------------------ 257 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHH----HT------------------------------
T ss_pred CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHH----hc------------------------------
Confidence 45689999999999999999999999999999999987773211 01
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChhh-HHHHHHHHHHhccCC-cEEEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHN-IVEYIEIISRILKDG-GVWINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~N-i~~yl~~I~~~LKPG-G~wIN~GPLlyh~~~~~g 345 (412)
...+..++++|..+... .......+|+|| +|.... ..+.++.|.+. +|. =++|...|-.
T Consensus 258 -----~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi----lDPPR~G~~~~~~~l~~~-~~~~ivYVSCnp~T-------- 319 (358)
T d1uwva2 258 -----GLQNVTFYHENLEEDVTKQPWAKNGFDKVL----LDPARAGAAGVMQQIIKL-EPIRIVYVSCNPAT-------- 319 (358)
T ss_dssp -----TCCSEEEEECCTTSCCSSSGGGTTCCSEEE----ECCCTTCCHHHHHHHHHH-CCSEEEEEESCHHH--------
T ss_pred -----ccccceeeecchhhhhhhhhhhhccCceEE----eCCCCccHHHHHHHHHHc-CCCEEEEEeCCHHH--------
Confidence 01246778887765432 112246789875 575422 34556666654 332 2223333321
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
| .-|++.++ +.||++.+-.
T Consensus 320 --------l-aRDl~~l~-~~gy~l~~i~ 338 (358)
T d1uwva2 320 --------L-ARDSEALL-KAGYTIARLA 338 (358)
T ss_dssp --------H-HHHHHHHH-HTTCEEEEEE
T ss_pred --------H-HHHHHHHH-HCCCeEeEEE
Confidence 1 23555554 5699999865
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00061 Score=62.93 Aligned_cols=37 Identities=16% Similarity=0.014 Sum_probs=34.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
++..||++|||+|.|+..|+++|..|+++|+...|+.
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~ 57 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAA 57 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhH
Confidence 4668999999999999999999999999999999874
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.02 E-value=0.0036 Score=57.35 Aligned_cols=147 Identities=15% Similarity=0.117 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|+|.|--+.-||-. ...++-+|-+.--..+-+.+... +.+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~----------------------------L~L-- 119 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA----------------------------LQL-- 119 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH----------------------------HTC--
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHH----------------------------hCC--
Confidence 3568999999999999988863 67899999998776543332211 010
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYG 345 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g 345 (412)
.++..+.+...++-......+.||+|++--|-. +...++-..++||+||.||- -|+
T Consensus 120 ---------~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAva~----l~~ll~~~~~~l~~~g~~i~~KG~---------- 176 (239)
T d1xdza_ 120 ---------ENTTFCHDRAETFGQRKDVRESYDIVTARAVAR----LSVLSELCLPLVKKNGLFVALKAA---------- 176 (239)
T ss_dssp ---------SSEEEEESCHHHHTTCTTTTTCEEEEEEECCSC----HHHHHHHHGGGEEEEEEEEEEECC----------
T ss_pred ---------CCcEEEeehhhhccccccccccceEEEEhhhhC----HHHHHHHHhhhcccCCEEEEECCC----------
Confidence 134556655444322112246899998865543 55778889999999999995 233
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
.++=-.++.+..+...|+++........+.... ...+.+.+|.
T Consensus 177 -----~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~---------~r~lv~i~K~ 219 (239)
T d1xdza_ 177 -----SAEEELNAGKKAITTLGGELENIHSFKLPIEES---------DRNIMVIRKI 219 (239)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCC---------EEEEEEEEEC
T ss_pred -----ChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCC---------CEEEEEEEEC
Confidence 111123455667788999988755433344333 2445666665
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.93 E-value=0.00028 Score=65.57 Aligned_cols=82 Identities=16% Similarity=0.042 Sum_probs=56.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
...+|||.=||+|+.++.||.+|+.|+++|-++.+....+--++++....+. ..
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~------------------~~-------- 141 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEI------------------GG-------- 141 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTT------------------HH--------
T ss_pred CCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchh------------------HH--------
Confidence 3458999999999999999999999999999997764433223222110000 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 302 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~Vv 302 (412)
....+++++.||..++.. ...+.||+|+
T Consensus 142 ----~~~~ri~li~~Ds~~~L~--~~~~~~DvIY 169 (250)
T d2oyra1 142 ----WLQERLQLIHASSLTALT--DITPRPQVVY 169 (250)
T ss_dssp ----HHHHHEEEEESCHHHHST--TCSSCCSEEE
T ss_pred ----HHhhhheeecCcHHHHHh--ccCCCCCEEE
Confidence 012358999999888654 2356799995
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0023 Score=57.42 Aligned_cols=138 Identities=12% Similarity=0.129 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHHHhcCccc----ChhHH-hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEE
Q 015160 143 ADVDKVRCIIRNIVRDWAAE----GKTER-DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQ 215 (412)
Q Consensus 143 ~d~~kv~s~L~q~~RDWS~e----G~~ER-~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~ 215 (412)
..+++.. ...++..+|... +.... +..-.-+++-|.- ++.. ++.+|||+|+|.|--+.-||-.. ..++
T Consensus 19 ~q~~~L~-~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~-~~~~---~~~~ilDiGsGaG~PGi~laI~~p~~~~~ 93 (207)
T d1jsxa_ 19 HQKNQLI-AYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVV-APYL---QGERFIDVGTGPGLPGIPLSIVRPEAHFT 93 (207)
T ss_dssp HHHHHHH-HHHHHHHHHC------------CHHHHHHHHHHHH-GGGC---CSSEEEEETCTTTTTHHHHHHHCTTSEEE
T ss_pred HHHHHHH-HHHHHHHHhCCceeeEECCCHHHHHHHHhcchHhh-hhhh---cCCceeeeeccCCceeeehhhhcccceEE
Confidence 4445554 555666778652 11111 2122345555542 1211 34589999999999999998764 5899
Q ss_pred EEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCC
Q 015160 216 GNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV 295 (412)
Q Consensus 216 GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~ 295 (412)
.+|-+..=..+.+.+... .. -.++....+...++.. .
T Consensus 94 Lves~~KK~~FL~~~~~~----------------------------L~-----------L~nv~v~~~R~E~~~~----~ 130 (207)
T d1jsxa_ 94 LLDSLGKRVRFLRQVQHE----------------------------LK-----------LENIEPVQSRVEEFPS----E 130 (207)
T ss_dssp EEESCHHHHHHHHHHHHH----------------------------TT-----------CSSEEEEECCTTTSCC----C
T ss_pred EEecchHHHHHHHHHHHH----------------------------cC-----------Ccceeeeccchhhhcc----c
Confidence 999998776544422211 00 1246777777666533 4
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.+||+|++--|-. +...++-..++||+||.++-
T Consensus 131 ~~fD~V~sRA~~~----~~~ll~~~~~~l~~~g~~~~ 163 (207)
T d1jsxa_ 131 PPFDGVISRAFAS----LNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp SCEEEEECSCSSS----HHHHHHHHTTSEEEEEEEEE
T ss_pred cccceehhhhhcC----HHHHHHHHHHhcCCCcEEEE
Confidence 6899997765533 55678888999999999985
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.015 Score=50.42 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=87.3
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+|.+.|.-. +++.+|||+||+-|.....++++ .-.|.|+|+-. |
T Consensus 11 ~EI~~k~~l~--k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-~----------------------------- 58 (180)
T d1ej0a_ 11 DEIQQSDKLF--KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-M----------------------------- 58 (180)
T ss_dssp HHHHHHHCCC--CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-C-----------------------------
T ss_pred HHHHHHhCcc--CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-c-----------------------------
Confidence 3455544422 26779999999999998877764 24577777543 1
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCC-----CCCCCCccEEEEecc--------cCChhh---HHHH
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCFF--------IDTAHN---IVEY 316 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~-----~~~~~~fD~VvT~FF--------IDta~N---i~~y 316 (412)
. ...+..++.||+.+.... ....+.+|+|++=-- .|.... +...
T Consensus 59 ---------------~-----~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~ 118 (180)
T d1ej0a_ 59 ---------------D-----PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELA 118 (180)
T ss_dssp ---------------C-----CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred ---------------c-----ccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHH
Confidence 0 012356778887652210 012467999987432 222211 1234
Q ss_pred HHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEE
Q 015160 317 IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAF 396 (412)
Q Consensus 317 l~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f 396 (412)
+....++||+||.||- .. |. | -..+++...++.. |+-++.....+.=..+ .-.|
T Consensus 119 l~~a~~~Lk~gG~fV~----K~-F~---g--------~~~~~l~~~l~~~-F~~V~~~KP~aSR~~S---------sE~Y 172 (180)
T d1ej0a_ 119 LEMCRDVLAPGGSFVV----KV-FQ---G--------EGFDEYLREIRSL-FTKVKVRKPDSSRARS---------REVY 172 (180)
T ss_dssp HHHHHHHEEEEEEEEE----EE-ES---S--------TTHHHHHHHHHHH-EEEEEEECCTTSCTTC---------CEEE
T ss_pred HHhhhhccCCCCcEEE----EE-ec---C--------ccHHHHHHHHHhh-cCEEEEECCCCcccCC---------ceEE
Confidence 6667799999999995 11 21 1 2356788888775 8877654433333333 3577
Q ss_pred EEEEE
Q 015160 397 WTMRK 401 (412)
Q Consensus 397 ~VarK 401 (412)
+||+.
T Consensus 173 lv~~g 177 (180)
T d1ej0a_ 173 IVATG 177 (180)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 78765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.00094 Score=56.73 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+| +|.++..+|+ +|.+|.++|.|...+..++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~ 68 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM 68 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence 67899999999 8888888875 4999999999998876555
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0014 Score=55.78 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=62.2
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
+++.+||+.|+ |.|.++..+|+. |+.|.+.+-|..-+..++.+ .+ ...|
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~--Ga----~~vi---------------------- 78 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN--GA----HEVF---------------------- 78 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--TC----SEEE----------------------
T ss_pred CCCCEEEEEeccccccccccccccccCccccccccccccccccccc--Cc----cccc----------------------
Confidence 36789999997 689999999876 99999999898765443311 00 0000
Q ss_pred CCCCCCCCCCCCceeEEeccccc----ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 265 PDIHPASAGITEGFSMCGGDFVE----VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~e----ly~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
.....|+.+ ... .+.+|+|+.+ .-+ .+++...++|+|||.+|.+|.
T Consensus 79 --------------~~~~~~~~~~i~~~t~----~~g~d~v~d~-----~g~--~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 79 --------------NHREVNYIDKIKKYVG----EKGIDIIIEM-----LAN--VNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp --------------ETTSTTHHHHHHHHHC----TTCEEEEEES-----CHH--HHHHHHHHHEEEEEEEEECCC
T ss_pred --------------ccccccHHHHhhhhhc----cCCceEEeec-----ccH--HHHHHHHhccCCCCEEEEEec
Confidence 000012222 222 3569999654 332 578889999999999998764
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.95 E-value=0.11 Score=47.29 Aligned_cols=150 Identities=21% Similarity=0.211 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.|||++=||.|.+..-|.+.||.|. ++|+....+.+.+ .|+.. ..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~--~N~~~----------~~-------------------- 57 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYE--MNFGE----------KP-------------------- 57 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHH--HHHSC----------CC--------------------
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHH--HHCCC----------CC--------------------
Confidence 578999999999999999999999865 7999998876544 33211 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-Ee
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NL 333 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-------------FIDta~Ni~~yl~~I~~~LKPGG~wI-N~ 333 (412)
.+|.+++.. ..-..+|+|+..+ .-|.-.++...+-.+-+.+||.=+++ |+
T Consensus 58 --------------~~Di~~~~~--~~~~~~Dll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV 121 (327)
T d2c7pa1 58 --------------EGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENV 121 (327)
T ss_dssp --------------BSCGGGSCG--GGSCCCSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEE
T ss_pred --------------cCchhcCch--hhcceeeeeecccccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcEEecccc
Confidence 012222111 0011234443322 12333335544555557789975555 44
Q ss_pred cCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcC
Q 015160 334 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKS 403 (412)
Q Consensus 334 GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~ 403 (412)
-.++.+- ..-..+++...++..|+.+...-.....|+.-. .-+..|+|+.|+.
T Consensus 122 ~~~~~~~-----------~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ------~R~R~fivg~r~~ 174 (327)
T d2c7pa1 122 KNFASHD-----------NGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQ------KRERIYMICFRND 174 (327)
T ss_dssp GGGGTGG-----------GGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSB------CCEEEEEEEEBGG
T ss_pred hhhhhhc-----------cchhhHHhhhHHHhcCCcceeeEecHHHcCCCc------hhhhheeeeeccC
Confidence 3333211 112457888899999998876554455564321 2256788998864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.92 E-value=0.0062 Score=51.06 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=33.0
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.||| .|.++..+|+. |.+|.++|.+..-+..++
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~ 67 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 67 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence 67799999998 67777777665 999999999998876555
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.90 E-value=0.0079 Score=54.58 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=25.4
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHH
Q 015160 189 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~G--f~V~GnD~S~~ 222 (412)
++.+||++|++.|.-+..+|. .| -.+.|+|+...
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~ 119 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS 119 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh
Confidence 456899999999987766653 23 47899998653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.77 E-value=0.011 Score=50.17 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.||| .|.++..+|+. |+ .|.++|.+..-+..++
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~ 70 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 70 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccc
Confidence 67899999998 48888888776 87 7999999999886554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.63 E-value=0.0093 Score=57.76 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=70.9
Q ss_pred CCeEEEecCCCChhHHHHHH-cCC-eEEEEeCCHHHHHHHHhh--hhcccccccccccccccccCCCCCcccCccccccC
Q 015160 190 PPACLVPGAGLGRLALEISH-LGF-ISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~fi--ln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
+.+|||+.||+|-.+...|+ .|. .|++||+|...+..++.- +|..... .........
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~-----------------~~~~~~~~~-- 106 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGEL-----------------RESKGRAIL-- 106 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCC-----------------EECSSEEEE--
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccc-----------------ccccccccc--
Confidence 46899999999999997776 454 799999999998665532 2221100 000000000
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.....+.+..+|...+.. .....||+|. ||.---...||+...+.+|.||++.
T Consensus 107 -------~~~~~~~~~~~Da~~~~~--~~~~~fDvID----iDPfGs~~pfldsAi~a~~~~Gll~ 159 (375)
T d2dula1 107 -------KGEKTIVINHDDANRLMA--ERHRYFHFID----LDPFGSPMEFLDTALRSAKRRGILG 159 (375)
T ss_dssp -------ESSSEEEEEESCHHHHHH--HSTTCEEEEE----ECCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred -------cccceeEeehhhhhhhhH--hhcCcCCccc----CCCCCCcHHHHHHHHHHhccCCEEE
Confidence 011236677778765543 2346799874 5544444579999999999999996
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.16 E-value=0.089 Score=48.43 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S 220 (412)
+..+|+|+|||.|.-++.+|.+. -.|.|.++-
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG 99 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG 99 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence 56799999999999999999774 456666663
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.95 E-value=0.0091 Score=51.10 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=33.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|||. |.++..+|+. |. .|.++|.+..-+..++
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~ 69 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK 69 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence 3678999999997 8888888886 76 6999999998776555
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.15 Score=45.98 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=31.5
Q ss_pred CCeEEEecCCCChhHHHHHHcCC--e-EEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGF--I-SQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf--~-V~GnD~S~~ML~~s~ 228 (412)
+.+||++=||.|.+..-|.+.|+ + |-++|+....+.+.+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~ 43 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYK 43 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHH
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHH
Confidence 46899999999988877777797 3 459999998876544
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=94.71 E-value=0.4 Score=42.63 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=31.3
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHH
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 228 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~ 228 (412)
.+||++=||.|.+..-|-+.||++. ++|+......+.+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~ 39 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYE 39 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHH
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence 3799999999999888888899876 9999998765433
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.44 E-value=0.092 Score=49.03 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=78.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||..||-|.=+..||.. .-.++++|.+..-+......+++..
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~------------------------------ 165 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG------------------------------ 165 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT------------------------------
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH------------------------------
Confidence 6779999999999988888765 3469999999988754432222110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec------------ccCChhhHHH-------HHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF------------FIDTAHNIVE-------YIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F------------FIDta~Ni~~-------yl~~I~~~ 323 (412)
..++..+..|.+.+.. ..+.||.|+. |- +-.+..++.+ .|....++
T Consensus 166 ---------~~~i~~~~~d~~~~~~---~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 233 (313)
T d1ixka_ 166 ---------VLNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV 233 (313)
T ss_dssp ---------CCSEEEESSCGGGGGG---GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hhcccccccccccccc---ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhe
Confidence 0124445566655432 2467887763 11 1223333433 46788899
Q ss_pred ccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 324 LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
|||||++|= ..-.. .-+=..+-|..++++.+|+++..
T Consensus 234 lk~gG~lVY------sTCSl-------~~eENE~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 234 LKPGGILVY------STCSL-------EPEENEFVIQWALDNFDVELLPL 270 (313)
T ss_dssp EEEEEEEEE------EESCC-------CGGGTHHHHHHHHHHSSEEEECC
T ss_pred eCCCcEEEE------eeccC-------ChHhHHHHHHHHHhcCCCEEeec
Confidence 999999882 11000 00113456777888889888753
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.32 E-value=0.023 Score=49.44 Aligned_cols=49 Identities=27% Similarity=0.296 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
|...+.....-++... ++.+|+++|+|.+.| |++|+++|++|+-+|-+.
T Consensus 13 ~~~~~~~~~~~~~~~~--~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 13 YEEFLEIARNGLKATS--NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp HHHHHHHHHHCSCCCS--SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred HHHHHHHHhcCCCCCC--CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5566666666555332 567999999999999 788999999999999764
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.22 E-value=0.024 Score=47.66 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.| .|.|.++..||+. |..|.+..-+..=+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~ 63 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR 63 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccc
Confidence 678999987 4678888888876 99999888776544
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.01 E-value=0.15 Score=42.02 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=58.5
Q ss_pred CeEEEecCC--CChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAG--LGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCG--lGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.||.++|+| =+.+|..|++.||.|+|.|.+...+..+.. .. .
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-------~~-~---------------------------- 44 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-------RQ-L---------------------------- 44 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-------TT-S----------------------------
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-------hh-c----------------------------
Confidence 378999887 345788889999999999999877643320 00 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
.. ...+..+.. ...|+|+-+- ....+.+.++.+...|+++-++++.+..
T Consensus 45 ---------~~-~~~~~~~~~------~~~DiIilav---p~~~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 45 ---------VD-EAGQDLSLL------QTAKIIFLCT---PIQLILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp ---------CS-EEESCGGGG------TTCSEEEECS---CHHHHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred ---------cc-eeeeecccc------cccccccccC---cHhhhhhhhhhhhhhcccccceeecccc
Confidence 00 001112221 3468776432 2345778889999999999999876544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.54 E-value=0.018 Score=48.86 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
+++.+||+.|+ |.|.++..+|+. |..|.+++-|..=+
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~ 65 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL 65 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS
T ss_pred CCCCEEEEEeccccchhhhhhhhccccccccccccccccc
Confidence 37789999884 568899989877 99999999887544
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.026 Score=48.03 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.7
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+..||+++|+|.+.| |++|+++|++|+-+|-+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 567899999999999 899999999999998764
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.092 Score=48.25 Aligned_cols=40 Identities=10% Similarity=-0.112 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~ 228 (412)
++.+|||..||-|.=+..||..+. .|+++|.|..-+....
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~ 143 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY 143 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh
Confidence 577999999999999999998865 5999999998775444
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.43 E-value=0.1 Score=45.87 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=53.7
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--ccc---------CChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFI---------DTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFI---------Dta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
.|+.||-+++-.. -.++++|+|+|- |.+ +-..-+..+++.++++|||||.++-++...|....
T Consensus 6 ~~~~~D~le~l~~-l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~----- 79 (279)
T d1eg2a_ 6 VYDVCDCLDTLAK-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA----- 79 (279)
T ss_dssp EEEECCHHHHHHT-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT-----
T ss_pred eEEechHHHHHhh-CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccc-----
Confidence 4677888875321 236899999986 433 11233567788999999999977653322222110
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
........+..++...||.+...
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~ 102 (279)
T d1eg2a_ 80 ---GSGDLISIISHMRQNSKMLLANL 102 (279)
T ss_dssp ---TBCCHHHHHHHHHHHCCCEEEEE
T ss_pred ---cccchhhHHHHHHhccCceeeee
Confidence 11233455667788899998664
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.42 E-value=0.031 Score=48.23 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+||+.|+ |.|..+..||+ +|..|.+.--|..-+..++-+ . ..+.|. .
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l--G----a~~vi~-----~---------------- 83 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL--G----AKEVLA-----R---------------- 83 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT--T----CSEEEE-----C----------------
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc--c----cceeee-----c----------------
Confidence 5678999984 78899999985 599999988877665433311 1 111110 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
..++.+... .-..+.+|+|+.+-. -.++....++|||||.++.+|+.
T Consensus 84 ----------------~~~~~~~~~-~~~~~gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 84 ----------------EDVMAERIR-PLDKQRWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp ----------------C----------CCSCCEEEEEECST-------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred ----------------chhHHHHHH-HhhccCcCEEEEcCC-------chhHHHHHHHhCCCceEEEeecc
Confidence 000011100 011367999965432 14688899999999999988775
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.97 E-value=0.47 Score=38.85 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=30.0
Q ss_pred eEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHHHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMMICSS 228 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML~~s~ 228 (412)
+|+.+|||+ |.+|.-|.+.|+ .|+|.|.+..-+..+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~ 43 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV 43 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH
Confidence 699999997 447888999997 6899999998875443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.87 E-value=0.03 Score=47.50 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCCeEEEecC-C-CChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015160 188 ESPPACLVPGA-G-LGRLALEISHL-GFISQGNEFSYYMMIC 226 (412)
Q Consensus 188 ~~~~rVLvPGC-G-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (412)
+++.+||+-|+ | .|..+..||+. |.+|.++.-|.+-+..
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~ 69 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY 69 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHH
Confidence 37789999887 3 78899999887 8999999999876543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.80 E-value=0.076 Score=45.99 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|||. |-++..+|+. |. .|.++|.+..-+..++
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~ 67 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 67 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence 3678999999998 6678888754 66 7999999999987666
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.21 Score=41.38 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|||. |.++..+|+. |+ .|.++|.+..=+..++
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~ 68 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 68 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence 677999999975 5556666655 88 7999999998876555
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.38 E-value=0.036 Score=46.40 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=32.9
Q ss_pred CCCCeEEEecCC--CChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAG--LGRLALEISHL-GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCG--lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|+| .|.++..||+. |..|.+.+.|..-+..++
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~ 70 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL 70 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH
Confidence 367899998544 78999999877 999999999998764433
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.24 E-value=0.039 Score=46.47 Aligned_cols=31 Identities=26% Similarity=0.190 Sum_probs=27.9
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+||+++|+|.+.| |++|+++|++|+-+|-+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5899999999999 789999999999999653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.00 E-value=0.15 Score=42.30 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (412)
++.+||+.||| .|-++..+|+ .|..+.++|-+..=+..
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~ 69 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA 69 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHH
Confidence 67899999997 4777888877 49999999988875543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=91.57 E-value=0.19 Score=43.41 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=49.0
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--ccc-----CChhh-------HHHHHHHHHHhccCCcEEEEecCcchhhhhcc
Q 015160 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFI-----DTAHN-------IVEYIEIISRILKDGGVWINLGPLLYHFADLY 344 (412)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFI-----Dta~N-------i~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~ 344 (412)
.+..||.+++... -.++++|+|+|- |.+ |...+ +.+.++.++++|||||..+.++-
T Consensus 6 ~i~~gDcle~l~~-lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~--------- 75 (256)
T d1g60a_ 6 KIHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT--------- 75 (256)
T ss_dssp SEEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC---------
T ss_pred EEEeccHHHHHhh-CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC---------
Confidence 3688998885321 126889999986 433 22222 33467789999999997753211
Q ss_pred CCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 345 GQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 345 g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
......+..++...||.....
T Consensus 76 --------~~~~~~~~~~~~~~g~~~~~~ 96 (256)
T d1g60a_ 76 --------PFNCAFICQYLVSKGMIFQNW 96 (256)
T ss_dssp --------HHHHHHHHHHHHHTTCEEEEE
T ss_pred --------chhhhhhhhhhhcccceeeee
Confidence 112335666788899987663
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.05 Score=44.44 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=27.3
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
-|+++|+|.|.| |.+||++|++|+-+|-..
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 499999999999 789999999999999864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.05 E-value=0.049 Score=45.34 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|| |.|.++..+++ .|+ .|.+.|.+..=+..++
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~ 70 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK 70 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence 6779999997 47777776655 575 8999999987665444
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.02 E-value=0.26 Score=41.62 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|||. |-++..+|+. |. .|...|.+..=+..++
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~ 70 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 70 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence 3678999999997 7778888776 76 6889999998776555
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.64 E-value=0.15 Score=43.21 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=29.5
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++..||+-| -|.|.++..||+. |+.|.+.--|..-.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~ 61 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 61 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH
Confidence 345799988 4789999999987 99999998886554
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.63 E-value=0.091 Score=42.65 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=26.6
Q ss_pred eEEEecCCCChh--HHHHHHcCC-eEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGF-ISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf-~V~GnD~S~ 221 (412)
+|+++|+|.+.| |+.|+++|+ +|+-+|-+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 699999999998 778999998 599999764
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.19 E-value=0.6 Score=42.68 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=32.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+|||..||.|.=+..||.+ +..|+++|.|..=+...+
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~ 136 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 136 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH
Confidence 5779999999999988888765 568999999987765433
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=89.15 E-value=0.092 Score=44.27 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=27.1
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+|+++|+|.+.| |+.|+++|++|+-+|-+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 699999999999 789999999999999753
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.76 E-value=0.12 Score=47.49 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 015160 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ 222 (412)
..+|+++|||...| |++|+++|++|+-+|=+.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46899999999998 7889999999999997764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=88.68 E-value=2.2 Score=37.64 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=30.2
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
++++||+-|+..| .+|..|++.|++|..++.+..-|
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l 43 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKEL 43 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 5678999999765 45788899999999999998665
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=88.66 E-value=0.39 Score=42.54 Aligned_cols=51 Identities=12% Similarity=-0.063 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.|-+.+. .++..||||=||+|..+..-.++|....|+|+|.+...+|.
T Consensus 239 L~~rlI~~~s----~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~ 289 (320)
T d1booa_ 239 LPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASA 289 (320)
T ss_dssp HHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHhhhhcc----cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHH
Confidence 5555555443 25679999999999999999999999999999999987665
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.63 E-value=0.53 Score=39.98 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=31.4
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+-|+ |.|..+..||+. |+.|.++--|......++
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~ 73 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLK 73 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHH
Confidence 3458999764 689999999877 999999998987765444
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=88.25 E-value=0.16 Score=42.84 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
...+|+++|+|...| |+.|+++|++|+-+|-.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 345899999999988 88999999999999954
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.15 E-value=0.37 Score=44.82 Aligned_cols=37 Identities=11% Similarity=-0.203 Sum_probs=32.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~ 225 (412)
.+..||++|.|.|.|+..|..+| ..|+++|....++-
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~ 81 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK 81 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence 46789999999999999998874 48999999998764
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=87.84 E-value=1.7 Score=41.12 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhccCCcEEEE--ec-----C------cchhh-----hhc--cCC-CC-------CcccCCCHHHHHHHH
Q 015160 312 NIVEYIEIISRILKDGGVWIN--LG-----P------LLYHF-----ADL--YGQ-ED-------EMSIELSLEDVKRVA 363 (412)
Q Consensus 312 Ni~~yl~~I~~~LKPGG~wIN--~G-----P------Llyh~-----~~~--~g~-~~-------~~~ieLS~EEL~~ll 363 (412)
|...+|+.=++-|+|||.+|- +| | .+|.. .+. .|. .. -..+..|.||++.++
T Consensus 187 D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~i 266 (359)
T d1m6ex_ 187 DHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEI 266 (359)
T ss_dssp HHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHh
Confidence 455567777788999999983 32 1 11210 010 121 00 013456999999999
Q ss_pred Hh-CCCEEEEEee
Q 015160 364 LH-YGFEFEKEKT 375 (412)
Q Consensus 364 ~~-~GFeii~e~~ 375 (412)
++ -.|+|++.+.
T Consensus 267 e~~gsF~i~~~e~ 279 (359)
T d1m6ex_ 267 LKEGSFLIDHIEA 279 (359)
T ss_dssp HHTTTBCCEEEEE
T ss_pred ccCCCeeeeeeEe
Confidence 85 6688888553
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.32 E-value=0.64 Score=39.89 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=43.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fil 231 (412)
+++.|-+.+.+ ++..||||=||.|..+..-.++|....|+|++..-+..|+.-|
T Consensus 201 L~~~lI~~~s~----~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 201 LIERIIRASSN----PNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp HHHHHHHHHCC----TTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 55555555532 5679999999999999999999999999999999887776444
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=87.30 E-value=0.22 Score=42.80 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
..+.+|+++|.|...| |+.|+++|++|+-.|-+.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 3678999999999999 788899999999999765
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.47 E-value=0.53 Score=39.70 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCeEEEec--CCCChhHHHHHH-cCCe-EEEEeCCHHHH
Q 015160 190 PPACLVPG--AGLGRLALEISH-LGFI-SQGNEFSYYMM 224 (412)
Q Consensus 190 ~~rVLvPG--CGlGRLa~eLA~-~Gf~-V~GnD~S~~ML 224 (412)
+..||+-| -|.|..+..||+ .|.. |.+..-|..-.
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~ 69 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC 69 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH
Confidence 36899988 589999999999 5874 66777776554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.55 E-value=0.76 Score=39.93 Aligned_cols=57 Identities=18% Similarity=-0.009 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcc
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~ 234 (412)
+++.|-+.+. .++..||||=||.|..+..-.++|....|+|++..-..+|.--++..
T Consensus 196 L~~~~I~~~s----~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 196 VIERLVRALS----HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHHHhhc----CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 3444444443 25679999999999999999999999999999999887776445443
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=84.43 E-value=1.6 Score=33.60 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=23.8
Q ss_pred CCCeEEEecCCCC--hhHHHHHHcCCeEEEE--eCCHHHH
Q 015160 189 SPPACLVPGAGLG--RLALEISHLGFISQGN--EFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlG--RLa~eLA~~Gf~V~Gn--D~S~~ML 224 (412)
.+.+||++|.|.= |-+..|.+.|..|+-+ +.+..+.
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~ 50 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT 50 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH
Confidence 5679999998853 2345556668887755 5555553
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=84.42 E-value=3 Score=33.60 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=28.6
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ML 224 (412)
.+|-++|+|.-.+ |..|+++|++|+..|.+..=+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~ 37 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRI 37 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 4789999998654 778899999999999987654
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.62 E-value=0.28 Score=42.66 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=26.4
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 193 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
|+++|+|.+.| |+.|+++|++|+-+|-+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 89999999999 889999999999999654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.19 E-value=0.26 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCCeEEEe---cCCCChhHHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVP---GAGLGRLALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvP---GCGlGRLa~eLA~~Gf~V~GnD~S~ 221 (412)
...+|..+ |+|.+-||..|.++||.|+|.|...
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 45678887 4566678999999999999999864
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=82.62 E-value=0.46 Score=40.46 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=28.5
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
...||+++|+|...| |..|+++|++|+-+|=+.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 457999999999998 778899999999999643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=81.91 E-value=0.6 Score=40.06 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=58.9
Q ss_pred CCCeEEEecCCCChh-HHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRL-ALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL-a~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|+|.-.+ |...|+ +|..|+..|.+..-|.-.......
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--------------------------------- 77 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--------------------------------- 77 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------------------------------
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---------------------------------
Confidence 568999999997555 555554 499999999998876322211100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
++.....+=..+.. .-...|+|+++-.+...+-..-.=+.+-+.+|||.+.|.
T Consensus 78 ----------~~~~~~~~~~~l~~---~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 78 ----------RVELLYSNSAEIET---AVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp ----------GSEEEECCHHHHHH---HHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred ----------cceeehhhhhhHHH---hhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence 01111111011111 124579999987765433222234677788999999995
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=80.90 E-value=0.62 Score=38.73 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=29.0
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~ 228 (412)
+++.+||+.|||. |.++..+|+. |+. |.+.|.+..=+..++
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~ 70 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 70 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence 3778999999985 4456666644 875 568899987665444
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.71 E-value=11 Score=32.78 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=30.3
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
++..+|+-|++.| -+|..|++.|++|..+|.+..-+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~ 43 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG 43 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 5678999998766 46788899999999999998765
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.25 E-value=0.67 Score=39.89 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~M 223 (412)
.+.+||++|+|-..| |..|+++|+.|+-+|.+...
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 678999999999988 67789999999999987754
|